Citrus Sinensis ID: 015198

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
Protein Sequence
MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR
Secondary Structure (PSIPRED)
ccccEEccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEEEcccEEEEEEccccEEEEEccEEEEEEccccEEEEEEEcccccccEEEEEEcccccEEEcccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccEEEEEEEEccccEEEEEEccccEEEEEEcccEEEEEEEEcccccEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEcccHHHHHcccccccccEHHHHHHHccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEEcEEEEEEcccccEEEEEccccccccEEEEEcccccEEEEEccccccEEEEEEcccccccEEEccccHHHEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEEEccccEEEEEEccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccEEEEEccccccEEEEEccccEEEEEEcccEEEEEEEccccccccEEEEHHHHcccccccc
Coil and Loop (DISEMBL)
mtstvstsreilppgpfgspnagasasasasfghpqtafsdvdeiELISVSwnqdygcfaagtscgfriyncepfkETFRRDLKSGGFRIVEMLFRCNILALvgagdnsqypptkviiwddhqsrcigefafrsdvrsvklsRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGlcclshhsstsvlacpglqrgqvrIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFntvdgtrlqevrrgvdRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRvvgedsssslstpsqstellnhsssfdtlispstganpgsslsfmrgvlpkyfssewsfaqfhipEVTHFIAAFGSQNTVVIVSMdgsfyrcsfdpvhggeMLQQEYVRFLKTVSRPR
Flexible Loop (DISEMBL)
mtstvstsreilppgpFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALvgagdnsqypPTKVIIWDDHQSRCIGEFafrsdvrsvklsRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTlirifntvdgtrlqevrrGVDRAEiysialspnvqwlavASDKGTVHIFSLRVRvvgedsssslstpsqstELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFlktvsrpr
Low Complexity Region (SEG)
MTSTVSTSREILppgpfgspnagasasasasfgHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFtltldglllatastRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDsssslstpsqsTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR
Disordered region (IsUnstruct)
**************************************FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV****************************************SFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLK******
Disordered Region (DISOPRED)
***********************************************ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR***************************************PGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR**KT*****
Disordered Region (DISEMBL)
**********ILPPGPFGS**************HPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV******************NHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR
Disordered Region (DISPRO)
*******************************************EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR******************************************SFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKT*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	411	2.2.26 [Sep-21-2011]
Q68F45	344	WD repeat domain phosphoi	N/A	no	0.783	0.936	0.410	1e-70
Q640T2	344	WD repeat domain phosphoi	yes	no	0.783	0.936	0.407	2e-70
Q5MNZ6	344	WD repeat domain phosphoi	yes	no	0.783	0.936	0.407	9e-70
Q5R7W0	344	WD repeat domain phosphoi	yes	no	0.783	0.936	0.407	2e-69
Q7ZUW6	344	WD repeat domain phosphoi	yes	no	0.781	0.933	0.414	3e-69
Q5ZL16	344	WD repeat domain phosphoi	yes	no	0.781	0.933	0.414	5e-69
Q9CR39	344	WD repeat domain phosphoi	yes	no	0.783	0.936	0.404	2e-68
Q9Y484	360	WD repeat domain phosphoi	no	no	0.751	0.858	0.347	1e-49
Q91VM3	360	WD repeat domain phosphoi	no	no	0.751	0.858	0.342	7e-49
Q6DCV0	355	WD repeat domain phosphoi	N/A	no	0.739	0.856	0.355	1e-48

>sp|Q68F45|WIPI3_XENLA WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45b PE=2 SV=1

 Score =  267 bits (682), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/363 (41%), Positives = 210/363 (57%), Gaps = 41/363 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVSYVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFT 223
           H  ET  N +GLC L  +S+ S+LA PG   G V+I          ++  AH+  ++C  
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIA 192

Query: 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
           L L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct: 193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDHG 252

Query: 284 TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343
           TVHIF+       ED       P ++ +    S+SF                      LP
Sbjct: 253 TVHIFA------AED-------PKRNKQSSLASASF----------------------LP 277

Query: 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR 402
           KYFSS+WSF++F +P  +  I AFG++ N+V+ +  DGS+Y+  F+P   GE  +  Y +
Sbjct: 278 KYFSSKWSFSKFQVPSGSPCICAFGTEPNSVIAICADGSYYKFQFNP--KGECTRDVYAQ 335

Query: 403 FLK 405
           FL+
Sbjct: 336 FLE 338

Xenopus laevis (taxid: 8355)

>sp|Q640T2|WIPI3_XENTR WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45b PE=2 SV=1

 Score =  266 bits (681), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/363 (40%), Positives = 210/363 (57%), Gaps = 41/363 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGYVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFT 223
           H  ET  N +GLC L  +S+ S+LA PG   G V+I          ++  AH+  ++C  
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIA 192

Query: 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
           L L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct: 193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDHG 252

Query: 284 TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343
           TVHIF+       ED       P ++ +    S+SF                      LP
Sbjct: 253 TVHIFA------AED-------PKRNKQSSLASASF----------------------LP 277

Query: 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR 402
           KYFSS+WSF++F +P  +  + AFG++ N+V+ +  DGS+Y+  F+P   GE  +  Y +
Sbjct: 278 KYFSSKWSFSKFQVPSGSPCVCAFGTEPNSVIAICADGSYYKFQFNP--KGECTRDVYAQ 335

Query: 403 FLK 405
           FL+
Sbjct: 336 FLE 338

Xenopus tropicalis (taxid: 8364)

>sp|Q5MNZ6|WIPI3_HUMAN WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45B PE=2 SV=2

 Score =  264 bits (675), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 148/363 (40%), Positives = 210/363 (57%), Gaps = 41/363 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFT 223
           H  ET  N +GLC L  +S+ S+LA PG   G V++          ++  AH+  ++C  
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIA 192

Query: 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
           L L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct: 193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHG 252

Query: 284 TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343
           TVHIF+       ED       P ++ +    S+SF                      LP
Sbjct: 253 TVHIFA------AED-------PKRNKQSSLASASF----------------------LP 277

Query: 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR 402
           KYFSS+WSF++F +P  +  I AFG++ N V+ +  DGS+Y+  F+P   GE ++  Y +
Sbjct: 278 KYFSSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKFLFNP--KGECIRDVYAQ 335

Query: 403 FLK 405
           FL+
Sbjct: 336 FLE 338

Homo sapiens (taxid: 9606)

>sp|Q5R7W0|WIPI3_PONAB WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45B PE=2 SV=1

 Score =  263 bits (672), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/363 (40%), Positives = 210/363 (57%), Gaps = 41/363 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFT 223
           H  ET  N +GLC L  +S+ S+LA PG   G V++          ++  AH+  ++C  
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIA 192

Query: 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
           L L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct: 193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINSNQDASLICVSSDHG 252

Query: 284 TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343
           TVHIF+       ED       P ++ +    S+SF                      LP
Sbjct: 253 TVHIFA------AED-------PKRNKQSSLASASF----------------------LP 277

Query: 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR 402
           KYFSS+WSF++F +P  +  I AFG++ N V+ +  DGS+Y+  F+P   GE ++  Y +
Sbjct: 278 KYFSSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKFLFNP--KGECIRDVYAQ 335

Query: 403 FLK 405
           FL+
Sbjct: 336 FLE 338

Pongo abelii (taxid: 9601)

>sp|Q7ZUW6|WIPI3_DANRE WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45b PE=2 SV=1

 Score =  262 bits (670), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 151/364 (41%), Positives = 208/364 (57%), Gaps = 43/364 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  + +   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGGVGHVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL---INAHDSHIACF 222
           H  ET  N +GLC L  +S+ S+LA P    G V+I     N  K    I AH+  + C 
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLA-NTEKPPVDIPAHEGVLCCI 191

Query: 223 TLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282
           TL L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD 
Sbjct: 192 TLNLQGTRIATASEKGTLIRIFDTSAGQLIQELRRGSQTANIYCINFNQDASLICVSSDH 251

Query: 283 GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL 342
           GTVHIF+       ED       P ++ +    S+SF                      L
Sbjct: 252 GTVHIFA------AED-------PKRNKQSSLASASF----------------------L 276

Query: 343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYV 401
           PKYFSS+WSF++F +P  +  + AFG++ N V+ +  DGS+Y+  F+P   GE  +  Y 
Sbjct: 277 PKYFSSKWSFSKFQVPSGSPCVCAFGTEPNAVIAICADGSYYKFLFNP--KGECSRDVYA 334

Query: 402 RFLK 405
           +FL+
Sbjct: 335 QFLE 338

Danio rerio (taxid: 7955)

>sp|Q5ZL16|WIPI3_CHICK WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45B PE=2 SV=1

 Score =  261 bits (668), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 151/364 (41%), Positives = 209/364 (57%), Gaps = 43/364 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGGVGHVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL---INAHDSHIACF 222
           H  ET  N +GLC L  +S+ S+LA PG   G V+I     N  K    I AH+  ++C 
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLA-NTEKPPVDIPAHEGILSCI 191

Query: 223 TLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282
            L L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 283 GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL 342
           GTVHIF+       ED       P ++ +    S+SF                      L
Sbjct: 252 GTVHIFA------AED-------PKRNKQSSLASASF----------------------L 276

Query: 343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYV 401
           PKYFSS+WSF++F +P  +  I AFG++ N V+ +  DGS+Y+  F+    GE  +  Y 
Sbjct: 277 PKYFSSKWSFSKFQVPSGSPCICAFGTEPNAVLAICADGSYYKFLFN--QKGECSRDVYA 334

Query: 402 RFLK 405
           +FL+
Sbjct: 335 QFLE 338

Gallus gallus (taxid: 9031)

>sp|Q9CR39|WIPI3_MOUSE WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45b PE=2 SV=2

 Score =  259 bits (663), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 208/363 (57%), Gaps = 41/363 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFT 223
           H  ET  N +GLC L  +S+ S+LA PG   G V++          ++  AH+  ++C  
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIA 192

Query: 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
           L L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct: 193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHG 252

Query: 284 TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343
           TVHIF+       ED       P ++ +    S+SF                      LP
Sbjct: 253 TVHIFA------AED-------PKRNKQSSLASASF----------------------LP 277

Query: 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR 402
           KYFSS+WSF++F +P  +  I AFG++ N V+ +  DGS+Y+  F P   GE ++    +
Sbjct: 278 KYFSSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKFLFSP--KGECVRDVCAQ 335

Query: 403 FLK 405
           FL+
Sbjct: 336 FLE 338

Mus musculus (taxid: 10090)

>sp|Q9Y484|WIPI4_HUMAN WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 185/365 (50%), Gaps = 56/365 (15%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGA 105
           + S+ +NQD  CF      G RIYN EP  E    D +  G   +VEML R N+LALVG 
Sbjct: 9   VTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGG 68

Query: 106 GDNSQYPPTKVIIWDD------HQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSF 159
           G + ++    V+IWDD       + + + EF F   V SV++  D+IV+VL+++IYVYSF
Sbjct: 69  GSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSF 128

Query: 160 VD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL------I 212
            D  + L + +T  N +GLC L       +L  PG + G +++                I
Sbjct: 129 PDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTI 188

Query: 213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN 272
           NAH S IAC +L   G ++A+AS +GTLIR+F+T    +L E+RRG D A +Y I  S +
Sbjct: 189 NAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHD 248

Query: 273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPG 332
             +L  +SDKGTVHIF+L+                                   T  N  
Sbjct: 249 SSFLCASSDKGTVHIFALK----------------------------------DTRLNRR 274

Query: 333 SSLSFMRGVLP---KYFSSEWSFAQFHIPEVTHFIAAFGSQ-----NTVVIVSMDGSFYR 384
           S+L+ +  V P   +Y  S+WS A F +P  +  I AFG       N+V+ + +DG+F++
Sbjct: 275 SALARVGKVGPMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHK 334

Query: 385 CSFDP 389
             F P
Sbjct: 335 YVFTP 339

Homo sapiens (taxid: 9606)

>sp|Q91VM3|WIPI4_MOUSE WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1

 Score =  195 bits (495), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/365 (34%), Positives = 184/365 (50%), Gaps = 56/365 (15%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGA 105
           + S+ +NQD  CF      G RIYN EP  E    D +  G   +VEML R N+LALVG 
Sbjct: 9   VTSLHFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVGG 68

Query: 106 GDNSQYPPTKVIIWDD------HQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSF 159
           G + ++    V+IWDD       + + + EF F   V +V++  D+IV+VL ++IYVYSF
Sbjct: 69  GSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYSF 128

Query: 160 VD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL------I 212
            D  + L + +T  N +GLC L       +L  PG + G +++                I
Sbjct: 129 PDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTI 188

Query: 213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN 272
           NAH S +AC +L   G ++A+AS +GTLIR+F+T    +L E+RRG D A +Y I  S +
Sbjct: 189 NAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHD 248

Query: 273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPG 332
             +L  +SDKGTVHIF+L+                                   T  N  
Sbjct: 249 SSFLCASSDKGTVHIFALK----------------------------------DTRLNRR 274

Query: 333 SSLSFMRGVLP---KYFSSEWSFAQFHIPEVTHFIAAFGSQ-----NTVVIVSMDGSFYR 384
           S+L+ +  V P   +Y  S+WS A F +P  +  I AFG       N+V+ + +DG+F++
Sbjct: 275 SALARVGKVGPMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHK 334

Query: 385 CSFDP 389
             F P
Sbjct: 335 YVFTP 339

Mus musculus (taxid: 10090)

>sp|Q6DCV0|WIPI4_XENLA WD repeat domain phosphoinositide-interacting protein 4 OS=Xenopus laevis GN=wdr45 PE=2 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 180/357 (50%), Gaps = 53/357 (14%)

Query: 52  WNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGDNSQ 110
           +NQD  CF      G RI+N EP  E    D +  G    VEML RCN+LALVG G N +
Sbjct: 12  FNQDQSCFCCAMETGVRIFNIEPLMEKGHLDQEQVGSVGQVEMLHRCNLLALVGGGSNPK 71

Query: 111 YPPTKVIIWDDH---QSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKL-LH 166
           +    V+IWDD    + + + EF F   V SV+L  D+IV+ L+++IYVYSF D    L 
Sbjct: 72  FSDISVLIWDDSRDGKDKLVLEFTFTKPVLSVRLRSDKIVIALKNRIYVYSFPDNPTKLF 131

Query: 167 QIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-----GLNMIKL-INAHDSHIA 220
           + +T  N +GLC L       +L  PG + G +++        G +     INAH S + 
Sbjct: 132 EFDTRDNPKGLCDLCPSLEKQLLIFPGHKCGSLQLVDLCNAKPGSSSAPFTINAHQSELG 191

Query: 221 CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS 280
           C  +   G L+A+AS +GTLIR+F+T    +L E+RRG D A +Y I  S +  +L  +S
Sbjct: 192 CLAINQQGTLVASASRKGTLIRLFDTQTREQLVELRRGTDPATLYCINFSHDSSFLCSSS 251

Query: 281 DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRG 340
           DKGTVHIF+L+                                   T  N  S+L+ +  
Sbjct: 252 DKGTVHIFALK----------------------------------DTKLNRRSALARVGK 277

Query: 341 VLP---KYFSSEWSFAQFHIPEVTHFIAAFGSQ-----NTVVIVSMDGSFYRCSFDP 389
           V P   +Y  S+WS A F +P  +  I AFG       N+V+ V +DG+F++  F P
Sbjct: 278 VGPMIGQYVDSQWSLASFTVPAESACICAFGKNTSKNVNSVIAVCVDGTFHKYVFTP 334

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
255559755	598	WD-repeat protein, putative [Ricinus com	0.980	0.673	0.814	0.0
224128009	411	predicted protein [Populus trichocarpa]	0.992	0.992	0.810	0.0
356509110	419	PREDICTED: WD repeat domain phosphoinosi	0.936	0.918	0.788	0.0
356516207	406	PREDICTED: WD repeat domain phosphoinosi	0.975	0.987	0.754	1e-177
297824019	404	hypothetical protein ARALYDRAFT_321769 [	0.982	1.0	0.729	1e-175
30688413	393	ATG18c-like protein [Arabidopsis thalian	0.956	1.0	0.731	1e-175
225448351	417	PREDICTED: WD repeat domain phosphoinosi	0.931	0.918	0.770	1e-173
242056259	417	hypothetical protein SORBIDRAFT_03g00465	0.992	0.978	0.711	1e-173
297816968	391	hypothetical protein ARALYDRAFT_486086 [	0.944	0.992	0.734	1e-173
2623295	369	hypothetical protein [Arabidopsis thalia	0.890	0.991	0.782	1e-172

>gi|255559755|ref|XP_002520897.1| WD-repeat protein, putative [Ricinus communis] gi|223540028|gb|EEF41606.1| WD-repeat protein, putative [Ricinus communis]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/416 (81%), Positives = 363/416 (87%), Gaps = 13/416 (3%)

Query: 1   MTSTVSTSREILPP---GPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYG 57
           MTSTVSTSR  LPP   G F SPN  AS S       PQ   SD  E++L+SVSWNQDYG
Sbjct: 191 MTSTVSTSRRFLPPIGHGSFESPNIIASGSLVP----PQ---SDSVEVDLLSVSWNQDYG 243

Query: 58  CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117
           CFAAGT+CGFRIYNCEPFKETFRRDLKSGGF+IVEMLFRCNILALVG   NSQ+PP KV+
Sbjct: 244 CFAAGTNCGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRCNILALVGRDSNSQHPPNKVL 303

Query: 118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGL 177
           IWDDHQSRCIGEF+FRS+VR+VKL RDRIVVVLEHKIYVYSF+DLKLLHQIETLAN RGL
Sbjct: 304 IWDDHQSRCIGEFSFRSEVRAVKLRRDRIVVVLEHKIYVYSFMDLKLLHQIETLANPRGL 363

Query: 178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR 237
           CCLSHHS+TSVLACPGL RGQVRIEHFGLN++KLINAHDSH+AC TLT+DGLLLATAS R
Sbjct: 364 CCLSHHSNTSVLACPGLHRGQVRIEHFGLNVMKLINAHDSHLACITLTMDGLLLATASIR 423

Query: 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297
           GTLIRIFNT+DGTRLQEVRRGVDRA+IY IALS NVQWLAV+SDKGTVHIFSLRVRV GE
Sbjct: 424 GTLIRIFNTMDGTRLQEVRRGVDRADIYGIALSTNVQWLAVSSDKGTVHIFSLRVRVAGE 483

Query: 298 DSSSSLSTPSQSTELLNHSSS--FDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF 355
           D SS  S+P Q   L N +SS   D LISPST ANPGSSLSFMRGVLPKYFSSEWSFAQF
Sbjct: 484 DPSSQ-SSPIQGPALQNQNSSNFLDALISPSTSANPGSSLSFMRGVLPKYFSSEWSFAQF 542

Query: 356 HIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR 411
           H+PE T FIAAFGSQNTV+IV MDGSFYRCSFDPVHGGEM+QQEYVRFLKT S PR
Sbjct: 543 HLPEDTQFIAAFGSQNTVIIVGMDGSFYRCSFDPVHGGEMMQQEYVRFLKTESTPR 598

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128009|ref|XP_002329232.1| predicted protein [Populus trichocarpa] gi|222871013|gb|EEF08144.1| predicted protein [Populus trichocarpa]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/412 (81%), Positives = 363/412 (88%), Gaps = 4/412 (0%)

Query: 1   MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFA 60
           M+STVSTS+  LP    GS  + ++  AS S G P+   +  +E+ELIS SWNQDYGCFA
Sbjct: 1   MSSTVSTSQGFLPQARHGSFES-SNVLASGSLGQPELESNGSNEVELISASWNQDYGCFA 59

Query: 61  AGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120
           AGTS GFRIYNCEPFKETFRRDLKSGGF+IVEMLFRCNILALVGA  NSQYPP KV+IWD
Sbjct: 60  AGTSHGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRCNILALVGADANSQYPPNKVLIWD 119

Query: 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180
           DHQSRCIGEF+FRS+VRSVKL RDRIVVVLEHK+YVY+F+DLKLLHQIETLAN RGLCCL
Sbjct: 120 DHQSRCIGEFSFRSEVRSVKLRRDRIVVVLEHKLYVYNFMDLKLLHQIETLANPRGLCCL 179

Query: 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL 240
           SH S+T VLACPGL RGQVRIEHFGLN++KLINAHDSHIAC TLT+DGLLLATASTRGTL
Sbjct: 180 SHDSNTFVLACPGLHRGQVRIEHFGLNVMKLINAHDSHIACLTLTMDGLLLATASTRGTL 239

Query: 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300
           IRIFNT+DGTRLQEVRRGVDRAEIY IALS NVQWLAV+SDKGTVHIFSLRVRV GEDSS
Sbjct: 240 IRIFNTMDGTRLQEVRRGVDRAEIYGIALSRNVQWLAVSSDKGTVHIFSLRVRVAGEDSS 299

Query: 301 SSLSTPSQSTELL--NHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIP 358
           S LS P+Q   LL  N SSS D LISPST ANPGSSLSFMRGVLPKYFSSEWSFAQFH+P
Sbjct: 300 SHLS-PAQGPALLEQNSSSSLDGLISPSTSANPGSSLSFMRGVLPKYFSSEWSFAQFHLP 358

Query: 359 EVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRP 410
           E T +IAAF SQNTV+IV M+GSFYRCSFDPVHGG+MLQQEYVRFL+T SRP
Sbjct: 359 EDTQYIAAFASQNTVIIVGMNGSFYRCSFDPVHGGQMLQQEYVRFLQTESRP 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509110|ref|XP_003523295.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Glycine max]

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/397 (78%), Positives = 342/397 (86%), Gaps = 12/397 (3%)

Query: 19  SPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKET 78
           SPN+GAS     SF  P    ++ DE +L+S+SWNQDYGCFAAGTS GFRIYNCEP KET
Sbjct: 31  SPNSGAS-----SFTQPIADMNENDETDLLSISWNQDYGCFAAGTSHGFRIYNCEPCKET 85

Query: 79  FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRS 138
           FRRDLKSGGF+IVEMLFRCNILALVGA  NS YPP KV+IWDDHQSRCIGEF FRSDVR 
Sbjct: 86  FRRDLKSGGFKIVEMLFRCNILALVGAVANSHYPPNKVLIWDDHQSRCIGEFTFRSDVRG 145

Query: 139 VKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ 198
           VKL RDRIVVVLEHKIYVY+F DLKLLHQIETLAN RGLCCLSHHS+T VLACPGL +G 
Sbjct: 146 VKLRRDRIVVVLEHKIYVYNFTDLKLLHQIETLANPRGLCCLSHHSNTFVLACPGLHKGH 205

Query: 199 VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG 258
           VR+EHFGLN+ KLINAHDS IACFTLTLDGLLLATAS +GTLIRIFNT+DG+RLQEVRRG
Sbjct: 206 VRVEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRG 265

Query: 259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPS--QSTELL--N 314
           VDRAEI SIALSPNVQWLA +SD+GTVH+FSLRVRV GED   SL+ P+  Q   L   N
Sbjct: 266 VDRAEINSIALSPNVQWLAASSDRGTVHVFSLRVRVSGED---SLTQPNAFQGPALFHQN 322

Query: 315 HSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVV 374
            SSS D LISP+TGANP SSLSFMRGVLPKYFSSEWSFAQFH+PE THFI AFGSQN+V+
Sbjct: 323 SSSSLDPLISPNTGANPNSSLSFMRGVLPKYFSSEWSFAQFHLPEYTHFIVAFGSQNSVI 382

Query: 375 IVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR 411
           IV MDGSFYRCSFD VHGGE++QQEYVRFLK  +RP+
Sbjct: 383 IVGMDGSFYRCSFDQVHGGEVVQQEYVRFLKFENRPK 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516207|ref|XP_003526787.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Glycine max]

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 314/416 (75%), Positives = 345/416 (82%), Gaps = 15/416 (3%)

Query: 1   MTSTVSTSREILPPGPFGS---PNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYG 57
           M+S+V TS+ I      GS   PN+GAS+S    F  P    ++ +E +L+S+SWNQDYG
Sbjct: 1   MSSSVLTSQGIFTTSRIGSSESPNSGASSS----FTQPMEDMNENEETDLLSISWNQDYG 56

Query: 58  CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117
           CFAAGTS GFRIYNCEP KETFRRDLKSGGF+IVEMLFRCNILALVGA  NS YPP KV+
Sbjct: 57  CFAAGTSHGFRIYNCEPCKETFRRDLKSGGFKIVEMLFRCNILALVGAVANSHYPPNKVL 116

Query: 118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGL 177
           IWDDHQSRCIGEF FRSDVR VKL RDRIVVVLEHKIYVY+F DLKLLHQIETLAN RGL
Sbjct: 117 IWDDHQSRCIGEFTFRSDVRGVKLRRDRIVVVLEHKIYVYNFTDLKLLHQIETLANPRGL 176

Query: 178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR 237
           CCLSH+S+T VLACPGL +GQVR+EHFGLN+ KLINAHDS IACFTLTLDGLLLATAS +
Sbjct: 177 CCLSHYSNTFVLACPGLHKGQVRVEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVK 236

Query: 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297
           GTLIRIFNT+DG+RLQEVRRGVDRAEI SIALSPNVQWLA +SDKGTVH+FSLRVRV GE
Sbjct: 237 GTLIRIFNTMDGSRLQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGE 296

Query: 298 DSSSSLSTPSQSTELL--NHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF 355
           DS +      Q   L   N SSS D LISP+TGANP SSLSFMRGVLPKYFSSEWSFAQF
Sbjct: 297 DSVTQ-PNAVQGPALFHQNSSSSLDPLISPNTGANPNSSLSFMRGVLPKYFSSEWSFAQF 355

Query: 356 HIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR 411
           H+PE T FI AFGSQN+V+IV MDG     SFD VHGGEM+QQEYVRFLK  +RPR
Sbjct: 356 HLPEYTPFIVAFGSQNSVIIVGMDG-----SFDQVHGGEMVQQEYVRFLKFENRPR 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824019|ref|XP_002879892.1| hypothetical protein ARALYDRAFT_321769 [Arabidopsis lyrata subsp. lyrata] gi|297325731|gb|EFH56151.1| hypothetical protein ARALYDRAFT_321769 [Arabidopsis lyrata subsp. lyrata]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/411 (72%), Positives = 347/411 (84%), Gaps = 7/411 (1%)

Query: 1   MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFA 60
           M+STVS  + IL  G +    +G  + ++ + G    + ++ DE EL+SV WNQD  CFA
Sbjct: 1   MSSTVSNPQGILQQGGY----SGHDSRSNITSGSESESINN-DEAELVSVCWNQDSSCFA 55

Query: 61  AGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120
           AGTS GFRIYNC+PFKETFRR+LK+GGF+IVEMLFR NILALVG G NSQYP  KV+IWD
Sbjct: 56  AGTSHGFRIYNCQPFKETFRRELKNGGFKIVEMLFRSNILALVGGGANSQYPSNKVLIWD 115

Query: 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180
           DHQSRCI EFAFRS++R+VKL RDRIVVVLEHKIYVY+F+DL+LLHQIET AN RGLCCL
Sbjct: 116 DHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQIETQANPRGLCCL 175

Query: 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL 240
           SHHS+TSVLACPGL RG++R+EHFGLNM+++INAHDS IAC TLTLDGLLLATAST+GTL
Sbjct: 176 SHHSNTSVLACPGLHRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDGLLLATASTKGTL 235

Query: 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300
           IRIFNT+DGTRLQEVRRGVDRA+IYSIALSPNVQWLAV+SDKGTVHIFSLRVRVVGEDS 
Sbjct: 236 IRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVVGEDSY 295

Query: 301 SSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEV 360
           S+ +    + +   +S+S   L+SP+TG NPGSSLSFMRGVLPKYFSSEWS+AQFH+ EV
Sbjct: 296 STENAALLTQQ--TYSTSLQGLVSPTTGTNPGSSLSFMRGVLPKYFSSEWSYAQFHVSEV 353

Query: 361 THFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR 411
           T F AAFGS NTV I+ MDGSFYRCSFDPV+GGEM Q EY  FLKT +R R
Sbjct: 354 TQFFAAFGSNNTVAIIGMDGSFYRCSFDPVNGGEMGQLEYFHFLKTDNRRR 404

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688413|ref|NP_181613.2| ATG18c-like protein [Arabidopsis thaliana] gi|42571153|ref|NP_973650.1| ATG18c-like protein [Arabidopsis thaliana] gi|26450478|dbj|BAC42353.1| unknown protein [Arabidopsis thaliana] gi|114050621|gb|ABI49460.1| At2g40810 [Arabidopsis thaliana] gi|330254788|gb|AEC09882.1| ATG18c-like protein [Arabidopsis thaliana] gi|330254789|gb|AEC09883.1| ATG18c-like protein [Arabidopsis thaliana]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/410 (73%), Positives = 342/410 (83%), Gaps = 17/410 (4%)

Query: 1   MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFA 60
           M+STVS  + IL PG               SF  P++     +E EL+SV WNQD  CFA
Sbjct: 1   MSSTVSNPQGILQPG---------------SFLLPESESMKKEEAELVSVCWNQDSSCFA 45

Query: 61  AGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120
           AGTS GFRIYNCEPFKETFRR+LK GGF+IVEMLFR NILALVG G NSQYP +KV+IWD
Sbjct: 46  AGTSHGFRIYNCEPFKETFRRELKDGGFKIVEMLFRSNILALVGGGPNSQYPSSKVLIWD 105

Query: 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180
           DHQSRCI EFAFRS++R+VKL RDRIVVVLEHKIYVY+F+DL+LLHQIET AN RGLCCL
Sbjct: 106 DHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQIETQANPRGLCCL 165

Query: 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL 240
           SHHS+TSVLACPGL RG++R+EHFGLNM+++INAHDS IAC TLTLDGLLLATAST+GTL
Sbjct: 166 SHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDGLLLATASTKGTL 225

Query: 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300
           IRIFNT+DGTRLQEVRRGVDRA+IYSIALSPNVQWLAV+SDKGTVHIFSLRVRVVGEDS 
Sbjct: 226 IRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVVGEDSY 285

Query: 301 SSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEV 360
           S+ +    + +  N+S+S   L+SP+ G NPGSSLSFMRGVLPKYFSSEWS+AQFH+ EV
Sbjct: 286 STENGALLTQQ--NYSNSLQGLVSPTIGTNPGSSLSFMRGVLPKYFSSEWSYAQFHVSEV 343

Query: 361 THFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRP 410
           T F AAFGS NTV I+ MDGSFYRCSFDPV+GGEM Q EY+ F+K  +RP
Sbjct: 344 TQFFAAFGSNNTVAIIGMDGSFYRCSFDPVNGGEMGQLEYIHFMKMDNRP 393

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448351|ref|XP_002267266.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Vitis vinifera]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/384 (77%), Positives = 332/384 (86%), Gaps = 1/384 (0%)

Query: 23  GASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRD 82
           G+++    SFG     F+D DE  L+SVSWNQD+GCFAAGT+ GFRIY+C+PFKE FRRD
Sbjct: 28  GSNSGTPGSFGQSVPEFNDTDETGLLSVSWNQDHGCFAAGTTHGFRIYSCDPFKEIFRRD 87

Query: 83  LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS 142
           LKSGGF IVEMLFR NILALVGAG NSQYPP+KVIIWDD++ RCIGEF+FRSDVR+VKL 
Sbjct: 88  LKSGGFGIVEMLFRSNILALVGAGTNSQYPPSKVIIWDDYERRCIGEFSFRSDVRAVKLR 147

Query: 143 RDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE 202
           RDRIVVV+EHKIYVY+F DLKLL QIETLAN RGLCCLSHHS+T VLACPGLQRG VRIE
Sbjct: 148 RDRIVVVVEHKIYVYNFTDLKLLQQIETLANPRGLCCLSHHSNTFVLACPGLQRGLVRIE 207

Query: 203 HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA 262
           HFGLNM KLI AHDSH+AC TLT+DGLLLA+AS +GTLIRIFNT+DGTRLQEVRRG D A
Sbjct: 208 HFGLNMTKLIKAHDSHVACLTLTMDGLLLASASMKGTLIRIFNTMDGTRLQEVRRGSDNA 267

Query: 263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSS-SLSTPSQSTELLNHSSSFDT 321
           EIYSIALSPNVQWLAV+S+KGTVHIF+LRVRVVGEDSS+ S++    +    N S+S D 
Sbjct: 268 EIYSIALSPNVQWLAVSSEKGTVHIFNLRVRVVGEDSSNHSITAQGPAPFYRNSSNSLDA 327

Query: 322 LISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGS 381
           LISP+ GANPGSSLSFM+G LPKYFSSEWSFAQF +PE T FIA FGSQNTV+IV MDGS
Sbjct: 328 LISPNAGANPGSSLSFMKGFLPKYFSSEWSFAQFRVPEDTQFIATFGSQNTVIIVGMDGS 387

Query: 382 FYRCSFDPVHGGEMLQQEYVRFLK 405
           FYRCSFD ++GGEMLQQEY  FLK
Sbjct: 388 FYRCSFDHLNGGEMLQQEYHSFLK 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242056259|ref|XP_002457275.1| hypothetical protein SORBIDRAFT_03g004650 [Sorghum bicolor] gi|241929250|gb|EES02395.1| hypothetical protein SORBIDRAFT_03g004650 [Sorghum bicolor]

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 294/413 (71%), Positives = 345/413 (83%), Gaps = 5/413 (1%)

Query: 1   MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFA 60
           M+S VSTSR + PPG  G+  +  +    A    P+    D  E+ L+SV+WNQD GCFA
Sbjct: 1   MSSQVSTSRGLHPPGKLGTFESPHAWPLPAPTAQPEAGRGDDQEVRLLSVAWNQDCGCFA 60

Query: 61  AGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120
           AGTS GFRI+NCEPFKETFRRDLKSGGF IVEMLFRCNILALVG G N QYPP KV+IWD
Sbjct: 61  AGTSNGFRIFNCEPFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNVQYPPNKVMIWD 120

Query: 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180
           DHQSRCIGEFAFRSDVR+VKL++D IV+VLE KI+VY+F DLKLL+QI+TL+N +GLCCL
Sbjct: 121 DHQSRCIGEFAFRSDVRAVKLAKDYIVIVLERKIFVYNFTDLKLLYQIDTLSNPKGLCCL 180

Query: 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL 240
           SHHS+TSVLACPG+ +G VR+EHFGL M K I AHDSHI+C +LT+DGLLLATAS++GTL
Sbjct: 181 SHHSNTSVLACPGVHQGHVRVEHFGLKMAKTIPAHDSHISCMSLTMDGLLLATASSKGTL 240

Query: 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300
           IRIFNT+DGTRLQEVRRG+D+AEIYSIALSPNVQWLAV+SDKGTVHIFSLRVRV GED+S
Sbjct: 241 IRIFNTMDGTRLQEVRRGLDKAEIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVAGEDAS 300

Query: 301 S---SLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHI 357
           S   +L  P    +  N SSS D LI  +TG+N  SSLSFMRG+LPKYFSSEWSFAQFH+
Sbjct: 301 SEQRALEGPRMDHQ--NSSSSIDPLIQANTGSNASSSLSFMRGILPKYFSSEWSFAQFHL 358

Query: 358 PEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRP 410
           PEVT +I AFG+QNTV++V +DGSFYRCSFD V+GG+MLQ+EY RFLK+ + P
Sbjct: 359 PEVTRYIVAFGAQNTVMMVGLDGSFYRCSFDQVNGGQMLQKEYFRFLKSDNPP 411

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816968|ref|XP_002876367.1| hypothetical protein ARALYDRAFT_486086 [Arabidopsis lyrata subsp. lyrata] gi|297322205|gb|EFH52626.1| hypothetical protein ARALYDRAFT_486086 [Arabidopsis lyrata subsp. lyrata]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/403 (73%), Positives = 339/403 (84%), Gaps = 15/403 (3%)

Query: 9   REILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFR 68
           R    PG + S N       S SFG P   F + DE EL+SVSWNQDY CFAAGTS GFR
Sbjct: 4   RRNFQPGGYDSRNT----FTSGSFGPPD--FGESDEAELVSVSWNQDYSCFAAGTSHGFR 57

Query: 69  IYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG 128
           IYNCEPFKETFRR+LK GGF+IVEMLFR NILALVG G NSQYP  KV+IWDDHQSRCI 
Sbjct: 58  IYNCEPFKETFRRELKGGGFKIVEMLFRSNILALVGGGPNSQYPSNKVLIWDDHQSRCIS 117

Query: 129 EFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188
           EF FRS++R+VKL RDRIVVVLEHKIYVY+F+DL+LLHQIE LAN RGLCCLSHH +TSV
Sbjct: 118 EFTFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQIENLANPRGLCCLSHHMNTSV 177

Query: 189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248
           LACPG++RG+VR+EHFGLNM+++INAHDS++AC T+TLDGLLLATAST+GTLIRIFNT+D
Sbjct: 178 LACPGIRRGEVRVEHFGLNMVQIINAHDSNLACMTMTLDGLLLATASTKGTLIRIFNTMD 237

Query: 249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQ 308
           GTRLQEVRRGVDRA+IYSIALSPN+QWLAV+SDKGTVHIFSLRVRV+GED        + 
Sbjct: 238 GTRLQEVRRGVDRADIYSIALSPNMQWLAVSSDKGTVHIFSLRVRVIGED--------AY 289

Query: 309 STELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFG 368
           STE    S+S   L+SP++GANPGSSLSF+RGVLPKYFSSEWSFAQFH+PEVT + AAFG
Sbjct: 290 STEHETSSNSMQPLVSPASGANPGSSLSFLRGVLPKYFSSEWSFAQFHVPEVTQYFAAFG 349

Query: 369 SQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR 411
           +QNT+ I+ MDGSFYRC+FDPV+GGEM Q E+  FLK  S PR
Sbjct: 350 AQNTIAIIGMDGSFYRCNFDPVNGGEMTQLEHFHFLKPDS-PR 391

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2623295|gb|AAB86441.1| hypothetical protein [Arabidopsis thaliana]

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 288/368 (78%), Positives = 326/368 (88%), Gaps = 2/368 (0%)

Query: 43  DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL 102
           +E EL+SV WNQD  CFAAGTS GFRIYNCEPFKETFRR+LK GGF+IVEMLFR NILAL
Sbjct: 4   EEAELVSVCWNQDSSCFAAGTSHGFRIYNCEPFKETFRRELKDGGFKIVEMLFRSNILAL 63

Query: 103 VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDL 162
           VG G NSQYP +KV+IWDDHQSRCI EFAFRS++R+VKL RDRIVVVLEHKIYVY+F+DL
Sbjct: 64  VGGGPNSQYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDL 123

Query: 163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACF 222
           +LLHQIET AN RGLCCLSHHS+TSVLACPGL RG++R+EHFGLNM+++INAHDS IAC 
Sbjct: 124 RLLHQIETQANPRGLCCLSHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINAHDSSIACM 183

Query: 223 TLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282
           TLTLDGLLLATAST+GTLIRIFNT+DGTRLQEVRRGVDRA+IYSIALSPNVQWLAV+SDK
Sbjct: 184 TLTLDGLLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAVSSDK 243

Query: 283 GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL 342
           GTVHIFSLRVRVVGEDS S+ +    + +  N+S+S   L+SP+ G NPGSSLSFMRGVL
Sbjct: 244 GTVHIFSLRVRVVGEDSYSTENGALLTQQ--NYSNSLQGLVSPTIGTNPGSSLSFMRGVL 301

Query: 343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR 402
           PKYFSSEWS+AQFH+ EVT F AAFGS NTV I+ MDGSFYRCSFDPV+GGEM Q EY+ 
Sbjct: 302 PKYFSSEWSYAQFHVSEVTQFFAAFGSNNTVAIIGMDGSFYRCSFDPVNGGEMGQLEYIH 361

Query: 403 FLKTVSRP 410
           F+K  +RP
Sbjct: 362 FMKMDNRP 369

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
TAIR|locus:2058450	393	ATG18C "AT2G40810" [Arabidopsi	0.909	0.951	0.726	2.3e-149
TAIR|locus:2102614	391	ATG18D "homolog of yeast autop	0.885	0.930	0.723	4.3e-148
UNIPROTKB|Q5VQF8	417	OJ1276_B06.19 "Putative unchar	0.997	0.983	0.652	1.1e-144
TAIR|locus:2081705	425	AtATG18a "autophagy 18a" [Arab	0.598	0.578	0.643	4.3e-113
UNIPROTKB|Q8LR61	457	P0423A12.30 "Putative WD repea	0.605	0.544	0.602	5.6e-109
UNIPROTKB|Q0DKE9	382	Os05g0169200 "Os05g0169200 pro	0.888	0.955	0.555	1e-107
TAIR|locus:2156779	374	G18E "AT5G05150" [Arabidopsis	0.620	0.681	0.486	3.5e-86
DICTYBASE|DDB_G0282581	350	wdr45l "WD repeat domain phosp	0.588	0.691	0.495	5.3e-73
UNIPROTKB|Q640T2	344	wdr45b "WD repeat domain phosp	0.591	0.706	0.434	4.8e-64
UNIPROTKB|Q5MNZ6	344	WDR45B "WD repeat domain phosp	0.591	0.706	0.430	9.9e-64

TAIR|locus:2058450 ATG18C "AT2G40810" [Arabidopsis thaliana (taxid:3702)]

 Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
 Identities = 273/376 (72%), Positives = 310/376 (82%)

Query:    35 PQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEML 94
             P++     +E EL+SV WNQD  CFAAGTS GFRIYNCEPFKETFRR+LK GGF+IVEML
Sbjct:    20 PESESMKKEEAELVSVCWNQDSSCFAAGTSHGFRIYNCEPFKETFRRELKDGGFKIVEML 79

Query:    95 FRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKI 154
             FR NILALVG G NSQYP +KV+IWDDHQSRCI EFAFRS++R+VKL RDRIVVVLEHKI
Sbjct:    80 FRSNILALVGGGPNSQYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKI 139

Query:   155 YVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA 214
             YVY+F+DL+LLHQIET AN RGLCCLSHHS+TSVLACPGL RG++R+EHFGLNM+++INA
Sbjct:   140 YVYNFMDLRLLHQIETQANPRGLCCLSHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINA 199

Query:   215 HDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ 274
             HDS IAC               +GTLIRIFNT+DGTRLQEVRRGVDRA+IYSIALSPNVQ
Sbjct:   200 HDSSIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQ 259

Query:   275 WLAVASDKGTVHIFSLRVRVVGEDXXXXXXXXXXXTELLNHSSSFDTLISPSTGANPGSS 334
             WLAV+SDKGTVHIFSLRVRVVGED            +  N+S+S   L+SP+ G NPGSS
Sbjct:   260 WLAVSSDKGTVHIFSLRVRVVGEDSYSTENGALLTQQ--NYSNSLQGLVSPTIGTNPGSS 317

Query:   335 LSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGE 394
             LSFMRGVLPKYFSSEWS+AQFH+ EVT F AAFGS NTV I+ MDGSFYRCSFDPV+GGE
Sbjct:   318 LSFMRGVLPKYFSSEWSYAQFHVSEVTQFFAAFGSNNTVAIIGMDGSFYRCSFDPVNGGE 377

Query:   395 MLQQEYVRFLKTVSRP 410
             M Q EY+ F+K  +RP
Sbjct:   378 MGQLEYIHFMKMDNRP 393

GO:0003674 "molecular_function" evidence=ND

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2102614 ATG18D "homolog of yeast autophagy 18 (ATG18) D" [Arabidopsis thaliana (taxid:3702)]

 Score = 1446 (514.1 bits), Expect = 4.3e-148, P = 4.3e-148
 Identities = 270/373 (72%), Positives = 311/373 (83%)

Query:    39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN 98
             F + DE EL+SVSWNQDY CFAAGTS GFRIYNCEPFKETFRR+LK GGF+IVEMLFR N
Sbjct:    28 FGESDEAELVSVSWNQDYSCFAAGTSHGFRIYNCEPFKETFRRELKDGGFKIVEMLFRSN 87

Query:    99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYS 158
             ILALVG G NSQYP  KV+IWDDHQ RCI EF FRS++R+VKL RDRIVVVLEHKIYVY+
Sbjct:    88 ILALVGGGPNSQYPSNKVLIWDDHQGRCISEFTFRSEIRAVKLRRDRIVVVLEHKIYVYN 147

Query:   159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSH 218
             F+DL+LLHQIE +AN RGLCCLSHH +TSVLACPG++RG+VR+EHFGLNM+++INAHDS+
Sbjct:   148 FMDLRLLHQIENMANPRGLCCLSHHMNTSVLACPGIRRGEVRVEHFGLNMVQIINAHDSN 207

Query:   219 IACFXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278
             IAC               +GTLIRIFNT+DGTRLQEVRRGVDRA+IYSIALSPNVQWLAV
Sbjct:   208 IACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAV 267

Query:   279 ASDKGTVHIFSLRVRVVGEDXXXXXXXXXXXTELLNHSSSFDTLISPSTGANPGSSLSFM 338
             +SDKGTVHIFSLRVRV+GED           TE    S+S   L+SP++GANPGSSLSF+
Sbjct:   268 SSDKGTVHIFSLRVRVIGEDAYS--------TEHETSSNSLQPLVSPASGANPGSSLSFL 319

Query:   339 RGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQ 398
             RGVLPKYFSSEWSF+QFH+PEVT + AAFG+QNT+ I+ +DGSFYRC+FDPV+GGEM Q 
Sbjct:   320 RGVLPKYFSSEWSFSQFHVPEVTQYFAAFGAQNTIAIIGLDGSFYRCNFDPVNGGEMTQL 379

Query:   399 EYVRFLKTVSRPR 411
             E+  FLK  S PR
Sbjct:   380 EHFHFLKQDS-PR 391

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q5VQF8 OJ1276_B06.19 "Putative uncharacterized protein OJ1276_B06.19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
 Identities = 268/411 (65%), Positives = 315/411 (76%)

Query:     1 MTSTVSTSREILXXXXXXXXXXXXXXXXXXXXXHPQTAFSDVDEIELISVSWNQDYGCFA 60
             M+S VSTSR +                        +   SD  +I L+SVSWNQD+GCFA
Sbjct:     1 MSSQVSTSRGLPSPSKLGTFESPHTWQMSGPTGQAEAGSSDDQDIRLLSVSWNQDFGCFA 60

Query:    61 AGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120
             AGTS GFRI+NC+PFKETFRRDLKSGGF IVEMLFRCNILALVG G N+ YPP KV+IWD
Sbjct:    61 AGTSNGFRIFNCDPFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNAHYPPNKVMIWD 120

Query:   121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180
             DH+S CIGEFAFRSDVR+VKL +D IV+VLE KIYVY+F DLKLLHQIET +N +GLCCL
Sbjct:   121 DHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQIETQSNPKGLCCL 180

Query:   181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTL 240
             SHHS+TSVLACPG+ +G VR+EHFGL + ++I+AHDSHI+C               +GTL
Sbjct:   181 SHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISCMALTMDGLLLATASMKGTL 240

Query:   241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDXX 300
             IRIFNT+DGTRLQEVRRG+D+A+IYSIALSPNVQWLAV+SDKGTVHIFSLRVRV GED  
Sbjct:   241 IRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVAGEDAS 300

Query:   301 XXXXXXXX-XTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPE 359
                        +  N SSS D LI  +TG+N  SSLSFM+G+LPKYFSSEWSFAQFH+PE
Sbjct:   301 NEQRSLEGPRMDHQNSSSSIDPLIQTNTGSNASSSLSFMKGILPKYFSSEWSFAQFHLPE 360

Query:   360 VTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRP 410
             VT +I AFG+QNTV++V +DGSFYRCSFD V+GG+MLQ+EY RF+K    P
Sbjct:   361 VTRYIVAFGAQNTVMMVGLDGSFYRCSFDQVNGGQMLQKEYFRFIKADLTP 411

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2081705 AtATG18a "autophagy 18a" [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 4.3e-113, Sum P(2) = 4.3e-113
 Identities = 159/247 (64%), Positives = 189/247 (76%)

Query:    47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFRCNILALVGA 105
             ++ +S+NQD+ CFA GT  GFRI NC+PF+E FRRD  + GG  +VEMLFRCNILALVG 
Sbjct:    78 VLHLSFNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGG 137

Query:   106 GDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLL 165
             G + QYPP KV+IWDDHQ RCIGE +FRSDVRSV+L RDRI+VVLE KI+VY+F DLKL+
Sbjct:   138 GPDPQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLM 197

Query:   166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFXXX 225
             HQIET+AN +GLC +S    + VL CPGLQ+GQVRIEH+     K + AHDS IACF   
Sbjct:   198 HQIETIANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIACFALT 257

Query:   226 XXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV 285
                        +GTL+RIFNTVDGT  QEVRRG DRAEIYS+A S N QWLAV+SDKGTV
Sbjct:   258 QDGHLLATASSKGTLVRIFNTVDGTLRQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 317

Query:   286 HIFSLRV 292
             H+F L+V
Sbjct:   318 HVFGLKV 324

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0031090 "organelle membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006914 "autophagy" evidence=RCA;IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0042594 "response to starvation" evidence=IEP;IMP

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0048102 "autophagic cell death" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

UNIPROTKB|Q8LR61 P0423A12.30 "Putative WD repeat domain 45" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 843 (301.8 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
 Identities = 156/259 (60%), Positives = 192/259 (74%)

Query:    46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS----------GGFRIVEMLF 95
             +L+ +S+NQDYGCFAAGT  GFRIYNC+PF+E FRRDL +          GG  +VEMLF
Sbjct:    98 DLLHISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGVVEMLF 157

Query:    96 RCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIY 155
             RCNILALVG GD   YPP KV+IWDDHQSRCIGE +FRS VR V+L RDRI+VVLE+KI+
Sbjct:   158 RCNILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVLENKIF 217

Query:   156 VYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH 215
             VY+F DLKL+HQIET  N +GLC +S    + VL CPG Q+GQVR+EH+G    K INAH
Sbjct:   218 VYNFADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTKFINAH 277

Query:   216 DSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW 275
              S +ACF              +GTL+RI+N  +G  LQEVRRG DRAEIYS+A S N+Q+
Sbjct:   278 TSRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFSNNLQY 337

Query:   276 LAVASDKGTVHIFSLRVRV 294
             LAV+SDKGT+H+F+L++ V
Sbjct:   338 LAVSSDKGTIHVFNLKINV 356

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q0DKE9 Os05g0169200 "Os05g0169200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
 Identities = 205/369 (55%), Positives = 260/369 (70%)

Query:    40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFRCN 98
             SD D +EL+SVSWNQD  CF A T+ GFR+++C+PF ET RR    +GG  I EMLFR +
Sbjct:    10 SDDDGVELLSVSWNQDNSCFIAATTNGFRVFSCKPFHETMRRMFGPNGGIGIAEMLFRTS 69

Query:    99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYS 158
             I  L GA  N+++PPT + +WDD+  R I ++ F S++R+V+LS+D  VVVLE  I VY 
Sbjct:    70 IFGLAGAESNTEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEKTINVYR 129

Query:   159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSH 218
             F DL+L +Q  T++N  GLCCLSHH++ SV ACPG  +GQV IEHFGL   + I AHDS 
Sbjct:   130 FKDLRLFYQARTVSNPNGLCCLSHHANASVFACPGTSKGQVLIEHFGLKETRFIAAHDSP 189

Query:   219 IACFXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278
             ++C               RGTLIRIFNT DGT +QEVRRG+DRAEIYSIALSPNVQWLAV
Sbjct:   190 LSCMTMALDGTLLATASVRGTLIRIFNTRDGTCVQEVRRGLDRAEIYSIALSPNVQWLAV 249

Query:   279 ASDKGTVHIFSLRVRVVGEDXXXXXXXXXXX--TELLNHSSSFDTLISPSTGANPGSSLS 336
             +SDKGTVH+FSLRV+   ED              +  N+ S+   +     G+N  SSLS
Sbjct:   250 SSDKGTVHVFSLRVKDAEEDAKKGESATAGAQVNDNCNYGSTVP-VTQTKIGSNTSSSLS 308

Query:   337 FMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEML 396
             FM+G+LPKYFSSEWSFAQF +PE+T +I AFG Q+TV+++ +DGSFYR SFDPV+GGEM+
Sbjct:   309 FMKGILPKYFSSEWSFAQFRLPEITRYIMAFGDQDTVMMIGLDGSFYRYSFDPVNGGEMM 368

Query:   397 QQEYVRFLK 405
              +EY  FLK
Sbjct:   369 LKEYHLFLK 377

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2156779 G18E "AT5G05150" [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
 Identities = 125/257 (48%), Positives = 178/257 (69%)

Query:    44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILAL 102
             +++++SV+WNQ    F  GT+ GF +Y+C+P  K++  R     GF++ EMLF  N+ A 
Sbjct:    30 DLKVLSVAWNQVCSGFIVGTNHGFNVYSCKPMIKKSISRAPHESGFKVAEMLFLSNLFAF 89

Query:   103 VGAG-DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVD 161
             VG G +NS+YPP KV +WDD+++ C+ E  F+S+V +VKL+R+ +VVVL+  IYVY+F +
Sbjct:    90 VGNGYNNSEYPPNKVFVWDDYRNCCLSELTFKSEVIAVKLAREHVVVVLKQNIYVYTFNN 149

Query:   162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIAC 221
             LK+   IETL N +GLCC++H  S +VLACPG   GQV++     N+IK I AHDS IAC
Sbjct:   150 LKVDRVIETLMNPKGLCCVTHVESKAVLACPGFHPGQVQVHDLRWNVIKFIKAHDSAIAC 209

Query:   222 FXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD 281
                            +GTLIRIFN VDGT LQE RRGV+RAEIY++A+S N++W+A +S+
Sbjct:   210 MTLTLDGSLLATASTKGTLIRIFNAVDGTLLQEFRRGVERAEIYNVAISSNLKWVAASSE 269

Query:   282 KGTVHIFSLRVRVVGED 298
             KGT+H+F LR  ++  D
Sbjct:   270 KGTLHVFRLRPDILSFD 286

GO:0006914 "autophagy" evidence=IBA

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006863 "purine nucleobase transport" evidence=RCA

DICTYBASE|DDB_G0282581 wdr45l "WD repeat domain phosphoinositide-interacting protein 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 633 (227.9 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
 Identities = 121/244 (49%), Positives = 170/244 (69%)

Query:    47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
             L+  ++NQDY CFA GT  GF I++C+PFKE F R +  GG  IVEMLFRCNILA+VG G
Sbjct:    13 LLFANFNQDYSCFACGTEKGFLIFSCDPFKERFGR-VFDGGVGIVEMLFRCNILAIVGGG 71

Query:   107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLH 166
                +Y P +V+IWDD+Q++CI +  F+S+V++VKL RDRIVVVLE+K+Y+Y+F DL+L+H
Sbjct:    72 KKPRYTPNQVMIWDDYQNKCIAKLEFKSEVKAVKLRRDRIVVVLENKVYLYNFSDLQLVH 131

Query:   167 QIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFXXXX 226
             Q+ET  N +G+C +    + +VLACPGL+ G V +E + L   ++I AH+  ++      
Sbjct:   132 QLETTNNPKGICAICP-GTVNVLACPGLKPGYVHVELYDLKQTQIIPAHEGALSQIALNK 190

Query:   227 XXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVH 286
                       +GTLIRIF+T  G +++E+RRG +RAEIYSIA + +   L V+SDK T H
Sbjct:   191 DGTLLATASEKGTLIRIFDTATGEKVKELRRGTNRAEIYSIAFNNDSTALCVSSDKNTGH 250

Query:   287 IFSL 290
             IF L
Sbjct:   251 IFDL 254

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q640T2 wdr45b "WD repeat domain phosphoinositide-interacting protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 515 (186.3 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
 Identities = 107/246 (43%), Positives = 147/246 (59%)

Query:    47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
             L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct:    13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGYVEMLFRCNYLALVGGG 72

Query:   107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
                +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct:    73 KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query:   166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFX 223
             H  ET  N +GLC L  +S+ S+LA PG   G V+I          ++  AH+  ++C  
Sbjct:   133 HVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIA 192

Query:   224 XXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
                          +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct:   193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDHG 252

Query:   284 TVHIFS 289
             TVHIF+
Sbjct:   253 TVHIFA 258

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q5MNZ6 WDR45B "WD repeat domain phosphoinositide-interacting protein 3" [Homo sapiens (taxid:9606)]

 Score = 511 (184.9 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
 Identities = 106/246 (43%), Positives = 147/246 (59%)

Query:    47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
             L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct:    13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGG 72

Query:   107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
                +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct:    73 KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query:   166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFX 223
             H  ET  N +GLC L  +S+ S+LA PG   G V++          ++  AH+  ++C  
Sbjct:   133 HVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIA 192

Query:   224 XXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
                          +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct:   193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHG 252

Query:   284 TVHIFS 289
             TVHIF+
Sbjct:   253 TVHIFA 258

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6C044	ATG18_YARLI	No assigned EC number	0.3419	0.8004	0.8225	yes	no
P0CS28	ATG18_CRYNJ	No assigned EC number	0.3308	0.8564	0.8321	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.125.193.1 hypothetical protein (368 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	411
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 16/193 (8%)

Query: 102 LVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSD-VRSVKLSRDRIVVV---LEHKIYVY 157
           L  +  +       + +WD    +C+      +D V SV  S D   V     +  I ++
Sbjct: 108 LSSSSRDK-----TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 158 SFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHD 216
                K +  +                   +L+      G +++ +      +  +  H+
Sbjct: 163 DLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKCLGTLRGHE 219

Query: 217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL 276
           + +     + DG LLA+ S  GT IR+++   G  +Q +        + S+A SP+ + L
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRL 276

Query: 277 AVASDKGTVHIFS 289
           A  S  GT+ I+ 
Sbjct: 277 ASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 38/183 (20%), Positives = 74/183 (40%), Gaps = 15/183 (8%)

Query: 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL 171
           + +WD     C+       S V SV  S D  ++     +  I V+     K L  +   
Sbjct: 75  IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-- 132

Query: 172 ANLRGLCCLSHHSSTSVLACPGLQRGQVRI---EHFGLNMIKLINAHDSHIACFTLTLDG 228
            +   +  ++     + +A    Q G +++          +  +  H   +     + DG
Sbjct: 133 GHTDWVNSVAFSPDGTFVAS-SSQDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDG 189

Query: 229 LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288
             L ++S+ GT I++++   G  L  +R       + S+A SP+   LA  S+ GT+ ++
Sbjct: 190 EKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Query: 289 SLR 291
            LR
Sbjct: 247 DLR 249

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 62/354 (17%), Positives = 118/354 (33%), Gaps = 37/354 (10%)

Query: 43  DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC----N 98
           D I  I+ S + +    +  +    ++++ +  ++  +         + ++        +
Sbjct: 66  DSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS 124

Query: 99  ILALVGAGDNSQYPPTKVIIWD-DHQSRCIGEF-AFRSDVRSVKLSRDRIVVVLE----H 152
           IL    + D +      V +WD     + I         V S+  S D  ++        
Sbjct: 125 ILLASSSLDGT------VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178

Query: 153 KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI---EHFGLNMI 209
            I ++     K L  +    +   +  L+      +L   G   G +R+       L   
Sbjct: 179 TIKLWDLRTGKPLSTLAG--HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236

Query: 210 KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269
            L    DS ++ F+   DG LLA+ S+ GT IR+++    + L     G   + + S+A 
Sbjct: 237 TLSGHSDSVVSSFSP--DGSLLASGSSDGT-IRLWDLRSSSSLLRTLSG-HSSSVLSVAF 292

Query: 270 SPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGA 329
           SP+ + LA  S  GTV ++ L                  S  L  H     +L     G+
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLE-----------TGKLLSSLTLKGHEGPVSSLSFSPDGS 341

Query: 330 NPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFY 383
              S  S    +      +               ++       V   S DG+  
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVR 395

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 53/271 (19%), Positives = 102/271 (37%), Gaps = 20/271 (7%)

Query: 49  SVSWNQDYGCFAAGTSCGF--RIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           S++++ D G   A  S     R+++    K    R   SG    V   F  +   L    
Sbjct: 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL--RSTLSGHSDSVVSSFSPDGSLLASGS 260

Query: 107 DNSQYPPTKVIIWD-DHQSRCIGEFAFRSD-VRSVKLSRDRIVVV---LEHKIYVYSFVD 161
            +       + +WD    S  +   +  S  V SV  S D  ++     +  + ++    
Sbjct: 261 SDG-----TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Query: 162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIAC 221
            KLL  +    +   +  LS     S+L   G   G +R+               S++  
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS 375

Query: 222 FTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD 281
            + + DG ++++ ST GT +R+++   G+ L+ +     R  + S+  SP+ + LA  S 
Sbjct: 376 VSFSPDGRVVSSGSTDGT-VRLWDLSTGSLLRNLDGHTSR--VTSLDFSPDGKSLASGSS 432

Query: 282 KGTV---HIFSLRVRVVGEDSSSSLSTPSQS 309
             T+    + +    V        L++ S  
Sbjct: 433 DNTIRLWDLKTSLKSVSFSPDGKVLASKSSD 463

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/196 (15%), Positives = 71/196 (36%), Gaps = 19/196 (9%)

Query: 102 LVGAGDNSQYPPTKVIIWD----DHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYV 156
             G+GD        + +WD    +      G      DV +       +     +  I +
Sbjct: 25  ATGSGDG------TIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRL 77

Query: 157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAH 215
           +     + +  +    +   +  ++      +L+        +++        +  +  H
Sbjct: 78  WDLETGECVRTLTGHTS--YVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKCLTTLRGH 134

Query: 216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW 275
              +     + DG  +A++S  GT I++++   G +      G    E+ S+A SP+ + 
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDGT-IKLWDLRTG-KCVATLTGHTG-EVNSVAFSPDGEK 191

Query: 276 LAVASDKGTVHIFSLR 291
           L  +S  GT+ ++ L 
Sbjct: 192 LLSSSSDGTIKLWDLS 207

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	411
KOG2111	346	consensus Uncharacterized conserved protein, conta	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG2110	391	consensus Uncharacterized conserved protein, conta	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.98
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.98
KOG0286	343	consensus G-protein beta subunit [General function	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
PTZ00421	493	coronin; Provisional	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
PTZ00421	493	coronin; Provisional	99.93
PTZ00420	568	coronin; Provisional	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
PTZ00420	568	coronin; Provisional	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0289	506	consensus mRNA splicing factor [General function p	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.87
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.86
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG1539	910	consensus WD repeat protein [General function pred	99.86
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.85
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG2096	420	consensus WD40 repeat protein [General function pr	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.84
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.83
KOG1274	933	consensus WD40 repeat protein [General function pr	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.81
KOG1539	910	consensus WD repeat protein [General function pred	99.81
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.79
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.78
KOG1273	405	consensus WD40 repeat protein [General function pr	99.78
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.77
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.77
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.75
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.71
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.7
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.69
KOG1188	376	consensus WD40 repeat protein [General function pr	99.68
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
KOG1963	792	consensus WD40 repeat protein [General function pr	99.68
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.68
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.68
KOG2321	703	consensus WD40 repeat protein [General function pr	99.67
KOG1963	792	consensus WD40 repeat protein [General function pr	99.67
KOG4328	498	consensus WD40 protein [Function unknown]	99.67
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.65
COG2319	466	FOG: WD40 repeat [General function prediction only	99.64
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.64
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.64
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.63
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.62
KOG1188	376	consensus WD40 repeat protein [General function pr	99.62
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.62
KOG0649	325	consensus WD40 repeat protein [General function pr	99.61
KOG1334	559	consensus WD40 repeat protein [General function pr	99.61
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.61
PRK01742	429	tolB translocation protein TolB; Provisional	99.6
KOG0649	325	consensus WD40 repeat protein [General function pr	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.58
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.57
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.57
PRK04922	433	tolB translocation protein TolB; Provisional	99.57
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.55
PRK02889	427	tolB translocation protein TolB; Provisional	99.54
KOG2315	566	consensus Predicted translation initiation factor	99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.53
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.52
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.52
PRK03629	429	tolB translocation protein TolB; Provisional	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.5
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.48
KOG1310	758	consensus WD40 repeat protein [General function pr	99.48
PRK02889	427	tolB translocation protein TolB; Provisional	99.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.46
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.46
KOG2139	445	consensus WD40 repeat protein [General function pr	99.43
KOG4227	609	consensus WD40 repeat protein [General function pr	99.43
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.43
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.42
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.41
KOG1310	758	consensus WD40 repeat protein [General function pr	99.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.38
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.36
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.35
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.35
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.35
PRK01029	428	tolB translocation protein TolB; Provisional	99.33
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.33
KOG2315	566	consensus Predicted translation initiation factor	99.33
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.32
KOG2139	445	consensus WD40 repeat protein [General function pr	99.31
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.31
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.31
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.3
PRK00178	430	tolB translocation protein TolB; Provisional	99.3
PRK04792	448	tolB translocation protein TolB; Provisional	99.3
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.27
KOG2314	698	consensus Translation initiation factor 3, subunit	99.26
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.26
KOG4547	541	consensus WD40 repeat-containing protein [General	99.26
PRK04792	448	tolB translocation protein TolB; Provisional	99.25
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.24
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.23
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.21
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.2
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.2
PRK01029	428	tolB translocation protein TolB; Provisional	99.19
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.18
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.16
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.13
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.13
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.12
KOG2321	703	consensus WD40 repeat protein [General function pr	99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.09
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.08
KOG1334	559	consensus WD40 repeat protein [General function pr	99.08
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.03
COG4946	668	Uncharacterized protein related to the periplasmic	99.03
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.02
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.01
KOG2314	698	consensus Translation initiation factor 3, subunit	99.0
PRK04043	419	tolB translocation protein TolB; Provisional	99.0
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.98
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.98
COG4946	668	Uncharacterized protein related to the periplasmic	98.96
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.94
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.93
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.91
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.91
PRK04043	419	tolB translocation protein TolB; Provisional	98.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.89
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.87
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.83
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.81
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.81
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.8
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.8
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.76
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.75
KOG4547	541	consensus WD40 repeat-containing protein [General	98.73
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.71
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.69
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.69
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.68
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.64
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.63
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.61
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.6
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.57
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.57
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.56
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.55
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.52
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.5
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.49
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.47
KOG2695	425	consensus WD40 repeat protein [General function pr	98.43
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.39
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.37
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.34
KOG2695	425	consensus WD40 repeat protein [General function pr	98.32
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.32
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.28
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.26
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.23
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.23
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.22
PRK02888	635	nitrous-oxide reductase; Validated	98.22
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.19
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.18
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.18
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.17
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.17
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.16
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.16
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.15
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.13
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.11
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.06
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.03
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.97
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.94
COG3391	381	Uncharacterized conserved protein [Function unknow	97.91
PRK02888	635	nitrous-oxide reductase; Validated	97.88
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.84
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.84
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.83
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.82
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.79
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.76
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.75
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.71
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.64
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.64
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.64
KOG3621	726	consensus WD40 repeat-containing protein [General	97.62
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.62
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.61
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.59
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.55
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.54
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.5
KOG3621	726	consensus WD40 repeat-containing protein [General	97.48
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.46
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.44
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.44
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.42
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.42
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.41
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.4
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.37
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.36
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.35
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.32
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.31
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.31
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.3
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.3
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.29
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.28
PRK13616	591	lipoprotein LpqB; Provisional	97.24
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.15
COG3391	381	Uncharacterized conserved protein [Function unknow	97.15
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.03
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.87
KOG2395	644	consensus Protein involved in vacuole import and d	96.77
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.75
KOG2395	644	consensus Protein involved in vacuole import and d	96.75
PRK13616	591	lipoprotein LpqB; Provisional	96.74
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.61
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.54
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.54
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.45
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.33
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.19
KOG2444	238	consensus WD40 repeat protein [General function pr	96.1
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.1
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.1
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.03
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.99
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.85
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.4
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.25
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.15
PRK10115	686	protease 2; Provisional	94.97
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.96
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.83
COG5167	776	VID27 Protein involved in vacuole import and degra	94.83
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.77
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.64
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.43
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.39
PHA02713	557	hypothetical protein; Provisional	94.29
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.26
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.18
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.1
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.05
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.9
PRK10115	686	protease 2; Provisional	93.82
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.79
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.66
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.62
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.57
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.54
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.52
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.5
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.35
PRK13684	334	Ycf48-like protein; Provisional	92.91
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.87
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.78
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.61
KOG2444	238	consensus WD40 repeat protein [General function pr	92.43
COG5167	776	VID27 Protein involved in vacuole import and degra	92.42
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.28
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.24
COG4880	603	Secreted protein containing C-terminal beta-propel	91.64
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	91.54
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.27
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.65
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.03
PHA02713	557	hypothetical protein; Provisional	90.02
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.77
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.67
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.19
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.09
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	89.07
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.98
COG3292	671	Predicted periplasmic ligand-binding sensor domain	88.94
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.99
KOG0783	1267	consensus Uncharacterized conserved protein, conta	87.93
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	87.77
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.16
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.87
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.8
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.72
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	86.02
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	85.97
COG3292	671	Predicted periplasmic ligand-binding sensor domain	85.97
KOG2247	615	consensus WD40 repeat-containing protein [General	85.96
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.57
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.11
PRK13684	334	Ycf48-like protein; Provisional	85.0
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	84.88
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	84.34
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	83.98
KOG3616	1636	consensus Selective LIM binding factor [Transcript	83.79
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.59
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.33
COG1520	370	FOG: WD40-like repeat [Function unknown]	82.8
KOG2247	615	consensus WD40 repeat-containing protein [General	82.54
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	82.16
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	82.07
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	81.59
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	80.22
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	80.19

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=4.4e-44  Score=300.17  Aligned_cols=332  Identities=61%  Similarity=0.996  Sum_probs=301.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      ...+++|+.|...+++|.|..++||++++.++.....+..+...++.|.|..+...|++|+..|.|+.+.|.|||-...+
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            35569999999999999999999999999888777766677788999999999999999999999999999999988899


Q ss_pred             EEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcC-CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc
Q 015198          126 CIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF  204 (411)
Q Consensus       126 ~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~  204 (411)
                      ++.++.+..+|.++.+.++...++..+.|++|... +.+.++.+....+|-..+++.+..+..+||+.|..-|.|+|-+.
T Consensus        87 ~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL  166 (346)
T KOG2111|consen   87 CIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL  166 (346)
T ss_pred             EEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence            99999999999999999999999999999999997 67899999988888899999999999999999999999999555


Q ss_pred             CCcc---eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeC
Q 015198          205 GLNM---IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD  281 (411)
Q Consensus       205 ~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  281 (411)
                      ....   ...+.+|...|.|++++-+|.++|++|..|+.|||||..+|+++++++.+...+.|.+|+|||++.+||++++
T Consensus       167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSd  246 (346)
T KOG2111|consen  167 ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSD  246 (346)
T ss_pred             hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcC
Confidence            4433   4788999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             CCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCc
Q 015198          282 KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVT  361 (411)
Q Consensus       282 dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (411)
                      .|+|+||.++.....++                                ..+++++....+|+|++++|++++|++|.+.
T Consensus       247 KgTlHiF~l~~~~~~~~--------------------------------~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~  294 (346)
T KOG2111|consen  247 KGTLHIFSLRDTENTED--------------------------------ESSSLSFKRLVLPKYFSSEWSFAKFQLPQGT  294 (346)
T ss_pred             CCeEEEEEeecCCCCcc--------------------------------ccccccccccccchhcccceeEEEEEccCCC
Confidence            99999999988664431                                1144555556899999999999999999999


Q ss_pred             eEEEEEccC-CEEEEEEeCCcEEEEEEecCCCCcEEEeeeeeccccCCC
Q 015198          362 HFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSR  409 (411)
Q Consensus       362 ~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (411)
                      +++|+|..+ +.+++.|.||.+|.+.++++++|+|.+..|..|++..+.
T Consensus       295 ~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~~g~~~~~~~~~~~~~~~~  343 (346)
T KOG2111|consen  295 QCIIAFGSETNTVIAICADGSYYKFKFDPKNGGESSRHEYSYFLSLQDD  343 (346)
T ss_pred             cEEEEecCCCCeEEEEEeCCcEEEEEeccccccchhhhhhhheeecccC
Confidence            999999999 999999999999999999999999999999988877654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-42  Score=296.89  Aligned_cols=278  Identities=13%  Similarity=0.209  Sum_probs=238.2

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      .+.||.++|.|++|+|+|+.|++|+ |.++|+||+++.......  ++|...+.++.|+||+..+++|+.|     |.|+
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~--KgH~~WVlcvawsPDgk~iASG~~d-----g~I~  182 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC--KGHKNWVLCVAWSPDGKKIASGSKD-----GSIR  182 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee--cCCccEEEEEEECCCcchhhccccC-----CeEE
Confidence            4789999999999999999999999 999999999986555544  4999999999999999999999998     9999


Q ss_pred             EEECCCCcEEEE-Ee-ecCceeEEEEcC-----CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          118 IWDDHQSRCIGE-FA-FRSDVRSVKLSR-----DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       118 vwd~~~~~~~~~-~~-~~~~i~~~~~~~-----~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      +||.++|+++.. +. |...|++++|.|     ..+.++   .||.|+|||+..++++..+.+|..+++  |+.+-+++ 
T Consensus       183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT--CvrwGG~g-  259 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT--CVRWGGEG-  259 (480)
T ss_pred             EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE--EEEEcCCc-
Confidence            999999987644 55 999999999975     455666   799999999999999999999998554  45555444 


Q ss_pred             EEEEecCCCCeEEEEEcCC-------------------------------------------------------------
Q 015198          188 VLACPGLQRGQVRIEHFGL-------------------------------------------------------------  206 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~-------------------------------------------------------------  206 (411)
                       ++++|+.|++|++|....                                                             
T Consensus       260 -liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er  338 (480)
T KOG0271|consen  260 -LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER  338 (480)
T ss_pred             -eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence             456788888888876532                                                             


Q ss_pred             -------------------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198          207 -------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (411)
Q Consensus       207 -------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (411)
                                         +++..+.+|..-|+.+.|+||++++|+++-|.. |++||.++|+.+.+|++  |-+.|+.+
T Consensus       339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRG--Hv~~VYqv  415 (480)
T KOG0271|consen  339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRG--HVAAVYQV  415 (480)
T ss_pred             eEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhh--ccceeEEE
Confidence                               223345678899999999999999999999999 99999999999999999  88999999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccc
Q 015198          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (411)
                      +|+.|.++|++|+.|.+++||++++.+-..++..|++                                           
T Consensus       416 awsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D-------------------------------------------  452 (480)
T KOG0271|consen  416 AWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD-------------------------------------------  452 (480)
T ss_pred             EeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCc-------------------------------------------
Confidence            9999999999999999999999999998777776633                                           


Q ss_pred             cccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198          348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (411)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~  386 (411)
                                   .++.+-|+|+ ++++.++.|-.+++|.
T Consensus       453 -------------EVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  453 -------------EVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             -------------eEEEEEecCCCceeecCCCceEEEeec
Confidence                         6778899999 5566666688887774

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=1.5e-38  Score=271.88  Aligned_cols=339  Identities=33%  Similarity=0.559  Sum_probs=289.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      ....+..+.|+.+...|.+|+....++|+.++..+.....  .....|+.+.|+....++++..+-     +.+++.+++
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~--~~~~~IvEmLFSSSLvaiV~~~qp-----r~Lkv~~~K   76 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD--TEGVSIVEMLFSSSLVAIVSIKQP-----RKLKVVHFK   76 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhccc--CCCeEEEEeecccceeEEEecCCC-----ceEEEEEcc
Confidence            3456788889999999999996667999999877755443  678899999999999999998554     899999999


Q ss_pred             CCcEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEecc-CCCcceEEEccCCCceEEEEecCC-CCeEE
Q 015198          123 QSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETL-ANLRGLCCLSHHSSTSVLACPGLQ-RGQVR  200 (411)
Q Consensus       123 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~-dg~i~  200 (411)
                      .+..++.+.+...|.++.++.+...++....|+|||+++.++++++..- .++...++++++..+.++|+.++. .|.|.
T Consensus        77 k~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   77 KKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             cCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            9999999999999999999999999998888999999999999999765 677789999999999999997754 58899


Q ss_pred             EEE-cCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE
Q 015198          201 IEH-FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (411)
Q Consensus       201 i~~-~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (411)
                      ||+ .+.+.+..+..|++++.+++|+++|.+||++++.|+.||||.+.+|+.+++|+.+.....|.+++|+||+++|++.
T Consensus       157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence            965 5568889999999999999999999999999999999999999999999999998777899999999999999999


Q ss_pred             eCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCC
Q 015198          280 SDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPE  359 (411)
Q Consensus       280 s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (411)
                      ++.++|+||++++....           +++++..+.+-        .+.-.....+++|.++.++++.+|.|++.++|.
T Consensus       237 S~TeTVHiFKL~~~~~~-----------~~~~p~~~~~~--------~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~  297 (391)
T KOG2110|consen  237 SNTETVHIFKLEKVSNN-----------PPESPTAGTSW--------FGKVSKAATSYLPSQVSSVLDQSRKFATAKLPE  297 (391)
T ss_pred             cCCCeEEEEEecccccC-----------CCCCCCCCCcc--------cchhhhhhhhhcchhhhhhhhhccceeEEEccC
Confidence            99999999999987622           22222222222        222222333488888889999999999999998


Q ss_pred             Cc-eEEEEEccC---CEEEEEEeCCcEEEEEEecCCCCcEEEeeeeeccccC
Q 015198          360 VT-HFIAAFGSQ---NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTV  407 (411)
Q Consensus       360 ~~-~~~~~~~~~---~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (411)
                      .. ...|.+.+.   .++.+++.||.+|.|.+++++||||.+++.+.|....
T Consensus       298 s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~  349 (391)
T KOG2110|consen  298 SGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSI  349 (391)
T ss_pred             CCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCcc
Confidence            55 477888752   9999999999999999999999999999988887643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.4e-37  Score=269.77  Aligned_cols=284  Identities=16%  Similarity=0.151  Sum_probs=246.6

Q ss_pred             CCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC--eEEEEecCCCCC
Q 015198           34 HPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQ  110 (411)
Q Consensus        34 ~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~  110 (411)
                      +.+.....+-+.+|..+.|+.|++.|++|+ +|.++||+......+  ..|.+|...+.++.|+|.  ...+++++.|  
T Consensus       165 ~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--~~l~gH~~~v~~~~fhP~~~~~~lat~s~D--  240 (459)
T KOG0272|consen  165 LELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--QTLRGHTSRVGAAVFHPVDSDLNLATASAD--  240 (459)
T ss_pred             hhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee--EEEeccccceeeEEEccCCCccceeeeccC--
Confidence            334455667889999999999999999999 999999999876433  345699999999999996  6789999998  


Q ss_pred             CCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          111 YPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       111 ~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                         |++++|++.+...+..+. |...|..++|+|+|++++   .|.+-++||+++++.+...++|...+..++|.  ++|
T Consensus       241 ---gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~--~DG  315 (459)
T KOG0272|consen  241 ---GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ--PDG  315 (459)
T ss_pred             ---CceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec--CCC
Confidence               999999999989999988 899999999999999999   79999999999999888889998865555554  455


Q ss_pred             eEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          187 SVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                      .++ ++|+.|..-+||+.+ ++++..+.+|..+|..++|+|+|..||+|+.|++ ++|||++..+.+.++.+  |..-|+
T Consensus       316 SL~-~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipA--H~nlVS  391 (459)
T KOG0272|consen  316 SLA-ATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPA--HSNLVS  391 (459)
T ss_pred             cee-eccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceeccc--ccchhh
Confidence            554 568899999998754 6889999999999999999999999999999999 99999999999999988  889999


Q ss_pred             EEEeCC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCc
Q 015198          266 SIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK  344 (411)
Q Consensus       266 ~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (411)
                      .+.|+| .|.+|++++.|++++||.-.+..+.+.+.+|                                          
T Consensus       392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH------------------------------------------  429 (459)
T KOG0272|consen  392 QVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH------------------------------------------  429 (459)
T ss_pred             heEecccCCeEEEEcccCcceeeecCCCcccchhhcCC------------------------------------------
Confidence            999998 7889999999999999999999988755555                                          


Q ss_pred             ccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198          345 YFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (411)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~  386 (411)
                                    ++-+..|..+++ .-|++++.|-.+..|.
T Consensus       430 --------------e~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  430 --------------EGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             --------------ccceEEEEeccCCceEEEeccCceeeecc
Confidence                          234566788888 5577777799999884

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-35  Score=241.07  Aligned_cols=294  Identities=14%  Similarity=0.184  Sum_probs=238.4

Q ss_pred             CccccCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcceE---EeecCCCCEEEEEEeccCCeEEEEecCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETF---RRDLKSGGFRIVEMLFRCNILALVGAGDNSQ  110 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  110 (411)
                      +...+.+|.+.|+.++..+.+ +.|++++ |..+.+|++......+   .+.+.+|...+..+..++++.+.++++.|  
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD--   84 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD--   84 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc--
Confidence            345688999999999999884 5666777 9999999997543333   45567889999999999999999999998  


Q ss_pred             CCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEecc--CCCcceEEEccCC
Q 015198          111 YPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL--ANLRGLCCLSHHS  184 (411)
Q Consensus       111 ~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~  184 (411)
                         +.+++||+.+++..+.|. |...|.+++|++|.+.++   .|.+|++|++... +..++...  .+-+.+++|+|+.
T Consensus        85 ---~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   85 ---GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             ---ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCC
Confidence               999999999999988887 999999999999999888   7999999998654 44444333  4555666666666


Q ss_pred             CceEEEEecCCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc
Q 015198          185 STSVLACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE  263 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~  263 (411)
                      ...+|+. ++.|++|++|+.+.. ....+.+|.+.++.++++|||.++++|+.||. +.+||++.++.++.+.   +...
T Consensus       161 ~~p~Ivs-~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~---a~~~  235 (315)
T KOG0279|consen  161 SNPIIVS-ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLE---AFDI  235 (315)
T ss_pred             CCcEEEE-ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEecc---CCCe
Confidence            5677765 679999999998874 45667899999999999999999999999999 9999999999988887   6779


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccC
Q 015198          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP  343 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (411)
                      |.+++|+|+..+|+.+...+ |+|||+.++.+.+++..+..                         ++            
T Consensus       236 v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~-------------------------g~------------  277 (315)
T KOG0279|consen  236 VNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGI-------------------------GP------------  277 (315)
T ss_pred             EeeEEecCCceeEeeccCCc-eEEEeccchhhhhhcccccc-------------------------cc------------
Confidence            99999999988887776655 99999999998875554411                         00            


Q ss_pred             cccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198          344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~  388 (411)
                                .-+.....-..++|+++ ..|+++-.|+.+.+|++.
T Consensus       278 ----------s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  278 ----------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ----------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence                      01111122345899999 778888889999999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.6e-34  Score=237.82  Aligned_cols=288  Identities=11%  Similarity=0.061  Sum_probs=245.2

Q ss_pred             CCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198           33 GHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        33 ~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      .+.....+.+|.+.|+++.|++|.++|++++ ||.+.|||.-+..+.....  -....+...+|+|++.+++.|+-|   
T Consensus        44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip--l~s~WVMtCA~sPSg~~VAcGGLd---  118 (343)
T KOG0286|consen   44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP--LPSSWVMTCAYSPSGNFVACGGLD---  118 (343)
T ss_pred             eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe--cCceeEEEEEECCCCCeEEecCcC---
Confidence            3444467899999999999999999999999 9999999998866665555  467889999999999999999998   


Q ss_pred             CCCeEEEEECCCC------cEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc
Q 015198          112 PPTKVIIWDDHQS------RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH  182 (411)
Q Consensus       112 ~d~~i~vwd~~~~------~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (411)
                        +...||++.+.      ...+++. |.+-+.+..|-+|+.++.  .|.+.-+||+++++.+..+.+|...+..+.++|
T Consensus       119 --N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  119 --NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP  196 (343)
T ss_pred             --ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence              99999998754      2334454 899999999999998888  799999999999999999999998766666666


Q ss_pred             CCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC
Q 015198          183 HSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR  261 (411)
Q Consensus       183 ~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~  261 (411)
                      + +++.++ +|+-|+..+||+.+ +.+++.|.+|+..|+++.|.|+|.-+++|++|+. .|+||++..+.+..+......
T Consensus       197 ~-~~ntFv-Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~  273 (343)
T KOG0286|consen  197 S-DGNTFV-SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSII  273 (343)
T ss_pred             C-CCCeEE-ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCccc
Confidence            4 455655 47789999998865 5789999999999999999999999999999999 999999999999888865556


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccc
Q 015198          262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGV  341 (411)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (411)
                      .+|++++||..|++|.+|..|.++.|||.-.++....+..|                                       
T Consensus       274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH---------------------------------------  314 (343)
T KOG0286|consen  274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH---------------------------------------  314 (343)
T ss_pred             CCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc---------------------------------------
Confidence            79999999999999999999999999999888765433333                                       


Q ss_pred             cCcccccccceEEEEeCCCceEEEEEccCCEEEEEEe-CCcEEEEE
Q 015198          342 LPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSM-DGSFYRCS  386 (411)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~~~  386 (411)
                                       +..+.++..+|++..++.++ |..++||.
T Consensus       315 -----------------eNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  315 -----------------ENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             -----------------CCeeEEEEECCCCcEEEecchhHheeecC
Confidence                             34567788899977666666 99999984

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-36  Score=262.79  Aligned_cols=242  Identities=15%  Similarity=0.160  Sum_probs=218.5

Q ss_pred             CCccccCCCCCCeEEEEEcCC--CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198           35 PQTAFSDVDEIELISVSWNQD--YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        35 ~~~~~~~~h~~~V~~l~~s~~--g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      +....+.+|.+.|.++.|+|.  +..||+|+ ||++++|++++...+  ..+.+|...+..+.|+|+|.+|++++.|   
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l--~~l~gH~~RVs~VafHPsG~~L~TasfD---  282 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL--QDLEGHLARVSRVAFHPSGKFLGTASFD---  282 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--hhhhcchhhheeeeecCCCceeeecccc---
Confidence            566778999999999999997  66899999 999999999864433  3355899999999999999999999998   


Q ss_pred             CCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                        .+-++||+.++..+.... |...|.+++|.+||.+++   .|..-+|||+++|+++..+.+|..  .+..++|+|+|.
T Consensus       283 --~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k--~I~~V~fsPNGy  358 (459)
T KOG0272|consen  283 --STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK--EILSVAFSPNGY  358 (459)
T ss_pred             --cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc--ceeeEeECCCce
Confidence              999999999998777666 999999999999999999   789999999999999999999888  556666677777


Q ss_pred             EEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          188 VLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                      .||+ |+.|++++||+.+. ..+..+.+|..-|+.+.|+| .|.+|++++.|++ ++||...++.+++.+.+  |.+.|.
T Consensus       359 ~lAT-gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He~kV~  434 (459)
T KOG0272|consen  359 HLAT-GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HEGKVI  434 (459)
T ss_pred             EEee-cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--CccceE
Confidence            7775 88999999999876 56788899999999999998 7889999999999 99999999999999999  899999


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          266 SIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      ++.+++|++++++++.|++|++|.
T Consensus       435 s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  435 SLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEEeccCCceEEEeccCceeeecc
Confidence            999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-35  Score=251.97  Aligned_cols=242  Identities=16%  Similarity=0.253  Sum_probs=210.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-----CeEEEEecCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-----NILALVGAGDNSQY  111 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~s~~~d~~~  111 (411)
                      ....+|...|.|++|+|||+.||+|+ ||.|++||.++++++ -..|.+|...|.+++|.|     ....+++++.|   
T Consensus       151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~-g~~l~gH~K~It~Lawep~hl~p~~r~las~skD---  226 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI-GRALRGHKKWITALAWEPLHLVPPCRRLASSSKD---  226 (480)
T ss_pred             eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc-cccccCcccceeEEeecccccCCCccceecccCC---
Confidence            34689999999999999999999999 999999999886654 445779999999999875     56789999988   


Q ss_pred             CCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCc-------------
Q 015198          112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLR-------------  175 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~-------------  175 (411)
                        |.++|||+..++++..+. |..+|+|++|-.++.+..  .|++|++|+...|++.+.+++|.+.+             
T Consensus       227 --g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt  304 (480)
T KOG0271|consen  227 --GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT  304 (480)
T ss_pred             --CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence              999999999999999988 999999999998887776  89999999987776665555443322             


Q ss_pred             ----------------------------------------------------------------ceEEEccCCCceEEEE
Q 015198          176 ----------------------------------------------------------------GLCCLSHHSSTSVLAC  191 (411)
Q Consensus       176 ----------------------------------------------------------------~~~~~~~~~~~~~l~~  191 (411)
                                                                                      -+..+.++|++.++|+
T Consensus       305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS  384 (480)
T KOG0271|consen  305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS  384 (480)
T ss_pred             cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence                                                                            1233456677888875


Q ss_pred             ecCCCCeEEEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198          192 PGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       192 ~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (411)
                       ++-|..|++|+- +++.+..|.+|-++|+.++|+.|.++|++|+.|.+ +++||+++.++...+.+  |...|.++.|+
T Consensus       385 -aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT-LKvw~V~tkKl~~DLpG--h~DEVf~vDws  460 (480)
T KOG0271|consen  385 -ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST-LKVWDVRTKKLKQDLPG--HADEVFAVDWS  460 (480)
T ss_pred             -eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCce-EEEEEeeeeeecccCCC--CCceEEEEEec
Confidence             678999999874 56888999999999999999999999999999999 99999999999999998  88899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEE
Q 015198          271 PNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       271 pdg~~l~s~s~dg~I~vwd  289 (411)
                      |||+.+++|+.|..+++|.
T Consensus       461 pDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  461 PDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCCceeecCCCceEEEeec
Confidence            9999999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.8e-34  Score=232.58  Aligned_cols=253  Identities=18%  Similarity=0.219  Sum_probs=217.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      -.++.|+.+.+.||++.||+++...||+||+.+....-...+..+...+..+.|..++..+.+|++|     |+++|||+
T Consensus        38 h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-----gt~kIWdl  112 (311)
T KOG0315|consen   38 HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-----GTVKIWDL  112 (311)
T ss_pred             cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-----ceEEEEec
Confidence            3467899999999999999999999999999987665556666888999999999999999999999     99999999


Q ss_pred             CCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe
Q 015198          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (411)
Q Consensus       122 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (411)
                      +.-.+-+.+++..+|+++..+|+..-++   .+|.|++||+....+.+.+-... ...+..+...+++.+++. +...|.
T Consensus       113 R~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~-~~~i~sl~v~~dgsml~a-~nnkG~  190 (311)
T KOG0315|consen  113 RSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED-DTSIQSLTVMPDGSMLAA-ANNKGN  190 (311)
T ss_pred             cCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC-CcceeeEEEcCCCcEEEE-ecCCcc
Confidence            9988888899999999999999765555   68999999998876666664332 245666777777788876 568899


Q ss_pred             EEEEEcCC-------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-ceEEEEeCCCCCcceEEEEeC
Q 015198          199 VRIEHFGL-------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       199 i~i~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~s  270 (411)
                      .++|+...       .++..++.|++.+..+.+|||+++||+++.|.+ ++||++++. +....+.+  |...++..+||
T Consensus       191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~g--h~rWvWdc~FS  267 (311)
T KOG0315|consen  191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLTG--HQRWVWDCAFS  267 (311)
T ss_pred             EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEeec--CCceEEeeeec
Confidence            99998754       456778999999999999999999999999999 999999887 55556666  78899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCC
Q 015198          271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLS  304 (411)
Q Consensus       271 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~  304 (411)
                      .||+||++|+.|+.+++|++..+++......|.+
T Consensus       268 ~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K  301 (311)
T KOG0315|consen  268 ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK  301 (311)
T ss_pred             cCccEEEecCCCCceeecccccCceeeecCCccc
Confidence            9999999999999999999999998887777744

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.8e-34  Score=242.68  Aligned_cols=257  Identities=13%  Similarity=0.188  Sum_probs=226.7

Q ss_pred             CCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198           33 GHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        33 ~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      .+++.....+|..+|+.+-|+|+-..+++++ |++|++||..+++.  ...+++|...+..+.|+..+.++++++.|   
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsD---  171 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSD---  171 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCc---
Confidence            3355567888999999999999999999998 99999999998664  45567898899999999999999999998   


Q ss_pred             CCCeEEEEECCC-CcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          112 PPTKVIIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       112 ~d~~i~vwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                        -.+++||..+ .++++.+. |...|.++.|-|.|.+++   .|.+|+.|++.++-++.++.+|..  .+..+.++.||
T Consensus       172 --l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DG  247 (406)
T KOG0295|consen  172 --LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDG  247 (406)
T ss_pred             --cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCe
Confidence              7799999877 45565554 899999999999998888   799999999999999999999987  77778888888


Q ss_pred             eEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCC---------------CCEEEEEcCCCeEEEEEECCCCc
Q 015198          187 SVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLD---------------GLLLATASTRGTLIRIFNTVDGT  250 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~---------------g~~l~s~s~dg~~I~vwd~~~~~  250 (411)
                      .++|+ ++.|.+|++|.... .+...+..|+.+|.+++|.|.               ++++.+++.|+. |++||+.++.
T Consensus       248 ti~As-~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~  325 (406)
T KOG0295|consen  248 TIIAS-CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGM  325 (406)
T ss_pred             eEEEe-cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCe
Confidence            88775 77999999998765 467788999999999999773               369999999999 9999999999


Q ss_pred             eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198          251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (411)
Q Consensus       251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~  302 (411)
                      ++.++.+  |...|..++|+|.|+||+++.+|+++++||++++++...+..|
T Consensus       326 cL~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah  375 (406)
T KOG0295|consen  326 CLFTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH  375 (406)
T ss_pred             EEEEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence            9999999  8899999999999999999999999999999999988654444

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.5e-32  Score=241.62  Aligned_cols=276  Identities=20%  Similarity=0.296  Sum_probs=236.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      .....|++|+|+.+|.+||+|. ||.++||+... ...  ..+..|...|.++.|+..+.++++++-|     +++.+||
T Consensus       233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~--~tl~~HkgPI~slKWnk~G~yilS~~vD-----~ttilwd  304 (524)
T KOG0273|consen  233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLI--STLGQHKGPIFSLKWNKKGTYILSGGVD-----GTTILWD  304 (524)
T ss_pred             CccCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhh--hhhhccCCceEEEEEcCCCCEEEeccCC-----ccEEEEe
Confidence            3456899999999999999999 99999999875 322  3356889999999999999999999998     9999999


Q ss_pred             CCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198          121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       121 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (411)
                      ..+++..+.+. |..+-..+.|-.+..++.  .|+.|+++.+....++.++.+|.+  .+.++.+++.+.+|++ ++.|+
T Consensus       305 ~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g--~V~alk~n~tg~LLaS-~SdD~  381 (524)
T KOG0273|consen  305 AHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG--EVNALKWNPTGSLLAS-CSDDG  381 (524)
T ss_pred             ccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC--ceEEEEECCCCceEEE-ecCCC
Confidence            99999999998 566668899988888887  799999999998899999999888  5566777777778875 67999


Q ss_pred             eEEEEEc-CCcceEEEeccccceeEEEecCCC---------CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198          198 QVRIEHF-GLNMIKLINAHDSHIACFTLTLDG---------LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (411)
Q Consensus       198 ~i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g---------~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (411)
                      +++||.. +......+.+|...|+.+.|+|.|         ..|++++.|+. |++||+..+.+++.|..  |..+|+++
T Consensus       382 TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVysv  458 (524)
T KOG0273|consen  382 TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYSV  458 (524)
T ss_pred             eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEEE
Confidence            9999994 557788899999999999999965         47899999999 99999999999999988  88999999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccc
Q 015198          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (411)
                      +|+|+|++||+|+.||.|.+|++++++.-+..                                                
T Consensus       459 afS~~g~ylAsGs~dg~V~iws~~~~~l~~s~------------------------------------------------  490 (524)
T KOG0273|consen  459 AFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY------------------------------------------------  490 (524)
T ss_pred             EecCCCcEEEecCCCCeeEeccccchheeEee------------------------------------------------
Confidence            99999999999999999999999999844211                                                


Q ss_pred             cccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198          348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~  388 (411)
                               ...+.+..++|+.+ +.|.++-+||.+.+..|.
T Consensus       491 ---------~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  491 ---------QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ---------cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence                     11245677889988 677777779988887653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.8e-32  Score=225.51  Aligned_cols=285  Identities=16%  Similarity=0.222  Sum_probs=235.3

Q ss_pred             CCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           34 HPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        34 ~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      +.....+.+|++.|+.+.|+|+|.+||+|+ |..|.+|+.....+.+-. +++|...|..+.|..++..+++++.|    
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~-lkgHsgAVM~l~~~~d~s~i~S~gtD----  111 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV-LKGHSGAVMELHGMRDGSHILSCGTD----  111 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceee-eccccceeEeeeeccCCCEEEEecCC----
Confidence            334456889999999999999999999999 999999997653433332 45899999999999999999999998    


Q ss_pred             CCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          113 PTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                       .+|+.||.++|++++.++ |..-|+++.-+.-|..++    .|+++++||+++...++.+...   ....++.+...+.
T Consensus       112 -k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k---yqltAv~f~d~s~  187 (338)
T KOG0265|consen  112 -KTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK---YQLTAVGFKDTSD  187 (338)
T ss_pred             -ceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc---eeEEEEEeccccc
Confidence             999999999999999998 888888888666666665    7999999999988888777433   3566677766666


Q ss_pred             EEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC----CceEEEEeCCCCCc
Q 015198          188 VLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD----GTRLQEVRRGVDRA  262 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----~~~~~~~~~~~~~~  262 (411)
                      .+++ |.-|+.|++|+.. ......+.+|..+|+.+..+++|.++.+-+.|.. +++||++-    ..++..+.++.|.-
T Consensus       188 qv~s-ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnf  265 (338)
T KOG0265|consen  188 QVIS-GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNF  265 (338)
T ss_pred             ceee-ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhh
Confidence            6665 6699999999875 4667888999999999999999999999999999 99999874    34577787765543


Q ss_pred             --ceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccccccc
Q 015198          263 --EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRG  340 (411)
Q Consensus       263 --~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (411)
                        ....++|+|+++.+.+|+.|..+++||.......                                            
T Consensus       266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l--------------------------------------------  301 (338)
T KOG0265|consen  266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL--------------------------------------------  301 (338)
T ss_pred             hhhcceeeccCCCCccccccccceEEEeecccccEE--------------------------------------------
Confidence              4457799999999999999999999998876643                                            


Q ss_pred             ccCcccccccceEEEEeCC--CceEEEEEccC-CEEEEEEeCCcEEEEEE
Q 015198          341 VLPKYFSSEWSFAQFHIPE--VTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (411)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~dg~~~~~~~  387 (411)
                                    .++|.  +.+..+.|+|. .-|+.+++|-.+|.-++
T Consensus       302 --------------yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  302 --------------YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             --------------EEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence                          33333  67888999998 77888888999887654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-31  Score=248.41  Aligned_cols=301  Identities=14%  Similarity=0.260  Sum_probs=239.8

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      ..+.-...+|..++|+..|.+||.|+  -|.+.||++....-++++  ++|-..+.++.++||+.++++|++|     |.
T Consensus       301 h~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ--QgH~~~i~~l~YSpDgq~iaTG~eD-----gK  373 (893)
T KOG0291|consen  301 HSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ--QGHSDRITSLAYSPDGQLIATGAED-----GK  373 (893)
T ss_pred             EEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec--cccccceeeEEECCCCcEEEeccCC-----Cc
Confidence            33455567899999999999999999  579999999875545544  4889999999999999999999998     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      |+|||..++-|+.++. |...|+.+.|+..++.++   .||+|+.||+...+..+++..+ .++...+++.++.|.++++
T Consensus       374 VKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGelV~A  452 (893)
T KOG0291|consen  374 VKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGELVCA  452 (893)
T ss_pred             EEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCEEEe
Confidence            9999999999999998 999999999999998888   7999999999999988888764 4577888888888877765


Q ss_pred             ecCCC-CeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-ceEEEEeCCCCCcceEEEE
Q 015198          192 PGLQR-GQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       192 ~g~~d-g~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~  268 (411)
                       |+.| -.|.+|... ++.+..+.+|+++|.+++|+|+|..|++++.|.+ ||+||+-.. ..+.++.   +...+..++
T Consensus       453 -G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vs  527 (893)
T KOG0291|consen  453 -GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVS  527 (893)
T ss_pred             -eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEE
Confidence             5454 457778865 5777888999999999999999999999999999 999998654 2344555   556799999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccc
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS  348 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (411)
                      |+|||+.||+++.||.|.+||++.+.....+....+                      ..+.+         ...+.+  
T Consensus       528 frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD----------------------~~~gR---------~~~D~~--  574 (893)
T KOG0291|consen  528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKD----------------------LSGGR---------KETDRI--  574 (893)
T ss_pred             EcCCCCeEEEEEecceEEEEEhhhceeeccccchhh----------------------ccccc---------ccccee--
Confidence            999999999999999999999999876643333311                      00000         000000  


Q ss_pred             ccceEEEEeCC--CceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          349 EWSFAQFHIPE--VTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       349 ~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                           +.+-..  -....+.++++ +-|+++|....|-+|.+++
T Consensus       575 -----ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  575 -----TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE  613 (893)
T ss_pred             -----ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence                 000000  13346789999 7788888889999999886

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.4e-30  Score=233.83  Aligned_cols=279  Identities=18%  Similarity=0.252  Sum_probs=229.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+|.++|++++|+|++++|++++ +|.+++|++.+.......  ..+...+..+.|.+++..+++++.+     +.|+
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~   76 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL--KGHTGPVRDVAASADGTYLASGSSD-----KTIR   76 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE--ecCCcceeEEEECCCCCEEEEEcCC-----CeEE
Confidence            4568999999999999999999999 999999999875543333  3566667788999988778887777     9999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--E-cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      +||+.+++.+..+. +...+.++.|++++.+++  . ++.|++||+.+++....+..+...+  .++.+++++.++++ +
T Consensus        77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~-~  153 (289)
T cd00200          77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV--NSVAFSPDGTFVAS-S  153 (289)
T ss_pred             EEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE--EEEEEcCcCCEEEE-E
Confidence            99999888887777 777999999999977776  3 8999999999888888888666644  44555555566654 5


Q ss_pred             CCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198          194 LQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (411)
Q Consensus       194 ~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (411)
                      +.++.|++|+.. .+....+..|...+.++.|+|+++.|++++.++. |++||+++++.+..+..  +...+.++.|+|+
T Consensus       154 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~  230 (289)
T cd00200         154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPD  230 (289)
T ss_pred             cCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcCC
Confidence            569999998876 5667788889999999999999999999999999 99999999888888765  6779999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccce
Q 015198          273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF  352 (411)
Q Consensus       273 g~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (411)
                      +.++++++.||.|++|++.+++...                                                       
T Consensus       231 ~~~~~~~~~~~~i~i~~~~~~~~~~-------------------------------------------------------  255 (289)
T cd00200         231 GYLLASGSEDGTIRVWDLRTGECVQ-------------------------------------------------------  255 (289)
T ss_pred             CcEEEEEcCCCcEEEEEcCCceeEE-------------------------------------------------------
Confidence            8899888889999999998765432                                                       


Q ss_pred             EEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198          353 AQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (411)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~  386 (411)
                       .+..+......++|+++ +.|++++.||.+++|+
T Consensus       256 -~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         256 -TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -EccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence             12222234566889888 7888899999999984

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.9e-32  Score=254.11  Aligned_cols=244  Identities=16%  Similarity=0.257  Sum_probs=217.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc--------c---------------------eEEeecCCCCEEEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK--------E---------------------TFRRDLKSGGFRIV   91 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~--------~---------------------~~~~~~~~~~~~~~   91 (411)
                      .....++|..|++|+++||.|- |..|++|.+.+.+        .                     .....+-+|...|.
T Consensus       376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy  455 (707)
T KOG0263|consen  376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY  455 (707)
T ss_pred             EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence            3456789999999999999999 9999999987411        0                     01122347888999


Q ss_pred             EEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEE
Q 015198           92 EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQ  167 (411)
Q Consensus        92 ~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~  167 (411)
                      ...|+|+..+|+++++|     +++++|.+.+..++-.++ |..+|..+.|+|-|.+++   .|++.++|.....++++.
T Consensus       456 g~sFsPd~rfLlScSED-----~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi  530 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSED-----SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI  530 (707)
T ss_pred             eeeecccccceeeccCC-----cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence            99999999999999999     999999999999999998 999999999999999999   799999999999999999


Q ss_pred             EeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198          168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (411)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (411)
                      +.+|...+.++.|+|+.  .+++ +|+.|.+|++|+.. +..++.|.+|.++|.+++|+|+|++|++|+.|+. |.+||+
T Consensus       531 faghlsDV~cv~FHPNs--~Y~a-TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl  606 (707)
T KOG0263|consen  531 FAGHLSDVDCVSFHPNS--NYVA-TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDL  606 (707)
T ss_pred             hcccccccceEEECCcc--cccc-cCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEc
Confidence            99999877777776654  5665 58999999998864 6788999999999999999999999999999999 999999


Q ss_pred             CCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          247 VDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       247 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      .+++.+..+.+  |.+.|.++.|+.||..||+|+.|.+|++||+......
T Consensus       607 ~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  607 ANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             CCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            99999999999  7899999999999999999999999999999877654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.9e-31  Score=227.32  Aligned_cols=293  Identities=17%  Similarity=0.185  Sum_probs=243.5

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      ...+.+|.+.|.|+++.|-+++|++|+ |++|+|||+.+++..+.  +.+|...+..+.+++..-++.++++|     +.
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt--ltGhi~~vr~vavS~rHpYlFs~ged-----k~  216 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT--LTGHIETVRGVAVSKRHPYLFSAGED-----KQ  216 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe--ecchhheeeeeeecccCceEEEecCC-----Ce
Confidence            355789999999999999999999999 99999999998665444  44788889999999999999999998     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      |+.||++.++.++.+. |-..|.+++.+|.-..++   .|..+++||+++...+..+.+|.+++..+.+.+..  ..++ 
T Consensus       217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d--pqvi-  293 (460)
T KOG0285|consen  217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD--PQVI-  293 (460)
T ss_pred             eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC--CceE-
Confidence            9999999999999987 999999999999887777   79999999999999999999999977665555432  2343 


Q ss_pred             ecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198          192 PGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       192 ~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (411)
                      +|+.|++|++|+.. ++....+..|...+.+++.+|....+|+++.|.  |+-|++..|..+..+.+  |.+.|++++.+
T Consensus       294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~~n  369 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLSVN  369 (460)
T ss_pred             EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeeeec
Confidence            58899999998865 577788899999999999999999999999886  99999999999999887  88899999998


Q ss_pred             CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccccc
Q 015198          271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW  350 (411)
Q Consensus       271 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (411)
                      .|| ++++|+++|.|.+||.++|-+-+.....                                      +.|-...++ 
T Consensus       370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~--------------------------------------vqpGSl~sE-  409 (460)
T KOG0285|consen  370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI--------------------------------------VQPGSLESE-  409 (460)
T ss_pred             cCc-eEEEcCCceEEEEEecCcCccccccccc--------------------------------------ccCCccccc-
Confidence            886 6779999999999999998755311111                                      111111111 


Q ss_pred             ceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCCC
Q 015198          351 SFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHG  392 (411)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~  392 (411)
                               ..+..++|... .+|+++..|-.+.+|.-|+.-.
T Consensus       410 ---------agI~as~fDktg~rlit~eadKtIk~~keDe~aT  443 (460)
T KOG0285|consen  410 ---------AGIFASCFDKTGSRLITGEADKTIKMYKEDEHAT  443 (460)
T ss_pred             ---------cceeEEeecccCceEEeccCCcceEEEecccccC
Confidence                     23456677665 8899999999999999887433

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-31  Score=217.42  Aligned_cols=242  Identities=12%  Similarity=0.152  Sum_probs=200.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....||+..|..+..++||++.++++ |+.+++||+.+++...  .|.+|...+.+++++++...+++|+.|     ++|
T Consensus        57 r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~--~f~GH~~dVlsva~s~dn~qivSGSrD-----kTi  129 (315)
T KOG0279|consen   57 RRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR--RFVGHTKDVLSVAFSTDNRQIVSGSRD-----KTI  129 (315)
T ss_pred             eeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEE--EEEecCCceEEEEecCCCceeecCCCc-----cee
Confidence            44788999999999999999999999 9999999999864433  355999999999999999999999998     999


Q ss_pred             EEEECCCCcEEEEEe---ecCceeEEEEcCC--eEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198          117 IIWDDHQSRCIGEFA---FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~---~~~~i~~~~~~~~--~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                      ++|++. +.+..++.   +...|.++.|+|+  ..+++   .|++|++||+++.+..+.+.+|.+.+..+.+++  ||.+
T Consensus       130 klwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp--DGsl  206 (315)
T KOG0279|consen  130 KLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP--DGSL  206 (315)
T ss_pred             eeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC--CCCE
Confidence            999954 45555554   3789999999998  56666   799999999999999999999988555555555  5556


Q ss_pred             EEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC-------CC
Q 015198          189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-------DR  261 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-------~~  261 (411)
                      .+ +|+.||.+.+|+.+.........|...|.+++|+|+.-.|+.+.. .. |+|||+.++.++.++....       ..
T Consensus       207 ca-sGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~-~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~  283 (315)
T KOG0279|consen  207 CA-SGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATA-TS-IKIWDLESKAVVEELKLDGIGPSSKAGD  283 (315)
T ss_pred             Ee-cCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccC-Cc-eEEEeccchhhhhhccccccccccccCC
Confidence            65 488999999999887666666778999999999999877776654 44 9999999998877665321       12


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      ....+++|++||+.|++|-.|+.|++|.+..
T Consensus       284 ~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  284 PICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             cEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            2456789999999999999999999999853

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.8e-30  Score=210.71  Aligned_cols=287  Identities=12%  Similarity=0.175  Sum_probs=228.8

Q ss_pred             CccccCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCC-CcceEEeec-CCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEP-FKETFRRDL-KSGGFRIVEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      +.....+|.++|..++|+|- |..||+++ |+.|+||+... .....+..+ ..|...+.+++|+|.+.+|++++.|   
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD---   82 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD---   82 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc---
Confidence            34567899999999999998 89999999 99999999884 222233222 3577889999999999999999999   


Q ss_pred             CCCeEEEEECCCC--cEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCC---ceeeEEEeccCCCcceEEEcc
Q 015198          112 PPTKVIIWDDHQS--RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD---LKLLHQIETLANLRGLCCLSH  182 (411)
Q Consensus       112 ~d~~i~vwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~  182 (411)
                        .++.||.-..+  +++..+. |...|.+++|+++|.+++   .|..|-||.+..   .++...++.|...+..+.++|
T Consensus        83 --~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP  160 (312)
T KOG0645|consen   83 --ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP  160 (312)
T ss_pred             --ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence              99999985544  6777777 999999999999999999   799999999863   467788899999888888887


Q ss_pred             CCCceEEEEecCCCCeEEEEEcC-C---cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC
Q 015198          183 HSSTSVLACPGLQRGQVRIEHFG-L---NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (411)
Q Consensus       183 ~~~~~~l~~~g~~dg~i~i~~~~-~---~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (411)
                      ..+  +|+ +++.|.+|++|... .   .+++.+.+|...|.+++|++.|..|++++.|+. ++||-..+     .+.. 
T Consensus       161 t~d--lL~-S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~-----~~~~-  230 (312)
T KOG0645|consen  161 TED--LLF-SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYT-----DLSG-  230 (312)
T ss_pred             Ccc--eeE-EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeecc-----Ccch-
Confidence            654  454 57899999996544 2   578999999999999999999999999999999 99998652     2222 


Q ss_pred             CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccccc
Q 015198          259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFM  338 (411)
Q Consensus       259 ~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (411)
                      .|...++.+.|.  ...|++++.|+.|++|.-...-..                                    ..++.+
T Consensus       231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~------------------------------------p~~~l~  272 (312)
T KOG0645|consen  231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDE------------------------------------PSWNLL  272 (312)
T ss_pred             hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCC------------------------------------chHHHH
Confidence            266789999998  457999999999999987732110                                    111111


Q ss_pred             ccccCcccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEe
Q 015198          339 RGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~  388 (411)
                      .             ..-+.++..++.++|.|.  ++|++++.||.+.+|++.
T Consensus       273 ~-------------~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  273 A-------------KKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             H-------------hhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            1             122334456778999994  999999999999999875

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.2e-30  Score=245.46  Aligned_cols=251  Identities=17%  Similarity=0.250  Sum_probs=211.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      |...|.++.|+++|++|++++ ++.+++|+...........+.+|...|..+.|++++.++++++.|     ++|++||+
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D-----~tiriwd~  232 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD-----KTLRIWDL  232 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC-----ceEEEeec
Confidence            478999999999999999998 999999999654422333345889999999999999999999998     99999999


Q ss_pred             -CCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          122 -HQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       122 -~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                       ..+.+++++. |...|++++|+|++++++   .|++|++||+++++++..+..|...+..  +++++++.+|++ ++.|
T Consensus       233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~--~~f~~d~~~l~s-~s~d  309 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG--LAFSPDGNLLVS-ASYD  309 (456)
T ss_pred             cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE--EEECCCCCEEEE-cCCC
Confidence             5568889987 999999999999997777   7999999999999999999999985554  455556677776 5789


Q ss_pred             CeEEEEEcCCcc---eEEEeccccc--eeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC-cceEEEEeC
Q 015198          197 GQVRIEHFGLNM---IKLINAHDSH--IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-AEIYSIALS  270 (411)
Q Consensus       197 g~i~i~~~~~~~---~~~~~~~~~~--i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~~v~~l~~s  270 (411)
                      +.|++|+.....   +..+..+...  ++++.|+|++.+|++++.|+. +++||+..+..+..+..+... ..+.+...+
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~  388 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS  388 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEeccccc
Confidence            999999988766   4566666555  999999999999999999999 999999999999998884222 145556667


Q ss_pred             CCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198          271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (411)
Q Consensus       271 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~  302 (411)
                      +.+.++++|+.|+.|++|++.++.....+..|
T Consensus       389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             CCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            89999999999999999999998766544444

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=2.3e-30  Score=212.03  Aligned_cols=247  Identities=16%  Similarity=0.175  Sum_probs=203.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCe
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTK  115 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~  115 (411)
                      ....+|...|.+|+|+.+|..|++|+ |+++.+|+++...........+|...+..++|++ +...+++++.|     ..
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d-----k~   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD-----KT   88 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCC-----ce
Confidence            55778999999999999999999999 9999999999876555555567777888888775 33455555555     99


Q ss_pred             EEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      |++||++.++++..+.....-.-+.|+|++.+++   .|..|.+.|.++.+.+...+.... +.-+++.  .++.+++.+
T Consensus        89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e-~ne~~w~--~~nd~Fflt  165 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE-VNEISWN--NSNDLFFLT  165 (313)
T ss_pred             EEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-eeeeeec--CCCCEEEEe
Confidence            9999999999999999777777889999998888   688999999988877766544332 2233444  333444333


Q ss_pred             cCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198          193 GLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       193 g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (411)
                       ...|.|.| --...+++..+++|.....||.|+|+|++||+|+.|.. +.+||+...-+++.+..  +.-+|..|.|+.
T Consensus       166 -~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isR--ldwpVRTlSFS~  241 (313)
T KOG1407|consen  166 -NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISR--LDWPVRTLSFSH  241 (313)
T ss_pred             -cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeecc--ccCceEEEEecc
Confidence             24689998 33367899999999999999999999999999999999 99999998888888888  778999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccccccC
Q 015198          272 NVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       272 dg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      ||++||++++|..|-|=++++|.+.
T Consensus       242 dg~~lASaSEDh~IDIA~vetGd~~  266 (313)
T KOG1407|consen  242 DGRMLASASEDHFIDIAEVETGDRV  266 (313)
T ss_pred             CcceeeccCccceEEeEecccCCeE
Confidence            9999999999999999999999864

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.98  E-value=2.6e-29  Score=224.16  Aligned_cols=285  Identities=16%  Similarity=0.140  Sum_probs=225.5

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEee-cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRD-LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....|..-|.|+.|+|||+++|+.+ ||.|.|||-.+++++.... -..|...|.++.|+||...+++++.|     .++
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD-----kt~  259 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD-----KTI  259 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC-----ceE
Confidence            4678999999999999999999988 9999999999877766543 23788899999999999999999988     999


Q ss_pred             EEEECCCCcEEEEEeecC----ceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          117 IIWDDHQSRCIGEFAFRS----DVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      +|||+.++++++++....    ....+-|-.+..+.+ .+|.|.+++...+..++.+.+|...++.+.+++  ++.+|+ 
T Consensus       260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~--d~~~i~-  336 (603)
T KOG0318|consen  260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP--DGKTIY-  336 (603)
T ss_pred             EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC--CCCEEE-
Confidence            999999999999998433    334455665555555 899999999998888888888887555444444  334443 


Q ss_pred             ecCCCCeEEEEEcC------------------------------------------------------------------
Q 015198          192 PGLQRGQVRIEHFG------------------------------------------------------------------  205 (411)
Q Consensus       192 ~g~~dg~i~i~~~~------------------------------------------------------------------  205 (411)
                      +|+.||.|.-|+..                                                                  
T Consensus       337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence            35555555555432                                                                  


Q ss_pred             ---------------------------------------------------------C---cceEEEeccccceeEEEec
Q 015198          206 ---------------------------------------------------------L---NMIKLINAHDSHIACFTLT  225 (411)
Q Consensus       206 ---------------------------------------------------------~---~~~~~~~~~~~~i~~l~~s  225 (411)
                                                                               +   .....+..|.++|++++|+
T Consensus       417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS  496 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS  496 (603)
T ss_pred             CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence                                                                     1   1122345688899999999


Q ss_pred             CCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCC
Q 015198          226 LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLST  305 (411)
Q Consensus       226 p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~  305 (411)
                      ||+.+||++...+. +.+||+.+.+. ..-....|.+.|.+++|+|+..++|+|+.|..|.||+++.+.+--...+    
T Consensus       497 pd~~yla~~Da~rk-vv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ikn----  570 (603)
T KOG0318|consen  497 PDGAYLAAGDASRK-VVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKN----  570 (603)
T ss_pred             CCCcEEEEeccCCc-EEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecc----
Confidence            99999999999999 99999988876 3434444889999999999999999999999999999998865311111    


Q ss_pred             CCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEE
Q 015198          306 PSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRC  385 (411)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~  385 (411)
                                                                         .+...+..+.|-.+..++..|.|..+.+|
T Consensus       571 ---------------------------------------------------AH~~gVn~v~wlde~tvvSsG~Da~iK~W  599 (603)
T KOG0318|consen  571 ---------------------------------------------------AHLGGVNSVAWLDESTVVSSGQDANIKVW  599 (603)
T ss_pred             ---------------------------------------------------ccccCceeEEEecCceEEeccCcceeEEe
Confidence                                                               11234778899999999999999999999


Q ss_pred             EEe
Q 015198          386 SFD  388 (411)
Q Consensus       386 ~~~  388 (411)
                      ++.
T Consensus       600 ~v~  602 (603)
T KOG0318|consen  600 NVT  602 (603)
T ss_pred             ccc
Confidence            875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.98  E-value=2.6e-30  Score=227.65  Aligned_cols=280  Identities=18%  Similarity=0.260  Sum_probs=229.1

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEe-CCcEEEEecCC------CcceEEeec------CCCCEEEEEEeccCCeEEEEecC
Q 015198           41 DVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEP------FKETFRRDL------KSGGFRIVEMLFRCNILALVGAG  106 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~-~la~g~-dg~i~iw~~~~------~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~s~~  106 (411)
                      ..|+.+|.+.+|+|-.. .|++|+ +-+.++|++..      .+..++..+      ......++++.|+.+|..|++|.
T Consensus       175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~  254 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS  254 (524)
T ss_pred             ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence            34999999999999877 888998 99999999863      111111111      12345789999999999999999


Q ss_pred             CCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc
Q 015198          107 DNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH  182 (411)
Q Consensus       107 ~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (411)
                      .+     |.+++|+ ..|..+.++. |+++|.++.|+.+|.+++   .|+++.+||..++...+.+..|..+.  +.+.|
T Consensus       255 ~~-----G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~--lDVdW  326 (524)
T KOG0273|consen  255 ED-----GEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA--LDVDW  326 (524)
T ss_pred             cC-----cEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc--cceEE
Confidence            98     9999999 6777777776 999999999999999988   79999999999999999998887652  33333


Q ss_pred             CCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC
Q 015198          183 HSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR  261 (411)
Q Consensus       183 ~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~  261 (411)
                      -.+.. +++ .+.|+.|++.... ..++.++.+|.+.|.++.|+|.|.+|++++.|++ ++||..........+..  |.
T Consensus       327 ~~~~~-F~t-s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~~~~~~~~~l~~--Hs  401 (524)
T KOG0273|consen  327 QSNDE-FAT-SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSMGQSNSVHDLQA--HS  401 (524)
T ss_pred             ecCce-Eee-cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeecCCCcchhhhhh--hc
Confidence            33322 444 5689999995554 5788999999999999999999999999999999 99999988888888888  88


Q ss_pred             cceEEEEeCCCC---------CEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCC
Q 015198          262 AEIYSIALSPNV---------QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPG  332 (411)
Q Consensus       262 ~~v~~l~~spdg---------~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (411)
                      ..|..+.|+|+|         ..|++++.|++|++||+..+.+..                                   
T Consensus       402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~-----------------------------------  446 (524)
T KOG0273|consen  402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH-----------------------------------  446 (524)
T ss_pred             cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE-----------------------------------
Confidence            899999999965         479999999999999999998653                                   


Q ss_pred             CcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          333 SSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                           .|--+...++.++|+|+ ..++.|+-||.|++|+...
T Consensus       447 ---------------------~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  447 ---------------------TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             ---------------------eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence                                 22222346788999999 6666667799999998876

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.98  E-value=1.6e-29  Score=210.27  Aligned_cols=238  Identities=16%  Similarity=0.194  Sum_probs=203.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC--c--ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF--K--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      .+-....|..++|+|.|+++|+|+ |+...||++.+.  +  ......+.+|...+.++.|-++..++.+.+ |     .
T Consensus        93 ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG-D-----~  166 (343)
T KOG0286|consen   93 IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG-D-----M  166 (343)
T ss_pred             EecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC-C-----c
Confidence            334456799999999999999999 999999999853  1  233445778888899999988776655544 4     9


Q ss_pred             eEEEEECCCCcEEEEEe-ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      +..+||+++++.+..+. |.+.|.++.++| +++.++   .|+..++||++.+.+.+.|.+|...+..++|.|++.  -+
T Consensus       167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~--af  244 (343)
T KOG0286|consen  167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD--AF  244 (343)
T ss_pred             eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC--ee
Confidence            99999999999999998 999999999999 887777   799999999999999999999999888887777664  45


Q ss_pred             EEecCCCCeEEEEEcCC-cceEEEe--ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE
Q 015198          190 ACPGLQRGQVRIEHFGL-NMIKLIN--AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~-~~~~~~~--~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (411)
                      + +|++|++.++++.+. +.+..+.  .-..+|++++|+..|++|++|..|.+ +.+||.-.++.+..+.+  |+..|.+
T Consensus       245 a-tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~e~vg~L~G--HeNRvSc  320 (343)
T KOG0286|consen  245 A-TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKGERVGVLAG--HENRVSC  320 (343)
T ss_pred             e-ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeeccccceEEEeec--cCCeeEE
Confidence            4 599999999977765 4444443  23568999999999999999999999 99999999999999998  8999999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEE
Q 015198          267 IALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       267 l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      +..+|||.-|++|+.|.+++||.
T Consensus       321 l~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  321 LGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999994

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.2e-30  Score=242.39  Aligned_cols=284  Identities=11%  Similarity=0.201  Sum_probs=243.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      .+.....|..++|+|...+++++- .|.|++||..-+.  +...|..|...+..+.|+|..-++++|++|     ..|+|
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~qplFVSGGDD-----ykIkV   77 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPTQPLFVSGGDD-----YKIKV   77 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhh--HHhhhhccCCccceeeecCCCCeEEecCCc-----cEEEE
Confidence            445667899999999999999999 9999999987533  233366899999999999999999999998     99999


Q ss_pred             EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      |+.++.+++.++. |-.-|..+.|++.-.+++   .|.+|+||+..+.+++..+.+|.+  .++|..++|...+++ +++
T Consensus        78 WnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH--YVMcAqFhptEDlIV-SaS  154 (1202)
T KOG0292|consen   78 WNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH--YVMCAQFHPTEDLIV-SAS  154 (1202)
T ss_pred             EecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce--EEEeeccCCccceEE-Eec
Confidence            9999999999987 999999999999999998   789999999999999999999998  667767776555555 588


Q ss_pred             CCCeEEEEEcCC------------------------------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198          195 QRGQVRIEHFGL------------------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF  244 (411)
Q Consensus       195 ~dg~i~i~~~~~------------------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw  244 (411)
                      -|.+|++|+..+                              -....+.+|...|+-++|+|.-.+|++|+.|.. |++|
T Consensus       155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlW  233 (1202)
T KOG0292|consen  155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLW  233 (1202)
T ss_pred             ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEE
Confidence            999999999875                              012456799999999999999999999999999 9999


Q ss_pred             ECCCCc--eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccc
Q 015198          245 NTVDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTL  322 (411)
Q Consensus       245 d~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (411)
                      .+...+  .+-+..+  |.+.|.++-|+|...++++.++|++|+|||+......+                         
T Consensus       234 rmnetKaWEvDtcrg--H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~-------------------------  286 (1202)
T KOG0292|consen  234 RMNETKAWEVDTCRG--HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ-------------------------  286 (1202)
T ss_pred             Eeccccceeehhhhc--ccCCcceEEecCccceeEecCCCccEEEEeccccccee-------------------------
Confidence            986544  3445556  88899999999999999999999999999999877543                         


Q ss_pred             cCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEecCCC
Q 015198          323 ISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHG  392 (411)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~  392 (411)
                                                     +|+-..+...+++-+|.-.|++++.|+-+.+|.++-+..
T Consensus       287 -------------------------------tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp  325 (1202)
T KOG0292|consen  287 -------------------------------TFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP  325 (1202)
T ss_pred             -------------------------------eeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc
Confidence                                           566666677788999999999999999999999996543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.98  E-value=1.6e-31  Score=231.23  Aligned_cols=240  Identities=14%  Similarity=0.217  Sum_probs=202.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      -+..|..|.|.|+|+.|++|+ .|.+.+|+.....  ++.-++.|...|..+.|+.++..+++++.+     |.|++|+.
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws~~g~wmiSgD~g-----G~iKyWqp  167 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--FETILQAHDSPVRTMKWSHNGTWMISGDKG-----GMIKYWQP  167 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceee--HHHHhhhhcccceeEEEccCCCEEEEcCCC-----ceEEeccc
Confidence            456899999999999999999 9999999986433  223345899999999999999999999998     99999995


Q ss_pred             CCCcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          122 HQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       122 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      .-. .++.++  |...|++++|+|+...++   .||.|+|||....+....+.+|.-.+..+  .|+|...+|+ +|+.|
T Consensus       168 nmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv--dWHP~kgLia-sgskD  243 (464)
T KOG0284|consen  168 NMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV--DWHPTKGLIA-SGSKD  243 (464)
T ss_pred             chh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCccee--ccCCccceeE-EccCC
Confidence            444 344444  569999999999766665   79999999999888888888888755544  5555545555 57899


Q ss_pred             CeEEEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC-CCC
Q 015198          197 GQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-NVQ  274 (411)
Q Consensus       197 g~i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~  274 (411)
                      ..|++|+. .+.++..+.+|...|..+.|++++++|++++.|.. +++||+++.+.++.+++  |+..|+++.|+| ...
T Consensus       244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~~  320 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNES  320 (464)
T ss_pred             ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhc--chhhheeecccccccc
Confidence            99999875 56889999999999999999999999999999999 99999998899999998  899999999999 456


Q ss_pred             EEEEEeCCCcEEEEEccccccC
Q 015198          275 WLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       275 ~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +|.+|+.||.|..|.+...++.
T Consensus       321 lftsgg~Dgsvvh~~v~~~~p~  342 (464)
T KOG0284|consen  321 LFTSGGSDGSVVHWVVGLEEPL  342 (464)
T ss_pred             ceeeccCCCceEEEeccccccc
Confidence            8889999999999999854443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=3.9e-29  Score=255.08  Aligned_cols=291  Identities=15%  Similarity=0.191  Sum_probs=218.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc------eEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCC
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE------TFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQY  111 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~  111 (411)
                      ...|.+.|.+++|+|+|++||+|+ |+.|+||+......      .....+ .+...+..+.|++ ....+++++.|   
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~D---  554 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFE---  554 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCC---
Confidence            445899999999999999999999 99999999753110      011112 2344567778876 45678888887   


Q ss_pred             CCCeEEEEECCCCcEEEEEe-ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc-CCC
Q 015198          112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH-HSS  185 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~  185 (411)
                        +.|++||+.+++.+..+. |...|.+++|+| ++.+++   .|+.|++||+++++.+..+..+.   .+.++.+ .++
T Consensus       555 --g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~---~v~~v~~~~~~  629 (793)
T PLN00181        555 --GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA---NICCVQFPSES  629 (793)
T ss_pred             --CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC---CeEEEEEeCCC
Confidence              999999999999888887 899999999996 666665   69999999999998888886543   3445554 334


Q ss_pred             ceEEEEecCCCCeEEEEEcCCc--ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC------ceEEEEeC
Q 015198          186 TSVLACPGLQRGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG------TRLQEVRR  257 (411)
Q Consensus       186 ~~~l~~~g~~dg~i~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~------~~~~~~~~  257 (411)
                      +.++++ |+.||.|++|+....  .+..+.+|...|.++.|. ++.+|++++.|+. |++||+..+      +.+..+.+
T Consensus       630 g~~lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g  706 (793)
T PLN00181        630 GRSLAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG  706 (793)
T ss_pred             CCEEEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC
Confidence            566665 779999999997653  456778999999999997 7789999999999 999999743      56777877


Q ss_pred             CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccc
Q 015198          258 GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSF  337 (411)
Q Consensus       258 ~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (411)
                        |...+..++|++++.+|++|+.|+.|++|+...+.........                           .       
T Consensus       707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~---------------------------~-------  750 (793)
T PLN00181        707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK---------------------------T-------  750 (793)
T ss_pred             --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecc---------------------------c-------
Confidence              7788999999999999999999999999998765322000000                           0       


Q ss_pred             cccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEE
Q 015198          338 MRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (411)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~  387 (411)
                       ...++.        ....-....+..++|+++ ..|++++.||.|.+|.+
T Consensus       751 -~~~~~~--------~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        751 -IDPVSG--------LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             -CCcccc--------cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence             000000        000111235677889988 78899999999999986

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.2e-29  Score=232.19  Aligned_cols=247  Identities=16%  Similarity=0.193  Sum_probs=206.7

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+|...|++++++|||+++|+|. ||.|+|||...+-.  ..+|..|...+..+.|...+..+++.+-|     |+|+
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLD-----GtVR  417 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLD-----GTVR  417 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE--EEEeccCCCceEEEEEEecCCEEEEeecC-----CeEE
Confidence            3578999999999999999999999 99999999886333  33466899999999999999999999998     9999


Q ss_pred             EEECCCCcEEEEEee--cCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          118 IWDDHQSRCIGEFAF--RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       118 vwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      .||+...+..+++..  +....+++..|.|.+++    ..-.|++|++++|+++..+.+|..|+..++|++.+  ..|+ 
T Consensus       418 AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~--~~La-  494 (893)
T KOG0291|consen  418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG--SLLA-  494 (893)
T ss_pred             eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc--CeEE-
Confidence            999999999999985  44566888888899888    23469999999999999999999987766666655  4665 


Q ss_pred             ecCCCCeEEEEEcCCc--ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC-----------
Q 015198          192 PGLQRGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG-----------  258 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~-----------  258 (411)
                      +|+.|.+|++|+.-..  .+..+ .+...+..++|+|+|+.||++.-||. |.+||++.+..+..+.+.           
T Consensus       495 S~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgq-Itf~d~~~~~q~~~IdgrkD~~~gR~~~D  572 (893)
T KOG0291|consen  495 SGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQ-ITFFDIKEAVQVGSIDGRKDLSGGRKETD  572 (893)
T ss_pred             eccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecce-EEEEEhhhceeeccccchhhccccccccc
Confidence            5899999999986544  44444 36778899999999999999999999 999999876555433221           


Q ss_pred             -------CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198          259 -------VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       259 -------~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                             ......+.|++++||..|++|+..+.|.||++.++-..+
T Consensus       573 ~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk  618 (893)
T KOG0291|consen  573 RITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK  618 (893)
T ss_pred             eeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence                   122478999999999999999999999999999986554

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=2.3e-31  Score=235.08  Aligned_cols=285  Identities=14%  Similarity=0.172  Sum_probs=232.9

Q ss_pred             CccccCCCCCCeEEEEEcC-CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~-~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      ......+|...|+++.|.| .+.+|++++ |+.|+||++-..+.++ ..+.+|...|.++.|+.++..+.+++.|     
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l-rtf~gH~k~Vrd~~~s~~g~~fLS~sfD-----  279 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL-RTFKGHRKPVRDASFNNCGTSFLSASFD-----  279 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee-hhhhcchhhhhhhhccccCCeeeeeecc-----
Confidence            3455789999999999999 788899999 9999999998755544 4466999999999999999999999998     


Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeE-EE-E--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI-VV-V--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~-~~-~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      +.|++||+++|+++..+.....+.++.|+|++. .+ +  .|+.|+.||+++++.++.+..|-..+  ..+.+-+++..+
T Consensus       280 ~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i--~~i~F~~~g~rF  357 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI--LDITFVDEGRRF  357 (503)
T ss_pred             eeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe--eeeEEccCCceE
Confidence            999999999999999999999999999999983 33 3  79999999999999999998887744  455555566677


Q ss_pred             EEecCCCCeEEEEEcCCcceEEE--eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC---ceEEEEeCCCCCcce
Q 015198          190 ACPGLQRGQVRIEHFGLNMIKLI--NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG---TRLQEVRRGVDRAEI  264 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~---~~~~~~~~~~~~~~v  264 (411)
                      ++ .+.|+.++||.........+  ..+.....++..+|++.+++.-+.|+. |.+|.+...   .....++++.-.+.-
T Consensus       358 is-sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaGys  435 (503)
T KOG0282|consen  358 IS-SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAGYS  435 (503)
T ss_pred             ee-eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccCce
Confidence            65 56899999998876443322  333445668999999999999999999 999986432   223456664445667


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCc
Q 015198          265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK  344 (411)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (411)
                      ..+.|||||.+|++|..||.+.+||.++-+...                                               
T Consensus       436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~-----------------------------------------------  468 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS-----------------------------------------------  468 (503)
T ss_pred             eeEEEcCCCCeEEeecCCccEEEeechhhhhhh-----------------------------------------------
Confidence            889999999999999999999999999987653                                               


Q ss_pred             ccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEE
Q 015198          345 YFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCS  386 (411)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~  386 (411)
                               .++.+++....+.|+|.  ..+++++-||.|++|.
T Consensus       469 ---------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  469 ---------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ---------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence                     34444456667889997  8888888899999984

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.6e-29  Score=204.11  Aligned_cols=248  Identities=13%  Similarity=0.198  Sum_probs=204.9

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        35 ~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      ..+..+..|.++|.++.|+-||+|.++++ |.+|++|+...+.  +..+..+|...+.....+.+...+++++.|     
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~--liktYsghG~EVlD~~~s~Dnskf~s~GgD-----   80 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA--LIKTYSGHGHEVLDAALSSDNSKFASCGGD-----   80 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc--eeeeecCCCceeeeccccccccccccCCCC-----
Confidence            34556789999999999999999999888 9999999977544  334455888999999999899899999988     


Q ss_pred             CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCC--ceeeEEEeccCCCcceEEEccCCCce
Q 015198          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD--LKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      ..+.+||+.+|+.++.+. |.+.|+.++|+.+...++   .|.++++||-++  .++++.+......+  ..+....   
T Consensus        81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V--~Si~v~~---  155 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGV--SSIDVAE---  155 (307)
T ss_pred             ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCce--eEEEecc---
Confidence            999999999999999998 999999999999999988   799999999865  47777777666644  4444432   


Q ss_pred             EEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198          188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (411)
                      ..+.+|+.||+++.++.+...+.. .-...+|+++.|+++++.+++++.|+. +++.|-.+|+++..++++.....-...
T Consensus       156 heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc  233 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDC  233 (307)
T ss_pred             cEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeee
Confidence            234469999999997765443322 224578999999999999999999999 999999999999999995444455667


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +++.....+++|++||.|++||+......
T Consensus       234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~  262 (307)
T KOG0316|consen  234 CLNQSDTHVFSGSEDGKVYFWDLVDETQI  262 (307)
T ss_pred             eecccceeEEeccCCceEEEEEeccceee
Confidence            78888889999999999999999887643

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-29  Score=208.42  Aligned_cols=299  Identities=13%  Similarity=0.109  Sum_probs=247.1

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      .+.+|+.+++.+.|+.+|.+|.++. |....||-..+++.+-..  .+|...+.++..+.+...+++|+.|     .+++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty--~GHtGavW~~Did~~s~~liTGSAD-----~t~k   77 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY--DGHTGAVWCCDIDWDSKHLITGSAD-----QTAK   77 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee--cCCCceEEEEEecCCcceeeecccc-----ceeE
Confidence            4678999999999999999999999 999999988765655444  4888899999988899999999998     9999


Q ss_pred             EEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E------cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      +||+++|+++..++.+.+|..+.|++++.+++  .      .+.|.++|++....                       .+
T Consensus        78 LWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~-----------------------~~  134 (327)
T KOG0643|consen   78 LWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS-----------------------DI  134 (327)
T ss_pred             EEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh-----------------------hh
Confidence            99999999999999999999999999988776  2      34455555532110                       00


Q ss_pred             EEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE-eCCCCCcceEEEE
Q 015198          190 ACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV-RRGVDRAEIYSIA  268 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~-~~~~~~~~v~~l~  268 (411)
                                    ....+...+..+...++.+-|.|-+++|++|.+||. |.+||+++|+.+..- ..  |...|+.|+
T Consensus       135 --------------~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~-is~~da~~g~~~v~s~~~--h~~~Ind~q  197 (327)
T KOG0643|consen  135 --------------DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS-ISIYDARTGKELVDSDEE--HSSKINDLQ  197 (327)
T ss_pred             --------------cccCceEEecCCccceeeeeecccCCEEEEecCCCc-EEEEEcccCceeeechhh--hcccccccc
Confidence                          011234445566788899999999999999999999 999999998665443 34  778999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCc--cccCCCCCCCCCCcccccccccCccc
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD--TLISPSTGANPGSSLSFMRGVLPKYF  346 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (411)
                      +++|..++++++.|.+-++||+.+-+..++...+     ||+|.+.+++.++  .++.+.......+...-.+++..++|
T Consensus       198 ~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy  272 (327)
T KOG0643|consen  198 FSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY  272 (327)
T ss_pred             ccCCcceEEecccCccceeeeccceeeEEEeeec-----ccccceecccccceEEecCCceeeeeeeecccccchhhhHH
Confidence            9999999999999999999999999999999998     9999999999988  44555555566666666677777777


Q ss_pred             cc--ccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          347 SS--EWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       347 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                      +-  +..+.+++-+.+....++|+|+ ....+|+.||.|.+.-++.
T Consensus       273 h~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  273 HLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             HHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            65  5668889999999999999999 6677788899999998886

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.5e-30  Score=231.11  Aligned_cols=246  Identities=13%  Similarity=0.187  Sum_probs=212.5

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ....+.+.|.++.|+|....++++- +|.|.|||.++...+  ..++-....+.+..|-.....+++|++|     ..|+
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV--ksfeV~~~PvRa~kfiaRknWiv~GsDD-----~~Ir   80 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV--KSFEVSEVPVRAAKFIARKNWIVTGSDD-----MQIR   80 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceee--eeeeecccchhhheeeeccceEEEecCC-----ceEE
Confidence            3455899999999999999999999 999999999975543  3344667778888888888999999998     9999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      ||+..+++.+..+. |..-|++++.+|...++.   .|-.|++||.+.. .+.+.+++|.+.+..+++.|... ..+| +
T Consensus        81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-ntFa-S  158 (794)
T KOG0276|consen   81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-NTFA-S  158 (794)
T ss_pred             EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc-ccee-e
Confidence            99999999999999 999999999999999888   6889999999764 67888999998444444444433 3344 5


Q ss_pred             cCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCC--CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198          193 GLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDG--LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (411)
Q Consensus       193 g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g--~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (411)
                      ++-|++|++|.... .+..++++|...|+++.+-+-|  .+|++|+.|.. |+|||..+..+++++.+  |...|..+.|
T Consensus       159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v~f  235 (794)
T KOG0276|consen  159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFVFF  235 (794)
T ss_pred             eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEEEe
Confidence            78999999998765 5778899999999999998765  59999999999 99999999999999999  7889999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          270 SPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       270 spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +|.=.++++|++||+++||+-.+-+..
T Consensus       236 hp~lpiiisgsEDGTvriWhs~Ty~lE  262 (794)
T KOG0276|consen  236 HPELPIIISGSEDGTVRIWNSKTYKLE  262 (794)
T ss_pred             cCCCcEEEEecCCccEEEecCcceehh
Confidence            999999999999999999998887644

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.7e-30  Score=219.93  Aligned_cols=245  Identities=10%  Similarity=0.191  Sum_probs=218.5

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      ...+.+|.+.|..++|+..|++|++++ |-.+++||.++.....+. +.+|...+.++.|-|.+..+++++.|     .+
T Consensus       143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks-~~gh~h~vS~V~f~P~gd~ilS~srD-----~t  216 (406)
T KOG0295|consen  143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS-LIGHEHGVSSVFFLPLGDHILSCSRD-----NT  216 (406)
T ss_pred             hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH-hcCcccceeeEEEEecCCeeeecccc-----cc
Confidence            345789999999999999999999999 888999999875433333 44888889999999999999999998     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC-------
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS-------  184 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------  184 (411)
                      |+.|++.+|.++.++. |...|.-++.+.||.+++   .|.+|++|-+.++++...+..|..++.++++++..       
T Consensus       217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~  296 (406)
T KOG0295|consen  217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE  296 (406)
T ss_pred             eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence            9999999999999998 899999999999999999   78999999999999999999999998888887632       


Q ss_pred             -----CceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC
Q 015198          185 -----STSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (411)
Q Consensus       185 -----~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (411)
                           ++..+..+++.|++|++|+.. +.++.++.+|...|..++|+|.|+||+++.+|++ +++||++++++..++.. 
T Consensus       297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~a-  374 (406)
T KOG0295|consen  297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEA-  374 (406)
T ss_pred             ccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCC-
Confidence                 122334568999999998876 5788999999999999999999999999999999 99999999999999997 


Q ss_pred             CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198          259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       259 ~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                       |+.-|+++.|..+..++++|+-|.++++|..
T Consensus       375 -h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  375 -HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             -CcceeEEEecCCCCceEEeccccceeeeeec
Confidence             7779999999999999999999999999974

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.3e-30  Score=223.49  Aligned_cols=290  Identities=12%  Similarity=0.088  Sum_probs=236.9

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        35 ~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      .....+..|.+.|+-+.|+++|++||+++ |.+..||.+..... .+..++.+|...+..+.|+||..++++|+.+    
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~----  290 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD----  290 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch----
Confidence            34456789999999999999999999999 99999999865433 3445566899999999999999999999988    


Q ss_pred             CCeEEEEECCCCcEEEEEee--cCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          113 PTKVIIWDDHQSRCIGEFAF--RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                       ..+.+||+.+|.....+.+  ...+.+.+|.||+..++   .|+.+..||+. |+.+..+++... ..+.+++..+||.
T Consensus       291 -e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~-~~v~dlait~Dgk  367 (519)
T KOG0293|consen  291 -EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD-PKVHDLAITYDGK  367 (519)
T ss_pred             -HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc-ceeEEEEEcCCCc
Confidence             8899999999999999884  58899999999998887   69999999985 455555544332 2455666666677


Q ss_pred             EEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198          188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (411)
                      .++..+ .|..|++++...+.-..+.....+|++++++.+|+++++.=.+.. |++||++..+.+..+.++.....+-.-
T Consensus       368 ~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiIrS  445 (519)
T KOG0293|consen  368 YVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFIIRS  445 (519)
T ss_pred             EEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEEEe
Confidence            776655 799999988776665545566789999999999999999888999 999999988888888884333455556


Q ss_pred             EeCC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccc
Q 015198          268 ALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF  346 (411)
Q Consensus       268 ~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (411)
                      +|-. +..++++|++|+.|+||+..+++...++++|.                                           
T Consensus       446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs-------------------------------------------  482 (519)
T KOG0293|consen  446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS-------------------------------------------  482 (519)
T ss_pred             ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc-------------------------------------------
Confidence            6764 55899999999999999999999887666661                                           


Q ss_pred             ccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEec
Q 015198          347 SSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~  389 (411)
                                   ..+.+++|.|.  .+++.++.||.|+||...+
T Consensus       483 -------------~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  483 -------------KTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             -------------ceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence                         36788999997  7899999999999998775

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=9.4e-29  Score=201.25  Aligned_cols=262  Identities=18%  Similarity=0.227  Sum_probs=209.6

Q ss_pred             EEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc--EEEEEe-ec
Q 015198           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA-FR  133 (411)
Q Consensus        58 ~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~--~~~~~~-~~  133 (411)
                      +|++++ |.+||+|...++......  +.....+..+...|+...|+.++.      ..|++||+.++.  ++.++. |.
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~rTi--qh~dsqVNrLeiTpdk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~h~   83 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSRTI--QHPDSQVNRLEITPDKKDLAAAGN------QHVRLYDLNSNNPNPVATFEGHT   83 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEEEE--ecCccceeeEEEcCCcchhhhccC------CeeEEEEccCCCCCceeEEeccC
Confidence            788888 999999999986654444  356677888888999999999887      899999998875  477777 88


Q ss_pred             CceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-ce
Q 015198          134 SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MI  209 (411)
Q Consensus       134 ~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~  209 (411)
                      ..|.++.|..+|+++.   .||+++|||++...+.+.+.. ..++..+.+.++.  ..|+ +|..+|.|++|+.... +.
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQ--teLi-s~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQ--TELI-SGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCc--ceEE-eecCCCcEEEEEccCCccc
Confidence            9999999999999999   799999999999766666653 4666766666653  3444 4789999999998765 33


Q ss_pred             EE-EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc------eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198          210 KL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT------RLQEVRRGVDRAEIYSIALSPNVQWLAVASDK  282 (411)
Q Consensus       210 ~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d  282 (411)
                      .. +......|.++...|||.+|+.+...|. .++|++-++.      ++..++.  |...+..+.+|||+++||+++.|
T Consensus       160 ~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  160 HELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             cccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccccceEhhheec--ccceEEEEEECCCCcEEEeecCC
Confidence            33 3445678999999999999999999999 9999986643      4455666  88899999999999999999999


Q ss_pred             CcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCce
Q 015198          283 GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTH  362 (411)
Q Consensus       283 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (411)
                      .+++||++++--+.+                                                       ...+-...-+
T Consensus       237 ktv~iwn~~~~~kle-------------------------------------------------------~~l~gh~rWv  261 (311)
T KOG0315|consen  237 KTVKIWNTDDFFKLE-------------------------------------------------------LVLTGHQRWV  261 (311)
T ss_pred             ceEEEEecCCceeeE-------------------------------------------------------EEeecCCceE
Confidence            999999998762221                                                       0111122356


Q ss_pred             EEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          363 FIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       363 ~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                      ..|+|+.+ ..|+++++|+.+++|.+..
T Consensus       262 Wdc~FS~dg~YlvTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  262 WDCAFSADGEYLVTASSDHTARLWDLSA  289 (311)
T ss_pred             EeeeeccCccEEEecCCCCceeeccccc
Confidence            67999999 7788888899999999886

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=4e-28  Score=216.62  Aligned_cols=254  Identities=14%  Similarity=0.222  Sum_probs=206.8

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      .....+|..+++-..|+|.|.|+|+|. .|.||||+....+.+++.+++.-...+..+.|+.++..++..++.. -.-|.
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr-erfg~  130 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR-ERFGH  130 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCc-cceeE
Confidence            345679999999999999999999999 9999999998777788877777778888999998887665544420 01266


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      +.+||  +|..+.++. |...|+++.|-|...+-+    .|+.|.+|+=.-.+....+..|...+.  ++.++||+..+|
T Consensus       131 ~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~--~VRysPDG~~Fa  206 (603)
T KOG0318|consen  131 VFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN--CVRYSPDGSRFA  206 (603)
T ss_pred             EEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccccee--eEEECCCCCeEE
Confidence            77777  777788887 899999999998876544    799999999776777777888887544  455555677888


Q ss_pred             EecCCCCeEEEEE-cCCcceEEEe---ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC---------
Q 015198          191 CPGLQRGQVRIEH-FGLNMIKLIN---AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR---------  257 (411)
Q Consensus       191 ~~g~~dg~i~i~~-~~~~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~---------  257 (411)
                      ++| .||++.+++ .+++.+..+.   +|.+.|.+++|+||++.+++++.|.+ ++|||+.+.+++.++..         
T Consensus       207 t~g-sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~v~dqqv  284 (603)
T KOG0318|consen  207 TAG-SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGSTVEDQQV  284 (603)
T ss_pred             Eec-CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCchhceEE
Confidence            766 799999955 6677788887   89999999999999999999999999 99999987655444311         


Q ss_pred             --------------------------------CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198          258 --------------------------------GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       258 --------------------------------~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                                                      ..|...|+++..++|+.+|++|+.||.|.-|+..++...+
T Consensus       285 G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~  356 (603)
T KOG0318|consen  285 GCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR  356 (603)
T ss_pred             EEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence                                            1277899999999999999999999999999999987653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=9.5e-31  Score=222.28  Aligned_cols=288  Identities=12%  Similarity=0.200  Sum_probs=225.1

Q ss_pred             CCCCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCC
Q 015198           31 SFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS  109 (411)
Q Consensus        31 ~~~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  109 (411)
                      .+.+...+........|+|+.+.  ...+++|. |++|+|||.+.......  +.+|...+.++.|...  ++++|+.| 
T Consensus       184 r~~~~rinc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~--L~GHtGSVLCLqyd~r--viisGSSD-  256 (499)
T KOG0281|consen  184 RHLLQRINCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKI--LTGHTGSVLCLQYDER--VIVSGSSD-  256 (499)
T ss_pred             ceeeeeecCCcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHh--hhcCCCcEEeeeccce--EEEecCCC-
Confidence            34455556667788899999985  55788999 99999999987554333  4488999999988765  88899988 


Q ss_pred             CCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCce---eeEEEeccCCCcceEEEccCC
Q 015198          110 QYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK---LLHQIETLANLRGLCCLSHHS  184 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~  184 (411)
                          .+|++||+++|+++.++- |...|..+.|+..-...+ .|.++.+||+....   +.+.+.+|...+.++.+  +.
T Consensus       257 ----sTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~  330 (499)
T KOG0281|consen  257 ----STVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD  330 (499)
T ss_pred             ----ceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--cc
Confidence                999999999999999976 899999999997766555 89999999996543   34556777765555444  33


Q ss_pred             CceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc
Q 015198          185 STSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE  263 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~  263 (411)
                        ++++ +++.|.+|++|+... ..++.+.+|...|.|+.+  .|+++++|+.|.+ |++||+..|.++..+++  |+.-
T Consensus       331 --kyIV-sASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeG--HEeL  402 (499)
T KOG0281|consen  331 --KYIV-SASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEEL  402 (499)
T ss_pred             --ceEE-EecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhc--hHHh
Confidence              3555 467899999998764 778899999999999887  7899999999999 99999999999999999  8889


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccC
Q 015198          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP  343 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (411)
                      |.++.|.  .+.+++|+.||+|+|||+..+...+......          |.                            
T Consensus       403 vRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~----------Cl----------------------------  442 (499)
T KOG0281|consen  403 VRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTL----------CL----------------------------  442 (499)
T ss_pred             hhheeec--CceeeeccccceEEEEecccccCCcccccch----------HH----------------------------
Confidence            9999994  5789999999999999999987543211110          00                            


Q ss_pred             cccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          344 KYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                               .+.--+.+.+....|.. -+|++.+.|..+.||+|..
T Consensus       443 ---------~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  443 ---------RTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFLN  478 (499)
T ss_pred             ---------HhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcCC
Confidence                     00001123445556633 7899999999999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=3.5e-29  Score=233.69  Aligned_cols=243  Identities=14%  Similarity=0.175  Sum_probs=207.8

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc-------------------------------EEEEE-
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-------------------------------CIGEF-  130 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~-------------------------------~~~~~-  130 (411)
                      ++.....+.+..|+++...+|.|-.|     ..|++|.+...+                               ...++ 
T Consensus       374 ~~nt~~~v~ca~fSddssmlA~Gf~d-----S~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~  448 (707)
T KOG0263|consen  374 FHNTYQGVTCAEFSDDSSMLACGFVD-----SSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY  448 (707)
T ss_pred             EEEcCCcceeEeecCCcchhhccccc-----cEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence            34556667788899999888888777     999999866211                               12222 


Q ss_pred             eecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-C
Q 015198          131 AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-L  206 (411)
Q Consensus       131 ~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~  206 (411)
                      .|.++|....|+|+.++++   .|+++++|.+.+..++..+++|..|++.+.|+  |.|.++|+ ++.|++-++|... .
T Consensus       449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~--P~GyYFat-as~D~tArLWs~d~~  525 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA--PRGYYFAT-ASHDQTARLWSTDHN  525 (707)
T ss_pred             cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec--CCceEEEe-cCCCceeeeeecccC
Confidence            3889999999999999998   79999999999999999999999988888876  55778876 6799999999876 4


Q ss_pred             cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEE
Q 015198          207 NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVH  286 (411)
Q Consensus       207 ~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~  286 (411)
                      .+++.+.+|-+.|.|+.|+|+..|+++||.|.+ ||+||+.+|..++.|.+  |.++|.+++|||+|++|++|+.||.|+
T Consensus       526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~LaSg~ed~~I~  602 (707)
T KOG0263|consen  526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLASGDEDGLIK  602 (707)
T ss_pred             CchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEeecccCCcEE
Confidence            778889999999999999999999999999999 99999999999999998  999999999999999999999999999


Q ss_pred             EEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEE
Q 015198          287 IFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAA  366 (411)
Q Consensus       287 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (411)
                      +||+.+++...+.                                                        +-+.+.++.+.
T Consensus       603 iWDl~~~~~v~~l--------------------------------------------------------~~Ht~ti~Sls  626 (707)
T KOG0263|consen  603 IWDLANGSLVKQL--------------------------------------------------------KGHTGTIYSLS  626 (707)
T ss_pred             EEEcCCCcchhhh--------------------------------------------------------hcccCceeEEE
Confidence            9999998865322                                                        22246888999


Q ss_pred             EccC-CEEEEEEeCCcEEEEEEecCCC
Q 015198          367 FGSQ-NTVVIVSMDGSFYRCSFDPVHG  392 (411)
Q Consensus       367 ~~~~-~~~~~~~~dg~~~~~~~~~~~~  392 (411)
                      |+.+ +.|++++.|..|.+|.+....+
T Consensus       627 FS~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  627 FSRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EecCCCEEEecCCCCeEEEEEchhhcc
Confidence            9998 7788888899999998886443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.5e-29  Score=232.53  Aligned_cols=285  Identities=19%  Similarity=0.248  Sum_probs=213.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe--EEEEecCCCCCCCCCeEEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI--LALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~~~d~~~~d~~i~v  118 (411)
                      .|++||.-++|+|.+.+|++|+ |+.++|||+....  ....|++++..+..+.|+|+.  ..++++..|     +.+++
T Consensus       103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~--~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D-----~~v~v  175 (775)
T KOG0319|consen  103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY--CTHSFKGHGGVVSSLLFHPHWNRWLLASGATD-----GTVRV  175 (775)
T ss_pred             ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE--EEEEecCCCceEEEEEeCCccchhheeecCCC-----ceEEE
Confidence            4999999999999999999999 9999999998633  445577889999999999865  457888877     99999


Q ss_pred             EECCCCcE-EEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce------------------------------
Q 015198          119 WDDHQSRC-IGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK------------------------------  163 (411)
Q Consensus       119 wd~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~------------------------------  163 (411)
                      ||+.+... +..+. |.+.|+++.+.+|+..++   .|..+.+||+.+.+                              
T Consensus       176 wnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T  255 (775)
T KOG0319|consen  176 WNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT  255 (775)
T ss_pred             EEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence            99875443 44444 666666666666653333   34444444431100                              


Q ss_pred             --------------------------------------------------------------------------------
Q 015198          164 --------------------------------------------------------------------------------  163 (411)
Q Consensus       164 --------------------------------------------------------------------------------  163 (411)
                                                                                                      
T Consensus       256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e  335 (775)
T KOG0319|consen  256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE  335 (775)
T ss_pred             ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------eeEEEeccCCCcc
Q 015198          164 -------------------------------------------------------------------LLHQIETLANLRG  176 (411)
Q Consensus       164 -------------------------------------------------------------------~~~~~~~~~~~~~  176 (411)
                                                                                         ++....+|.+.+.
T Consensus       336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg  415 (775)
T KOG0319|consen  336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG  415 (775)
T ss_pred             cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence                                                                               1111122222222


Q ss_pred             eEEEccCCCceEEEEecCCCCeEEEEEcCCcc------e----EEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM------I----KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~------~----~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (411)
                      .++++.  .+.-++++++.|+++++|......      +    .....|...|++++++|+.+++|+||.|.+ .+||++
T Consensus       416 ava~~~--~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt-aKiW~l  492 (775)
T KOG0319|consen  416 AVAGSK--LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT-AKIWDL  492 (775)
T ss_pred             eeeecc--cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc-eeeecc
Confidence            222211  122233457899999999887611      1    122479999999999999999999999999 999999


Q ss_pred             CCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCC
Q 015198          247 VDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPS  326 (411)
Q Consensus       247 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (411)
                      +.+..+.++.+  |...|+++.|+|..+.|++++.|++|+||.+++..+.++.++|.                       
T Consensus       493 e~~~l~~vLsG--H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~-----------------------  547 (775)
T KOG0319|consen  493 EQLRLLGVLSG--HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT-----------------------  547 (775)
T ss_pred             cCceEEEEeeC--CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc-----------------------
Confidence            99999999999  89999999999999999999999999999999999998766662                       


Q ss_pred             CCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCCCCcEEE
Q 015198          327 TGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQ  397 (411)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~~~~~  397 (411)
                                                       ..+-.+.|-.+ .+|+++|+||.+.+|++..   +||.+
T Consensus       548 ---------------------------------~aVlra~F~~~~~qliS~~adGliKlWnikt---~eC~~  583 (775)
T KOG0319|consen  548 ---------------------------------SAVLRASFIRNGKQLISAGADGLIKLWNIKT---NECEM  583 (775)
T ss_pred             ---------------------------------ceeEeeeeeeCCcEEEeccCCCcEEEEeccc---hhhhh
Confidence                                             24556777665 9999999999999999985   56653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=1.6e-30  Score=225.17  Aligned_cols=244  Identities=14%  Similarity=0.171  Sum_probs=209.5

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      .+..|+.+|.++.|+++|.++++|+ +|.|++|+.+-... .... ..+...|.+++|+|+...++++++|     ++|+
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~-ahh~eaIRdlafSpnDskF~t~SdD-----g~ik  205 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQ-AHHAEAIRDLAFSPNDSKFLTCSDD-----GTIK  205 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHhh-HhhhhhhheeccCCCCceeEEecCC-----CeEE
Confidence            3568999999999999999999999 99999999764222 2111 1344789999999999999999998     9999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      |||....+....+. |.-.|.++.|+|..-+++   .|+.|++||.+++.++.++..|.+  .++.+.+++++.+|++ +
T Consensus       206 iWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn--tVl~~~f~~n~N~Llt-~  282 (464)
T KOG0284|consen  206 IWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN--TVLAVKFNPNGNWLLT-G  282 (464)
T ss_pred             EEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc--eEEEEEEcCCCCeeEE-c
Confidence            99998888877777 899999999999888887   788999999999999999988887  6777777777788875 7


Q ss_pred             CCCCeEEEEEcC-CcceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198          194 LQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       194 ~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (411)
                      +.|..+++++.+ .+.+..+++|+..++++.|+|-. .+|.+|+.||. |..|.+...+++..+... |...|++++|+|
T Consensus       283 skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~A-Hd~~iwsl~~hP  360 (464)
T KOG0284|consen  283 SKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPPA-HDGEIWSLAYHP  360 (464)
T ss_pred             cCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCcc-cccceeeeeccc
Confidence            799999997766 78888999999999999999954 58889999999 999999866666666544 889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccccc
Q 015198          272 NVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       272 dg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      -|.+|++|+.|.++++|.-....
T Consensus       361 lGhil~tgsnd~t~rfw~r~rp~  383 (464)
T KOG0284|consen  361 LGHILATGSNDRTVRFWTRNRPG  383 (464)
T ss_pred             cceeEeecCCCcceeeeccCCCC
Confidence            99999999999999999765443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1.9e-28  Score=209.54  Aligned_cols=245  Identities=18%  Similarity=0.197  Sum_probs=206.7

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      .+..+.+|++.|+++.|+.||.+||+|. +|.|+||...++.......  .....+.-+.|+|...+++.|+.|     |
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~--~e~~dieWl~WHp~a~illAG~~D-----G  170 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD--QEVEDIEWLKWHPRAHILLAGSTD-----G  170 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee--cccCceEEEEecccccEEEeecCC-----C
Confidence            5567899999999999999999999999 9999999999866655542  455567778899999999999998     9


Q ss_pred             eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCC-cc-------------
Q 015198          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANL-RG-------------  176 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~-~~-------------  176 (411)
                      .+.+|.+.++...+.+. |..++++=.|.|+|+.++   .||+|++|++.+++++..+....+. ..             
T Consensus       171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~  250 (399)
T KOG0296|consen  171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK  250 (399)
T ss_pred             cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence            99999999987777777 899999999999999988   7999999999999988877621100 00             


Q ss_pred             -----------------eEEEc--------------------cCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccce
Q 015198          177 -----------------LCCLS--------------------HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHI  219 (411)
Q Consensus       177 -----------------~~~~~--------------------~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i  219 (411)
                                       +.+..                    +.....-|+++|+-||+|.||+.....++.+-.|..+|
T Consensus       251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V  330 (399)
T KOG0296|consen  251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGV  330 (399)
T ss_pred             ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCce
Confidence                             00000                    11111224456889999999999998888888999999


Q ss_pred             eEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          220 ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       220 ~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      ..+.|-+ ..+|++++.+|. |+.||.++|+++.++.+  |...|.+++++|+++++++++.|++.+||++.
T Consensus       331 ~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  331 TKLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEEcC-cchheeeccCce-EEeeeccccceEEEEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999998 779999999999 99999999999999999  88999999999999999999999999999875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=204.77  Aligned_cols=280  Identities=13%  Similarity=0.079  Sum_probs=225.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      .....|.+.|++++.+|+.+++++|+ |..-.||++.++.....  +.+|...++++.|+.++.+|++|+.+     |.|
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdms-----G~v  130 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMS-----GKV  130 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCC-----ccE
Confidence            34678999999999999999999999 99999999998775554  44999999999999999999999998     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      +||+..++.....+. .-..|.-+.|+|.+.+++   .||.+.+|.+.++...+.+.+|..+...-.|.++  |+.++ +
T Consensus       131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd--GKr~~-t  207 (399)
T KOG0296|consen  131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD--GKRIL-T  207 (399)
T ss_pred             EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC--CceEE-E
Confidence            999999999888886 677899999999888887   7999999999998888999999887776666666  55665 4


Q ss_pred             cCCCCeEEEEEcCC-cceEEEe---------------------------------------------------cccccee
Q 015198          193 GLQRGQVRIEHFGL-NMIKLIN---------------------------------------------------AHDSHIA  220 (411)
Q Consensus       193 g~~dg~i~i~~~~~-~~~~~~~---------------------------------------------------~~~~~i~  220 (411)
                      |+.||+|++|+... .++..+.                                                   .+...+.
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e  287 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE  287 (399)
T ss_pred             EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence            78999999998653 2221111                                                   1122222


Q ss_pred             EEE---ecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198          221 CFT---LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       221 ~l~---~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      ++.   ++..-.+.|+|+.||+ |.|||+...+..+.+.   |...|..+.|-+ ..+|++++.+|.|+.||.++|+...
T Consensus       288 sve~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~  362 (399)
T KOG0296|consen  288 SVESIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKF  362 (399)
T ss_pred             hhhhcccccccchhhcccccce-EEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccceEE
Confidence            333   3334457789999999 9999998888776665   788899999998 6889999999999999999999876


Q ss_pred             CCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEE
Q 015198          298 DSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIV  376 (411)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  376 (411)
                      +...|+                                                        ..+...+++++ +.++++
T Consensus       363 ~y~GH~--------------------------------------------------------~~Il~f~ls~~~~~vvT~  386 (399)
T KOG0296|consen  363 TYTGHQ--------------------------------------------------------MGILDFALSPQKRLVVTV  386 (399)
T ss_pred             EEecCc--------------------------------------------------------hheeEEEEcCCCcEEEEe
Confidence            555551                                                        13445678888 778888


Q ss_pred             EeCCcEEEEEEe
Q 015198          377 SMDGSFYRCSFD  388 (411)
Q Consensus       377 ~~dg~~~~~~~~  388 (411)
                      +.|+...||...
T Consensus       387 s~D~~a~VF~v~  398 (399)
T KOG0296|consen  387 SDDNTALVFEVP  398 (399)
T ss_pred             cCCCeEEEEecC
Confidence            889999998653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=4.2e-28  Score=224.49  Aligned_cols=282  Identities=13%  Similarity=0.145  Sum_probs=228.7

Q ss_pred             cccCCCCCCeEEEEEc-CCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           38 AFSDVDEIELISVSWN-QDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s-~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      .++-|..+.|..++|- |+.++||+++ .+.+++|++.+....   -+++|...+.++....++.++++++.|     ++
T Consensus       317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD-----~s  388 (775)
T KOG0319|consen  317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKD-----KS  388 (775)
T ss_pred             hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCC-----ce
Confidence            3456788899999984 7789999999 999999988775443   245888889998866677899999998     99


Q ss_pred             EEEEECCCCcE----EEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCcee-----e----EEEeccCCCcce
Q 015198          116 VIIWDDHQSRC----IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKL-----L----HQIETLANLRGL  177 (411)
Q Consensus       116 i~vwd~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~-----~----~~~~~~~~~~~~  177 (411)
                      +++|.++++..    +.... |...|.+++++..+.-++    .|.++++|++...+.     .    .....|...+.+
T Consensus       389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~  468 (775)
T KOG0319|consen  389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC  468 (775)
T ss_pred             EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence            99998755432    23333 899999999987654333    799999999965211     1    122457777788


Q ss_pred             EEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198          178 CCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (411)
                      ++++++.  . |+++|+.|.+.+||+.. ......+.+|...|.++.|+|..+.++++|.|++ |+||.+.+..++++|.
T Consensus       469 Vaia~nd--k-LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~e  544 (775)
T KOG0319|consen  469 VAIAPND--K-LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFE  544 (775)
T ss_pred             eEecCCC--c-eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeec
Confidence            8887765  3 45569999999998876 4567788999999999999999999999999999 9999999999999999


Q ss_pred             CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccc
Q 015198          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLS  336 (411)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (411)
                      +  |...|..+.|-.+|..|++++.||-|++|+++++++...+..|++                                
T Consensus       545 G--H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D--------------------------------  590 (775)
T KOG0319|consen  545 G--HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND--------------------------------  590 (775)
T ss_pred             C--ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc--------------------------------
Confidence            9  899999999999999999999999999999999999986666633                                


Q ss_pred             ccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          337 FMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                              -+...+-++. +.+++++.||.+..|.-..
T Consensus       591 ------------------------rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  591 ------------------------RVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             ------------------------eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence                                    2333445555 7889999999999996553

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.6e-27  Score=227.04  Aligned_cols=246  Identities=16%  Similarity=0.252  Sum_probs=209.4

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      +...+.+|...|+.++|+|+++++++++ |++|+|||+..... ..+.+.+|...+.++.|++++..+++|+.|     +
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~-~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D-----~  268 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR-NLKTLKGHSTYVTSVAFSPDGNLLVSGSDD-----G  268 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe-EEEEecCCCCceEEEEecCCCCEEEEecCC-----C
Confidence            4455689999999999999999999999 99999999944333 334466999999999999999999999998     9


Q ss_pred             eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce--eeEEEeccCCCcceEEEccCCCceE
Q 015198          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                      +|+|||+++++++..+. |...|.+++|++++.+++   .|+.|++||+.++.  ++..+..+.....+..+.+++++.+
T Consensus       269 tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~  348 (456)
T KOG0266|consen  269 TVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY  348 (456)
T ss_pred             cEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence            99999999999999999 999999999999999998   79999999999998  5667766655423445555666777


Q ss_pred             EEEecCCCCeEEEEEcC-CcceEEEeccccc---eeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC-Ccc
Q 015198          189 LACPGLQRGQVRIEHFG-LNMIKLINAHDSH---IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-RAE  263 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~---i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-~~~  263 (411)
                      ++. +..|+.+++|+.. ...+..+.+|...   +.+..+++.+.++++|+.|+. |++||+.++..+..+.+  | ...
T Consensus       349 ll~-~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~l~~--h~~~~  424 (456)
T KOG0266|consen  349 LLS-ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQRLEG--HSKAA  424 (456)
T ss_pred             EEE-ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhhhcC--CCCCc
Confidence            776 6689999999987 6777888888764   444556789999999999999 99999999999988888  6 789


Q ss_pred             eEEEEeCCCCCEEEEEe--CCCcEEEEEcc
Q 015198          264 IYSIALSPNVQWLAVAS--DKGTVHIFSLR  291 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s--~dg~I~vwd~~  291 (411)
                      +..+.++|...++++++  .|+.|++|..+
T Consensus       425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            99999999999999988  78899999764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5.8e-26  Score=191.46  Aligned_cols=247  Identities=12%  Similarity=0.175  Sum_probs=198.6

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ......+.|+++.|+++|.+|++++ |..++|||...+........+.......++...++..+..+...|     .+|+
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d-----~tIr   83 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED-----DTIR   83 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC-----CceE
Confidence            3445678999999999999999988 899999999987776666555556666677666666666665555     8999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      ..++.+++.++-+. |...|.+++.+|-+..++   .|++|++||++..++...+.....  .+  .+++|+|.++|+ +
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi--~AfDp~GLifA~-~  158 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PI--AAFDPEGLIFAL-A  158 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cc--eeECCCCcEEEE-e
Confidence            99999999999998 999999999999776666   799999999998888777765544  33  355667777766 4


Q ss_pred             CCCCeEEEEEcCC---cceEEEe---ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCc-ceEE
Q 015198          194 LQRGQVRIEHFGL---NMIKLIN---AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA-EIYS  266 (411)
Q Consensus       194 ~~dg~i~i~~~~~---~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~-~v~~  266 (411)
                      ...+.|++++.+.   .+...+.   +.....+.|.|+|||++|+.+...+. +++.|.-+|..+.++....... --..
T Consensus       159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~  237 (311)
T KOG1446|consen  159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLS  237 (311)
T ss_pred             cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCccee
Confidence            4455899977653   4545543   34678899999999999999999999 9999999999999888743333 2257


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          267 IALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       267 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      ..|+||++++++|+.||+|++|+++++.+.
T Consensus       238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKV  267 (311)
T ss_pred             EEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence            789999999999999999999999988764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1.1e-27  Score=213.32  Aligned_cols=284  Identities=14%  Similarity=0.185  Sum_probs=207.1

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEe--ec-CCCCEEEEEEeccCCe--EEEEecCCCCCCC
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRR--DL-KSGGFRIVEMLFRCNI--LALVGAGDNSQYP  112 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~--~~l~s~~~d~~~~  112 (411)
                      .+.+|...|.++++.|.|..|++|+ |-.|++||+.........  .+ ......+..+.|++.+  .++++|+      
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~------  235 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS------  235 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC------
Confidence            3567888999999999999999999 999999999754332211  11 2233445566666654  4444444      


Q ss_pred             CCeEEEEECCCCcEEEEE----------e----ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCc-eeeEEEec---
Q 015198          113 PTKVIIWDDHQSRCIGEF----------A----FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDL-KLLHQIET---  170 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~----------~----~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~-~~~~~~~~---  170 (411)
                       ...+|+| +.|..+.++          .    |...+++.+|+|+.+-.+    .||++++||+... +.++.+..   
T Consensus       236 -aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  236 -AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             -cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence             6888998 444333222          1    667889999999765443    7999999999654 34444432   


Q ss_pred             cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc----eEEEecccc--ceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198          171 LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINAHDS--HIACFTLTLDGLLLATASTRGTLIRIF  244 (411)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~----~~~~~~~~~--~i~~l~~sp~g~~l~s~s~dg~~I~vw  244 (411)
                      ....+.+...+|++++..||+ |..||.|.+|+.....    ...-.+|..  .|++|.|+++|++|++-+.|+. +++|
T Consensus       314 ~g~Rv~~tsC~~nrdg~~iAa-gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvW  391 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKLIAA-GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVW  391 (641)
T ss_pred             CCcccCceeeecCCCcchhhh-cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeee
Confidence            233445556667777778765 7799999999975532    233367876  8999999999999999999999 9999


Q ss_pred             ECCCCc-eEEEEeCCCCCcceEEEEeCCCCCEEEEEeC------CCcEEEEEccccccCCCCCCCCCCCCcccccccCCC
Q 015198          245 NTVDGT-RLQEVRRGVDRAEIYSIALSPNVQWLAVASD------KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSS  317 (411)
Q Consensus       245 d~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (411)
                      |++..+ ++....+-...-+-+.++|||+.++|++|+.      .|++.+||..+-+..                     
T Consensus       392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v---------------------  450 (641)
T KOG0772|consen  392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV---------------------  450 (641)
T ss_pred             eccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE---------------------
Confidence            998754 5555554334446788999999999999874      467888887776532                     


Q ss_pred             CCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          318 SFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                                         .++.++...+..|.|+|. |+|++++.||.+++| +++
T Consensus       451 -----------------------------------~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy-Ydp  487 (641)
T KOG0772|consen  451 -----------------------------------YKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY-YDP  487 (641)
T ss_pred             -----------------------------------EEecCCCceEEEEeecchhhheeeecCCCceEEE-ECc
Confidence                                               355566667888999999 999999999999999 555

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=3e-27  Score=201.72  Aligned_cols=239  Identities=13%  Similarity=0.148  Sum_probs=205.1

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEE
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYS  158 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd  158 (411)
                      +.+|...+.++++.|...++++++.|     ++|+|||+.+|+...++. |...|..+++++-..+++   .|+.|+.||
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            46888999999999999999999998     999999999999999998 999999999999998888   799999999


Q ss_pred             cCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCC
Q 015198          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTR  237 (411)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d  237 (411)
                      ++..+.++.+.+|-..+.++.+.|.-  ..|+ +|+.|.++++|+.+. ..+..+.+|..+|..+.+.|-...+++|+.|
T Consensus       222 Le~nkvIR~YhGHlS~V~~L~lhPTl--dvl~-t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D  298 (460)
T KOG0285|consen  222 LEYNKVIRHYHGHLSGVYCLDLHPTL--DVLV-TGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD  298 (460)
T ss_pred             chhhhhHHHhccccceeEEEeccccc--eeEE-ecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence            99999999999998855555555443  4555 577999999998776 4688899999999999999888889999999


Q ss_pred             CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCC
Q 015198          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSS  317 (411)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (411)
                      ++ |++||++.|+...++..  |...|.+++.+|....+|+++.|. |+-|++..|.....++.|               
T Consensus       299 ~t-vrlWDl~agkt~~tlt~--hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh---------------  359 (460)
T KOG0285|consen  299 ST-VRLWDLRAGKTMITLTH--HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGH---------------  359 (460)
T ss_pred             ce-EEEeeeccCceeEeeec--ccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccc---------------
Confidence            99 99999999999988887  888999999999999999999887 999999999866433333               


Q ss_pred             CCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          318 SFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                                                               ......++...++.+++|+.+|.+..|....
T Consensus       360 -----------------------------------------~~iintl~~nsD~v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  360 -----------------------------------------NAIINTLSVNSDGVLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             -----------------------------------------cceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence                                                     1234455566668888888889988887765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=4e-26  Score=204.74  Aligned_cols=239  Identities=18%  Similarity=0.268  Sum_probs=201.8

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      .....|...+..+.|+|++++|++++ ++.|++|++...+.....  ..+...+.++.|.+++.++++++.+     +.|
T Consensus        45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i  117 (289)
T cd00200          45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL--TGHTSYVSSVAFSPDGRILSSSSRD-----KTI  117 (289)
T ss_pred             EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE--eccCCcEEEEEEcCCCCEEEEecCC-----CeE
Confidence            34667889999999999999999999 999999999875444333  3566678889999988888888766     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--E-cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      .+||+.+++.+..+. |...+.++.|+|++.+++  . ++.|++||+++++.+..+..+...+  .++.+++++..++++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~  195 (289)
T cd00200         118 KVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV--NSVAFSPDGEKLLSS  195 (289)
T ss_pred             EEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcccc--ceEEECCCcCEEEEe
Confidence            999999888888887 888999999999887777  3 9999999999888888888776544  455555666566664


Q ss_pred             cCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198          193 GLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       193 g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (411)
                      + .++.|++|+.. .+.+..+..|...+.+++|+|++.++++++.++. |++||+.+++.+..+..  |...|.+++|++
T Consensus       196 ~-~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~  271 (289)
T cd00200         196 S-SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWSP  271 (289)
T ss_pred             c-CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEECC
Confidence            4 59999999877 4566666688999999999999999999888999 99999999988888886  778999999999


Q ss_pred             CCCEEEEEeCCCcEEEEE
Q 015198          272 NVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       272 dg~~l~s~s~dg~I~vwd  289 (411)
                      ++++|++++.||.|++|+
T Consensus       272 ~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         272 DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCEEEEecCCCeEEecC
Confidence            999999999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.9e-26  Score=213.95  Aligned_cols=244  Identities=16%  Similarity=0.285  Sum_probs=204.4

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      +.....+|+++|..+.|+|++.++++|+ |-.|+||+.+..+.++.  +.+|-..+..+.|++..-+++++++|     .
T Consensus        43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft--L~GHlDYVRt~~FHheyPWIlSASDD-----Q  115 (1202)
T KOG0292|consen   43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT--LLGHLDYVRTVFFHHEYPWILSASDD-----Q  115 (1202)
T ss_pred             HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh--hccccceeEEeeccCCCceEEEccCC-----C
Confidence            3456789999999999999999999999 99999999997665554  44899999999999999999999998     9


Q ss_pred             eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce---------------------------
Q 015198          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK---------------------------  163 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~---------------------------  163 (411)
                      +|+||+..+++++..+. |..-|.|..|+|...+++   .|.+|++||+...+                           
T Consensus       116 TIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~D  195 (1202)
T KOG0292|consen  116 TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTD  195 (1202)
T ss_pred             eEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcC
Confidence            99999999999999998 999999999999777776   79999999983210                           


Q ss_pred             --eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc---eEEEeccccceeEEEecCCCCEEEEEcCCC
Q 015198          164 --LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM---IKLINAHDSHIACFTLTLDGLLLATASTRG  238 (411)
Q Consensus       164 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg  238 (411)
                        ..+.+++|...+.-++|.+  ...+|+ +|++|..|++|..+...   +.+..+|...|.++-|+|...++++.++|+
T Consensus       196 aVVK~VLEGHDRGVNwaAfhp--TlpliV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk  272 (1202)
T KOG0292|consen  196 AVVKHVLEGHDRGVNWAAFHP--TLPLIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK  272 (1202)
T ss_pred             eeeeeeecccccccceEEecC--CcceEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCc
Confidence              1234466766555555544  444554 68899999999887654   445679999999999999999999999999


Q ss_pred             eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      . |+|||+...+.+++++.  .....+.++-+|..+++++| .|+-+.||.++.-
T Consensus       273 s-irVwDm~kRt~v~tfrr--endRFW~laahP~lNLfAAg-HDsGm~VFkleRE  323 (1202)
T KOG0292|consen  273 S-IRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE  323 (1202)
T ss_pred             c-EEEEecccccceeeeec--cCCeEEEEEecCCcceeeee-cCCceEEEEEccc
Confidence            9 99999999999999987  66689999999999977765 5555899998743

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.1e-26  Score=209.53  Aligned_cols=244  Identities=14%  Similarity=0.207  Sum_probs=212.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....-.+-+|.+..|-+..+++++|+ |..|+||+.++.+++..  |+.|...+.++..+|..-++.++++|     -+|
T Consensus        49 ksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~--FeAH~DyIR~iavHPt~P~vLtsSDD-----m~i  121 (794)
T KOG0276|consen   49 KSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT--FEAHSDYIRSIAVHPTLPYVLTSSDD-----MTI  121 (794)
T ss_pred             eeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE--eeccccceeeeeecCCCCeEEecCCc-----cEE
Confidence            34556678899999999999999999 99999999999887655  45899999999999999999999998     999


Q ss_pred             EEEECCCC-cEEEEEe-ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          117 IIWDDHQS-RCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       117 ~vwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      ++||.+.+ .+.+++. |..-|.+++|+|... .++   .|++|++|.+....+..++++|...+.++++-+-++..+|+
T Consensus       122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI  201 (794)
T KOG0276|consen  122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI  201 (794)
T ss_pred             EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence            99997765 7778888 999999999999643 333   79999999999999999999999999999999999989987


Q ss_pred             EecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198          191 CPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (411)
                      + |+.|.+|+||+++. .+++++.+|...|..+.|+|.-.++++|++||+ +|||+..+-+...++.-  .-..+++++-
T Consensus       202 s-gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tLn~--gleRvW~I~~  277 (794)
T KOG0276|consen  202 S-GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTLNY--GLERVWCIAA  277 (794)
T ss_pred             e-cCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhhhc--CCceEEEEee
Confidence            5 78999999999876 678999999999999999999999999999999 99999888877777765  4458999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcccc
Q 015198          270 SPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       270 spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      .+.+..++.|.+.|.|. .++-..
T Consensus       278 ~k~~~~i~vG~Deg~i~-v~lgre  300 (794)
T KOG0276|consen  278 HKGDGKIAVGFDEGSVT-VKLGRE  300 (794)
T ss_pred             cCCCCeEEEeccCCcEE-EEccCC
Confidence            99888888888888544 444433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.3e-27  Score=220.91  Aligned_cols=242  Identities=16%  Similarity=0.191  Sum_probs=189.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC----------------------------cc--eE-----------
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF----------------------------KE--TF-----------   79 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~----------------------------~~--~~-----------   79 (411)
                      .|.+.|+++.|++||+|||+|+ |+.|+||.+...                            ..  ..           
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            8999999999999999999999 999999987540                            00  00           


Q ss_pred             -----------------EeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEc
Q 015198           80 -----------------RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS  142 (411)
Q Consensus        80 -----------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~  142 (411)
                                       ...+.+|...|+++.|+.++.+|.+ +.|     .+|++|++...+|++.|.|..-|+|++|+
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS-SMD-----KTVRLWh~~~~~CL~~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS-SMD-----KTVRLWHPGRKECLKVFSHNDFVTCVAFN  418 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCCeeEec-ccc-----ccEEeecCCCcceeeEEecCCeeEEEEec
Confidence                             0012578888999999988766554 555     99999999999999999999999999999


Q ss_pred             C-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE-EE--ecc
Q 015198          143 R-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-LI--NAH  215 (411)
Q Consensus       143 ~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-~~--~~~  215 (411)
                      | |.++++   .|+.|+||++...+.+.-...+ .-++.+++.|+  |+..++ |+.+|.+++++..+..+. ..  ..|
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~Pd--Gk~avI-Gt~~G~C~fY~t~~lk~~~~~~I~~~  494 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPD--GKGAVI-GTFNGYCRFYDTEGLKLVSDFHIRLH  494 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccC--CceEEE-EEeccEEEEEEccCCeEEEeeeEeec
Confidence            9 556666   8999999999887776655554 44555555555  555544 889999999877653322 11  111


Q ss_pred             ------ccceeEEEecCCCC-EEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198          216 ------DSHIACFTLTLDGL-LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF  288 (411)
Q Consensus       216 ------~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vw  288 (411)
                            ...|+.+.|.|... .+++.+.|.. |||||.++.+++..|++......-....|+.||++|+++++|..|+||
T Consensus       495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW  573 (712)
T KOG0283|consen  495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW  573 (712)
T ss_pred             cCccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence                  23799999987543 5777788999 999999999999999986555566778999999999999999999999


Q ss_pred             Eccccc
Q 015198          289 SLRVRV  294 (411)
Q Consensus       289 d~~~~~  294 (411)
                      +++...
T Consensus       574 ~~~~~~  579 (712)
T KOG0283|consen  574 KNDSFN  579 (712)
T ss_pred             eCCCCc
Confidence            985544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.6e-26  Score=186.82  Aligned_cols=238  Identities=14%  Similarity=0.166  Sum_probs=199.6

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEE
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYS  158 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd  158 (411)
                      +..+...+..+.|+.++.+.++++.|     .+|++|+...+.+++++. |..+|..++.+.|...++   .|..|.+||
T Consensus        13 l~~~qgaV~avryN~dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             ecccccceEEEEEccCCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            34677788899999999999999988     999999999999999998 999999999999988888   799999999


Q ss_pred             cCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC---cceEEEeccccceeEEEecCCCCEEEEEc
Q 015198          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLDGLLLATAS  235 (411)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~---~~~~~~~~~~~~i~~l~~sp~g~~l~s~s  235 (411)
                      +.+|+.++.+.+|...+.  ++.++.+...+ ++|+.|..+++|+-+.   ++++.+......|.++.++  +..|++|+
T Consensus        88 V~TGkv~Rr~rgH~aqVN--tV~fNeesSVv-~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVN--TVRFNEESSVV-ASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             cccCeeeeecccccceee--EEEecCcceEE-EeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence            999999999999988554  55555555555 4688999999999765   6677777888899998874  56799999


Q ss_pred             CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccC
Q 015198          236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNH  315 (411)
Q Consensus       236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (411)
                      .||+ +|.||++.|......-+    .+|++++|++|++.+++++.|+++++.|-.+|+-.+....|.            
T Consensus       163 ~DGt-vRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk------------  225 (307)
T KOG0316|consen  163 VDGT-VRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK------------  225 (307)
T ss_pred             cCCc-EEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc------------
Confidence            9999 99999999988655544    389999999999999999999999999999999765444440            


Q ss_pred             CCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          316 SSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                                                ....+..|++... ..++.+++||.||+|.|..
T Consensus       226 ------------------------------------------n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  226 ------------------------------------------NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             ------------------------------------------cceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence                                                      0123456778776 6777777899999999986

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=1.9e-26  Score=192.62  Aligned_cols=239  Identities=13%  Similarity=0.126  Sum_probs=200.1

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCCeE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKV  116 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~~i  116 (411)
                      .+.+|.+.|..+.|.+|++.|++++ |.+|+.||+++++...+..  .|...+..+....-+ .++.++++|     +++
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k--~h~~~vNs~~p~rrg~~lv~SgsdD-----~t~  157 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK--GHTSFVNSLDPSRRGPQLVCSGSDD-----GTL  157 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc--cccceeeecCccccCCeEEEecCCC-----ceE
Confidence            3569999999999999999999998 9999999999977665543  555555566554434 566677777     999


Q ss_pred             EEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      ++||+++..+++++..+..++++.|..++..+.   .|+.|++||++....+..+.+|..++..+.+++  ++.++.. -
T Consensus       158 kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~--~gs~lls-n  234 (338)
T KOG0265|consen  158 KLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR--YGSFLLS-N  234 (338)
T ss_pred             EEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEecc--CCCcccc-c
Confidence            999999999999999999999999998876666   799999999999999999999998665555554  5556654 6


Q ss_pred             CCCCeEEEEEcCC-----cceEEEecccc----ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcce
Q 015198          194 LQRGQVRIEHFGL-----NMIKLINAHDS----HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (411)
Q Consensus       194 ~~dg~i~i~~~~~-----~~~~~~~~~~~----~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (411)
                      +.|.++++|+.+.     +++..+.+|..    .....+|+|+++.+.+|+.|.. +++||......+..+.+  |.+.|
T Consensus       235 sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~-vyvwd~~~r~~lyklpG--h~gsv  311 (338)
T KOG0265|consen  235 SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF-VYVWDTTSRRILYKLPG--HYGSV  311 (338)
T ss_pred             cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce-EEEeecccccEEEEcCC--cceeE
Confidence            6899999998764     45777777643    3456789999999999999999 99999988889989988  89999


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198          265 YSIALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                      .+++|+|...+|.+++.|.+|++=.+
T Consensus       312 n~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  312 NEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             EEeeecCCCcEEEEeccCceeEeecc
Confidence            99999999999999999999987443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=3.4e-26  Score=212.19  Aligned_cols=282  Identities=15%  Similarity=0.121  Sum_probs=234.4

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ...+|...|.+++++.+...+++|..+.++||+.++.+.+....    ...+.+..|-|...+++.|...     |.+.+
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~----~~y~l~~~Fvpgd~~Iv~G~k~-----Gel~v  438 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT----CGYILASKFVPGDRYIVLGTKN-----GELQV  438 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec----cccEEEEEecCCCceEEEeccC-----CceEE
Confidence            57899999999999999999999999999999999877665543    2378888999999999998887     99999


Q ss_pred             EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCC-----ceeeEEEecc-----CCCcceEEEccCC
Q 015198          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD-----LKLLHQIETL-----ANLRGLCCLSHHS  184 (411)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~-----~~~~~~~~~~-----~~~~~~~~~~~~~  184 (411)
                      +|+.+...+.+++ |.+.|.+++..||+..++   .|.+|++||+.-     +...+.+..+     .-...+.+++.+|
T Consensus       439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp  518 (888)
T KOG0306|consen  439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP  518 (888)
T ss_pred             EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence            9999999888888 999999999999998877   799999999721     2111112111     1122578888899


Q ss_pred             CceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc
Q 015198          185 STSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE  263 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~  263 (411)
                      ++.+||+ +--|.+|++ +..+.+....+.+|.-||.|+.++||+++++||+.|.+ |+||-+.-|.+-+.+-+  |...
T Consensus       519 dgk~LaV-sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fA--HdDS  594 (888)
T KOG0306|consen  519 DGKLLAV-SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFA--HDDS  594 (888)
T ss_pred             CCcEEEE-EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhc--ccCc
Confidence            9999987 668999999 45556777888999999999999999999999999999 99999999999989888  8889


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccC
Q 015198          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP  343 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (411)
                      |.++.|-|+...+.+++.|+.|+-||-..-+..+.+..|                                         
T Consensus       595 vm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H-----------------------------------------  633 (888)
T KOG0306|consen  595 VMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH-----------------------------------------  633 (888)
T ss_pred             eeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc-----------------------------------------
Confidence            999999999999999999999999998887776554444                                         


Q ss_pred             cccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                     ...+.+.+.+|+ +-+++++.|-++.+|....
T Consensus       634 ---------------~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  634 ---------------HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ---------------hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence                           123445677777 4666666789999998775

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=3.1e-26  Score=210.77  Aligned_cols=278  Identities=14%  Similarity=0.205  Sum_probs=222.9

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEE-EeccC-CeEEEEecCCCCCCCC
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVE-MLFRC-NILALVGAGDNSQYPP  113 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~s~~~d~~~~d  113 (411)
                      ...+.+|...|..+++.+.. ++++++ ||++++|+-...+..-...+.++...+.. ++|.+ +.-.++.|+.|     
T Consensus         7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D-----   80 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD-----   80 (745)
T ss_pred             EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc-----
Confidence            34688999999999987655 677777 99999999765443333334444444444 55553 44457777777     


Q ss_pred             CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      .+|.+|.+....++..+. |+..|.++....++.++.  .|.++++|-.  +++...+.+|...++  ++..-+++.++ 
T Consensus        81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVW--Av~~l~e~~~v-  155 (745)
T KOG0301|consen   81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVW--AVASLPENTYV-  155 (745)
T ss_pred             ceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchhee--eeeecCCCcEE-
Confidence            999999999999999998 999999999999988665  8999999975  466667888887555  44445555333 


Q ss_pred             EecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198          191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (411)
                       +|+.|.+|++|.- ++.++.+.+|...|+.+++-+++. +++++.||. |++|++ +|+.+.+..+  |..-|+++...
T Consensus       156 -TgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~  228 (745)
T KOG0301|consen  156 -TGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMA  228 (745)
T ss_pred             -eccCcceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEec
Confidence             6889999999976 788999999999999999988764 788999999 999998 8999989888  89999999988


Q ss_pred             CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccccc
Q 015198          271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW  350 (411)
Q Consensus       271 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (411)
                      +++..++++++|++++||+..  ++.                                                      
T Consensus       229 ~~~~~Ivs~gEDrtlriW~~~--e~~------------------------------------------------------  252 (745)
T KOG0301|consen  229 LSDGLIVSTGEDRTLRIWKKD--ECV------------------------------------------------------  252 (745)
T ss_pred             CCCCeEEEecCCceEEEeecC--ceE------------------------------------------------------
Confidence            888999999999999999987  322                                                      


Q ss_pred             ceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEecC
Q 015198          351 SFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPV  390 (411)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~  390 (411)
                        +.+.+|.-....+..-.++.|++||+||.|+||..++.
T Consensus       253 --q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  253 --QVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             --EEEecCccceEEEEEeeCCCEEEeccCceEEEEEeccc
Confidence              46778875555555556799999999999999999853

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=5.2e-26  Score=195.63  Aligned_cols=281  Identities=14%  Similarity=0.112  Sum_probs=215.2

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEecc---CCeEEEEecCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR---CNILALVGAGDNSQY  111 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~s~~~d~~~  111 (411)
                      ......-|++.|.++...  ++.+++|+ ||.+++|+... +.....  .+|...+.++.+.   +....+++++.|   
T Consensus        97 ~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~~~~--~Ght~~ik~v~~v~~n~~~~~fvsas~D---  168 (423)
T KOG0313|consen   97 KPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSIKTI--VGHTGPIKSVAWVIKNSSSCLFVSASMD---  168 (423)
T ss_pred             Cccccccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceEEEE--ecCCcceeeeEEEecCCccceEEEecCC---
Confidence            334566799999999988  77999999 99999999875 333333  3777777765554   333468899988   


Q ss_pred             CCCeEEEEECCCCcEEEEE-----eecCceeEEEEcCCeEEEE---EcCeEEEEEcC-----------------------
Q 015198          112 PPTKVIIWDDHQSRCIGEF-----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFV-----------------------  160 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~-----------------------  160 (411)
                        .++++|..+.++.....     .|...|.++...+++..++   .|..|.+|+..                       
T Consensus       169 --qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~  246 (423)
T KOG0313|consen  169 --QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE  246 (423)
T ss_pred             --ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence              99999998877554332     3899999999999999988   79999999931                       


Q ss_pred             --CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCC
Q 015198          161 --DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG  238 (411)
Q Consensus       161 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg  238 (411)
                        +..++-.+.+|..++..+.|...    -.+++++.|.+|+.|+........-......+.++.++|..++|++|+.|.
T Consensus       247 ~~~r~P~vtl~GHt~~Vs~V~w~d~----~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr  322 (423)
T KOG0313|consen  247 GGTRTPLVTLEGHTEPVSSVVWSDA----TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDR  322 (423)
T ss_pred             ccccCceEEecccccceeeEEEcCC----CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCC
Confidence              12345566778876665555552    245678899999999887654444444577899999999999999999999


Q ss_pred             eEEEEEECCCCc---eEEEEeCCCCCcceEEEEeCCCCC-EEEEEeCCCcEEEEEccccc-cCCCCCCCCCCCCcccccc
Q 015198          239 TLIRIFNTVDGT---RLQEVRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRV-VGEDSSSSLSTPSQSTELL  313 (411)
Q Consensus       239 ~~I~vwd~~~~~---~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~-~~~~~~~~~~~~~~~~~~~  313 (411)
                      . |++||.+++.   ..+++.+  |.+.|.++.|+|... +|++++.|+++++||+++.+ ..-++..|           
T Consensus       323 ~-irl~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-----------  388 (423)
T KOG0313|consen  323 H-IRLWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-----------  388 (423)
T ss_pred             c-eeecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-----------
Confidence            9 9999998763   3556777  888999999999654 68899999999999999887 44333333           


Q ss_pred             cCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          314 NHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                                                                   .+-+..+-|.....|++||.|..++|++-.+
T Consensus       389 ---------------------------------------------~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  389 ---------------------------------------------NDKVLSVDWNEGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             ---------------------------------------------CceEEEEeccCCceEEeccCcceEEEecccc
Confidence                                                         2344556687778999999999999997553

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.6e-26  Score=201.94  Aligned_cols=276  Identities=14%  Similarity=0.160  Sum_probs=217.7

Q ss_pred             cCCCCCCeEEEEEcCCCCE-EEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGC-FAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~-la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      .....+.|.+++|+|...+ +|+.+.-.+.||+..+.....  .+..-...+.+..|..||.+++.|+..     |.|+|
T Consensus        22 ~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k--~~srFk~~v~s~~fR~DG~LlaaGD~s-----G~V~v   94 (487)
T KOG0310|consen   22 VHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRK--TFSRFKDVVYSVDFRSDGRLLAAGDES-----GHVKV   94 (487)
T ss_pred             cccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhh--hHHhhccceeEEEeecCCeEEEccCCc-----CcEEE
Confidence            3344568999999997654 677778889999987643322  122455678889999999999999988     99999


Q ss_pred             EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      +|+++...++.+. |..++..+.|+|++..++    .|+.+++||+.+......+.+|..  .+.+.++.|.+..++++|
T Consensus        95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD--YVR~g~~~~~~~hivvtG  172 (487)
T KOG0310|consen   95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD--YVRCGDISPANDHIVVTG  172 (487)
T ss_pred             eccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc--eeEeeccccCCCeEEEec
Confidence            9977766777776 999999999999776665    678899999998887557777877  556666666666777889


Q ss_pred             CCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce-EEEEeCCCCCcceEEEEeCC
Q 015198          194 LQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       194 ~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp  271 (411)
                      +.||.|++|+.+.. ....-..|..+|..+.+-|.|.++++++.. . |+|||+-+|.. +..+..  |...|+|+.+..
T Consensus       173 sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~-vkVWDl~~G~qll~~~~~--H~KtVTcL~l~s  248 (487)
T KOG0310|consen  173 SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-S-VKVWDLTTGGQLLTSMFN--HNKTVTCLRLAS  248 (487)
T ss_pred             CCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-e-EEEEEecCCceehhhhhc--ccceEEEEEeec
Confidence            99999999998765 333335699999999999999999998855 3 99999986654 434433  788999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccc
Q 015198          272 NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWS  351 (411)
Q Consensus       272 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (411)
                      ++..|++++-|+.|++||+.+-+..                                                       
T Consensus       249 ~~~rLlS~sLD~~VKVfd~t~~Kvv-------------------------------------------------------  273 (487)
T KOG0310|consen  249 DSTRLLSGSLDRHVKVFDTTNYKVV-------------------------------------------------------  273 (487)
T ss_pred             CCceEeecccccceEEEEccceEEE-------------------------------------------------------
Confidence            9999999999999999997776633                                                       


Q ss_pred             eEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEE
Q 015198          352 FAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRC  385 (411)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~  385 (411)
                       ..++.|. .+..++.+++ ..+++|-+||.+.+-
T Consensus       274 -~s~~~~~-pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  274 -HSWKYPG-PVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             -Eeeeccc-ceeeEEecCCCceEEEecccceeeee
Confidence             3566665 4555677776 778888889988776

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.5e-25  Score=181.52  Aligned_cols=237  Identities=18%  Similarity=0.217  Sum_probs=195.7

Q ss_pred             eecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEEEEECCC---CcEEEEEe--ecCceeEEEEcCCeEEEE---Ec
Q 015198           81 RDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQ---SRCIGEFA--FRSDVRSVKLSRDRIVVV---LE  151 (411)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~vwd~~~---~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d  151 (411)
                      ..+.+|...+..++|+|. +.+|++++.|     +.|++|+...   -.+...+.  |+..|++++|+|.|++++   .|
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~D-----k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD   82 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTD-----KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD   82 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCC-----ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence            335577778999999998 8999999998     9999999874   34444444  899999999999999999   79


Q ss_pred             CeEEEEEcCC--ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC----cceEEEeccccceeEEEec
Q 015198          152 HKIYVYSFVD--LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL----NMIKLINAHDSHIACFTLT  225 (411)
Q Consensus       152 g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~i~~l~~s  225 (411)
                      .++.||.-..  .+++..+++|.+.+.+++  ++.+|.+||+ ++.|+.|-||....    .+...++.|...|..+.|+
T Consensus        83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Va--ws~sG~~LAT-CSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH  159 (312)
T KOG0645|consen   83 ATVVIWKKEDGEFECVATLEGHENEVKCVA--WSASGNYLAT-CSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH  159 (312)
T ss_pred             ceEEEeecCCCceeEEeeeeccccceeEEE--EcCCCCEEEE-eeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence            9999998653  478899999998655555  5556678876 67999999998763    5678889999999999999


Q ss_pred             CCCCEEEEEcCCCeEEEEEECC---CCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198          226 LDGLLLATASTRGTLIRIFNTV---DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (411)
Q Consensus       226 p~g~~l~s~s~dg~~I~vwd~~---~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~  302 (411)
                      |...+|++++.|++ |++|+-.   .-++.+++.+  |...|++++|++.|..|++++.|++++||...+.-...     
T Consensus       160 Pt~dlL~S~SYDnT-Ik~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~-----  231 (312)
T KOG0645|consen  160 PTEDLLFSCSYDNT-IKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGM-----  231 (312)
T ss_pred             CCcceeEEeccCCe-EEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCceEEEecCCcceEeeeeccCcchh-----
Confidence            99999999999999 9999765   2357888888  77799999999999999999999999999976432110     


Q ss_pred             CCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcE
Q 015198          303 LSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSF  382 (411)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~  382 (411)
                                                                             .....+.++|. ++.|.++|.|+.+
T Consensus       232 -------------------------------------------------------~sr~~Y~v~W~-~~~IaS~ggD~~i  255 (312)
T KOG0645|consen  232 -------------------------------------------------------HSRALYDVPWD-NGVIASGGGDDAI  255 (312)
T ss_pred             -------------------------------------------------------cccceEeeeec-ccceEeccCCCEE
Confidence                                                                   11356678887 7899999999999


Q ss_pred             EEEEEec
Q 015198          383 YRCSFDP  389 (411)
Q Consensus       383 ~~~~~~~  389 (411)
                      .+|.-..
T Consensus       256 ~lf~~s~  262 (312)
T KOG0645|consen  256 RLFKESD  262 (312)
T ss_pred             EEEEecC
Confidence            9997763

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=9.6e-26  Score=214.52  Aligned_cols=273  Identities=15%  Similarity=0.197  Sum_probs=225.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      .+...+.+..|.  ..+++++. +++|++|+..+...+. ..+.+|...+..+.+...+..+++|+.|     .++++||
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~GH~g~V~~l~~~~~~~~lvsgS~D-----~t~rvWd  277 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-TRLVGHFGGVWGLAFPSGGDKLVSGSTD-----KTERVWD  277 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEE-eeccCCCCCceeEEEecCCCEEEEEecC-----CcEEeEe
Confidence            367788999998  45777888 9999999998855444 3366899999999988777888899988     9999999


Q ss_pred             CCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe
Q 015198          121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (411)
Q Consensus       121 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (411)
                      ..+|++...+. |...|.++...+....-. .|.+|++|++.+++.++.+.+|..++..+.+.  .  .+++ +|+.|+.
T Consensus       278 ~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~--~~lv-sgs~d~~  352 (537)
T KOG0274|consen  278 CSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--E--PLLV-SGSYDGT  352 (537)
T ss_pred             cCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--C--CEEE-EEecCce
Confidence            99999999999 999999999887665554 89999999999999999999888866655555  2  3444 5889999


Q ss_pred             EEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-ceEEEEeCCCCCcceEEEEeCCCCCEE
Q 015198          199 VRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNVQWL  276 (411)
Q Consensus       199 i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~l  276 (411)
                      |++|+.. ++++..+.+|..+|.++.+.+. ..+++|+.|+. |++||+++. +++.++..  |...+..+.+  .+++|
T Consensus       353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~~L  426 (537)
T KOG0274|consen  353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDNFL  426 (537)
T ss_pred             EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--cccee
Confidence            9998865 6889999999999999988765 88999999999 999999999 89999988  7777766654  56899


Q ss_pred             EEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEE
Q 015198          277 AVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFH  356 (411)
Q Consensus       277 ~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (411)
                      ++++.|++|++||..++++.+.+...                                                      
T Consensus       427 vs~~aD~~Ik~WD~~~~~~~~~~~~~------------------------------------------------------  452 (537)
T KOG0274|consen  427 VSSSADGTIKLWDAEEGECLRTLEGR------------------------------------------------------  452 (537)
T ss_pred             EeccccccEEEeecccCceeeeeccC------------------------------------------------------
Confidence            99999999999999999987643331                                                      


Q ss_pred             eCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          357 IPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                       +.+.+..+++. +..+++++.||.+++|.+..
T Consensus       453 -~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  453 -HVGGVSALALG-KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             -CcccEEEeecC-cceEEEEecCCeeEEEeccc
Confidence             11233334444 58899999999999998875

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=6.7e-27  Score=203.06  Aligned_cols=248  Identities=16%  Similarity=0.185  Sum_probs=204.5

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      ......|.+.|..+.|-++...|++|+ |..|++|+....+..+...+.+....+..+.|.+++..+++.+.|     +.
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d-----~~  242 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASND-----KN  242 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCC-----Cc
Confidence            345788999999999999999999999 999999999876644555566777789999999999888888887     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      +++|++...+...++. |...|+++.|......++   .|.+|++||+....+.+++...... ..++..     ...++
T Consensus       243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~c-nDI~~~-----~~~~~  316 (459)
T KOG0288|consen  243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQC-NDIVCS-----ISDVI  316 (459)
T ss_pred             eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccc-cceEec-----ceeee
Confidence            9999999999999998 999999999988777555   7999999999988887776543322 222222     23455


Q ss_pred             ecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC--CcceEEEE
Q 015198          192 PGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD--RAEIYSIA  268 (411)
Q Consensus       192 ~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~--~~~v~~l~  268 (411)
                      +|-.|++|++|+.. ..+......+. .|+++..+++|..|.+++.|.. +.+.|+++.+....+.....  ....+.+.
T Consensus       317 SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvv  394 (459)
T KOG0288|consen  317 SGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVV  394 (459)
T ss_pred             ecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeE
Confidence            78899999999955 45566666554 9999999999999999999999 99999999988877764322  23588999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      |||++.|+++|+.||.|+||++.+++...
T Consensus       395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~  423 (459)
T KOG0288|consen  395 FSPDGSYVAAGSADGSVYIWSVFTGKLEK  423 (459)
T ss_pred             ECCCCceeeeccCCCcEEEEEccCceEEE
Confidence            99999999999999999999999998764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=5.9e-25  Score=224.47  Aligned_cols=236  Identities=14%  Similarity=0.225  Sum_probs=191.3

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEE
Q 015198           43 DEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        43 h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      +...|.+++|++. +.+|++++ |+.|+|||+.+.+....  +..|...+.++.|++ ++.++++++.|     +.|++|
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~--~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iW  603 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE--MKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLW  603 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE--ecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEE
Confidence            3567899999875 78899999 99999999987554333  447888899999996 77889999988     999999


Q ss_pred             ECCCCcEEEEEeecCceeEEEEc-CCeEEEE---EcCeEEEEEcCCce-eeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          120 DDHQSRCIGEFAFRSDVRSVKLS-RDRIVVV---LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       120 d~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~---~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      |+.++..+..+.+...+.++.|+ +++..++   .|+.|++||+++.+ .+..+..|...+..+.+.   ++..|++ ++
T Consensus       604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~---~~~~lvs-~s  679 (793)
T PLN00181        604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV---DSSTLVS-SS  679 (793)
T ss_pred             ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe---CCCEEEE-EE
Confidence            99999999888877889999995 4576666   79999999998765 466677777755555553   3345654 66


Q ss_pred             CCCeEEEEEcCC-------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe-----------
Q 015198          195 QRGQVRIEHFGL-------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR-----------  256 (411)
Q Consensus       195 ~dg~i~i~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~-----------  256 (411)
                      .|+.|++|+...       ..+..+.+|...+.+++|+|++.+|++|+.|+. |++|+......+..+.           
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~~  758 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGLE  758 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCcccccc
Confidence            899999998752       567788999999999999999999999999999 9999987665443321           


Q ss_pred             CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                      ...+...|.+++|+|++..|++|+.||.|+||++
T Consensus       759 ~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        759 VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            1124457999999999999999999999999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=4.6e-27  Score=207.96  Aligned_cols=241  Identities=12%  Similarity=0.159  Sum_probs=195.5

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPP  113 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d  113 (411)
                      ......+|..+|..++|+++|..|++++ |+.+++||+++++.....++   .....++.|+|+. ..++.|+.|     
T Consensus       250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~---~~~~~cvkf~pd~~n~fl~G~sd-----  321 (503)
T KOG0282|consen  250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL---DKVPTCVKFHPDNQNIFLVGGSD-----  321 (503)
T ss_pred             eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec---CCCceeeecCCCCCcEEEEecCC-----
Confidence            3455789999999999999999999999 99999999999877666543   3345566677766 556666665     


Q ss_pred             CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      +.|+.||+++++.++++. |-+.|..+.|-+++..++   .|+.++||+.+.+-.++.+... ....+-++..+|++.++
T Consensus       322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~-~~hsmP~~~~~P~~~~~  400 (503)
T KOG0282|consen  322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP-EMHTMPCLTLHPNGKWF  400 (503)
T ss_pred             CcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch-hhccCcceecCCCCCee
Confidence            999999999999999987 899999999999998888   7899999999877665544221 12244556666677788


Q ss_pred             EEecCCCCeEEEEEcC----CcceEEEeccc--cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc
Q 015198          190 ACPGLQRGQVRIEHFG----LNMIKLINAHD--SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE  263 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~----~~~~~~~~~~~--~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~  263 (411)
                      ++ -+.|+.|.++...    ....+.+++|.  +.-..+.|||||.+|++|+.||. +.+||.++.+++..+..  |.++
T Consensus       401 ~a-Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~-v~~wdwkt~kl~~~lka--h~~~  476 (503)
T KOG0282|consen  401 AA-QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK-VNFWDWKTTKLVSKLKA--HDQP  476 (503)
T ss_pred             hh-hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc-EEEeechhhhhhhcccc--CCcc
Confidence            75 5688888885533    34556778885  44567899999999999999999 99999999999999998  8889


Q ss_pred             eEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 015198          264 IYSIALSPNV-QWLAVASDKGTVHIFS  289 (411)
Q Consensus       264 v~~l~~spdg-~~l~s~s~dg~I~vwd  289 (411)
                      +..+.|+|.. ..+|+++.||.|++|+
T Consensus       477 ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  477 CIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEEEecCCCcceeEecccCceeEecC
Confidence            9999999954 4789999999999996

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2.6e-25  Score=214.65  Aligned_cols=291  Identities=16%  Similarity=0.211  Sum_probs=226.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe---CCcEEEEecCCCcc----------eEEeecCCCCEEEEEEeccCCeEEEEecCC
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKE----------TFRRDLKSGGFRIVEMLFRCNILALVGAGD  107 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~---dg~i~iw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  107 (411)
                      ..++..|.++..+|||..+|+|+   |+.++||+.+....          ........|...+.++.|++|+.+|++|++
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            33456799999999999999998   89999999864210          011112477888999999999999999999


Q ss_pred             CCCCCCCeEEEEECCC------------------CcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceee
Q 015198          108 NSQYPPTKVIIWDDHQ------------------SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL  165 (411)
Q Consensus       108 d~~~~d~~i~vwd~~~------------------~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~  165 (411)
                      |     +.|.||+...                  .+++..+. |...|..++|+|++.+++   .|++|.+|+..+.+.+
T Consensus        90 D-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~  164 (942)
T KOG0973|consen   90 D-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL  164 (942)
T ss_pred             c-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence            9     9999999652                  12455555 999999999999999999   7999999999999999


Q ss_pred             EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEecc------ccceeEEEecCCCCEEEEEcC--
Q 015198          166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAH------DSHIACFTLTLDGLLLATAST--  236 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~--  236 (411)
                      ..+.+|...+  -.++++|-|+++|+- +.|++|++|.... ...+.+..+      ...+..+.|+|||++|++...  
T Consensus       165 ~vl~~H~s~V--KGvs~DP~Gky~ASq-sdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n  241 (942)
T KOG0973|consen  165 KVLRGHQSLV--KGVSWDPIGKYFASQ-SDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN  241 (942)
T ss_pred             eeeecccccc--cceEECCccCeeeee-cCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence            9999998844  456667777899874 5899999998443 445555443      345788999999999998643  


Q ss_pred             --CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC-----CC------------EEEEEeCCCcEEEEEccccccCC
Q 015198          237 --RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN-----VQ------------WLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       237 --dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd-----g~------------~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                        -.. +.|.+-.+.+.-..|.+  |.+++.++.|+|.     .+            .+|+|+.|++|.||.....++.-
T Consensus       242 ~~~~~-~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  242 GGKST-IAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             CCcce-eEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence              234 88998877787788888  8889999999971     11            57899999999999986665431


Q ss_pred             CCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEE
Q 015198          298 DSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIV  376 (411)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  376 (411)
                                                                             .-..+-.-.+..++|+++ -.|+++
T Consensus       319 -------------------------------------------------------vi~~lf~~SI~DmsWspdG~~Lfac  343 (942)
T KOG0973|consen  319 -------------------------------------------------------VIHNLFNKSIVDMSWSPDGFSLFAC  343 (942)
T ss_pred             -------------------------------------------------------hhhhhhcCceeeeeEcCCCCeEEEE
Confidence                                                                   001112235677899999 668888


Q ss_pred             EeCCcEEEEEEecCCCCcEEE
Q 015198          377 SMDGSFYRCSFDPVHGGEMLQ  397 (411)
Q Consensus       377 ~~dg~~~~~~~~~~~~~~~~~  397 (411)
                      +.||.|+...|++.+-|+.+-
T Consensus       344 S~DGtV~~i~Fee~ElG~~ls  364 (942)
T KOG0973|consen  344 SLDGTVALIHFEEKELGVALS  364 (942)
T ss_pred             ecCCeEEEEEcchHHhCcccC
Confidence            889999999999877776654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=2.2e-26  Score=194.25  Aligned_cols=248  Identities=13%  Similarity=0.218  Sum_probs=202.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEee------cCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRD------LKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      -+....+.|..|+|||++|++|+ ||-|.+||..+++......      |--+...+.++.|+.+...+++|+.|     
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD-----  284 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD-----  284 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC-----
Confidence            35677889999999999999999 9999999998754322111      12356678999999999999999998     


Q ss_pred             CeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198          114 TKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                      |.|++|.+.+|.|++.+.  |...|+++.|+.|+..+.   .|.++++.-+.+|++++.+.+|...+.-..  +.++|..
T Consensus       285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~--ft~dG~~  362 (508)
T KOG0275|consen  285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT--FTDDGHH  362 (508)
T ss_pred             CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE--EcCCCCe
Confidence            999999999999999997  999999999999998877   799999999999999999999988555444  4556667


Q ss_pred             EEEecCCCCeEEEEEcCC-cceEEEec--cccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCC-CCcc
Q 015198          189 LACPGLQRGQVRIEHFGL-NMIKLINA--HDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGV-DRAE  263 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~-~~~~~~~~--~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-~~~~  263 (411)
                      +++ ++.||+|++|+... .++.+++.  ...+|+.+..-|.. ..++.+...++ |+|.++ .|+.++.+..+. ..+.
T Consensus       363 iis-aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~-qGQvVrsfsSGkREgGd  439 (508)
T KOG0275|consen  363 IIS-ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNM-QGQVVRSFSSGKREGGD  439 (508)
T ss_pred             EEE-ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEec-cceEEeeeccCCccCCc
Confidence            765 66899999998654 56666653  45678888777754 57888888888 999997 788888887543 2345


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCC
Q 015198          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGED  298 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~  298 (411)
                      ..+...+|.|.++++.++|+.++-|.+.+|+-...
T Consensus       440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t  474 (508)
T KOG0275|consen  440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT  474 (508)
T ss_pred             eEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence            66778999999999999999999999999986643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2.4e-25  Score=214.95  Aligned_cols=260  Identities=17%  Similarity=0.164  Sum_probs=211.3

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCC------Cc----------ceEEeecCCCCEEEEEEeccCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP------FK----------ETFRRDLKSGGFRIVEMLFRCN   98 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~   98 (411)
                      ..-+...|.+.|+|+.|+|||++||+|+ |+.|.||....      +.          ......+.+|...+..+.|+|+
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~  140 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD  140 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence            3455788999999999999999999999 99999999872      10          0112334689999999999999


Q ss_pred             eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCC-
Q 015198           99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN-  173 (411)
Q Consensus        99 ~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~-  173 (411)
                      +.++++++.|     ++|.+||..+.+.+..+. |...|..+.|.|-|++++   .|++|++|++.+....+.+..+.. 
T Consensus       141 ~~~lvS~s~D-----nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~  215 (942)
T KOG0973|consen  141 DSLLVSVSLD-----NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE  215 (942)
T ss_pred             ccEEEEeccc-----ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh
Confidence            9999999998     999999999999999988 999999999999999999   799999999887777777755432 


Q ss_pred             ---CcceEEEccCCCceEEEEecCCCC---eEEEEEcCC-cceEEEeccccceeEEEecCC-------------CC----
Q 015198          174 ---LRGLCCLSHHSSTSVLACPGLQRG---QVRIEHFGL-NMIKLINAHDSHIACFTLTLD-------------GL----  229 (411)
Q Consensus       174 ---~~~~~~~~~~~~~~~l~~~g~~dg---~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~-------------g~----  229 (411)
                         ......++|+|||.+|++.-..++   .+.|-.+.. +.-..+-+|.+++.+++|+|.             ..    
T Consensus       216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~  295 (942)
T KOG0973|consen  216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC  295 (942)
T ss_pred             CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceE
Confidence               234678899999999987543333   455544433 445678899999999999982             11    


Q ss_pred             EEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198          230 LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (411)
Q Consensus       230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~  302 (411)
                      .+|+|+.|+. |-||.....+++..+..- ....|.+++|+|||..|++++.||+|.++.++..+-++.++.+
T Consensus       296 i~AvgSqDrS-lSVW~T~~~RPl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls~e  366 (942)
T KOG0973|consen  296 IAAVGSQDRS-LSVWNTALPRPLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALSEE  366 (942)
T ss_pred             EEEEecCCcc-EEEEecCCCCchhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccChh
Confidence            6789999999 999998777776555432 4568999999999999999999999999999988766655544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.8e-26  Score=197.72  Aligned_cols=244  Identities=14%  Similarity=0.205  Sum_probs=193.7

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      +.....+|..+|..+.|+||.++|++++ +..+.+||+.++....... +++...+.+.+|.||+..+++|+.|     +
T Consensus       261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~d-----r  334 (519)
T KOG0293|consen  261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLGFSVSSCAWCPDGFRFVTGSPD-----R  334 (519)
T ss_pred             eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCcCCCcceeEEccCCceeEecCCC-----C
Confidence            4556789999999999999999999988 9999999999866544332 2446788899999999999999998     9


Q ss_pred             eEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          115 KVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      .+..||+.. ..+...+  ....|.++++.+||+++.   .|..|++|+.++......+..+.   .+..++.+.+++++
T Consensus       335 ~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS~d~k~~  410 (519)
T KOG0293|consen  335 TIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSISKDGKLA  410 (519)
T ss_pred             cEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEcCCCcEE
Confidence            999999654 3344443  346799999999999887   79999999987765554444333   35556666666666


Q ss_pred             EEecCCCCeEEEEEcCC-cceEEEeccccc--eeEEEec-CCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          190 ACPGLQRGQVRIEHFGL-NMIKLINAHDSH--IACFTLT-LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~--i~~l~~s-p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                      ++ .-.+..+.+|+... ..++.+.+|...  +..-+|. -+..++++|++|+. |+||+..+|+++.++.+  |...|+
T Consensus       411 Lv-nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsG--Hs~~vN  486 (519)
T KOG0293|consen  411 LV-NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSG--HSKTVN  486 (519)
T ss_pred             EE-EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecC--Ccceee
Confidence            55 45788999998774 456667788654  3333454 35579999999999 99999999999999999  889999


Q ss_pred             EEEeCCC-CCEEEEEeCCCcEEEEEcccc
Q 015198          266 SIALSPN-VQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       266 ~l~~spd-g~~l~s~s~dg~I~vwd~~~~  293 (411)
                      +++|+|. -.++|++++||+|+||.....
T Consensus       487 cVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  487 CVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            9999995 457999999999999988755

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.4e-25  Score=203.49  Aligned_cols=242  Identities=14%  Similarity=0.130  Sum_probs=204.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      +.+.|+++.|+++|.+||+|. +|.|.|||....+....... .|...+-++.|.  ...+.+|+.+     +.|..+|+
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-~h~~rvg~laW~--~~~lssGsr~-----~~I~~~dv  287 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-SHASRVGSLAWN--SSVLSSGSRD-----GKILNHDV  287 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-CcCceeEEEecc--CceEEEecCC-----CcEEEEEE
Confidence            378999999999999999999 99999999987666554432 277888888888  5667777877     99999999


Q ss_pred             CCCcEEEE-Ee-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          122 HQSRCIGE-FA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       122 ~~~~~~~~-~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      +..+.... +. |...|..++|++|+.+++   .|+.+.|||....+++..+..|...+..++|+|...+.+....|+.|
T Consensus       288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D  367 (484)
T KOG0305|consen  288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD  367 (484)
T ss_pred             ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence            88776555 55 899999999999999999   79999999998888999999999988888888877664433445689


Q ss_pred             CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEE--EcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC
Q 015198          197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLAT--ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (411)
Q Consensus       197 g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s--~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (411)
                      +.|++|+...............|..|.|++..+.|++  |..++. |.||+..+.+.+..+.+  |...|..++++|||.
T Consensus       368 ~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la~SPdg~  444 (484)
T KOG0305|consen  368 RCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLALSPDGE  444 (484)
T ss_pred             cEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEEECCCCC
Confidence            9999999876555544556789999999999876665  345667 99999999999999988  888999999999999


Q ss_pred             EEEEEeCCCcEEEEEcccccc
Q 015198          275 WLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       275 ~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      .+++|+.|.++++|++-...+
T Consensus       445 ~i~t~a~DETlrfw~~f~~~~  465 (484)
T KOG0305|consen  445 TIVTGAADETLRFWNLFDERP  465 (484)
T ss_pred             EEEEecccCcEEeccccCCCC
Confidence            999999999999999987643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=8.3e-26  Score=184.25  Aligned_cols=284  Identities=12%  Similarity=0.085  Sum_probs=230.2

Q ss_pred             ccCCCCCCeEEEEEcC---CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           39 FSDVDEIELISVSWNQ---DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~---~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      ...+|..+|..++|+|   +|-+|++++ |+.-.+-+-+++..+-.  |.+|...+.....+.+....+++..|     -
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt--feghkgavw~~~l~~na~~aasaaad-----f   81 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT--FEGHKGAVWSATLNKNATRAASAAAD-----F   81 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe--eeccCcceeeeecCchhhhhhhhccc-----c
Confidence            5689999999999985   788899999 99988888888775544  55888999999888888888888887     9


Q ss_pred             eEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      +-+|||.-+|..+..+.|+.-|.+++|+.|..+++   .+.-+++||++.. .+...+.+|...+..+-|....  +.|+
T Consensus        82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD--~~iL  159 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED--KCIL  159 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC--ceEE
Confidence            99999999999999999999999999999999888   5677999999764 4556778888766655555443  3344


Q ss_pred             EecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198          191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (411)
                      ++ ..|++|++|+........-.....+|+++.++++|++|.++. .+. |.+||..+..+++.++.   +..|.+..++
T Consensus       160 SS-add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gss-V~Fwdaksf~~lKs~k~---P~nV~SASL~  233 (334)
T KOG0278|consen  160 SS-ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSS-VKFWDAKSFGLLKSYKM---PCNVESASLH  233 (334)
T ss_pred             ee-ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-Cce-eEEeccccccceeeccC---cccccccccc
Confidence            43 689999999876544433334678899999999999887765 345 99999999999988874   5579999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccccc
Q 015198          271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW  350 (411)
Q Consensus       271 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (411)
                      |+...+++|++|..++.||..+++...-.                                                   
T Consensus       234 P~k~~fVaGged~~~~kfDy~TgeEi~~~---------------------------------------------------  262 (334)
T KOG0278|consen  234 PKKEFFVAGGEDFKVYKFDYNTGEEIGSY---------------------------------------------------  262 (334)
T ss_pred             CCCceEEecCcceEEEEEeccCCceeeec---------------------------------------------------
Confidence            99999999999999999999999876410                                                   


Q ss_pred             ceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCCC
Q 015198          351 SFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHG  392 (411)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~  392 (411)
                          .+-+.+.+-++.|+|+ ....+++.||.+++|+..+.+-
T Consensus       263 ----nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  263 ----NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ----ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence                1223356778899999 5566677799999999998543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.94  E-value=3.2e-26  Score=194.87  Aligned_cols=236  Identities=13%  Similarity=0.277  Sum_probs=188.6

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..+.||.+.|.|+.|.  .+.+++|+ |.+|+|||+++++.+... + .|...+..+.|+.+  ++++++.|     ..+
T Consensus       231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-i-hHceaVLhlrf~ng--~mvtcSkD-----rsi  299 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-I-HHCEAVLHLRFSNG--YMVTCSKD-----RSI  299 (499)
T ss_pred             HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-h-hhcceeEEEEEeCC--EEEEecCC-----cee
Confidence            3468999999999995  45888999 999999999996654333 3 77788888888765  46677777     999


Q ss_pred             EEEECCCCcEEE---EEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          117 IIWDDHQSRCIG---EFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       117 ~vwd~~~~~~~~---~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      .+||+.....+.   .+. |...|+.+.|+..-..-+ .|.+|++|++.+++.++++.+|..  .+.|+.+.+  + +++
T Consensus       300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkR--GIAClQYr~--r-lvV  374 (499)
T KOG0281|consen  300 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR--GIACLQYRD--R-LVV  374 (499)
T ss_pred             EEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccc--cceehhccC--e-EEE
Confidence            999987765322   222 889999999987633333 799999999999999999999987  445555543  3 455


Q ss_pred             ecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce---------EEEEeCCCCC
Q 015198          192 PGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR---------LQEVRRGVDR  261 (411)
Q Consensus       192 ~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~---------~~~~~~~~~~  261 (411)
                      +|+.|.+|++|+.. +.+++.+++|+.-|.++.|  |.+.+++|+.||+ |+|||+.++..         +.++..  |.
T Consensus       375 SGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGk-ikvWdl~aaldpra~~~~~Cl~~lv~--hs  449 (499)
T KOG0281|consen  375 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLQAALDPRAPASTLCLRTLVE--HS  449 (499)
T ss_pred             ecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccce-EEEEecccccCCcccccchHHHhhhh--cc
Confidence            79999999998865 6788999999999999999  5568999999999 99999987642         333344  78


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +.|..++|.  ...+++++.|.+|.|||+..+-..
T Consensus       450 gRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  450 GRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence            899999994  577999999999999999887643

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=3.4e-24  Score=187.47  Aligned_cols=235  Identities=12%  Similarity=0.169  Sum_probs=200.6

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      ..|.++...|....+++|+ |..+.++|....+....  +.+|...+..+.++++...+++++.|     ..|+||....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~--~~Gh~kki~~v~~~~~~~~v~~aSad-----~~i~vws~~~  292 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILAT--LKGHTKKITSVKFHKDLDTVITASAD-----EIIRVWSVPL  292 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhh--ccCcceEEEEEEeccchhheeecCCc-----ceEEeecccc
Confidence            5688899888878899999 98999999887444333  56999999999999999999999988     9999999777


Q ss_pred             CcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeE
Q 015198          124 SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQV  199 (411)
Q Consensus       124 ~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i  199 (411)
                      ........ |..+|+.+..+|.|.+++   .|++..+.|++++..+.........+...+..++|||.++. +|..||.|
T Consensus       293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifg-tgt~d~~v  371 (506)
T KOG0289|consen  293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFG-TGTPDGVV  371 (506)
T ss_pred             ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEe-ccCCCceE
Confidence            66555555 999999999999999998   78999999999999887776655667788888999987765 58899999


Q ss_pred             EEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEE
Q 015198          200 RIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV  278 (411)
Q Consensus       200 ~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s  278 (411)
                      +||+... ..+..|.+|.++|..++|+.+|-+|+++.+|+. |++||++..+...++... ....+.++.|.+.|.+|+.
T Consensus       372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~  449 (506)
T KOG0289|consen  372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGI  449 (506)
T ss_pred             EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEe
Confidence            9998765 467788999999999999999999999999999 999999999888888764 3347999999999999999


Q ss_pred             EeCCCcEEEEE
Q 015198          279 ASDKGTVHIFS  289 (411)
Q Consensus       279 ~s~dg~I~vwd  289 (411)
                      ++.|=+|++++
T Consensus       450 ~g~~l~Vy~~~  460 (506)
T KOG0289|consen  450 AGSDLQVYICK  460 (506)
T ss_pred             ecceeEEEEEe
Confidence            97765555554

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4e-25  Score=180.71  Aligned_cols=237  Identities=13%  Similarity=0.157  Sum_probs=187.2

Q ss_pred             CCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEE
Q 015198           43 DEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        43 h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      -.+.+..++|++.. ..+++++ ||.++|||...... ....++.|...+.++.|++ +...+++++.|     ++|++|
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD-----~TiKLW  132 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFKEHKREVYSVDWNTVRRRIFLTSSWD-----GTIKLW  132 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhHHHhhhhheEEeccccccceeEEeeccC-----CceEee
Confidence            46778999999874 3455555 99999999754333 2333678999999999987 44556666888     999999


Q ss_pred             ECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       120 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      +....+.++++. |...|....|+|...-++    .|+.+++||++.......+..|..  .+++..++.-...++++|+
T Consensus       133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~--Eil~cdw~ky~~~vl~Tg~  210 (311)
T KOG0277|consen  133 DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS--EILCCDWSKYNHNVLATGG  210 (311)
T ss_pred             cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc--eeEeecccccCCcEEEecC
Confidence            999999999998 899999999999654333    799999999976444444888875  4455555544445666788


Q ss_pred             CCCeEEEEEcCC--cceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCce-EEEEeCCCCCcceEEEEeC
Q 015198          195 QRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       195 ~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~s  270 (411)
                      .|+.|+.|+.+.  .++..+.+|.-.|..++|+|.. .+||+++.|-+ +||||...+.- +.+...  |..-+..+.|+
T Consensus       211 vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~~--HtEFv~g~Dws  287 (311)
T KOG0277|consen  211 VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVDH--HTEFVCGLDWS  287 (311)
T ss_pred             CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhhc--cceEEeccccc
Confidence            999999999875  5678889999999999999975 48999999999 99999875543 334443  78889999999


Q ss_pred             C-CCCEEEEEeCCCcEEEEEc
Q 015198          271 P-NVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       271 p-dg~~l~s~s~dg~I~vwd~  290 (411)
                      + ++.++|+++.|+.++||+-
T Consensus       288 ~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  288 LFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccCceeeecccccceeeecc
Confidence            7 5678999999999999983

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=5.5e-26  Score=185.27  Aligned_cols=243  Identities=10%  Similarity=0.116  Sum_probs=198.2

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      .....+|.+.|++..++.+-...|++. |=+-+|||.-++..+...   .|..-+..++|+.+...+++|+.+     ..
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf---~hkhivk~~af~~ds~~lltgg~e-----kl  123 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF---EHKHIVKAVAFSQDSNYLLTGGQE-----KL  123 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh---hhhheeeeEEecccchhhhccchH-----HH
Confidence            355789999999999999998889988 999999999887665443   566667889999999999999998     99


Q ss_pred             EEEEECCCCc-EEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          116 VIIWDDHQSR-CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       116 i~vwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      ++|+|++..+ +..++. |.+.|..+.|....+.++   .|++|++||.++++.++.+.... ++..+.++.  ++.+|.
T Consensus       124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~--dG~ilT  200 (334)
T KOG0278|consen  124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQ--DGRILT  200 (334)
T ss_pred             hhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeecc--CCCEEE
Confidence            9999987654 344555 899999999987666555   79999999999999999997654 344455554  555664


Q ss_pred             EecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE-eCCCCCcceEEEE
Q 015198          191 CPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV-RRGVDRAEIYSIA  268 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~-~~~~~~~~v~~l~  268 (411)
                      ++  ..+.|.+|+... ..++.+ .-...|.+..++|+...+++|++|.. ++.||..+|+.+..+ ++  |.++|.++.
T Consensus       201 ia--~gssV~Fwdaksf~~lKs~-k~P~nV~SASL~P~k~~fVaGged~~-~~kfDy~TgeEi~~~nkg--h~gpVhcVr  274 (334)
T KOG0278|consen  201 IA--YGSSVKFWDAKSFGLLKSY-KMPCNVESASLHPKKEFFVAGGEDFK-VYKFDYNTGEEIGSYNKG--HFGPVHCVR  274 (334)
T ss_pred             Ee--cCceeEEeccccccceeec-cCccccccccccCCCceEEecCcceE-EEEEeccCCceeeecccC--CCCceEEEE
Confidence            43  567899988665 333333 34567888999999999999999999 999999999998886 44  889999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      |+|||...++|++||+|++|....++..
T Consensus       275 FSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  275 FSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ECCCCceeeccCCCceEEEEEecCCCch
Confidence            9999999999999999999999887654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.1e-25  Score=192.57  Aligned_cols=288  Identities=10%  Similarity=0.103  Sum_probs=217.5

Q ss_pred             cCCCCCCccccCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCC
Q 015198           30 ASFGHPQTAFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD  107 (411)
Q Consensus        30 ~~~~~~~~~~~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  107 (411)
                      ..|..|....+.+|.+.|.|++=+|.. ..+++|+ ||.|+|||+........  +..|...+..+.+..  ..++++++
T Consensus        52 R~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~--f~AH~G~V~Gi~v~~--~~~~tvgd  127 (433)
T KOG0268|consen   52 RVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT--FKAHEGLVRGICVTQ--TSFFTVGD  127 (433)
T ss_pred             HHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe--eecccCceeeEEecc--cceEEecC
Confidence            445667777889999999999999987 7899999 99999999987544443  446666666666666  55666777


Q ss_pred             CCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          108 NSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       108 d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                      |     .+|+.|.++- ..++++.....+..+.-+..+..++ ....|.|||.....++..+......+  .++.++|-.
T Consensus       128 D-----KtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti--~svkfNpvE  199 (433)
T KOG0268|consen  128 D-----KTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSI--SSVKFNPVE  199 (433)
T ss_pred             C-----cceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCce--eEEecCCCc
Confidence            6     9999999654 5777777788888888777777777 56689999998888888888776644  444455443


Q ss_pred             eEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc-eEEEEeCCCCCcce
Q 015198          187 SVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-RLQEVRRGVDRAEI  264 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v  264 (411)
                      ..|+.++..|+.|.|++.. ..+++.+. -...-+.|+|+|++-.+++|++|.. ++.||++..+ .+....+  |...|
T Consensus       200 TsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d--hvsAV  275 (433)
T KOG0268|consen  200 TSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD--HVSAV  275 (433)
T ss_pred             chheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc--cceeE
Confidence            4444456689999995544 45554433 2344578999998888999999999 9999998764 4555566  88899


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCc
Q 015198          265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK  344 (411)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (411)
                      .++.|||.|+-+++|+.|.+|+||.++.+..++.                                      +..+    
T Consensus       276 ~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi--------------------------------------Yhtk----  313 (433)
T KOG0268|consen  276 MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI--------------------------------------YHTK----  313 (433)
T ss_pred             EEeccCCCcchhccccccceEEEeecCCCcchhh--------------------------------------hhHh----
Confidence            9999999999999999999999999998875431                                      1100    


Q ss_pred             ccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198          345 YFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~  388 (411)
                                 .+  ..+.++.|+.+ ..|++|+.||.|.+|.-.
T Consensus       314 -----------RM--q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  314 -----------RM--QHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             -----------hh--heeeEEEEeccccEEEecCCCcceeeeecc
Confidence                       00  24567889998 556666778999999765

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=8e-24  Score=201.13  Aligned_cols=226  Identities=14%  Similarity=0.121  Sum_probs=175.8

Q ss_pred             ccCCCCCCeEEEEEcC-CCCEEEEEe-CCcEEEEecCCCcc-----eEEeecCCCCEEEEEEeccCCe-EEEEecCCCCC
Q 015198           39 FSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQ  110 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~-~g~~la~g~-dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~  110 (411)
                      ...+|.+.|++++|+| ++++|++|+ |+.|+||++.+...     .....+.+|...+..+.|+|+. .++++++.|  
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D--  147 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD--  147 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC--
Confidence            4678999999999999 889999999 99999999975421     1123355788889999999975 688888887  


Q ss_pred             CCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          111 YPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       111 ~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                         +.|+|||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|..... ....+.+++
T Consensus       148 ---gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~-~~~~w~~~~  223 (493)
T PTZ00421        148 ---MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKS-QRCLWAKRK  223 (493)
T ss_pred             ---CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcc-eEEEEcCCC
Confidence               999999999999888887 889999999999998887   799999999999999888887765432 223344444


Q ss_pred             eEEEEec---CCCCeEEEEEcCC--cceEEEecc-ccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEEEEeCCC
Q 015198          187 SVLACPG---LQRGQVRIEHFGL--NMIKLINAH-DSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGV  259 (411)
Q Consensus       187 ~~l~~~g---~~dg~i~i~~~~~--~~~~~~~~~-~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~  259 (411)
                      ..++++|   +.|+.|++|+.+.  .++.....+ ...+....|++++++|++++ .|+. |++||+.+++.+...... 
T Consensus       224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~~~~~-  301 (493)
T PTZ00421        224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFCSSYS-  301 (493)
T ss_pred             CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEEeecc-
Confidence            4565555   3589999999764  233333333 34556677899999998887 4999 999999999887665432 


Q ss_pred             CCcceEEEEeCCC
Q 015198          260 DRAEIYSIALSPN  272 (411)
Q Consensus       260 ~~~~v~~l~~spd  272 (411)
                      ...++..++|.|.
T Consensus       302 s~~~~~g~~~~pk  314 (493)
T PTZ00421        302 SVEPHKGLCMMPK  314 (493)
T ss_pred             CCCCCcceEeccc
Confidence            4457788888884

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.8e-24  Score=179.53  Aligned_cols=240  Identities=16%  Similarity=0.219  Sum_probs=191.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE--EEEecCCCCCCCCCe
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL--ALVGAGDNSQYPPTK  115 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~~~d~~  115 (411)
                      ....|.+.|++++.+  +.++|+|+ |.+|+|||+....+.-.. + .|...+.++.|.++..  .|++|++|     |.
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l-~HagsitaL~F~~~~S~shLlS~sdD-----G~  108 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-L-SHAGSITALKFYPPLSKSHLLSGSDD-----GH  108 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-e-ccccceEEEEecCCcchhheeeecCC-----Cc
Confidence            467899999999985  78999999 999999999875554433 2 6778888888887664  78888888     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      |.+|+....+++..++ |.+.|+.++++|.+++..   .|+.++.||+-+|+.-........+ ..  +.|+++|.+++.
T Consensus       109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a-t~--v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA-TL--VSWSPQGDHFVV  185 (362)
T ss_pred             EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc-ee--eEEcCCCCEEEE
Confidence            9999999999999998 899999999999999887   7999999999888776666554432 23  455566676666


Q ss_pred             ecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe--
Q 015198          192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL--  269 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~--  269 (411)
                      .+  ...|-+|......+.........+.++.|. ++..|++|..|+. |.+||..+..++..+.+  |+..|.++.+  
T Consensus       186 ~~--~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~A--H~~RVK~i~~~~  259 (362)
T KOG0294|consen  186 SG--RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLA--HENRVKDIASYT  259 (362)
T ss_pred             Ee--ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeec--chhheeeeEEEe
Confidence            44  346777766654443333334567777775 5568899999999 99999999999999988  8999999884  


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          270 SPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       270 spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      .|++.+|++++.||.|+|||++...+.
T Consensus       260 ~~~~~~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  260 NPEHEYLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             cCCceEEEEeccCceEEEEEccccccC
Confidence            367889999999999999999987544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=2.1e-24  Score=181.22  Aligned_cols=247  Identities=14%  Similarity=0.207  Sum_probs=194.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC----------------cceEEeecCCCCEEEEEEeccCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF----------------KETFRRDLKSGGFRIVEMLFRCNIL  100 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  100 (411)
                      .-...|..++.+.+|++||.++|+|+ |-.|+|.|++..                .....+.+-.|...+..+.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            44678999999999999999999999 999999998710                1112233446777888999999999


Q ss_pred             EEEecCCCCCCCCCeEEEEECCCCcE---EEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEec-cCC
Q 015198          101 ALVGAGDNSQYPPTKVIIWDDHQSRC---IGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET-LAN  173 (411)
Q Consensus       101 ~l~s~~~d~~~~d~~i~vwd~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~-~~~  173 (411)
                      +|++++.|     ++|+++|+..-..   .+.++...+|.++.|+|.|.+++   ....+++||+++.++...-.. ...
T Consensus       186 ILiS~srD-----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh  260 (430)
T KOG0640|consen  186 ILISGSRD-----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH  260 (430)
T ss_pred             eEEeccCC-----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence            99999998     9999999766433   33444678999999999999888   567899999999887654421 122


Q ss_pred             CcceEEEccCCCceEEEEecCCCCeEEEEE-cCCcceEEEe-cc-ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc
Q 015198          174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEH-FGLNMIKLIN-AH-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT  250 (411)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~-~~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~  250 (411)
                      ...+.++.+++.+.+. ++|+.||.|+||+ ...+++..+. .| ...|.+..|..+|+++++.+.|.. +++|.+.+++
T Consensus       261 t~ai~~V~Ys~t~~lY-vTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R  338 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSLY-VTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGR  338 (430)
T ss_pred             ccceeEEEecCCccEE-EEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCc
Confidence            2355666666666555 4688999999987 5667777773 55 457899999999999999999999 9999999988


Q ss_pred             eEEEEeCC-----------------------------------------------CCCcceEEEEeCCCCCEEEEEeCCC
Q 015198          251 RLQEVRRG-----------------------------------------------VDRAEIYSIALSPNVQWLAVASDKG  283 (411)
Q Consensus       251 ~~~~~~~~-----------------------------------------------~~~~~v~~l~~spdg~~l~s~s~dg  283 (411)
                      ++.++.+.                                               .|.+.+..+.-||.+.-+++++.|-
T Consensus       339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence            77665431                                               2566778888889999999999999


Q ss_pred             cEEEEEcc
Q 015198          284 TVHIFSLR  291 (411)
Q Consensus       284 ~I~vwd~~  291 (411)
                      .+++|--+
T Consensus       419 raRFWyrr  426 (430)
T KOG0640|consen  419 RARFWYRR  426 (430)
T ss_pred             eeeeeeec
Confidence            99999644

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.3e-23  Score=175.89  Aligned_cols=249  Identities=12%  Similarity=0.119  Sum_probs=190.4

Q ss_pred             cccCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           38 AFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      ......++.|.+|+|||. ..+++.|+ |++||+|+++.......+....+...+.++.|+.++..+++++.|     +.
T Consensus        21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D-----k~   95 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD-----KQ   95 (347)
T ss_pred             ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC-----Cc
Confidence            334556788999999995 55565777 999999999874443334445788899999999999998888887     99


Q ss_pred             EEEEECCCCcEEEEEeecCceeEEEEcCCeE--EEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI--VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      +++||+.+++....-.|..+|..+.|-+...  .++   .|.+|+.||++..+++.++..+.   .+.++..  ...+++
T Consensus        96 ~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe---RvYa~Dv--~~pm~v  170 (347)
T KOG0647|consen   96 AKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE---RVYAADV--LYPMAV  170 (347)
T ss_pred             eEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc---eeeehhc--cCceeE
Confidence            9999999998777777999999999987665  444   79999999999999988887655   2333333  223443


Q ss_pred             EecCCCCeEEEEEcCCcceE--EE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC--ceEEEEeCCCC-----
Q 015198          191 CPGLQRGQVRIEHFGLNMIK--LI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TRLQEVRRGVD-----  260 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~~~--~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~~~~~~~~~~-----  260 (411)
                      + +..+..|.++++...+..  .+ ..-.-.++||+..+|....+.|+-+|. +-|..+..+  +.-.+|+.|..     
T Consensus       171 V-ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~~~~  248 (347)
T KOG0647|consen  171 V-ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTNSVN  248 (347)
T ss_pred             E-EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEeccCCCCC
Confidence            3 556888888777543221  11 123456889999999888899999999 999998876  44556666321     


Q ss_pred             --CcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCC
Q 015198          261 --RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGED  298 (411)
Q Consensus       261 --~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~  298 (411)
                        --.|++|+|+|.-..|++++.||++.+||-+...+...
T Consensus       249 ~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~  288 (347)
T KOG0647|consen  249 DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT  288 (347)
T ss_pred             CceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence              12578899999999999999999999999988877653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=1.4e-24  Score=201.59  Aligned_cols=235  Identities=15%  Similarity=0.201  Sum_probs=204.1

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      +.+.+..|-|.++++++|. .|.+.+||+.....+-..  +.|...+..+...|++..+++++.|     .+|++||..-
T Consensus       413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti--~AHdgaIWsi~~~pD~~g~vT~saD-----ktVkfWdf~l  485 (888)
T KOG0306|consen  413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETI--RAHDGAIWSISLSPDNKGFVTGSAD-----KTVKFWDFKL  485 (888)
T ss_pred             ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhh--hccccceeeeeecCCCCceEEecCC-----cEEEEEeEEE
Confidence            3788999999999999999 999999999875544443  3788889999999999999999988     9999999421


Q ss_pred             -----CcE--------EEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          124 -----SRC--------IGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       124 -----~~~--------~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                           |..        ..++.....|.|+.++||+++++   .|++|++|-+.+.+..-.+.+|.-|+.++.++++.  .
T Consensus       486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS--k  563 (888)
T KOG0306|consen  486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS--K  563 (888)
T ss_pred             EeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc--C
Confidence                 211        13344678999999999999999   79999999999999999999999877666666654  4


Q ss_pred             EEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE
Q 015198          188 VLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (411)
                      +++ +|+.|..|++|-.+ +.+-+.+-+|...|.++.|-|+..++++++.|+. |+-||-...+.++.+.+  |...|++
T Consensus       564 liv-TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~--H~~ev~c  639 (888)
T KOG0306|consen  564 LIV-TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDG--HHSEVWC  639 (888)
T ss_pred             eEE-eccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcce-EEeechhhhhhheeecc--chheeee
Confidence            554 68899999999887 4677888999999999999999999999999999 99999999999999999  8889999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          267 IALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       267 l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      ++.+|+|.++++++.|.+|++|.-..
T Consensus       640 Lav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  640 LAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             eEEcCCCCeEEeccCCceeEeeeccC
Confidence            99999999999999999999998655

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=5.8e-24  Score=183.10  Aligned_cols=242  Identities=13%  Similarity=0.177  Sum_probs=195.8

Q ss_pred             ccccCCCCCCeEEEEEcCCCC---EEEEEe-CCcEEEEecCCCcceEEee--cCCCCEEEEEEeccCCeEEEEecCCCCC
Q 015198           37 TAFSDVDEIELISVSWNQDYG---CFAAGT-SCGFRIYNCEPFKETFRRD--LKSGGFRIVEMLFRCNILALVGAGDNSQ  110 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~---~la~g~-dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~  110 (411)
                      .....+|.++|.+++|.-...   .|++++ |.++++|.++.........  ..+|...+.++...+++..+++++.|  
T Consensus       137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D--  214 (423)
T KOG0313|consen  137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD--  214 (423)
T ss_pred             EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccc--
Confidence            345789999999888864433   588888 9999999998755443322  23788889999999999999999998  


Q ss_pred             CCCCeEEEEECCC-------------------------CcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCc
Q 015198          111 YPPTKVIIWDDHQ-------------------------SRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDL  162 (411)
Q Consensus       111 ~~d~~i~vwd~~~-------------------------~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~  162 (411)
                         ..|.+|+..+                         +.++..+. |..+|.++.|++.+....  .|.+|+.||+.++
T Consensus       215 ---~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  215 ---TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             ---ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecc
Confidence               9999999321                         22344455 889999999999655544  8999999999999


Q ss_pred             eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc----ceEEEeccccceeEEEecCCCC-EEEEEcCC
Q 015198          163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLDGL-LLATASTR  237 (411)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~d  237 (411)
                      +....+.+..   ...+++..+...+|++ |+.|..+++|+.+..    ..+.+.+|...|.++.|+|... .|++++.|
T Consensus       292 ~~~~~~~~~k---sl~~i~~~~~~~Ll~~-gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D  367 (423)
T KOG0313|consen  292 GLKSTLTTNK---SLNCISYSPLSKLLAS-GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD  367 (423)
T ss_pred             cceeeeecCc---ceeEeecccccceeee-cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence            9988886654   4566666666667765 789999999887642    4567889999999999999765 68899999


Q ss_pred             CeEEEEEECCCCc-eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          238 GTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       238 g~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      +. +++||+++.+ +++.+.+  |...|.++.|+ ++.+|++|+.|.+|+|+.-.
T Consensus       368 ~t-~klWDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  368 NT-VKLWDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             Ce-EEEEEeccCCCcceeecc--CCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            99 9999999987 8999988  88899999997 46789999999999998754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.8e-23  Score=192.17  Aligned_cols=277  Identities=14%  Similarity=0.124  Sum_probs=224.3

Q ss_pred             EEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEE
Q 015198           48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI  127 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~  127 (411)
                      +=+.|+ ....||+|....|.+|+..+........+  +...+.++.|++++..|+.|..+     |.|.|||..+.+.+
T Consensus       181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~~  252 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF--GEELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKKT  252 (484)
T ss_pred             hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEec--CCCceEEEEECCCCCEEEEeecC-----CeEEEEehhhcccc
Confidence            346677 45689999999999999988664444443  37889999999999999999988     99999999998888


Q ss_pred             EEEe--ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEE-EeccCCCcceEEEccCCCceEEEEecCCCCeEEEEE
Q 015198          128 GEFA--FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH  203 (411)
Q Consensus       128 ~~~~--~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~  203 (411)
                      ..+.  |...|-+++|+....... .++.|..+|++..+.... +..|..  .+|.+.+++++.++|. |+.|+.+.||+
T Consensus       253 ~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q--eVCgLkws~d~~~lAS-GgnDN~~~Iwd  329 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ--EVCGLKWSPDGNQLAS-GGNDNVVFIWD  329 (484)
T ss_pred             ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccc--eeeeeEECCCCCeecc-CCCccceEecc
Confidence            8876  689999999995444444 899999999988766555 566665  7888999999999986 77999999988


Q ss_pred             c-CCcceEEEeccccceeEEEecCC-CCEEEEE--cCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEE-
Q 015198          204 F-GLNMIKLINAHDSHIACFTLTLD-GLLLATA--STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV-  278 (411)
Q Consensus       204 ~-~~~~~~~~~~~~~~i~~l~~sp~-g~~l~s~--s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-  278 (411)
                      . ...+...+..|.+.|.+++|+|- ..+||+|  +.|+. |++||..+|+.+..+..   ...|.+|.|++..+-|++ 
T Consensus       330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~st  405 (484)
T KOG0305|consen  330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLST  405 (484)
T ss_pred             CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEe
Confidence            7 45778889999999999999994 4588886  46899 99999999999988874   458999999998876665 


Q ss_pred             -EeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEe
Q 015198          279 -ASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHI  357 (411)
Q Consensus       279 -~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (411)
                       |..++.|.||+..+.+.......|                                                       
T Consensus       406 hG~s~n~i~lw~~ps~~~~~~l~gH-------------------------------------------------------  430 (484)
T KOG0305|consen  406 HGYSENQITLWKYPSMKLVAELLGH-------------------------------------------------------  430 (484)
T ss_pred             cCCCCCcEEEEeccccceeeeecCC-------------------------------------------------------
Confidence             445678999999997766544444                                                       


Q ss_pred             CCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCCCCcE
Q 015198          358 PEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEM  395 (411)
Q Consensus       358 ~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~~~  395 (411)
                       ...+...+++|+ ..|++++.|..+.+|++-.....++
T Consensus       431 -~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~~  468 (484)
T KOG0305|consen  431 -TSRVLYLALSPDGETIVTGAADETLRFWNLFDERPKST  468 (484)
T ss_pred             -cceeEEEEECCCCCEEEEecccCcEEeccccCCCCccc
Confidence             234566889999 8899999999999999987533333

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.7e-24  Score=200.58  Aligned_cols=244  Identities=15%  Similarity=0.191  Sum_probs=193.3

Q ss_pred             CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC--------------------------------C--------
Q 015198           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ--------------------------------S--------  124 (411)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~--------------------------------~--------  124 (411)
                      .|...|.++.|+++|.+||+++.|     +.|+||.+..                                .        
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD-----~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGED-----GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCC-----ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            788899999999999999999999     9999998644                                0        


Q ss_pred             --------------------cEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEc
Q 015198          125 --------------------RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS  181 (411)
Q Consensus       125 --------------------~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  181 (411)
                                          ++++.+. |.+.|.++.|+.++.++.  .|.+|++|++...+++..|. |...+++++|.
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn  418 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN  418 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence                                0112222 567899999999998888  89999999999999999886 66667777777


Q ss_pred             cCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC-
Q 015198          182 HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-  260 (411)
Q Consensus       182 ~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-  260 (411)
                      |-.|. +++ +|+-||.|+||......+.....-..-|++++|.|||++.++|+.+|. +++|+....+....+....+ 
T Consensus       419 PvDDr-yFi-SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  419 PVDDR-YFI-SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             ccCCC-cEe-ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEeecc
Confidence            77665 333 699999999999999888888777899999999999999999999999 99999988776655433212 


Q ss_pred             -----CcceEEEEeCCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCc
Q 015198          261 -----RAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSS  334 (411)
Q Consensus       261 -----~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (411)
                           ...|+.++|.|.. ..|++.++|..|+|||.++.+......+..                               
T Consensus       496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-------------------------------  544 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-------------------------------  544 (712)
T ss_pred             CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-------------------------------
Confidence                 2279999999743 357778899999999998776543222210                               


Q ss_pred             ccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCC
Q 015198          335 LSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVH  391 (411)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~  391 (411)
                                             .........|+.+ ..||+++.|..||+|.++...
T Consensus       545 -----------------------n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  545 -----------------------NTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             -----------------------cCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence                                   0123445678888 789999999999999997643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.5e-23  Score=172.22  Aligned_cols=238  Identities=19%  Similarity=0.249  Sum_probs=204.4

Q ss_pred             ccCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           39 FSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ...+|.+.|-.++|+|. ..+|++++ |..|++||....+.......   ...-+-+.|+|++.+++.++.|     ..|
T Consensus        59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~---~~eni~i~wsp~g~~~~~~~kd-----D~i  130 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET---KGENINITWSPDGEYIAVGNKD-----DRI  130 (313)
T ss_pred             cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec---cCcceEEEEcCCCCEEEEecCc-----ccE
Confidence            45789999999999986 56788888 99999999998777666643   3334456789999998888887     899


Q ss_pred             EEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      ...|.++.+.+...+....+..+.|+.++.+++   ..|.|.|......+++..++.|..  .++|+.++|+|+++|+ |
T Consensus       131 t~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~-G  207 (313)
T KOG1407|consen  131 TFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFAT-G  207 (313)
T ss_pred             EEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc--ceEEEEECCCCceEee-c
Confidence            999999999999998888899999987666666   458999999999999999998874  8999999999999986 8


Q ss_pred             CCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198          194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (411)
Q Consensus       194 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (411)
                      +.|..+.+|+.+. -+++.+..+.-+|..+.|+.||++||+|++|.. |-|=++++|..+.++.   +.++...++|+|.
T Consensus       208 sADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~-IDIA~vetGd~~~eI~---~~~~t~tVAWHPk  283 (313)
T KOG1407|consen  208 SADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF-IDIAEVETGDRVWEIP---CEGPTFTVAWHPK  283 (313)
T ss_pred             cccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce-EEeEecccCCeEEEee---ccCCceeEEecCC
Confidence            8999999998764 678888999999999999999999999999999 9999999999999998   6778999999999


Q ss_pred             CCEEEEEeCC---------CcEEEEEcc
Q 015198          273 VQWLAVASDK---------GTVHIFSLR  291 (411)
Q Consensus       273 g~~l~s~s~d---------g~I~vwd~~  291 (411)
                      ..+||-++.|         |.+++|-+.
T Consensus       284 ~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  284 RPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             CceeeEEecCCCCccccccceeEEecCC
Confidence            9999987765         466766543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.8e-23  Score=173.73  Aligned_cols=285  Identities=16%  Similarity=0.194  Sum_probs=204.4

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcce----EEeecCCCCEEEEEEeccCCeE-EEEecCCCCC
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQ  110 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~  110 (411)
                      ...+.+|.+.|++++|+.||++||+++ |+.|+||+++.+...    ++..+...  ....+.|.||-. ++++....  
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d--hpT~V~FapDc~s~vv~~~~g--  154 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD--HPTRVVFAPDCKSVVVSVKRG--  154 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC--CceEEEECCCcceEEEEEccC--
Confidence            356889999999999999999999999 999999999865432    22222222  344566777643 33333333  


Q ss_pred             CCCCeEEEEECCC---CcEEE--------EEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCC
Q 015198          111 YPPTKVIIWDDHQ---SRCIG--------EFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANL  174 (411)
Q Consensus       111 ~~d~~i~vwd~~~---~~~~~--------~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~  174 (411)
                         .++++|.+..   |..-.        .+.  |...+..+-....+.++.   .|..|.+|+++ |+.+..+......
T Consensus       155 ---~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~  230 (420)
T KOG2096|consen  155 ---NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS  230 (420)
T ss_pred             ---CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence               7899997533   21111        111  556677777778888887   79999999998 8999888776654


Q ss_pred             cceEEEccCCCceEEEEecCCCCeEEEEEcC----C-----cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFG----L-----NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       175 ~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~----~-----~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                      ....+++  |+|++++++| -.-.|++|..-    +     ..+..+++|...|..++|+++.+.+++.+.||. ++|||
T Consensus       231 n~~aavS--P~GRFia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwd  306 (420)
T KOG2096|consen  231 NYDAAVS--PDGRFIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWD  306 (420)
T ss_pred             ccceeeC--CCCcEEEEec-CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEee
Confidence            4555555  4668888876 45678887642    2     346678999999999999999999999999999 99999


Q ss_pred             CCC-------CceEEEEeCCC--CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCC
Q 015198          246 TVD-------GTRLQEVRRGV--DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHS  316 (411)
Q Consensus       246 ~~~-------~~~~~~~~~~~--~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (411)
                      ++-       .+.+++.....  ..+....+.++|+|+.||.+.. ..+++|..++|+...+.+                
T Consensus       307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e----------------  369 (420)
T KOG2096|consen  307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELE----------------  369 (420)
T ss_pred             ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHH----------------
Confidence            752       12222321111  1223458999999999887654 459999999987654222                


Q ss_pred             CCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          317 SSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                                                             ++.++....++|+++++.++.|.|-.++++--.+
T Consensus       370 ---------------------------------------~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ntp  403 (420)
T KOG2096|consen  370 ---------------------------------------DIHSTTISSISYSSDGKYIATCGDRYVRVIRNTP  403 (420)
T ss_pred             ---------------------------------------HhhcCceeeEEecCCCcEEeeecceeeeeecCCC
Confidence                                                   2334577889999999999999999998886555

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1e-23  Score=172.51  Aligned_cols=236  Identities=18%  Similarity=0.174  Sum_probs=178.4

Q ss_pred             EEEEEcCC-CCEEEEE--------eCCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeE
Q 015198           48 ISVSWNQD-YGCFAAG--------TSCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        48 ~~l~~s~~-g~~la~g--------~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i  116 (411)
                      +++.|+|- ..+||++        +.|.+.|.++...+. .....+ .-......++|+++ ...++++..|     |.+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GD-----GSL   85 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGD-----GSL   85 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecC-----ceE
Confidence            67889984 3344432        257788888853222 222223 44556777888864 2344444545     999


Q ss_pred             EEEECCC-CcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          117 IIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       117 ~vwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      ++||+.. ..++..++ |..+|.++.|++..+..+    .|++|++|+...++.+.++.+|...+....++|...+ +++
T Consensus        86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n-lfa  164 (311)
T KOG0277|consen   86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN-LFA  164 (311)
T ss_pred             EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCC-eEE
Confidence            9999533 45777777 999999999998654444    7999999999999999999999887777777776543 333


Q ss_pred             EecCCCCeEEEEEcCC-cceEEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCc-eEEEEeCCCCCcceEEE
Q 015198          191 CPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGT-RLQEVRRGVDRAEIYSI  267 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l  267 (411)
                       +.+.|+.+++|+.+. .....+..|...|.++.|+. +...|++|+.|+. |++||+++-+ ++.++.+  |.-.|..+
T Consensus       165 -s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~AVRkv  240 (311)
T KOG0277|consen  165 -SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLAVRKV  240 (311)
T ss_pred             -EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceEEEEE
Confidence             467899999998764 33344899999999999986 5568999999999 9999998764 5677766  88899999


Q ss_pred             EeCCCC-CEEEEEeCCCcEEEEEccccc
Q 015198          268 ALSPNV-QWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       268 ~~spdg-~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .|||.. .+||+++.|-+++|||...+.
T Consensus       241 k~Sph~~~lLaSasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  241 KFSPHHASLLASASYDMTVRIWDPERQD  268 (311)
T ss_pred             ecCcchhhHhhhccccceEEecccccch
Confidence            999964 578999999999999998665

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=5.3e-23  Score=195.55  Aligned_cols=246  Identities=13%  Similarity=0.107  Sum_probs=180.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEE-----------eecCCCCEEEEEEeccC-CeEEEEecCC
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR-----------RDLKSGGFRIVEMLFRC-NILALVGAGD  107 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~l~s~~~  107 (411)
                      +.|-..|.....++++..+++++ +.....|+...+..++.           ..+.+|...+.++.|+| ++..+++++.
T Consensus        17 ~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~   96 (493)
T PTZ00421         17 DRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE   96 (493)
T ss_pred             ccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC
Confidence            34556677777777766566555 66666676543221110           11346788899999999 7788999998


Q ss_pred             CCCCCCCeEEEEECCCCc-------EEEEEe-ecCceeEEEEcCCe-EEEE---EcCeEEEEEcCCceeeEEEeccCCCc
Q 015198          108 NSQYPPTKVIIWDDHQSR-------CIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLKLLHQIETLANLR  175 (411)
Q Consensus       108 d~~~~d~~i~vwd~~~~~-------~~~~~~-~~~~i~~~~~~~~~-~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~  175 (411)
                      |     ++|++||+.++.       .+..+. |...|.+++|+|++ .+++   .|+.|++||+++++.+..+..|...+
T Consensus        97 D-----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V  171 (493)
T PTZ00421         97 D-----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQI  171 (493)
T ss_pred             C-----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence            8     999999987652       455565 88999999999975 4454   69999999999999988888887754


Q ss_pred             ceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccc-eeEEEecCCCCEEEEEc----CCCeEEEEEECCCC
Q 015198          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSH-IACFTLTLDGLLLATAS----TRGTLIRIFNTVDG  249 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~-i~~l~~sp~g~~l~s~s----~dg~~I~vwd~~~~  249 (411)
                        .++.+++++.+|++ ++.|+.|++|+.. ++.+..+.+|.+. +..+.|.+++..|++++    .|+. |++||+++.
T Consensus       172 --~sla~spdG~lLat-gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~  247 (493)
T PTZ00421        172 --TSLEWNLDGSLLCT-TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKM  247 (493)
T ss_pred             --EEEEEECCCCEEEE-ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCC
Confidence              45555556677765 6789999999865 4566778888765 34677888887777654    4788 999999876


Q ss_pred             ce-EEEEeCCCCCcceEEEEeCCCCCEEEEEe-CCCcEEEEEccccccC
Q 015198          250 TR-LQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRVVG  296 (411)
Q Consensus       250 ~~-~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~~  296 (411)
                      .. +...... ....+....|++++++|++++ .|+.|++||+.+++..
T Consensus       248 ~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        248 ASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             CCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence            53 3333321 334566778999999999887 5999999999987643

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=7.7e-23  Score=195.42  Aligned_cols=230  Identities=10%  Similarity=0.125  Sum_probs=175.1

Q ss_pred             ccccCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCcce------EEeecCCCCEEEEEEeccCCeE-EEEecCC
Q 015198           37 TAFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKET------FRRDLKSGGFRIVEMLFRCNIL-ALVGAGD  107 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~  107 (411)
                      .....+|.+.|.+++|+|+ +.+|++|+ |+.|+||++.+....      ....+.+|...+..+.|+|++. ++++++.
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence            3457899999999999997 78999999 999999999753221      1122446778899999999775 5578887


Q ss_pred             CCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEc---
Q 015198          108 NSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS---  181 (411)
Q Consensus       108 d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---  181 (411)
                      |     +.|++||+.+++.+..+.+...|.+++|+++|.+++   .|+.|++||+++++.+..+..|...+....+.   
T Consensus       147 D-----gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~  221 (568)
T PTZ00420        147 D-----SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG  221 (568)
T ss_pred             C-----CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence            7     999999999999888888888999999999999888   58999999999999999998887654333322   


Q ss_pred             cCCCceEEEEecCCC---CeEEEEEcCC--cceEEEec--cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE
Q 015198          182 HHSSTSVLACPGLQR---GQVRIEHFGL--NMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (411)
Q Consensus       182 ~~~~~~~l~~~g~~d---g~i~i~~~~~--~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (411)
                      +++++.+|+++|..+   +.|+||+.+.  .++..+..  +.+.+......++|.++++|+.|+. |++|++..+. +..
T Consensus       222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~-~~~  299 (568)
T PTZ00420        222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS-IRK  299 (568)
T ss_pred             EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc-EEe
Confidence            345667777766543   4799999773  44544432  2333333434566889999999999 9999998764 444


Q ss_pred             EeCCCCCcceEEEEeCCCC
Q 015198          255 VRRGVDRAEIYSIALSPNV  273 (411)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg  273 (411)
                      +....+..++.+++|.|..
T Consensus       300 l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        300 VNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ecccccCCCccceEEcccc
Confidence            5544466788999999964

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=3.6e-23  Score=196.98  Aligned_cols=242  Identities=17%  Similarity=0.233  Sum_probs=200.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      .+.+|.+.|++++|..-+.+|++|+ |.++++||+.+++.....  .+|...+.++...+  ..+++|+.|     .+|+
T Consensus       244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l--~gh~stv~~~~~~~--~~~~sgs~D-----~tVk  314 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL--QGHTSSVRCLTIDP--FLLVSGSRD-----NTVK  314 (537)
T ss_pred             eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe--cCCCceEEEEEccC--ceEeeccCC-----ceEE
Confidence            3789999999999998888999999 999999999886655444  36777777665543  455668887     9999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (411)
                      +|++.++.++..+. |..+|.++.++.+-.+.. .|+.|++||+.++++++.+.+|...+.  ++..++. ..+ ++|+.
T Consensus       315 VW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~--sl~~~~~-~~~-~Sgs~  390 (537)
T KOG0274|consen  315 VWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY--SLIVDSE-NRL-LSGSL  390 (537)
T ss_pred             EEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEE--EEEecCc-ceE-Eeeee
Confidence            99999999999999 999999999994333333 899999999999999999999988544  4455443 334 46889


Q ss_pred             CCeEEEEEcCCc--ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCC
Q 015198          196 RGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (411)
Q Consensus       196 dg~i~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (411)
                      |+.|++|+....  ++..+.+|..-+..+.+  .+++|++++.|+. |++||..++++++++... |...|..+++.  .
T Consensus       391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~  464 (537)
T KOG0274|consen  391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG--K  464 (537)
T ss_pred             ccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--c
Confidence            999999998776  88899999999876654  6789999999999 999999999999999875 55788888876  4


Q ss_pred             CEEEEEeCCCcEEEEEccccccCCCC
Q 015198          274 QWLAVASDKGTVHIFSLRVRVVGEDS  299 (411)
Q Consensus       274 ~~l~s~s~dg~I~vwd~~~~~~~~~~  299 (411)
                      ..+++++.||.+++||+++++..++.
T Consensus       465 ~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  465 EEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ceEEEEecCCeeEEEecccCchhhhh
Confidence            67889999999999999999987644

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=4.9e-23  Score=181.54  Aligned_cols=248  Identities=17%  Similarity=0.217  Sum_probs=207.0

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcce---EEe-----------ec--CCCCEEEEEEeccCCe
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKET---FRR-----------DL--KSGGFRIVEMLFRCNI   99 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~---~~~-----------~~--~~~~~~~~~~~~~~~~   99 (411)
                      ......|.-+|.+++++|++++.++++ +++|.-|++.++...   ...           ..  ..|...+++++.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            345678999999999999999999999 999999998765432   111           01  1566788999999999


Q ss_pred             EEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCC--eEEEE-EcCeEEEEEcCCceeeEEEeccCCCc
Q 015198          100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRD--RIVVV-LEHKIYVYSFVDLKLLHQIETLANLR  175 (411)
Q Consensus       100 ~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~--~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~  175 (411)
                      .++++++.|     ..|.||+..+.+.++.+. |.+.|.+++|-..  ..+.+ .|..|++|+++....+.++.+|+.  
T Consensus       215 kylatgg~d-----~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd--  287 (479)
T KOG0299|consen  215 KYLATGGRD-----RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD--  287 (479)
T ss_pred             cEEEecCCC-----ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc--
Confidence            999999998     999999999999999988 9999999999754  44444 899999999998888888888887  


Q ss_pred             ceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE
Q 015198          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (411)
                      .+..+......+. +++|..|+++++|.........+.+|.+.+-|++|-.+ ..+++|+.+|. |.+|++.+.+++++.
T Consensus       288 ~v~~IdaL~reR~-vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  288 GVLGIDALSRERC-VTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTS  364 (479)
T ss_pred             ceeeechhcccce-EEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEe
Confidence            5556665555444 45688999999999988777888999999999999755 46899999999 999999999888876


Q ss_pred             eCCCC----------CcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          256 RRGVD----------RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       256 ~~~~~----------~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      ...++          +..|++++..|...++|+|+.+|.|++|.+..+-
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~  413 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL  413 (479)
T ss_pred             eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence            54321          1278999999999999999999999999999885

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=5.5e-25  Score=185.78  Aligned_cols=240  Identities=13%  Similarity=0.191  Sum_probs=206.0

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ..-++++|.|+.|+.|...||+|+ ||.|++|.+.++..+.+.. ..|...+.++.|+.++..+.+++.|     .++++
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd-rAHtkGvt~l~FSrD~SqiLS~sfD-----~tvRi  332 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD-RAHTKGVTCLSFSRDNSQILSASFD-----QTVRI  332 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh-hhhccCeeEEEEccCcchhhccccc-----ceEEE
Confidence            345789999999999999999999 9999999999966544332 3788899999999999999999998     99999


Q ss_pred             EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc-eEEEEec
Q 015198          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST-SVLACPG  193 (411)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~g  193 (411)
                      .-+++|+++++++ |..-|+...|.+||..++   .||+|++|+..+.+++.+++.......+..+..-|.+ ..+++ +
T Consensus       333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV-C  411 (508)
T KOG0275|consen  333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV-C  411 (508)
T ss_pred             eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE-E
Confidence            9999999999999 999999999999999888   7999999999999999999776555554444443333 23333 4


Q ss_pred             CCCCeEEEEEcCCcceEEEecc---ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198          194 LQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       194 ~~dg~i~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (411)
                      ...++|+|-+..++.++.+...   .+...+.+++|.|.++.+.++|+. ++.|.+.+|++..++..  |+..|..++-+
T Consensus       412 Nrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v-lYCF~~~sG~LE~tl~V--hEkdvIGl~HH  488 (508)
T KOG0275|consen  412 NRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV-LYCFSVLSGKLERTLPV--HEKDVIGLTHH  488 (508)
T ss_pred             cCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE-EEEEEeecCceeeeeec--ccccccccccC
Confidence            5788999999999999888532   456667789999999999999999 99999999999999988  78889999999


Q ss_pred             CCCCEEEEEeCCCcEEEEE
Q 015198          271 PNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       271 pdg~~l~s~s~dg~I~vwd  289 (411)
                      |..+.||+-++||.+++|.
T Consensus       489 PHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  489 PHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccchhhhhcccchhhhcC
Confidence            9999999999999999995

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=7.1e-24  Score=184.36  Aligned_cols=242  Identities=14%  Similarity=0.198  Sum_probs=194.2

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      +...+.+..+.|+++.|.++++.+++++ |+.+++|+++..+..  .+|.+|...+.++.|......+++++.|     .
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~--~TLsGHtdkVt~ak~~~~~~~vVsgs~D-----R  283 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR--HTLSGHTDKVTAAKFKLSHSRVVSGSAD-----R  283 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh--hhhcccccceeeehhhccccceeecccc-----c
Confidence            3345678888999999999999988888 999999999975543  3355899999999988877779999988     9


Q ss_pred             eEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      +|++||+....|.+++-....+.+|..++...+-. .|++|++||+++..+......+. .+..+.+++  ++..+.++ 
T Consensus       284 tiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~--~g~~lLss-  359 (459)
T KOG0288|consen  284 TIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM--DGLELLSS-  359 (459)
T ss_pred             hhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeecc--CCeEEeee-
Confidence            99999999999999888888888888773222222 79999999999999998888766 344455554  45556554 


Q ss_pred             CCCCeEEEEEcCCc-ceEEEecc----ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198          194 LQRGQVRIEHFGLN-MIKLINAH----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       194 ~~dg~i~i~~~~~~-~~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (411)
                      +.|.++.+.+.... ....+.+.    ....+.+.|||++.|+++|+.||. |+||++.++++...+........|++++
T Consensus       360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s~~  438 (459)
T KOG0288|consen  360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITSLS  438 (459)
T ss_pred             cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEEEE
Confidence            68889999555544 34444321    334788999999999999999999 9999999999998888754444799999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEE
Q 015198          269 LSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd  289 (411)
                      |+|.|..|++++.++.+.+|.
T Consensus       439 W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  439 WNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EcCCCchhhcccCCcceEecC
Confidence            999999999999999999993

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.9e-21  Score=155.63  Aligned_cols=284  Identities=16%  Similarity=0.211  Sum_probs=216.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC-------------cceEEeecCCCCEEEEEEeccCCeEEEEecC
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF-------------KETFRRDLKSGGFRIVEMLFRCNILALVGAG  106 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  106 (411)
                      .+....|.+++|+|.|.+.|+|+ ..+++|-.....             ..++-+.-+.|...+.+.+|++.+.++++|+
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            34567899999999999999999 888887644210             0112222346778899999999999999999


Q ss_pred             CCCCCCCCeEEEEECCCCcEE-----EEEe-ecCceeEEEEcCC----eEEEE----EcCeEEEEEcCCceeeEEEeccC
Q 015198          107 DNSQYPPTKVIIWDDHQSRCI-----GEFA-FRSDVRSVKLSRD----RIVVV----LEHKIYVYSFVDLKLLHQIETLA  172 (411)
Q Consensus       107 ~d~~~~d~~i~vwd~~~~~~~-----~~~~-~~~~i~~~~~~~~----~~~~~----~dg~i~iwd~~~~~~~~~~~~~~  172 (411)
                      .|     .+|++.-++...+-     .++. |.+.|..++|-.+    +.+++    .|..|++-|-.+|+..+.+.+|.
T Consensus       109 nd-----k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght  183 (350)
T KOG0641|consen  109 ND-----KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT  183 (350)
T ss_pred             CC-----ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence            98     99999876543321     2344 8999999999643    45555    57889999999999999999988


Q ss_pred             CCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-ceEEEec--c-----ccceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198          173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINA--H-----DSHIACFTLTLDGLLLATASTRGTLIRIF  244 (411)
Q Consensus       173 ~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~--~-----~~~i~~l~~sp~g~~l~s~s~dg~~I~vw  244 (411)
                      ..+. .-++|++   .++++|+.|.+|++|+.+-. ++..+..  |     ...|.+++..|.|++|++|-.|.. ..+|
T Consensus       184 ghil-alyswn~---~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~ly  258 (350)
T KOG0641|consen  184 GHIL-ALYSWNG---AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLY  258 (350)
T ss_pred             ccEE-EEEEecC---cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEE
Confidence            7332 2345553   35557999999999998753 3444321  2     357999999999999999999999 9999


Q ss_pred             ECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccC
Q 015198          245 NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLIS  324 (411)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (411)
                      |++.++.++.+..  |...|.++.|+|...+|++++.|..|++-|++..-..                            
T Consensus       259 dirg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~----------------------------  308 (350)
T KOG0641|consen  259 DIRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH----------------------------  308 (350)
T ss_pred             EeeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccchhh----------------------------
Confidence            9999999999988  8899999999999999999999999999998754211                            


Q ss_pred             CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198          325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~  388 (411)
                                      .+|.+        -+.-+.+-...|.|.++ -.++..+.|-.+-.|.+.
T Consensus       309 ----------------el~~~--------vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  309 ----------------ELPIM--------VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ----------------cCceE--------EEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence                            12221        11112234556889987 678888889999998764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.6e-23  Score=183.03  Aligned_cols=241  Identities=19%  Similarity=0.236  Sum_probs=193.1

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...-...|+++.|-.||++||+|. .|.|+|||+.+ +.+++ .+..|...+....|++. ...+++|++|     +.++
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR-~~~ah~apv~~~~f~~~d~t~l~s~sDd-----~v~k  136 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILR-QLYAHQAPVHVTKFSPQDNTMLVSGSDD-----KVVK  136 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHH-HHhhccCceeEEEecccCCeEEEecCCC-----ceEE
Confidence            445678899999999999999999 99999999665 33333 35578888888889884 5778888887     9999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCCeEE-EE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIV-VV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      +||+.+......+. |...|.+.+|+|.... ++   .||.|++||++.. ..+.++. |..++..+.+-++  +..+++
T Consensus       137 ~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lps--gs~ias  213 (487)
T KOG0310|consen  137 YWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPS--GSLIAS  213 (487)
T ss_pred             EEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCC--CCEEEE
Confidence            99999888654565 9999999999997553 33   7999999999876 4555554 5666666655554  456776


Q ss_pred             ecCCCCeEEEEEcC-Cc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198          192 PGLQRGQVRIEHFG-LN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (411)
Q Consensus       192 ~g~~dg~i~i~~~~-~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (411)
                      +|  ...|++|+.. +. .+..+..|...|+|+++..++..|++|+-|+. |++||+.+.+.+..+.   ..++|.+++.
T Consensus       214 Ag--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~---~~~pvLsiav  287 (487)
T KOG0310|consen  214 AG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWK---YPGPVLSIAV  287 (487)
T ss_pred             cC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeee---cccceeeEEe
Confidence            55  4689999987 43 34444559999999999999999999999999 9999998888888887   6789999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          270 SPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       270 spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +|+++.++.|..+|.+.+=+...+++.
T Consensus       288 s~dd~t~viGmsnGlv~~rr~~~k~k~  314 (487)
T KOG0310|consen  288 SPDDQTVVIGMSNGLVSIRRREVKKKP  314 (487)
T ss_pred             cCCCceEEEecccceeeeehhhcccCC
Confidence            999999999999998777655555443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=7.7e-24  Score=193.77  Aligned_cols=245  Identities=15%  Similarity=0.272  Sum_probs=197.1

Q ss_pred             CCCCCeE---EEEEc-CCCCEEEEEe-CCcEEEEecCCCcce----EEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           42 VDEIELI---SVSWN-QDYGCFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        42 ~h~~~V~---~l~~s-~~g~~la~g~-dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      .|...|.   .+..+ |.+++|.+|+ ||.|++|+.......    +...++.|..++..+....++..+++++.|    
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsD----   94 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSD----   94 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCC----
Confidence            3444455   45555 4577899999 999999998753332    334456788888888888899899999988    


Q ss_pred             CCeEEEEECCCC--cEEEEEe-ecCceeEEEE-cCCeEEEE---EcCeEEEEEcCCc--eeeEEEec------c-CCCcc
Q 015198          113 PTKVIIWDDHQS--RCIGEFA-FRSDVRSVKL-SRDRIVVV---LEHKIYVYSFVDL--KLLHQIET------L-ANLRG  176 (411)
Q Consensus       113 d~~i~vwd~~~~--~~~~~~~-~~~~i~~~~~-~~~~~~~~---~dg~i~iwd~~~~--~~~~~~~~------~-~~~~~  176 (411)
                       -+|++|+...+  -++.++. |...|.|+++ .++..+++   .|+.|.+||++++  +.+..+..      . .....
T Consensus        95 -tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s  173 (735)
T KOG0308|consen   95 -TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS  173 (735)
T ss_pred             -ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence             99999998777  5667776 9999999999 77777777   7999999999877  33333211      1 22235


Q ss_pred             eEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE
Q 015198          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (411)
                      +.+++.++.+..+ ++|+.++.+++|+.. .+.+..+.+|...|.++..++||..+++++.||+ |++||+...+++.++
T Consensus       174 iYSLA~N~t~t~i-vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  174 IYSLAMNQTGTII-VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATY  251 (735)
T ss_pred             eeeeecCCcceEE-EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeE
Confidence            5667777666454 568899999998865 4667788999999999999999999999999999 999999999999999


Q ss_pred             eCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      ..  |...|+++..+|+=..+++|+.||.|+.=|+++..+
T Consensus       252 ~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~  289 (735)
T KOG0308|consen  252 IV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK  289 (735)
T ss_pred             Ee--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence            88  777899999999999999999999999999998643

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=1.1e-22  Score=169.97  Aligned_cols=285  Identities=13%  Similarity=0.187  Sum_probs=211.4

Q ss_pred             ccCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCcc------eE-------EeecCCCCEEEEEEeccC-CeEEE
Q 015198           39 FSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKE------TF-------RRDLKSGGFRIVEMLFRC-NILAL  102 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~-~~~~l  102 (411)
                      ....|.+.|+++.+.+. |+++++|+ ||.|.+||++....      +.       +..-..|.-.|..+.|-| |.-.+
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            35679999999999885 89999999 99999999975321      00       011134566677777776 55567


Q ss_pred             EecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCC---eEEEE---EcCeEEEEEcCCceeeEEEeccCCCcc
Q 015198          103 VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRD---RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRG  176 (411)
Q Consensus       103 ~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~  176 (411)
                      .+++.|     .+++|||..+-+....|+.++.|++-+++|-   .-+++   .+-.|++.|+.+|..-+.+.+|..  .
T Consensus       118 tssSFD-----htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~--~  190 (397)
T KOG4283|consen  118 TSSSFD-----HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD--G  190 (397)
T ss_pred             eccccc-----ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC--c
Confidence            777877     9999999999999999999999999999884   33444   688999999999999999999988  6


Q ss_pred             eEEEccCCCceEEEEecCCCCeEEEEEcCCc--ceE--------------EEeccccceeEEEecCCCCEEEEEcCCCeE
Q 015198          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIK--------------LINAHDSHIACFTLTLDGLLLATASTRGTL  240 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~~--------------~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~  240 (411)
                      ++++.|+|...+++++|+.||.|++|+.+..  +..              .-..|.+.+..++|+.+|.++++.+.|.. 
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r-  269 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR-  269 (397)
T ss_pred             eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc-
Confidence            7777788888899999999999999997641  222              22467788999999999999999999999 


Q ss_pred             EEEEECCCCceE-EEEeCCCCCc---ceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCC
Q 015198          241 IRIFNTVDGTRL-QEVRRGVDRA---EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHS  316 (411)
Q Consensus       241 I~vwd~~~~~~~-~~~~~~~~~~---~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (411)
                      +++|+..+|+.. ..+-...|..   .-..+. +.+...++---.++.+.++++-.++...-                  
T Consensus       270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~------------------  330 (397)
T KOG4283|consen  270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRR------------------  330 (397)
T ss_pred             eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEe------------------
Confidence            999999887532 1111110111   111122 33444455455567788888877764432                  


Q ss_pred             CCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198          317 SSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~  388 (411)
                                                            ++.+--...++++.++ ++..++..||.++.|...
T Consensus       331 --------------------------------------l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  331 --------------------------------------LSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             --------------------------------------eecccceeeEEeecCchhhhhccccCCcccccccc
Confidence                                                  2222224567778888 999999999999999764

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=1.6e-21  Score=186.44  Aligned_cols=175  Identities=8%  Similarity=0.090  Sum_probs=136.6

Q ss_pred             CeEEEEECCCCcEEEEEe-ecCceeEEEEcCC-eEEEE---EcCeEEEEEcCCce--------eeEEEeccCCCcceEEE
Q 015198          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLK--------LLHQIETLANLRGLCCL  180 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~---~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~  180 (411)
                      +.|++|+......+..+. |...|.+++|+|+ +.+++   .|+.|++||+.++.        .+..+.+|...+..  +
T Consensus        54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~s--V  131 (568)
T PTZ00420         54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI--I  131 (568)
T ss_pred             eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEE--E
Confidence            899999988877777777 8999999999996 55665   79999999997542        23456677765444  4


Q ss_pred             ccCCCceEEEEecCCCCeEEEEEcCCcc-eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC
Q 015198          181 SHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV  259 (411)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~  259 (411)
                      .++|++..++++++.|+.|+||+..... +..+. |...|.+++|+|+|.+|++++.|+. |+|||+++++.+.++.+  
T Consensus       132 af~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~~i~tl~g--  207 (568)
T PTZ00420        132 DWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQEIASSFHI--  207 (568)
T ss_pred             EECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCcEEEEEec--
Confidence            4555555555557789999999987544 34443 6678999999999999999999999 99999999999988887  


Q ss_pred             CCcce-----EEEEeCCCCCEEEEEeCCC----cEEEEEccccc
Q 015198          260 DRAEI-----YSIALSPNVQWLAVASDKG----TVHIFSLRVRV  294 (411)
Q Consensus       260 ~~~~v-----~~l~~spdg~~l~s~s~dg----~I~vwd~~~~~  294 (411)
                      |.+.+     +...|++++.+|++++.|+    +|+|||+++..
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~  251 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT  251 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC
Confidence            55443     3334668999999988774    79999998643

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.4e-22  Score=170.91  Aligned_cols=287  Identities=12%  Similarity=0.136  Sum_probs=226.2

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      +.....||.+.|+.++-......+.+++ |.+.+||.++++..+....  +|...+.++.|++.+.++++++.|     +
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh~s~~L~lTaSGD-----~  212 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT--GHTGSVNSIKFHNSGLLLLTASGD-----E  212 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec--ccccceeeEEeccccceEEEccCC-----c
Confidence            4456789999999999988888888999 9999999999977666554  888899999999999999999988     8


Q ss_pred             eEEEEEC------CC------------------------------C----cEEEEEe-ecCceeEEEEcCCeEEEE---E
Q 015198          115 KVIIWDD------HQ------------------------------S----RCIGEFA-FRSDVRSVKLSRDRIVVV---L  150 (411)
Q Consensus       115 ~i~vwd~------~~------------------------------~----~~~~~~~-~~~~i~~~~~~~~~~~~~---~  150 (411)
                      +..||..      ..                              +    .++..+. |...|.+..|-..+..++   .
T Consensus       213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW  292 (481)
T KOG0300|consen  213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW  292 (481)
T ss_pred             chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec
Confidence            8888861      11                              0    0122333 667777888877777666   7


Q ss_pred             cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCC
Q 015198          151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDG  228 (411)
Q Consensus       151 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g  228 (411)
                      |.+..+||+++++.++.+.+|.....-++-.+.  .+ |+.+.+.|.+.++|+...  ..+..|++|...|+++.|..+.
T Consensus       293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--Qr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd  369 (481)
T KOG0300|consen  293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD  369 (481)
T ss_pred             cccceeeeeccCceeccccCcchhccccccCCc--ce-EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC
Confidence            999999999999999999999886665555544  34 445678999999999875  4577899999999999998766


Q ss_pred             CEEEEEcCCCeEEEEEECCCCc-eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCC
Q 015198          229 LLLATASTRGTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPS  307 (411)
Q Consensus       229 ~~l~s~s~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~  307 (411)
                       .+++|+.|.+ |+|||+++.. .+.++.   ...+++.++.+..+..|+.--.+..|++||++.....+          
T Consensus       370 -~vVSgSDDrT-vKvWdLrNMRsplATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR----------  434 (481)
T KOG0300|consen  370 -RVVSGSDDRT-VKVWDLRNMRSPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR----------  434 (481)
T ss_pred             -ceeecCCCce-EEEeeeccccCcceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCCcccc----------
Confidence             4889999999 9999998764 566776   45689999999888888888888899999998765332          


Q ss_pred             cccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC---CEEEEEEeCCcEEE
Q 015198          308 QSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ---NTVVIVSMDGSFYR  384 (411)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dg~~~~  384 (411)
                                                        +|+.        .-+-+...+++|+|..+   ..|+++|-|-.+.-
T Consensus       435 ----------------------------------lPrt--------sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~g  472 (481)
T KOG0300|consen  435 ----------------------------------LPRT--------SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAG  472 (481)
T ss_pred             ----------------------------------CCcc--------cccccceeeeeeeccccCcccccccccccceeee
Confidence                                              1111        11122346788999766   88999999999999


Q ss_pred             EEEec
Q 015198          385 CSFDP  389 (411)
Q Consensus       385 ~~~~~  389 (411)
                      |++..
T Consensus       473 W~in~  477 (481)
T KOG0300|consen  473 WKINT  477 (481)
T ss_pred             eEecc
Confidence            98865

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.91  E-value=3.2e-23  Score=170.78  Aligned_cols=250  Identities=10%  Similarity=0.065  Sum_probs=191.4

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      ......+|.+.|+|+..+-+.++|++|+ |.+++|||+++++++....   .+..+..+.|+.++.+++...++..-..+
T Consensus        44 rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k---~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~  120 (327)
T KOG0643|consen   44 RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK---TNSPVKRVDFSFGGNLILASTDKQMGYTC  120 (327)
T ss_pred             eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee---cCCeeEEEeeccCCcEEEEEehhhcCcce
Confidence            4456789999999999999999999999 9999999999988877664   45667777788777766666555455568


Q ss_pred             eEEEEECC-------CCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce-eeEEEeccCCCcceEEEcc
Q 015198          115 KVIIWDDH-------QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSH  182 (411)
Q Consensus       115 ~i~vwd~~-------~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~  182 (411)
                      .|.++|++       ..++...+. +...++.+-|.|-+..++   .||.|.+||+++|+ .+...+.|...+  ..+.+
T Consensus       121 ~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I--nd~q~  198 (327)
T KOG0643|consen  121 FVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI--NDLQF  198 (327)
T ss_pred             EEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc--ccccc
Confidence            99999987       455566666 788999999999998888   79999999999974 455556777644  45555


Q ss_pred             CCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCe-EE------------EEEECCCC
Q 015198          183 HSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGT-LI------------RIFNTVDG  249 (411)
Q Consensus       183 ~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~-~I------------~vwd~~~~  249 (411)
                      +++..+++ +|+.|.+-++|+...-.+........+|++.+++|....++.|+.... .|            ++|++-..
T Consensus       199 s~d~T~Fi-T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e  277 (327)
T KOG0643|consen  199 SRDRTYFI-TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE  277 (327)
T ss_pred             cCCcceEE-ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH
Confidence            55656665 588999999977766544444456889999999998877776654322 11            12222223


Q ss_pred             ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      +.+..+++  |-++|++++|+|+|+..++|++||.|++.-++..
T Consensus       278 EEigrvkG--HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  278 EEIGRVKG--HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             HHhccccc--cccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence            45556677  8889999999999999999999999999877654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=2.1e-22  Score=186.16  Aligned_cols=285  Identities=12%  Similarity=0.177  Sum_probs=221.3

Q ss_pred             CCCCCeEEEEEcCC-----------CCEEEEEe-CCcEEEEecCCC--cceEEeec------------------------
Q 015198           42 VDEIELISVSWNQD-----------YGCFAAGT-SCGFRIYNCEPF--KETFRRDL------------------------   83 (411)
Q Consensus        42 ~h~~~V~~l~~s~~-----------g~~la~g~-dg~i~iw~~~~~--~~~~~~~~------------------------   83 (411)
                      -|...|+.+.--|-           ...+++++ |++|++|+++..  ..++++.+                        
T Consensus       367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~  446 (1080)
T KOG1408|consen  367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG  446 (1080)
T ss_pred             eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence            35666666655441           23577777 999999999741  12221110                        


Q ss_pred             ---------CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCC---eEEEE-
Q 015198           84 ---------KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRD---RIVVV-  149 (411)
Q Consensus        84 ---------~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~---~~~~~-  149 (411)
                               -.....+.+++.+|++..|++|..-     |+|+||++..-+....+. |...|.|+.|+..   .++++ 
T Consensus       447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~-----GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG-----GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             cccccchhhcCcccceEEEEECCCcceecccCcc-----CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh
Confidence                     1345568889999999999999988     999999999888888887 9999999999853   34555 


Q ss_pred             --EcCeEEEEEcC-CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEec-----ccccee
Q 015198          150 --LEHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINA-----HDSHIA  220 (411)
Q Consensus       150 --~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~-----~~~~i~  220 (411)
                        .|.-|++||.. +..+++++..|...++.+.|+.++-+..++.+| .|..|.+.... ......+..     ....++
T Consensus       522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscG-ADksimFr~~qk~~~g~~f~r~t~t~~ktTlY  600 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG-ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY  600 (1080)
T ss_pred             ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEecc-CchhhheehhccccCceeccccccccccceEE
Confidence              78999999994 456778889999888888888877666666644 78888874333 222222322     245789


Q ss_pred             EEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC-CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 015198          221 CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDS  299 (411)
Q Consensus       221 ~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~  299 (411)
                      .++..|..+++++++.|.. |+|||+.+|+..+.|++.. |.+....+...|.|.||++...|.++.++|+.+|++.-+.
T Consensus       601 Dm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m  679 (1080)
T KOG1408|consen  601 DMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM  679 (1080)
T ss_pred             EeeeCCCcceEEEEecccc-eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence            9999999999999999999 9999999999999998743 4467888999999999999999999999999999986433


Q ss_pred             CCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEe
Q 015198          300 SSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM  378 (411)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  378 (411)
                      .+|                                                        ...+.-+-|.++ ..|+.++.
T Consensus       680 ~GH--------------------------------------------------------sE~VTG~kF~nDCkHlISvsg  703 (1080)
T KOG1408|consen  680 TGH--------------------------------------------------------SEAVTGVKFLNDCKHLISVSG  703 (1080)
T ss_pred             cCc--------------------------------------------------------chheeeeeecccchhheeecC
Confidence            333                                                        235667889998 99999999


Q ss_pred             CCcEEEEEEec
Q 015198          379 DGSFYRCSFDP  389 (411)
Q Consensus       379 dg~~~~~~~~~  389 (411)
                      ||.++||.++.
T Consensus       704 DgCIFvW~lp~  714 (1080)
T KOG1408|consen  704 DGCIFVWKLPL  714 (1080)
T ss_pred             CceEEEEECch
Confidence            99999999985

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.4e-22  Score=175.06  Aligned_cols=286  Identities=15%  Similarity=0.164  Sum_probs=210.1

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE-EEEecCCCCCCCCCe
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTK  115 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~d~~  115 (411)
                      +......+.|++|.|+|...+|++++ |+.++||.++.........++-....+....|.|++. .+++++..     ..
T Consensus       207 Na~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-----ky  281 (514)
T KOG2055|consen  207 NAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-----KY  281 (514)
T ss_pred             ccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccc-----eE
Confidence            33445567899999999999999999 9999999998644444444445566777888888887 77777766     89


Q ss_pred             EEEEECCCCcEEEEEe----ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198          116 VIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                      ++.||+.+.+..+.-.    ....+....+++++.+++   ..|.|++....+++.+..++...   .+..+.++.++..
T Consensus       282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~  358 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKE  358 (514)
T ss_pred             EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcE
Confidence            9999998887654433    234677888999999888   68999999999999998887654   3455555567777


Q ss_pred             EEEecCCCCeEEEEEcCCcceEEEeccccce--eEEEecCCCCEEEEEcCCCeEEEEEECCC------CceEEEEeCCCC
Q 015198          189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHI--ACFTLTLDGLLLATASTRGTLIRIFNTVD------GTRLQEVRRGVD  260 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i--~~l~~sp~g~~l~s~s~dg~~I~vwd~~~------~~~~~~~~~~~~  260 (411)
                      |+++| .+|.|.+|+.+...+...-...+.|  ++++.+++|.+||+|+..|. |.|||.++      .+++..+..  -
T Consensus       359 l~~~~-~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN--L  434 (514)
T KOG2055|consen  359 LLASG-GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN--L  434 (514)
T ss_pred             EEEEc-CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--h
Confidence            77655 6889999998775443332233333  56778899999999999999 99999654      245555554  4


Q ss_pred             CcceEEEEeCCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccccc
Q 015198          261 RAEIYSIALSPNVQWLAVASD--KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFM  338 (411)
Q Consensus       261 ~~~v~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (411)
                      ...|++|+|++|+++||.++.  +..+++-.+.+-..-.                                         
T Consensus       435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFs-----------------------------------------  473 (514)
T KOG2055|consen  435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFS-----------------------------------------  473 (514)
T ss_pred             heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeec-----------------------------------------
Confidence            568999999999999987774  5568887766544221                                         


Q ss_pred             ccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198          339 RGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~  388 (411)
                                .|+..  .-+-+.+.+++|+|+ +-+++|..+|++.+|.+.
T Consensus       474 ----------NfP~~--n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  474 ----------NFPTS--NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ----------cCCCC--CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence                      00000  011145678999998 777777778999999874

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=8.5e-23  Score=171.66  Aligned_cols=212  Identities=14%  Similarity=0.222  Sum_probs=172.4

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC------------C------cEEEEEe-ecCceeEEEEcC
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ------------S------RCIGEFA-FRSDVRSVKLSR  143 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~------------~------~~~~~~~-~~~~i~~~~~~~  143 (411)
                      +..|...+.+..|+++|.++++|+.|     ..|+|.|++.            +      -.++++- |..+|+++.|+|
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD-----~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSAD-----ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCc-----ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            34678888899999999999999998     9999999762            1      1244443 889999999999


Q ss_pred             CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE----EEeccc
Q 015198          144 DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK----LINAHD  216 (411)
Q Consensus       144 ~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~----~~~~~~  216 (411)
                      ...+++   .|++|++||+......+.++.......+.+++++|.|.+|++ |.....+++++.+.....    .-..|.
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllv-gTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV-GTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEE-ecCCCceeEEeccceeEeeecCcccccc
Confidence            999888   799999999965433333333333335677788888888876 778889999877653222    124689


Q ss_pred             cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +.|+++.+++.|++.++++.||. |++||--+++++.++...+....|.+..|..+|++|++.+.|..+++|.+.++...
T Consensus       262 ~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l  340 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML  340 (430)
T ss_pred             cceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence            99999999999999999999999 99999999999999987766679999999999999999999999999999999877


Q ss_pred             CCCCC
Q 015198          297 EDSSS  301 (411)
Q Consensus       297 ~~~~~  301 (411)
                      .+..+
T Consensus       341 ~~YtG  345 (430)
T KOG0640|consen  341 KEYTG  345 (430)
T ss_pred             EEEec
Confidence            54443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=1.3e-22  Score=178.77  Aligned_cols=245  Identities=12%  Similarity=0.148  Sum_probs=186.4

Q ss_pred             ccCCCCCCeEEEEEcCCCCEE-EEEe-CCcEEEEecCCCcceEE--------eecCCCCEEEEEEeccCC-eEEEEecCC
Q 015198           39 FSDVDEIELISVSWNQDYGCF-AAGT-SCGFRIYNCEPFKETFR--------RDLKSGGFRIVEMLFRCN-ILALVGAGD  107 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~l-a~g~-dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~l~s~~~  107 (411)
                      ..-.|.+.|+.+.+.|....+ |+++ .+.|.|||..+......        ..+.+|...-..++|++. ...+++++.
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            346799999999999987655 4555 99999999875322221        123355555666788864 356777777


Q ss_pred             CCCCCCCeEEEEECCCCcE-------EEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcC--CceeeEEEeccCC
Q 015198          108 NSQYPPTKVIIWDDHQSRC-------IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFV--DLKLLHQIETLAN  173 (411)
Q Consensus       108 d~~~~d~~i~vwd~~~~~~-------~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~--~~~~~~~~~~~~~  173 (411)
                      |     +.|++||+.....       ...+. |...|..++|++....++    .|+.+.|||++  +.+..+....|..
T Consensus       199 d-----~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  199 D-----HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             C-----CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence            7     9999999765422       22333 899999999998665444    79999999999  5666777788888


Q ss_pred             CcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCC-
Q 015198          174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDG-  249 (411)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~-  249 (411)
                      ++.++.|.+..  .+++++|+.|++|.+|+.+.  .++..+.+|...|.++.|+|.. ..||+++.|+. +.|||+..- 
T Consensus       274 ~vn~~~fnp~~--~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig  350 (422)
T KOG0264|consen  274 EVNCVAFNPFN--EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIG  350 (422)
T ss_pred             ceeEEEeCCCC--CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccc
Confidence            77766666654  45666789999999998775  6788899999999999999976 48899999999 999998642 


Q ss_pred             -------------ceEEEEeCCCCCcceEEEEeCCCCCE-EEEEeCCCcEEEEEcccc
Q 015198          250 -------------TRLQEVRRGVDRAEIYSIALSPNVQW-LAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       250 -------------~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s~dg~I~vwd~~~~  293 (411)
                                   ++++.-.+  |...|..+.|+|+..+ |++.++|+.++||+....
T Consensus       351 ~eq~~eda~dgppEllF~HgG--H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGG--HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             cccChhhhccCCcceeEEecC--cccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence                         12222233  8899999999998875 678899999999999854

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=8.8e-21  Score=160.31  Aligned_cols=249  Identities=14%  Similarity=0.167  Sum_probs=187.9

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-----EcCeEEE
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----LEHKIYV  156 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-----~dg~i~i  156 (411)
                      +......+.++.|+.+|..++++++|     ..+++||..+++.++++. .+-.+..++|......+.     .|.+|+.
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~d-----Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSED-----DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCC-----CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            33456678899999999999998887     899999999999999998 566778888866554444     5889999


Q ss_pred             EEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEc
Q 015198          157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATAS  235 (411)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s  235 (411)
                      .++.+.+.++.+.+|...+..++++|-.  ..++ +++.|++|++|+.+.. +...+.....+  .++|+|+|-++|++.
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~Fl-S~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~  159 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFL-SSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALAN  159 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCC--CeEE-ecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEec
Confidence            9999999999999999976666666655  3444 5779999999998854 44444333333  478999999999998


Q ss_pred             CCCeEEEEEECCCC--ceEEEEeCC-CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCccccc
Q 015198          236 TRGTLIRIFNTVDG--TRLQEVRRG-VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTEL  312 (411)
Q Consensus       236 ~dg~~I~vwd~~~~--~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~  312 (411)
                      ..+. |++||++.-  .+..++... ......+.|.|||||++|+.++..+.+++.|--+|......+.+          
T Consensus       160 ~~~~-IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~----------  228 (311)
T KOG1446|consen  160 GSEL-IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY----------  228 (311)
T ss_pred             CCCe-EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec----------
Confidence            8888 999999864  333444432 24568999999999999999999999999999998754321111          


Q ss_pred             ccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEe-CCcEEEEEEecCC
Q 015198          313 LNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSM-DGSFYRCSFDPVH  391 (411)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~~~~~~~~  391 (411)
                                                                 .........++|+|+++++.+|+ ||++++|.+..  
T Consensus       229 -------------------------------------------~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t--  263 (311)
T KOG1446|consen  229 -------------------------------------------PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET--  263 (311)
T ss_pred             -------------------------------------------cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC--
Confidence                                                       00011224578999966666665 69999999965  


Q ss_pred             CCcEEE
Q 015198          392 GGEMLQ  397 (411)
Q Consensus       392 ~~~~~~  397 (411)
                      |.++.+
T Consensus       264 g~~v~~  269 (311)
T KOG1446|consen  264 GKKVAV  269 (311)
T ss_pred             CcEeeE
Confidence            544443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=3.4e-21  Score=162.06  Aligned_cols=240  Identities=14%  Similarity=0.152  Sum_probs=182.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      ...+.|.+|.|+|.+..|++++ ||.+++|+........  .+ .+...+.++.|.++...+.++ -|     |.|+.+|
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--~~-~~~~plL~c~F~d~~~~~~G~-~d-----g~vr~~D   81 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--KF-KHGAPLLDCAFADESTIVTGG-LD-----GQVRRYD   81 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--he-ecCCceeeeeccCCceEEEec-cC-----ceEEEEE
Confidence            3467899999999999999999 9999999998764333  33 678889999999866665554 44     9999999


Q ss_pred             CCCCcEEEEEeecCceeEEEEcCC-eEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198          121 DHQSRCIGEFAFRSDVRSVKLSRD-RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (411)
                      +.++.....-.|...|.++.+.+. +.++.  .|++|++||.+.......+....   .+.++...++  .|++ |..+.
T Consensus        82 ln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k---kVy~~~v~g~--~LvV-g~~~r  155 (323)
T KOG1036|consen   82 LNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK---KVYCMDVSGN--RLVV-GTSDR  155 (323)
T ss_pred             ecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc---eEEEEeccCC--EEEE-eecCc
Confidence            999988887789999999999974 44444  89999999998754444444332   5666666654  3443 55789


Q ss_pred             eEEEEEcCCcceEE---EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC----ceEEEEeCCCCC-------cc
Q 015198          198 QVRIEHFGLNMIKL---INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----TRLQEVRRGVDR-------AE  263 (411)
Q Consensus       198 ~i~i~~~~~~~~~~---~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~~~~-------~~  263 (411)
                      .+.+|+.+.-....   -..-+-.+.++++-|++.=++.++-||. |.+=.++..    +....|+.|...       -+
T Consensus       156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP  234 (323)
T KOG1036|consen  156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP  234 (323)
T ss_pred             eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence            99998876522211   1234567899999998888999999999 887666554    344556552111       27


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      |++|+|+|-...||+|+.||.|.+||+.+.++..
T Consensus       235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~  268 (323)
T KOG1036|consen  235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK  268 (323)
T ss_pred             eceeEeccccceEEecCCCceEEEccCcchhhhh
Confidence            9999999999999999999999999999988664

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.5e-21  Score=182.99  Aligned_cols=241  Identities=12%  Similarity=0.156  Sum_probs=193.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      -.|...-+.|+|.|+|++|.+++ ||.|++|+.......-.. +..+...+.++....+  .+++++.+     ++|.+|
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t-i~~~g~~v~~ia~~s~--~f~~~s~~-----~tv~~y   81 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET-IDISGELVSSIACYSN--HFLTGSEQ-----NTVLRY   81 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch-hhccCceeEEEeeccc--ceEEeecc-----ceEEEe
Confidence            36888899999999999999988 999999998754221111 1124444444443333  67777777     999999


Q ss_pred             ECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198          120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (411)
Q Consensus       120 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (411)
                      .+.+++.-..+. +.-++++++++.+|.+++   .|-.|++.++.+......+.+|..  .+.++.++|++.+||++ +-
T Consensus        82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a--pVl~l~~~p~~~fLAvs-s~  158 (933)
T KOG1274|consen   82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA--PVLQLSYDPKGNFLAVS-SC  158 (933)
T ss_pred             eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC--ceeeeeEcCCCCEEEEE-ec
Confidence            999888765554 788999999999999998   688999999999988899999988  56677778888899875 57


Q ss_pred             CCeEEEEEcCCcceE-EEec-------c-ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE
Q 015198          196 RGQVRIEHFGLNMIK-LINA-------H-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (411)
Q Consensus       196 dg~i~i~~~~~~~~~-~~~~-------~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (411)
                      ||.|++|+.+...+. .+.+       - ...+..++|+|+|..|+....|+. |++|+..+++....+....+...+..
T Consensus       159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~~~~  237 (933)
T KOG1274|consen  159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSKFSD  237 (933)
T ss_pred             CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccceEE
Confidence            999999998764332 2211       1 345678999999888888888999 99999999999999988767777999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          267 IALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       267 l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      ++|+|+|+|||+++.||.|.|||+++-
T Consensus       238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~  264 (933)
T KOG1274|consen  238 LQWSPNGKYIAASTLDGQILVWNVDTH  264 (933)
T ss_pred             EEEcCCCcEEeeeccCCcEEEEecccc
Confidence            999999999999999999999999983

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.1e-22  Score=165.67  Aligned_cols=247  Identities=14%  Similarity=0.150  Sum_probs=190.9

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccC--CeEEEEecCCCCCCCCC
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPT  114 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~d~  114 (411)
                      ....|++-|..+...--|++||+++ |++|+|+...+... .+..+|.+|...+..+.|..  -+.+|++++.|     |
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD-----g   80 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD-----G   80 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC-----c
Confidence            4568999999999999999999999 99999999987665 56666778888888888765  68999999998     9


Q ss_pred             eEEEEECCCCcEEEEEe---ecCceeEEEEcCCe--EEEE---EcCeEEEEEcCCc---eeeEEEeccCCCcceEEEccC
Q 015198          115 KVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCCLSHH  183 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~--~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~  183 (411)
                      .|.||.-+.++-.+...   |...|++++|.|.+  ..++   .||.|.+.+.+..   ...+....|...+..++++|.
T Consensus        81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen   81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA  160 (299)
T ss_pred             eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence            99999977775444333   89999999999864  4444   7999999988643   122334556665666666664


Q ss_pred             CC-c-----------eEEEEecCCCCeEEEEEcCC---cceEEEeccccceeEEEecCCC----CEEEEEcCCCeEEEEE
Q 015198          184 SS-T-----------SVLACPGLQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLDG----LLLATASTRGTLIRIF  244 (411)
Q Consensus       184 ~~-~-----------~~l~~~g~~dg~i~i~~~~~---~~~~~~~~~~~~i~~l~~sp~g----~~l~s~s~dg~~I~vw  244 (411)
                      .- +           +.|+ +|+.|..|+||..+.   .....+.+|.+.|+.++|.|.-    .+||+++.||+ +.||
T Consensus       161 ~~~g~~~~~~~~~~~krlv-SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIw  238 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLV-SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIW  238 (299)
T ss_pred             CCCccccccCcccccceee-ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEE
Confidence            11 1           3355 467899999999887   5556689999999999999964    47999999999 9999


Q ss_pred             ECCCC--ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          245 NTVDG--TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       245 d~~~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      -.+..  .-..++... ....++.+.||..|+.|++++.|+.|.+|.-+..
T Consensus       239 t~~~e~e~wk~tll~~-f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  239 TKDEEYEPWKKTLLEE-FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             EecCccCccccccccc-CCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            76522  111122211 5568999999999999999999999999976544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1e-22  Score=181.27  Aligned_cols=235  Identities=12%  Similarity=0.227  Sum_probs=205.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      ...-|.++.+.|||+.|++|+ -.++.|||+......++.++......+.+++.++|..+..++..|     |.|.|||+
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd-----GnI~vwDL  538 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD-----GNIAVWDL  538 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC-----CcEEEEEc
Confidence            456789999999999999999 899999999876665666665556677888899999888888777     99999999


Q ss_pred             CCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198          122 HQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       122 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (411)
                      .+...++.++ |...+.||.+++||..+.   .|++|+.||+++++.+...   .....++.+...|.+.++++ |-.++
T Consensus       539 hnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh---dF~SQIfSLg~cP~~dWlav-GMens  614 (705)
T KOG0639|consen  539 HNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH---DFSSQIFSLGYCPTGDWLAV-GMENS  614 (705)
T ss_pred             ccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh---hhhhhheecccCCCccceee-ecccC
Confidence            9999999999 999999999999998887   7999999999988766443   33446788888899899986 77889


Q ss_pred             eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEE
Q 015198          198 QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA  277 (411)
Q Consensus       198 ~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  277 (411)
                      .+.|-..++.....+.-|+..|.++.|.+.|+++++.+.|+- +..|...-|..+...+   ....|.++.+|.|.++|+
T Consensus       615 ~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyIV  690 (705)
T KOG0639|consen  615 NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYIV  690 (705)
T ss_pred             cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeecc---ccCcceeeeeccCceEEE
Confidence            999977777777888889999999999999999999999999 9999999999887776   567899999999999999


Q ss_pred             EEeCCCcEEEEEc
Q 015198          278 VASDKGTVHIFSL  290 (411)
Q Consensus       278 s~s~dg~I~vwd~  290 (411)
                      +|+.|....||.+
T Consensus       691 TGSGdkkATVYeV  703 (705)
T KOG0639|consen  691 TGSGDKKATVYEV  703 (705)
T ss_pred             ecCCCcceEEEEE
Confidence            9999998888875

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=3.7e-22  Score=177.72  Aligned_cols=244  Identities=12%  Similarity=0.088  Sum_probs=193.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcc---eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      -.|.+-|.++.++...+++.+|+.|.|+|||+.....   +...........+..+...+|+..|+.|++-     .++.
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-----stls  490 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-----STLS  490 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-----ceee
Confidence            3688889999999999999999999999999974322   1222223456778888899999988888887     9999


Q ss_pred             EEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          118 IWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       118 vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      |||+..-......+   ..-...+++.+||.++.+   .||.|.|||+.+...++.+.+|.....++.++.  +|..|- 
T Consensus       491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~--dGtklW-  567 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK--DGTKLW-  567 (705)
T ss_pred             eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC--CCceee-
Confidence            99987765443333   235677899999998887   899999999999999999999998555555554  555554 


Q ss_pred             ecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198          192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (411)
                      +|+-|.+|+.|+.+......-......|.++-++|++.+|+.|-+++. +.|... ++...+.+..  |+..|.++.|.+
T Consensus       568 TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~-skp~kyqlhl--heScVLSlKFa~  643 (705)
T KOG0639|consen  568 TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHT-SKPEKYQLHL--HESCVLSLKFAY  643 (705)
T ss_pred             cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEec-CCccceeecc--cccEEEEEEecc
Confidence            588999999998765332222234678999999999999999999999 888875 4444455555  889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccccccC
Q 015198          272 NVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       272 dg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      -|+|+++.+.|+-+..|...-|...
T Consensus       644 cGkwfvStGkDnlLnawrtPyGasi  668 (705)
T KOG0639|consen  644 CGKWFVSTGKDNLLNAWRTPYGASI  668 (705)
T ss_pred             cCceeeecCchhhhhhccCccccce
Confidence            9999999999999999998877643

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=5.9e-22  Score=176.99  Aligned_cols=207  Identities=15%  Similarity=0.178  Sum_probs=151.8

Q ss_pred             eecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc----EEEEEe--ecCceeEEEEcCCeEEEE---Ec
Q 015198           81 RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR----CIGEFA--FRSDVRSVKLSRDRIVVV---LE  151 (411)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~----~~~~~~--~~~~i~~~~~~~~~~~~~---~d  151 (411)
                      ..+.+|...|.++.+.+.|..+++|+.|     .+|++||+....    ..+.+.  ....|+++.|++.+..++   ..
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~  235 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS  235 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence            3455778888899999999999999998     999999975432    223333  467899999999876555   56


Q ss_pred             CeEEEEEcCCceeeEEE------------eccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc--ceEEEe----
Q 015198          152 HKIYVYSFVDLKLLHQI------------ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIKLIN----  213 (411)
Q Consensus       152 g~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~~~~~----  213 (411)
                      ...+++|-...+.+...            ++|...+.+.+|.|...+.+|  +++.||+++||+.+..  ..+.++    
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~Fl--T~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFL--TCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceE--EecCCCcEEEEecCCchhheeEEeeccC
Confidence            77899995443333222            234443444555555555454  5679999999997752  333333    


Q ss_pred             -ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc--eEEEEeCCCCCc--ceEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198          214 -AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRA--EIYSIALSPNVQWLAVASDKGTVHIF  288 (411)
Q Consensus       214 -~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~--~v~~l~~spdg~~l~s~s~dg~I~vw  288 (411)
                       +..-+++.++|+++|++||+|..||. |.+|+.....  ....+... |..  .|++|.||+||++|++-+.|++++||
T Consensus       314 ~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~A-H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW  391 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKDA-HLPGQDITSISFSYDGNYLLSRGFDDTLKVW  391 (641)
T ss_pred             CCcccCceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEeeec-cCCCCceeEEEeccccchhhhccCCCceeee
Confidence             33457889999999999999999999 9999975432  22233322 444  89999999999999999999999999


Q ss_pred             EccccccC
Q 015198          289 SLRVRVVG  296 (411)
Q Consensus       289 d~~~~~~~  296 (411)
                      |++..++.
T Consensus       392 DLrq~kkp  399 (641)
T KOG0772|consen  392 DLRQFKKP  399 (641)
T ss_pred             eccccccc
Confidence            99987754

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.3e-20  Score=151.99  Aligned_cols=247  Identities=12%  Similarity=0.140  Sum_probs=185.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcce---EEeecCCCCEEEEEEeccC----CeEEEEecCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKET---FRRDLKSGGFRIVEMLFRC----NILALVGAGDNS  109 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~l~s~~~d~  109 (411)
                      .....|.+.|+|.+|+|+|++||+|+ |..|++.-++.....   -..+|.-|...+..++|-.    .+.++++++.. 
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag-  161 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG-  161 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC-
Confidence            34567899999999999999999999 999998765431111   1122334555666666542    35677776552 


Q ss_pred             CCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEecc--CC---CcceEEE
Q 015198          110 QYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL--AN---LRGLCCL  180 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~--~~---~~~~~~~  180 (411)
                         |..|++-|..+|+..+.+. |.+.|.++.-- ++-.++   .|.+|++||++-..++..+...  ..   ...+.++
T Consensus       162 ---dc~iy~tdc~~g~~~~a~sghtghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav  237 (350)
T KOG0641|consen  162 ---DCKIYITDCGRGQGFHALSGHTGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV  237 (350)
T ss_pred             ---cceEEEeecCCCCcceeecCCcccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence               4788888999999999988 88988887522 334444   7999999999888888777432  11   1345667


Q ss_pred             ccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC--ceEEEEeC
Q 015198          181 SHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TRLQEVRR  257 (411)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~~~~~~~  257 (411)
                      +.+|.+++|+. |-.|....+++.+ ++.++.+..|...|.++.|+|...++++++.|.. |++-|+...  ..+..+..
T Consensus       238 ~vdpsgrll~s-g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqgdla~el~~~vv  315 (350)
T KOG0641|consen  238 AVDPSGRLLAS-GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQGDLAHELPIMVV  315 (350)
T ss_pred             EECCCcceeee-ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecccchhhcCceEEE
Confidence            77788888875 8889999996655 5788999999999999999999999999999999 999998532  11112222


Q ss_pred             CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          258 GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       258 ~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      ..|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus       316 ~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  316 AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            2378888899999999889999999999999764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.8e-22  Score=188.26  Aligned_cols=241  Identities=13%  Similarity=0.194  Sum_probs=186.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEee--cC---CCCEEEEEEeccC-CeEEEEecCCCCCCCCCeE
Q 015198           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRD--LK---SGGFRIVEMLFRC-NILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~--~~---~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i  116 (411)
                      -+....+|+.+++-..+++++...++||.+.+........  +.   .-...+..+.|.. ...++++++..     |.|
T Consensus        38 ~k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n-----G~i  112 (839)
T KOG0269|consen   38 LKAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN-----GVI  112 (839)
T ss_pred             cccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC-----CcE
Confidence            3566788899999999999998888999887543322221  11   1222334455663 34678888877     999


Q ss_pred             EEEECCC---CcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198          117 IIWDDHQ---SRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       117 ~vwd~~~---~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                      .+||+..   .+.+..+. |...+.++.|++....++    .||.|++||++..+....+......+..+.|++.+...+
T Consensus       113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F  192 (839)
T KOG0269|consen  113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKF  192 (839)
T ss_pred             EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceE
Confidence            9999877   45555666 999999999998766555    799999999999888888888777788888888875433


Q ss_pred             EEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce--EEEEeCCCCCcce
Q 015198          189 LACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR--LQEVRRGVDRAEI  264 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~~~~~v  264 (411)
                       + ++.+.|.+++|+.+.  ++...+.+|.++|.++.|+|++.+||+|+.|+. |+|||..+++.  +.++.   ...+|
T Consensus       193 -~-s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tiapv  266 (839)
T KOG0269|consen  193 -A-SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIAPV  266 (839)
T ss_pred             -E-EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---eccee
Confidence             3 467899999999875  567788999999999999999999999999999 99999876543  44444   45689


Q ss_pred             EEEEeCCCCCE-EEEEe--CCCcEEEEEccccc
Q 015198          265 YSIALSPNVQW-LAVAS--DKGTVHIFSLRVRV  294 (411)
Q Consensus       265 ~~l~~spdg~~-l~s~s--~dg~I~vwd~~~~~  294 (411)
                      .++.|-|+.++ ||+++  .|-.|+|||++.+-
T Consensus       267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY  299 (839)
T KOG0269|consen  267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY  299 (839)
T ss_pred             eeeeeccCccchhhhhhccccceEEEEeecccc
Confidence            99999998764 56555  46789999998764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=1.8e-21  Score=163.70  Aligned_cols=231  Identities=16%  Similarity=0.234  Sum_probs=181.3

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      .+...-.|..++.+++|.++. .+++|+ ||.|+++|+++......   ..|...+.++.+.+....+++|+.|     +
T Consensus        46 ~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~i---gth~~~i~ci~~~~~~~~vIsgsWD-----~  116 (323)
T KOG1036|consen   46 SLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQI---GTHDEGIRCIEYSYEVGCVISGSWD-----K  116 (323)
T ss_pred             hhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEecCCcceee---ccCCCceEEEEeeccCCeEEEcccC-----c
Confidence            444566799999999999854 566777 99999999998655432   3677888888888877888999998     9


Q ss_pred             eEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCC--cceEEEccCCCceEEEE
Q 015198          115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANL--RGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~  191 (411)
                      +|++||.+....+..+.....|.++....+..++. .+..|.+||+++.....+.....-.  +.++++-|+..|  .++
T Consensus       117 ~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG--y~~  194 (323)
T KOG1036|consen  117 TIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG--YVV  194 (323)
T ss_pred             cEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc--eEE
Confidence            99999988877777777777999999999888886 8999999999887655433332222  234455554444  333


Q ss_pred             ecCCCCeEEEEEcC-C----cceEEEeccc---------cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          192 PGLQRGQVRIEHFG-L----NMIKLINAHD---------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       192 ~g~~dg~i~i~~~~-~----~~~~~~~~~~---------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                       ++-||.|.+...+ .    .....|+.|.         -+|++|+|+|-...|+||+.||. |.+||+.+.+.+..+..
T Consensus       195 -sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~~~  272 (323)
T KOG1036|consen  195 -SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQLAK  272 (323)
T ss_pred             -EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcchhhhhhccC
Confidence             6689999993332 2    3445566664         37999999999999999999999 99999999999988887


Q ss_pred             CCCCcceEEEEeCCCCCEEEEEeC
Q 015198          258 GVDRAEIYSIALSPNVQWLAVASD  281 (411)
Q Consensus       258 ~~~~~~v~~l~~spdg~~l~s~s~  281 (411)
                        .+..|..++|+.||..||+++.
T Consensus       273 --~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  273 --YETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             --CCCceEEEEeccCCCeEEEEec
Confidence              5678999999999999999874

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=1.1e-22  Score=174.36  Aligned_cols=248  Identities=12%  Similarity=0.163  Sum_probs=192.8

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ...+..|.+.|..|++.. +..|.+|.|.+|+.|.++..  .... + .+...+..+..+.....+++++       ..|
T Consensus       102 ~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~--p~~t-i-lg~s~~~gIdh~~~~~~FaTcG-------e~i  169 (433)
T KOG0268|consen  102 IRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP--PLHT-I-LGKSVYLGIDHHRKNSVFATCG-------EQI  169 (433)
T ss_pred             hheeecccCceeeEEecc-cceEEecCCcceeeeeccCC--ccee-e-eccccccccccccccccccccC-------cee
Confidence            345678999999999988 55566666999999998752  1222 2 3445556666666677888877       579


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      .|||.....++..+. .-..|.++.|+|-...++    .|+.|.+||++++.+++.+.....   .-.++|+|+. +.++
T Consensus       170 ~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPea-fnF~  245 (433)
T KOG0268|consen  170 DIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEA-FNFV  245 (433)
T ss_pred             eecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecc---ccceecCccc-ccee
Confidence            999999999999999 667899999999876655    799999999999988877754432   2334555543 4445


Q ss_pred             ecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198          192 PGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (411)
                      +|++|..++.++...  .++....+|...|..++|+|.|+.+++|+.|.+ |+||..+.+.....+... --..|.++.|
T Consensus       246 ~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYhtk-RMq~V~~Vk~  323 (433)
T KOG0268|consen  246 AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHTK-RMQHVFCVKY  323 (433)
T ss_pred             eccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhHh-hhheeeEEEE
Confidence            688999999966543  677788999999999999999999999999999 999999877654333221 2246999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198          270 SPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (411)
Q Consensus       270 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~  302 (411)
                      |.|.+++++|++|+.|++|.-...++...++..
T Consensus       324 S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~r  356 (433)
T KOG0268|consen  324 SMDSKYIISGSDDGNVRLWKAKASEKLGVITPR  356 (433)
T ss_pred             eccccEEEecCCCcceeeeecchhhhcCCCChh
Confidence            999999999999999999998887776544443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=2.9e-21  Score=161.97  Aligned_cols=228  Identities=16%  Similarity=0.167  Sum_probs=175.9

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEecc--CCeEEEEecCCCCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR--CNILALVGAGDNSQYPPT  114 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~d~  114 (411)
                      .....|.++|.+++|+.||..+++|+ |+.+++||+.+.+ .....  .|...+..+.|-  .....|++|+.|     .
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWD-----K  137 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWD-----K  137 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeee--ecccceeEEEEecCCCcceeEecccc-----c
Confidence            45668999999999999999999999 9999999999864 44444  445555555554  456699999999     9


Q ss_pred             eEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceee-EEEecc-CCCcceEEEccCCCceEEEE
Q 015198          115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLL-HQIETL-ANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~  191 (411)
                      +|+.||++...++.++..++.++++..-..-..++ .+..|.+|+++.+... +.+... ...+.++++..+.++.  +.
T Consensus       138 TlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~--al  215 (347)
T KOG0647|consen  138 TLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF--AL  215 (347)
T ss_pred             ceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce--Ee
Confidence            99999999999999999999999998877666666 8999999999765322 222211 1112445555565554  33


Q ss_pred             ecCCCCeEEEEEc-CC--cceEEEecccc---------ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC
Q 015198          192 PGLQRGQVRIEHF-GL--NMIKLINAHDS---------HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV  259 (411)
Q Consensus       192 ~g~~dg~i~i~~~-~~--~~~~~~~~~~~---------~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~  259 (411)
                       |+-+|.+.|-.. ..  +.-..|+.|+.         .|++|+|+|....|++++.||. +.+||-.....+++.+.  
T Consensus       216 -GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s~~--  291 (347)
T KOG0647|consen  216 -GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTSET--  291 (347)
T ss_pred             -eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhccCc--
Confidence             778999999333 32  44556677763         5788999999999999999999 99999877777777666  


Q ss_pred             CCcceEEEEeCCCCCEEEEE
Q 015198          260 DRAEIYSIALSPNVQWLAVA  279 (411)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~  279 (411)
                      |..+|++..|+.+|.++|-+
T Consensus       292 ~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  292 HPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CCCccceeEecCCCCEEEEE
Confidence            88899999999999988765

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.9e-21  Score=163.92  Aligned_cols=277  Identities=13%  Similarity=0.159  Sum_probs=200.9

Q ss_pred             eEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        47 V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      -.|+.|++.|.+||+|. +|.|.|||+.+....  ..+..|...+.+++|++++..|++++.|     ..|.+||+..|.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--r~lsaH~~pi~sl~WS~dgr~LltsS~D-----~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--RMLSAHVRPITSLCWSRDGRKLLTSSRD-----WSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh--hhhhccccceeEEEecCCCCEeeeecCC-----ceeEEEeccCCC
Confidence            68999999999999999 999999999986632  2355788899999999999999999998     999999999999


Q ss_pred             EEEEEeecCceeEEEEcCCe--EEEE--EcCeEEEEEcCCceeeEEEecc-CC--CcceEEEccCCCceEEEEecCCCCe
Q 015198          126 CIGEFAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVDLKLLHQIETL-AN--LRGLCCLSHHSSTSVLACPGLQRGQ  198 (411)
Q Consensus       126 ~~~~~~~~~~i~~~~~~~~~--~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~g~~dg~  198 (411)
                      +++.+.+..+|....|+|..  +.++  .+..-.+.++..++.. .+... ..  .....+-.+++.|+++++ |...|.
T Consensus        99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIit-GtsKGk  176 (405)
T KOG1273|consen   99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIIT-GTSKGK  176 (405)
T ss_pred             ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEE-ecCcce
Confidence            99999999999999999854  3444  4555555565542211 11111 11  111122246777888765 778999


Q ss_pred             EEEEE-cCCcceEEEeccc-cceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-------ce--EEEEeCCCCCcceEEE
Q 015198          199 VRIEH-FGLNMIKLINAHD-SHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-------TR--LQEVRRGVDRAEIYSI  267 (411)
Q Consensus       199 i~i~~-~~~~~~~~~~~~~-~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-------~~--~~~~~~~~~~~~v~~l  267 (411)
                      +.+++ .+.+++..++-.. ..|..+.|+..|++|+.-+.|.. ||.|+++.-       +.  .+.+..-..+..-.++
T Consensus       177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv-IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c  255 (405)
T KOG1273|consen  177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV-IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC  255 (405)
T ss_pred             EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce-EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence            99854 4456677666555 78999999999999999999999 999997621       11  1122211122345678


Q ss_pred             EeCCCCCEEEEEeCC-CcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccc
Q 015198          268 ALSPNVQWLAVASDK-GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF  346 (411)
Q Consensus       268 ~~spdg~~l~s~s~d-g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (411)
                      +|+.+|.+++.++.. ..++||.-..|.-.+-                                                
T Consensus       256 cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI------------------------------------------------  287 (405)
T KOG1273|consen  256 CFSGDGEYVCAGSARAHALYIWEKSIGSLVKI------------------------------------------------  287 (405)
T ss_pred             eecCCccEEEeccccceeEEEEecCCcceeee------------------------------------------------
Confidence            999999999887753 4699999888864321                                                


Q ss_pred             ccccceEEEEeCC-CceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          347 SSEWSFAQFHIPE-VTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       347 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                              ++-+. .....+.|.+-..+++.-..|.+|||...-
T Consensus       288 --------LhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~  323 (405)
T KOG1273|consen  288 --------LHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ  323 (405)
T ss_pred             --------ecCCchhheeecccccceeeeeeccCCceEEEEeec
Confidence                    11111 223457788877777777899999997763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=8.6e-20  Score=165.85  Aligned_cols=226  Identities=13%  Similarity=0.107  Sum_probs=155.9

Q ss_pred             CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEE-EecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (411)
Q Consensus        57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~  134 (411)
                      ..+++++ |+.+++||+++.+......  . ...+..+.|++++..+ +++..+     +.|++||+.+++.+..+....
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--~-~~~~~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~   73 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFP--V-GQRPRGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSGP   73 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEE--C-CCCCCceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCCC
Confidence            4677777 9999999998765444332  2 2234567888887644 566665     999999999998887776445


Q ss_pred             ceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcce-
Q 015198          135 DVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI-  209 (411)
Q Consensus       135 ~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-  209 (411)
                      .+..+.++|++..++    .++.|++||+++.+.+..+.....   ...+.+++++.+++++......+.+|+...... 
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~  150 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE---PEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV  150 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC---cceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence            567889999987654    478999999998887777753322   234556667777776543333455566554332 


Q ss_pred             EEEeccccceeEEEecCCCCEEEEE-cCCCeEEEEEECCCCceEEEEeCCC---C--CcceEEEEeCCCCCEEEE-EeCC
Q 015198          210 KLINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEVRRGV---D--RAEIYSIALSPNVQWLAV-ASDK  282 (411)
Q Consensus       210 ~~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~~~~~---~--~~~v~~l~~spdg~~l~s-~s~d  282 (411)
                      ..+. .......++|+|+|++|+++ ..++. |++||+.+++.+..+....   +  ......++|+|+++++++ .+.+
T Consensus       151 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~  228 (300)
T TIGR03866       151 DNVL-VDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA  228 (300)
T ss_pred             EEEE-cCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence            2222 33455789999999988654 46888 9999999998777664211   1  112356889999998654 3456


Q ss_pred             CcEEEEEcccccc
Q 015198          283 GTVHIFSLRVRVV  295 (411)
Q Consensus       283 g~I~vwd~~~~~~  295 (411)
                      +.|.+||+++++.
T Consensus       229 ~~i~v~d~~~~~~  241 (300)
T TIGR03866       229 NRVAVVDAKTYEV  241 (300)
T ss_pred             CeEEEEECCCCcE
Confidence            6899999987653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.2e-20  Score=171.10  Aligned_cols=243  Identities=14%  Similarity=0.196  Sum_probs=195.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCC-CEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSG-GFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      .-....|.++||+.+.+.||++. +|.|.||++.. .......++++ ...+-.++|.+.+.++.++..      |.|..
T Consensus        22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~s------g~i~E   94 (691)
T KOG2048|consen   22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLS------GSITE   94 (691)
T ss_pred             eeeccceEEEEEeccCCceeeeccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCC------ceEEE
Confidence            34578899999999999999999 99999999987 44444444443 455667888877776666554      99999


Q ss_pred             EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      ||+.+++.+..+. ..+.|++++.+|.+..++   .||.++.++...++.............++++++++++..|+. |+
T Consensus        95 wDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~-Gs  173 (691)
T KOG2048|consen   95 WDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG-GS  173 (691)
T ss_pred             EecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe-cc
Confidence            9999999999998 789999999999887776   789888888888777665544444457899999999877764 88


Q ss_pred             CCCeEEEEEcCCcc-eEE----Ee----ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          195 QRGQVRIEHFGLNM-IKL----IN----AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       195 ~dg~i~i~~~~~~~-~~~----~~----~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                      .||.|++|+..... +..    +.    ....-|+++.|-.++ .|++|...|. |.+||...+.+++.+..  |.+.|.
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~adVl  249 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HDADVL  249 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hhccee
Confidence            99999999876533 221    11    123357788887666 6899999999 99999999999999888  888999


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      +++..+++.++++++.|+.|.-|...+++.
T Consensus       250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             EEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            999999999999999999999888877753

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.88  E-value=1.2e-20  Score=165.44  Aligned_cols=240  Identities=12%  Similarity=0.134  Sum_probs=197.5

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....||...|+.+.|+|+...+++++ |..|+||...........  ..|...+..+..++++.++++++.|     ++.
T Consensus       255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~--~~h~~~V~~ls~h~tgeYllsAs~d-----~~w  327 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS--RPHEEPVTGLSLHPTGEYLLSASND-----GTW  327 (506)
T ss_pred             hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc--ccccccceeeeeccCCcEEEEecCC-----ceE
Confidence            45789999999999999999999999 999999998765433333  3678888889999999999999998     999


Q ss_pred             EEEECCCCcEEEEEeec---CceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          117 IIWDDHQSRCIGEFAFR---SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      .+.|+.++..+....+.   -.+++.+|+|||.+++   .|+.|++||+..+..+..|.+|..++  .+++++.+|.+|+
T Consensus       328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v--k~i~FsENGY~La  405 (506)
T KOG0289|consen  328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV--KAISFSENGYWLA  405 (506)
T ss_pred             EEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce--eEEEeccCceEEE
Confidence            99999999998888764   4589999999999999   79999999999999899999988855  4556666778887


Q ss_pred             EecCCCCeEEEEEcCC-cceEEEecc-ccceeEEEecCCCCEEEEEcCCCeEEEEEECC--CCceEEEEeCCCCCcceEE
Q 015198          191 CPGLQRGQVRIEHFGL-NMIKLINAH-DSHIACFTLTLDGLLLATASTRGTLIRIFNTV--DGTRLQEVRRGVDRAEIYS  266 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~-~~~~~~~~~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~--~~~~~~~~~~~~~~~~v~~  266 (411)
                      + +.+|+.|++|+.+. +..+.+... ..++.++.|.+.|.+|+.++.+=. |++++-.  ...++..+..  |.+..+.
T Consensus       406 t-~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~-Vy~~~k~~k~W~~~~~~~~--~sg~st~  481 (506)
T KOG0289|consen  406 T-AADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ-VYICKKKTKSWTEIKELAD--HSGLSTG  481 (506)
T ss_pred             E-EecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE-EEEEecccccceeeehhhh--cccccce
Confidence            6 55899999998765 444444432 347999999999999999988866 6666633  3455555555  6778899


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEc
Q 015198          267 IALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       267 l~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                      +.|..+.+++++++.|..++++.+
T Consensus       482 v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  482 VRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeecccceEEeeccchhheEEeec
Confidence            999999999999999999988865

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.5e-20  Score=158.00  Aligned_cols=246  Identities=17%  Similarity=0.252  Sum_probs=174.5

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEE--eecCCCCEEEEEEeccC--CeEEEEecCCCCCCCC
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR--RDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPP  113 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~d  113 (411)
                      ...+|.+-|.++.|.+-|+.+|+++ |++|+|||.+.....+.  ...+.|...+..+.|.+  =|.++++++.|     
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D-----   82 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD-----   82 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC-----
Confidence            4678999999999999999999999 99999999754333333  23346777777777653  47899999998     


Q ss_pred             CeEEEEECCC------C---cEEEEEe-ecCceeEEEEcCC--eEEEE---EcCeEEEEEcCCc------eeeEEEe---
Q 015198          114 TKVIIWDDHQ------S---RCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDL------KLLHQIE---  169 (411)
Q Consensus       114 ~~i~vwd~~~------~---~~~~~~~-~~~~i~~~~~~~~--~~~~~---~dg~i~iwd~~~~------~~~~~~~---  169 (411)
                      +++.||.-..      +   ....++. ....|++++|.|.  |..++   .||.++||+.-+.      .+.+++.   
T Consensus        83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~  162 (361)
T KOG2445|consen   83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI  162 (361)
T ss_pred             CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence            9999998311      1   1122333 5789999999985  44444   7999999987432      2233332   


Q ss_pred             --ccCCCcceEEEccCCC---ceEEEEecCCC-----CeEEEEEcCC-----cceEEEeccccceeEEEecCCC----CE
Q 015198          170 --TLANLRGLCCLSHHSS---TSVLACPGLQR-----GQVRIEHFGL-----NMIKLINAHDSHIACFTLTLDG----LL  230 (411)
Q Consensus       170 --~~~~~~~~~~~~~~~~---~~~l~~~g~~d-----g~i~i~~~~~-----~~~~~~~~~~~~i~~l~~sp~g----~~  230 (411)
                        ...+.....|+++++.   ..+||+ |+.+     +.++||....     ..+..+.+|..+|+.|+|.|+-    .+
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~  241 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL  241 (361)
T ss_pred             CCcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence              0111123344555432   234554 5444     3777765543     2355667999999999999963    47


Q ss_pred             EEEEcCCCeEEEEEECCCC--------------------ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198          231 LATASTRGTLIRIFNTVDG--------------------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       231 l~s~s~dg~~I~vwd~~~~--------------------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                      ||+++.||  |+||.+...                    +.+..+..  |.+.|+.+.|+-.|..|++.+.||.|++|..
T Consensus       242 lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~--H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  242 LAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD--HNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             EEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC--CCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            99999998  999998631                    12333444  8889999999999999999999999999987


Q ss_pred             cccc
Q 015198          291 RVRV  294 (411)
Q Consensus       291 ~~~~  294 (411)
                      .-.+
T Consensus       318 ny~n  321 (361)
T KOG2445|consen  318 NYNN  321 (361)
T ss_pred             hhhh
Confidence            6543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=2.9e-20  Score=157.33  Aligned_cols=240  Identities=15%  Similarity=0.202  Sum_probs=170.3

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCcEEEEecCCC------------cceEEeecCCCCEEEEEEec-------cCCeEEEEec
Q 015198           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPF------------KETFRRDLKSGGFRIVEMLF-------RCNILALVGA  105 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~------------~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~s~  105 (411)
                      -...+.|+|||..|++-+ |+.+++|++...            .+...... .....+....|       .|+..++++.
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeec
Confidence            456789999999999999 999999998421            11111222 22333444433       3677788888


Q ss_pred             CCCCCCCCCeEEEEECCCCcEEEEEe---ec---CceeEEEEcCCeEEEE--EcCeEEEEEc-CCceeeEEEec--c--C
Q 015198          106 GDNSQYPPTKVIIWDDHQSRCIGEFA---FR---SDVRSVKLSRDRIVVV--LEHKIYVYSF-VDLKLLHQIET--L--A  172 (411)
Q Consensus       106 ~~d~~~~d~~i~vwd~~~~~~~~~~~---~~---~~i~~~~~~~~~~~~~--~dg~i~iwd~-~~~~~~~~~~~--~--~  172 (411)
                      +.+     .-|++||..+|+....+.   |.   ....+++|+|||..++  ....|++||+ +.|..-..+..  +  .
T Consensus       130 sr~-----~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  130 SRD-----QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             ccc-----CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccc
Confidence            887     999999999999888776   43   3456899999998887  7899999999 55543322211  1  1


Q ss_pred             C-CcceEEEccCCCce-EEEEecCCCCeEEEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC
Q 015198          173 N-LRGLCCLSHHSSTS-VLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (411)
Q Consensus       173 ~-~~~~~~~~~~~~~~-~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (411)
                      . .-.+.+++++|-.. .++ .|+....+-|+.. ...++..+-+|.+.|+.+.|.++|+.|++|......|..||++.-
T Consensus       205 gq~giisc~a~sP~~~~~~a-~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLA-VGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             cccceeeeeeccCCCCccee-eecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            1 11234555555444 444 4778888888544 456788888999999999999999999998864433999999864


Q ss_pred             -ceEEEEeCCCCCc-ceEE--EEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          250 -TRLQEVRRGVDRA-EIYS--IALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       250 -~~~~~~~~~~~~~-~v~~--l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                       ..+..+.+  |.. .-..  ....|++++|++|+.||.|++||++...
T Consensus       284 ~~pv~~L~r--hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  284 RDPVYALER--HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             cchhhhhhh--hccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence             45666666  322 2233  4456899999999999999999999843

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=2.4e-19  Score=162.94  Aligned_cols=238  Identities=13%  Similarity=0.097  Sum_probs=171.5

Q ss_pred             CCeEEEEEcCCCCEEE-EEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEE-EecCCCCCCCCCeEEEEEC
Q 015198           45 IELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la-~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~~i~vwd~  121 (411)
                      ..+.+++|+|+++.++ ++. ++.|++||..+.+......  .+ .....+.+++++..+ +++..+     +.|++||+
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~-~~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~  102 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--SG-PDPELFALHPNGKILYIANEDD-----NLVTVIDI  102 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--CC-CCccEEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence            3467899999999774 555 8999999998755433222  22 223456788877644 555555     89999999


Q ss_pred             CCCcEEEEEeecCceeEEEEcCCeEEEE---Ec-CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE-HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       122 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (411)
                      .+++.+..+.....+.+++|+|++.+++   .+ ..+++||.++++....+.....   ...+.+++++..+++++..++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~  179 (300)
T TIGR03866       103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---PRFAEFTADGKELWVSSEIGG  179 (300)
T ss_pred             CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC---ccEEEECCCCCEEEEEcCCCC
Confidence            9988888877666678999999998887   23 4578889988877665543322   234555666777766666789


Q ss_pred             eEEEEEcCCc-ceEEEeccc-----c--ceeEEEecCCCCEEEEE-cCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198          198 QVRIEHFGLN-MIKLINAHD-----S--HIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       198 ~i~i~~~~~~-~~~~~~~~~-----~--~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (411)
                      .|++|+.... .+..+..+.     .  ....++|+|++++++.+ +.++. |.+||+++++.+..+.   +...+.+++
T Consensus       180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~---~~~~~~~~~  255 (300)
T TIGR03866       180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLL---VGQRVWQLA  255 (300)
T ss_pred             EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEE---eCCCcceEE
Confidence            9999887653 334443221     1  23468899999986554 45667 9999999988876654   234689999


Q ss_pred             eCCCCCEEEEE-eCCCcEEEEEccccccCC
Q 015198          269 LSPNVQWLAVA-SDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       269 ~spdg~~l~s~-s~dg~I~vwd~~~~~~~~  297 (411)
                      |+|+|++|+++ ..+|.|++||+++++...
T Consensus       256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~  285 (300)
T TIGR03866       256 FTPDEKYLLTTNGVSNDVSVIDVAALKVIK  285 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence            99999999876 468999999999988654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=1.7e-20  Score=165.67  Aligned_cols=235  Identities=14%  Similarity=0.181  Sum_probs=182.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      .+|...|.+++.++||+|||+|. |..|.||+.++.+.+..  +.+|...|..+.|.....-+.+++.|     +.|++|
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~D-----rsvkvw  271 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASAD-----RSVKVW  271 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeecC-----CceEEE
Confidence            48999999999999999999999 99999999998765544  45888899999998777777777777     999999


Q ss_pred             ECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198          120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (411)
Q Consensus       120 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (411)
                      ++.....+.++- |...|.+|....-++.+.   .|.++++|++.. +..-.+.++...+.+++|--+.   .++ +|+.
T Consensus       272 ~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~---Hfv-sGSd  346 (479)
T KOG0299|consen  272 SIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE---HFV-SGSD  346 (479)
T ss_pred             ehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc---cee-eccC
Confidence            998888777765 999999999887777776   799999999944 3333556666656666665543   344 5999


Q ss_pred             CCeEEEEEcCC-cceEEEe-cc-----------ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC----ceEEEEeCC
Q 015198          196 RGQVRIEHFGL-NMIKLIN-AH-----------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----TRLQEVRRG  258 (411)
Q Consensus       196 dg~i~i~~~~~-~~~~~~~-~~-----------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~  258 (411)
                      +|.|.+|.... +++.... +|           ..+|++++..|...++|+|+.+|. |++|-+..+    .++..+.  
T Consensus       347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls--  423 (479)
T KOG0299|consen  347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS--  423 (479)
T ss_pred             CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc--
Confidence            99999998654 3333321 12           238999999999999999999999 999999887    3444444  


Q ss_pred             CCCcceEEEEeCCCCCEEEEEe-CCCcEEEEEcc
Q 015198          259 VDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLR  291 (411)
Q Consensus       259 ~~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~  291 (411)
                       ..+.|++|+|+++|++|++|. ....+-=|-..
T Consensus       424 -~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  424 -LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             -cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence             567899999999999766653 33344444433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.3e-20  Score=172.87  Aligned_cols=265  Identities=10%  Similarity=0.130  Sum_probs=210.6

Q ss_pred             CCCCCCCccCcccCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEec-
Q 015198           18 GSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLF-   95 (411)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-   95 (411)
                      +.-.-|.....+..+..+-...++.|.+.|+.+....+++.|++++ |-+|++|+...........+..|...+.++++ 
T Consensus        47 g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~  126 (735)
T KOG0308|consen   47 GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI  126 (735)
T ss_pred             ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeec
Confidence            3334455555555555555667889999999999999999999999 99999999987543344446688899999998 


Q ss_pred             cCCeEEEEecCCCCCCCCCeEEEEECCCCc--EEEEEe----------ecCceeEEEEcCCeEEEE---EcCeEEEEEcC
Q 015198           96 RCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA----------FRSDVRSVKLSRDRIVVV---LEHKIYVYSFV  160 (411)
Q Consensus        96 ~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~--~~~~~~----------~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~  160 (411)
                      ..+...+++|+-|     +.|.+||++++.  .+..+.          +...|++++.++.+..++   ..+.+++||.+
T Consensus       127 ak~~~lvaSgGLD-----~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr  201 (735)
T KOG0308|consen  127 AKNNELVASGGLD-----RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR  201 (735)
T ss_pred             ccCceeEEecCCC-----ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccc
Confidence            7888999999998     999999999873  232221          467899999999998888   57889999999


Q ss_pred             CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCe
Q 015198          161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGT  239 (411)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~  239 (411)
                      +++.+..+.+|...+  .++-.+++|..+++ ++.||+|++|+... +++.++..|...|+++..+|+-..+++|+.||.
T Consensus       202 t~~kimkLrGHTdNV--r~ll~~dDGt~~ls-~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~  278 (735)
T KOG0308|consen  202 TCKKIMKLRGHTDNV--RVLLVNDDGTRLLS-ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN  278 (735)
T ss_pred             cccceeeeeccccce--EEEEEcCCCCeEee-cCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence            999999999998844  45555566666665 67899999999875 678889999999999999999999999999999


Q ss_pred             EEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          240 LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       240 ~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                       |..=|+++......+..  ...+|..+..+...+-+-+++.|+.|+-|...-.
T Consensus       279 -i~~Tdl~n~~~~tlick--~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  279 -IYRTDLRNPAKSTLICK--EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             -EEecccCCchhheEeec--CCCchhhhhhccccCCceeeeccccceecCCccc
Confidence             99999988543333333  4557888888865555677888999999987644

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.2e-20  Score=166.94  Aligned_cols=235  Identities=10%  Similarity=0.108  Sum_probs=191.3

Q ss_pred             CEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ec
Q 015198           57 GCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FR  133 (411)
Q Consensus        57 ~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~  133 (411)
                      ++++++.  ...+.+|.+.+....... + --+..+.++.-++++.+++.+...     +.|++|.+.+|..+..+. |-
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~-~-v~Pg~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~~aHY  123 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQY-I-VLPGPVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVLSAHY  123 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhh-c-ccccceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHHHhhc
Confidence            4777777  667899998764443311 1 345567888889999999998766     999999999999998887 99


Q ss_pred             CceeEEEEcCCeEEEE---EcCeEEEEEcC---------CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE
Q 015198          134 SDVRSVKLSRDRIVVV---LEHKIYVYSFV---------DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI  201 (411)
Q Consensus       134 ~~i~~~~~~~~~~~~~---~dg~i~iwd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i  201 (411)
                      ..|+++.|+.|+.+++   .||.|.+|.+.         +-+.++.+..|.-++..+.+.+.+-...+++ .+.|.++++
T Consensus       124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T-aS~D~t~k~  202 (476)
T KOG0646|consen  124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYT-ASEDRTIKL  202 (476)
T ss_pred             cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEE-ecCCceEEE
Confidence            9999999999999998   79999999872         3467788888888888777777765556654 669999999


Q ss_pred             EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC----------------CceEEEEeCCCCCcceE
Q 015198          202 EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD----------------GTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       202 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------------~~~~~~~~~~~~~~~v~  265 (411)
                      |+.....+..--.....+.+++++|-++.+++|+.+|. |.+.++..                +..+..+.++.....|+
T Consensus       203 wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT  281 (476)
T KOG0646|consen  203 WDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT  281 (476)
T ss_pred             EEeccceeeEEEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence            99987766555567788999999999999999999999 98887643                23455666743445999


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 015198          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS  300 (411)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~  300 (411)
                      |++++-||.+|++|+.||.|.|||+.+.++.+.+.
T Consensus       282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             EEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            99999999999999999999999999999887655

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.8e-19  Score=152.10  Aligned_cols=262  Identities=10%  Similarity=0.082  Sum_probs=187.8

Q ss_pred             EEEEEe-CCcEEEEecCCCc------ceE----EeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcE
Q 015198           58 CFAAGT-SCGFRIYNCEPFK------ETF----RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (411)
Q Consensus        58 ~la~g~-dg~i~iw~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~  126 (411)
                      .|++|+ ...|.=++++...      ...    ...++.|...+.+++.  ++.++++|+.|     .+|+|||+.+...
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssD-----etI~IYDm~k~~q   75 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSD-----ETIHIYDMRKRKQ   75 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCC-----CcEEEEeccchhh
Confidence            356666 6666556554322      111    1122455555665544  57889999998     9999999999988


Q ss_pred             EEEEe-ecCceeEEEEcCCe---EEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEE
Q 015198          127 IGEFA-FRSDVRSVKLSRDR---IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVR  200 (411)
Q Consensus       127 ~~~~~-~~~~i~~~~~~~~~---~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~  200 (411)
                      +..+- |.+.|+++.|.+..   .++.  .||.|.+|+....+++..++.|...++.++++|++  ++-+ +-+.|+.++
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLAL-sVg~D~~lr  152 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG--KLAL-SVGGDQVLR  152 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC--ceEE-EEcCCceee
Confidence            88876 99999999999876   3444  89999999999999999999999876666666665  4433 445899999


Q ss_pred             EEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEe
Q 015198          201 IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS  280 (411)
Q Consensus       201 i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  280 (411)
                      +|+.-.........-....+.+.|+|.|.+++.+..++  |-+|.+.+......+..   +..+.++.|- ++..|++|.
T Consensus       153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~  226 (362)
T KOG0294|consen  153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK--IDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGG  226 (362)
T ss_pred             eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE--EEEEecccHhHhhhhhc---cccceeeeec-CCceEEEec
Confidence            99865433333322233334599999999988888775  89999988777666653   3467777774 567899999


Q ss_pred             CCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCC
Q 015198          281 DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEV  360 (411)
Q Consensus       281 ~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (411)
                      +|+.|.+||.+...+......|                                                       +..
T Consensus       227 d~~~i~~~D~ds~~~~~~~~AH-------------------------------------------------------~~R  251 (362)
T KOG0294|consen  227 DNEWISLKDTDSDTPLTEFLAH-------------------------------------------------------ENR  251 (362)
T ss_pred             CCceEEEeccCCCccceeeecc-------------------------------------------------------hhh
Confidence            9999999999986654333333                                                       012


Q ss_pred             ceEEEEEccC--CEEEEEEeCCcEEEEEEecC
Q 015198          361 THFIAAFGSQ--NTVVIVSMDGSFYRCSFDPV  390 (411)
Q Consensus       361 ~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~~  390 (411)
                      ++.+..+..+  ..|+++++||.+.+|.++.+
T Consensus       252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            3334444432  68999999999999999975

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.2e-20  Score=164.98  Aligned_cols=241  Identities=19%  Similarity=0.221  Sum_probs=191.7

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEe-CCcEEEEecCCCcceEEeecCCCC-EEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           43 DEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGG-FRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        43 h~~~V~~l~~s~~g~-~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      ...+|.+..|.|+|. .+++++ ..-+..||+.+.+........+.. ..+..+..++++.+++..+..     |.|.+.
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lL  330 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLL  330 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEee
Confidence            356889999999999 777777 888999999875543322222222 234445567788788888877     999999


Q ss_pred             ECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       120 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      ...+++.+..++..+.|..+.|+.+++.+.   .+|.|++||++...+++.+.... .+....++.+.++.++|+ |+..
T Consensus       331 hakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~-GS~~  408 (514)
T KOG2055|consen  331 HAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLAT-GSDS  408 (514)
T ss_pred             hhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-ccceeeeeecCCCceEEe-ccCc
Confidence            999999999999999999999999998777   58999999999999998886543 345566776777778875 8999


Q ss_pred             CeEEEEEcCC-------cceEEEeccccceeEEEecCCCCEEEEEcC--CCeEEEEEECCCCceEEEEeCCC-CCcceEE
Q 015198          197 GQVRIEHFGL-------NMIKLINAHDSHIACFTLTLDGLLLATAST--RGTLIRIFNTVDGTRLQEVRRGV-DRAEIYS  266 (411)
Q Consensus       197 g~i~i~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~--dg~~I~vwd~~~~~~~~~~~~~~-~~~~v~~  266 (411)
                      |.|.||+.+.       +++..+..-...|++++|++++++||.+|.  +.. +++-.+.+......+.... .-+.|+|
T Consensus       409 GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~vtc  487 (514)
T KOG2055|consen  409 GIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHVTC  487 (514)
T ss_pred             ceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccceEE
Confidence            9999987543       556666667789999999999999988775  455 8998888877666665421 2247999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          267 IALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       267 l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      ++|+|.+.+||.|..+|.+.+|.+.
T Consensus       488 ~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  488 MAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEecCCCceEEeecCCCceeeEeec
Confidence            9999999999999999999999985

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.86  E-value=3.7e-20  Score=171.04  Aligned_cols=233  Identities=13%  Similarity=0.213  Sum_probs=190.8

Q ss_pred             cCCCCCCeEE-EEEcC-CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           40 SDVDEIELIS-VSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        40 ~~~h~~~V~~-l~~s~-~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..+|.+-|.+ ++|-+ ++-.|++|+ |..|.+|........+.  +.+|...+.++.-..++. +++|+.|     .++
T Consensus        53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~--LkgH~snVC~ls~~~~~~-~iSgSWD-----~Ta  124 (745)
T KOG0301|consen   53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT--LKGHKSNVCSLSIGEDGT-LISGSWD-----STA  124 (745)
T ss_pred             cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhh--hhccccceeeeecCCcCc-eEecccc-----cce
Confidence            5567777877 88875 455688888 99999999987665554  458899999988777777 8999998     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      ++|-  .+++...++ |...|+++..-|++.++.  .|..|++|.  .++.++++.+|...+..+++-  +++.++  ++
T Consensus       125 kvW~--~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl--~~~~fl--Sc  196 (745)
T KOG0301|consen  125 KVWR--IGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVL--DDSHFL--SC  196 (745)
T ss_pred             EEec--chhhhcccCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEe--cCCCeE--ee
Confidence            9998  445555566 999999999999997777  899999998  478999999998855544444  444444  45


Q ss_pred             CCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCC
Q 015198          194 LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (411)
Q Consensus       194 ~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (411)
                      +.||.|++|+.++..+..+.+|..-|++++...++..++++++|++ ++||+..  ++.+.+.-  ....|+++.+-++|
T Consensus       197 sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~l--PttsiWsa~~L~Ng  271 (745)
T KOG0301|consen  197 SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVITL--PTTSIWSAKVLLNG  271 (745)
T ss_pred             cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEec--CccceEEEEEeeCC
Confidence            6999999999999999999999999999998888889999999999 9999865  77777773  23389999998888


Q ss_pred             CEEEEEeCCCcEEEEEccccc
Q 015198          274 QWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       274 ~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      . |++|+.||.|+||-.+...
T Consensus       272 D-Ivvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  272 D-IVVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             C-EEEeccCceEEEEEecccc
Confidence            7 6788999999999887543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=9.1e-20  Score=168.47  Aligned_cols=291  Identities=14%  Similarity=0.178  Sum_probs=210.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec-----CCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-----KSGGFRIVEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      ..+.||++.|+++.|+|.+..|++++ |.++.+|.-+....+.....     .+.........|++++..+++-+..   
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~---  337 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT---  337 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc---
Confidence            34679999999999999998888888 99999999876533333222     2234457888999999888888877   


Q ss_pred             CCCeEEEEECCCC-cEEEE--Ee-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce-eeEEE---eccCCCcceEEE
Q 015198          112 PPTKVIIWDDHQS-RCIGE--FA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-LLHQI---ETLANLRGLCCL  180 (411)
Q Consensus       112 ~d~~i~vwd~~~~-~~~~~--~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~-~~~~~---~~~~~~~~~~~~  180 (411)
                        |..++|..+.. .....  +. |-..|.++.|+|.|.++.   .|-+-++|-.-..+ .-+.+   +.|.....++++
T Consensus       338 --Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~  415 (764)
T KOG1063|consen  338 --GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF  415 (764)
T ss_pred             --CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence              99999993332 22222  22 889999999999999887   68888887643111 11222   233333333333


Q ss_pred             ccCCCceEEEEecCCCCeEEEEEcCC------------------------------------------------------
Q 015198          181 SHHSSTSVLACPGLQRGQVRIEHFGL------------------------------------------------------  206 (411)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~i~i~~~~~------------------------------------------------------  206 (411)
                      -.. +- .+ .+|.+...++++....                                                      
T Consensus       416 vn~-~~-~F-VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~  492 (764)
T KOG1063|consen  416 VNE-DL-QF-VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP  492 (764)
T ss_pred             ccC-Cc-ee-eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence            332 22 22 2344555555543211                                                      


Q ss_pred             -----------------------cceEEEeccccceeEEEecCCCCEEEEEcCCCe----EEEEEECCCCceEEEEeCCC
Q 015198          207 -----------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGT----LIRIFNTVDGTRLQEVRRGV  259 (411)
Q Consensus       207 -----------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~----~I~vwd~~~~~~~~~~~~~~  259 (411)
                                             ..++.+.+|...|++++.+|+|+++|++.....    .|++|+..+...++.+..  
T Consensus       493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~--  570 (764)
T KOG1063|consen  493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG--  570 (764)
T ss_pred             cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--
Confidence                                   113445689999999999999999999875432    499999988888888888  


Q ss_pred             CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccc
Q 015198          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR  339 (411)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (411)
                      |.-.|+.|+|||||++|++.+.|.++.+|........+                                          
T Consensus       571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e------------------------------------------  608 (764)
T KOG1063|consen  571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE------------------------------------------  608 (764)
T ss_pred             cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh------------------------------------------
Confidence            88899999999999999999999999999986655332                                          


Q ss_pred             cccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecC
Q 015198          340 GVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPV  390 (411)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~  390 (411)
                                ..|+..+.+...+..|.|+|+ ..+++++-|-.|.+|.....
T Consensus       609 ----------~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  609 ----------FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ----------hhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence                      224556667778888999999 55888888999999998864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.8e-20  Score=165.72  Aligned_cols=218  Identities=12%  Similarity=0.182  Sum_probs=175.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      -.++|.+++-+|+|.+|+.|+ .|.+++|.+.++..+...  ..|-..+.++.|+.|+..+++++.|     |.|.+|.+
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHYQ~ITcL~fs~dgs~iiTgskD-----g~V~vW~l  152 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL--SAHYQSITCLKFSDDGSHIITGSKD-----GAVLVWLL  152 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH--HhhccceeEEEEeCCCcEEEecCCC-----ccEEEEEE
Confidence            467899999999999999998 999999999997655443  4888899999999999999999998     99999984


Q ss_pred             C---------CCcEEEEEe-ecCceeEEEEcCCe---EEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          122 H---------QSRCIGEFA-FRSDVRSVKLSRDR---IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       122 ~---------~~~~~~~~~-~~~~i~~~~~~~~~---~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                      .         +-++++.+. |.-+|+++...+.+   +++.  .|.++++||+..+.++..+....   ...++..+|-.
T Consensus       153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~---si~av~lDpae  229 (476)
T KOG0646|consen  153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS---SIKAVALDPAE  229 (476)
T ss_pred             EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC---cceeEEEcccc
Confidence            2         235566666 88999999987653   3332  79999999999999988876433   44455555544


Q ss_pred             eEEEEecCCCCeEEEEEcCC-----------------cceEEEecccc--ceeEEEecCCCCEEEEEcCCCeEEEEEECC
Q 015198          187 SVLACPGLQRGQVRIEHFGL-----------------NMIKLINAHDS--HIACFTLTLDGLLLATASTRGTLIRIFNTV  247 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~-----------------~~~~~~~~~~~--~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~  247 (411)
                      ..+ +.|..+|.|.+.+...                 ..+..+.+|..  +|+|++++-||.+|++|+.||. |+|||+.
T Consensus       230 ~~~-yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-VcvWdi~  307 (476)
T KOG0646|consen  230 RVV-YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCVWDIY  307 (476)
T ss_pred             cEE-EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEEEecc
Confidence            454 4588999999843321                 33566778988  9999999999999999999999 9999999


Q ss_pred             CCceEEEEeCCCCCcceEEEEeCCCCC
Q 015198          248 DGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (411)
Q Consensus       248 ~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (411)
                      +.++++++..  ..++|+.+.+.|-.+
T Consensus       308 S~Q~iRtl~~--~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  308 SKQCIRTLQT--SKGPVTNLQINPLER  332 (476)
T ss_pred             hHHHHHHHhh--hccccceeEeecccc
Confidence            9999888875  567899999976544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.86  E-value=4.9e-19  Score=166.86  Aligned_cols=246  Identities=17%  Similarity=0.134  Sum_probs=185.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE-EEEecCCCCCCCCCe
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTK  115 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~d~~  115 (411)
                      ....++...|+++.=+|-=..+|+|. +|+|.|+|+...+.+....  .....+.++.|..||. .++++...     |.
T Consensus       196 ~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~-----G~  268 (910)
T KOG1539|consen  196 YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSN-----GD  268 (910)
T ss_pred             EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCC-----ce
Confidence            44567889999999999999999999 9999999999866655543  3358899999998875 45555554     88


Q ss_pred             EEEEECCCCcEEEEEe--ecC-----------------------------------------------------------
Q 015198          116 VIIWDDHQSRCIGEFA--FRS-----------------------------------------------------------  134 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~--~~~-----------------------------------------------------------  134 (411)
                      +.+||++..+.+..+.  |.+                                                           
T Consensus       269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~  348 (910)
T KOG1539|consen  269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH  348 (910)
T ss_pred             EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence            9999987655443332  211                                                           


Q ss_pred             --------------------------------------------------------------------------------
Q 015198          135 --------------------------------------------------------------------------------  134 (411)
Q Consensus       135 --------------------------------------------------------------------------------  134 (411)
                                                                                                      
T Consensus       349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~  428 (910)
T KOG1539|consen  349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN  428 (910)
T ss_pred             EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence                                                                                            


Q ss_pred             ---------------------ceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEE---eccCCCcceEEEccCCCce
Q 015198          135 ---------------------DVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       135 ---------------------~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  187 (411)
                                           .+++++.++.|++.+   ..|.|-+|++++|-....+   ..|..  .+..++.+.-++
T Consensus       429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~--~V~gla~D~~n~  506 (910)
T KOG1539|consen  429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG--EVTGLAVDGTNR  506 (910)
T ss_pred             ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC--ceeEEEecCCCc
Confidence                                 122333333333333   3566666666666555555   23444  455666666667


Q ss_pred             EEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198          188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (411)
                      .+++ ++.+|.+++|+...+.+..--.-...+.++..+....+++.+..|-. |+++|..+.+.++.|.+  |.+.|+++
T Consensus       507 ~~vs-a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~-I~vvD~~t~kvvR~f~g--h~nritd~  582 (910)
T KOG1539|consen  507 LLVS-AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFS-IRVVDVVTRKVVREFWG--HGNRITDM  582 (910)
T ss_pred             eEEE-ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCcee-EEEEEchhhhhhHHhhc--cccceeee
Confidence            7766 55899999999988764443345667888888888888999999998 99999999999999999  88999999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +|||||+||++++.|++|++||+.++...
T Consensus       583 ~FS~DgrWlisasmD~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  583 TFSPDGRWLISASMDSTIRTWDLPTGTLI  611 (910)
T ss_pred             EeCCCCcEEEEeecCCcEEEEeccCccee
Confidence            99999999999999999999999999854

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=5e-18  Score=151.75  Aligned_cols=274  Identities=12%  Similarity=0.144  Sum_probs=209.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEE-EeCCcEEEEecCCCcceEEeec--CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           42 VDEIELISVSWNQDYGCFAA-GTSCGFRIYNCEPFKETFRRDL--KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~-g~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ...+.|....|+|.+..|++ .+.+.+..|+.+......+..+  +.....+.++.|.+++..+.+.+.      |.|.|
T Consensus       198 ~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~------G~i~I  271 (626)
T KOG2106|consen  198 TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSG------GNILI  271 (626)
T ss_pred             eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCC------ceEEE
Confidence            34566788999998765554 4599999999887544333222  233478899999999987766444      99999


Q ss_pred             EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (411)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (411)
                      |+..+.+..+... |++.|.+++...+|.++.  .|..|..|| ..-+.++.++.+...-.+..+...... ++ + |..
T Consensus       272 w~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d-i~-v-GTt  347 (626)
T KOG2106|consen  272 WSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD-IL-V-GTT  347 (626)
T ss_pred             EeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc-EE-E-eec
Confidence            9987777766655 999999999999999998  899999999 555566666555544455566655433 33 2 545


Q ss_pred             CCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCE
Q 015198          196 RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW  275 (411)
Q Consensus       196 dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~  275 (411)
                      .+.|.-=...........+|......++.+|+...+++++.|+. +++|+  ..+++.+..   ...++.++.|+|.| .
T Consensus       348 rN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~-v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg-~  420 (626)
T KOG2106|consen  348 RNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH-VRLWN--DHKLEWTKI---IEDPAECADFHPSG-V  420 (626)
T ss_pred             cceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce-EEEcc--CCceeEEEE---ecCceeEeeccCcc-e
Confidence            55665544555555666789999999999999999999999999 99999  555555544   34478999999999 9


Q ss_pred             EEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEE
Q 015198          276 LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF  355 (411)
Q Consensus       276 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (411)
                      ||.|...|...|.|.++..-                                                         .++
T Consensus       421 va~Gt~~G~w~V~d~e~~~l---------------------------------------------------------v~~  443 (626)
T KOG2106|consen  421 VAVGTATGRWFVLDTETQDL---------------------------------------------------------VTI  443 (626)
T ss_pred             EEEeeccceEEEEeccccee---------------------------------------------------------EEE
Confidence            99999999999999988542                                                         245


Q ss_pred             EeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          356 HIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                      +.......++.|+++ ..|++++.|+.+|+|.++.
T Consensus       444 ~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  444 HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence            555567889999999 7788888899999999997

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2.1e-21  Score=179.95  Aligned_cols=220  Identities=17%  Similarity=0.280  Sum_probs=183.4

Q ss_pred             CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecC
Q 015198           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRS  134 (411)
Q Consensus        57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~  134 (411)
                      .+++... +-.+++|+.....        .|...+-++..-.....+++|+.|     ..+-+|.+..-..+..+. |..
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~~~--------~hsaav~~lk~~~s~r~~~~Gg~~-----~k~~L~~i~kp~~i~S~~~hes   71 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTREFV--------AHSAAVGCLKIRKSSRSLVTGGED-----EKVNLWAIGKPNAITSLTGHES   71 (825)
T ss_pred             cccceeeeeeccccccchhhh--------hhhhhhceeeeeccceeeccCCCc-----eeeccccccCCchhheeeccCC
Confidence            3444444 6667788865311        233333343335567788899988     888899988777777766 999


Q ss_pred             ceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceE
Q 015198          135 DVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIK  210 (411)
Q Consensus       135 ~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~  210 (411)
                      +|.++.|+++..+++   .+|.|++||++..+.++.+.+|...  ++.+.|+|-+.+.+ +|+.|+.+++|+.. ..+..
T Consensus        72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--~~sv~f~P~~~~~a-~gStdtd~~iwD~Rk~Gc~~  148 (825)
T KOG0267|consen   72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--ITSVDFHPYGEFFA-SGSTDTDLKIWDIRKKGCSH  148 (825)
T ss_pred             cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC--cceeeeccceEEec-cccccccceehhhhccCcee
Confidence            999999999998888   7999999999999999999888874  44555777777774 58999999999987 68899


Q ss_pred             EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198          211 LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       211 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                      .+.+|...+..+.|+|+|++++.+++|.. ++|||+..|+.+.+|..  |.+.+..+.|+|..-+++.|+.|++|++||+
T Consensus       149 ~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl  225 (825)
T KOG0267|consen  149 TYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL  225 (825)
T ss_pred             eecCCcceeEEEeecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeecc
Confidence            99999999999999999999999999999 99999999999999998  8889999999999999999999999999999


Q ss_pred             ccccc
Q 015198          291 RVRVV  295 (411)
Q Consensus       291 ~~~~~  295 (411)
                      ++-+.
T Consensus       226 etfe~  230 (825)
T KOG0267|consen  226 ETFEV  230 (825)
T ss_pred             ceeEE
Confidence            97653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=1.9e-19  Score=163.77  Aligned_cols=253  Identities=15%  Similarity=0.141  Sum_probs=186.3

Q ss_pred             ccCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC--eEEEEec
Q 015198           29 SASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGA  105 (411)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~  105 (411)
                      -.+|+........+|++.|.+|+..|.|.+|++|+ ||+|+||.+.++..+....+ ..  .|.+++|+|.  ..+|+.+
T Consensus       385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~--~I~~vaw~P~~~~~vLAvA  461 (733)
T KOG0650|consen  385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DS--EIRSVAWNPLSDLCVLAVA  461 (733)
T ss_pred             cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cc--eeEEEEecCCCCceeEEEE
Confidence            34555556667889999999999999999999999 99999999999888877766 33  4556666653  3333332


Q ss_pred             CCC---------------------------CCCCCCeEEEEECCC---C--cEEEEEeecCceeEEEEcCCeEEEE----
Q 015198          106 GDN---------------------------SQYPPTKVIIWDDHQ---S--RCIGEFAFRSDVRSVKLSRDRIVVV----  149 (411)
Q Consensus       106 ~~d---------------------------~~~~d~~i~vwd~~~---~--~~~~~~~~~~~i~~~~~~~~~~~~~----  149 (411)
                      -.+                           ....+..+..|.-..   .  .....+.|...|..+.|+..|.+++    
T Consensus       462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~  541 (733)
T KOG0650|consen  462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP  541 (733)
T ss_pred             ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence            221                           012345666776331   1  1223456899999999999999998    


Q ss_pred             --EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecC
Q 015198          150 --LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTL  226 (411)
Q Consensus       150 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp  226 (411)
                        ....|.|+++...+....|.....  .+.+..++|...+|+++  ....|+|++... ..++.+......|..++++|
T Consensus       542 ~~~~~~VliHQLSK~~sQ~PF~kskG--~vq~v~FHPs~p~lfVa--Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp  617 (733)
T KOG0650|consen  542 DSGNKSVLIHQLSKRKSQSPFRKSKG--LVQRVKFHPSKPYLFVA--TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP  617 (733)
T ss_pred             CCCcceEEEEecccccccCchhhcCC--ceeEEEecCCCceEEEE--eccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence              356899999977665555544344  34444455544555543  467899966554 55666777788899999999


Q ss_pred             CCCEEEEEcCCCeEEEEEECCCC-ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          227 DGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       227 ~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      .|..|+.++.|+. +..||+.-+ +..+++.-  |...+++++|++.-.++++|+.||++.||.-.
T Consensus       618 ~GDnli~gs~d~k-~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~  680 (733)
T KOG0650|consen  618 NGDNLILGSYDKK-MCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM  680 (733)
T ss_pred             CCCeEEEecCCCe-eEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence            9999999999999 999999755 45566665  88899999999999999999999999998643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=5.6e-20  Score=149.94  Aligned_cols=249  Identities=13%  Similarity=0.166  Sum_probs=186.4

Q ss_pred             CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc---EEEEEe-ecCceeEEEEcC--CeEEEE---EcCeEE
Q 015198           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR---CIGEFA-FRSDVRSVKLSR--DRIVVV---LEHKIY  155 (411)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~---~~~~~~-~~~~i~~~~~~~--~~~~~~---~dg~i~  155 (411)
                      .|...|.....+--+..|++++.|     ++|+|+.++.+.   .+.++. |.++|..++|..  -|.+++   .||+|.
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD-----~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSD-----GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCC-----ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            344444444444557889999988     999999987654   456666 999999999976  688888   799999


Q ss_pred             EEEcCCce--eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc----ceEEEeccccceeEEEecCC--
Q 015198          156 VYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLD--  227 (411)
Q Consensus       156 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~~~i~~l~~sp~--  227 (411)
                      ||.-.+++  .......|...+..++++|+.-+..|++ ++.||.|.|...+..    ..+....|.-.|++++|.|-  
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEE-eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence            99987763  3345567788888999999998888877 678999999444332    34455789999999999985  


Q ss_pred             -C-----------CEEEEEcCCCeEEEEEECCCCc--eEEEEeCCCCCcceEEEEeCCCC----CEEEEEeCCCcEEEEE
Q 015198          228 -G-----------LLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNV----QWLAVASDKGTVHIFS  289 (411)
Q Consensus       228 -g-----------~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg----~~l~s~s~dg~I~vwd  289 (411)
                       |           +.|++|+.|.. |+||+..+++  .-+++.+  |...|+.++|.|.-    .+||+++.||++.||-
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~--H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEG--HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             CccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhhh--cchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence             4           56999999999 9999987763  3344666  88999999999964    4799999999999998


Q ss_pred             ccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEcc
Q 015198          290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS  369 (411)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (411)
                      .+ .+..+                                                    |...-.+--......+.|+.
T Consensus       240 ~~-~e~e~----------------------------------------------------wk~tll~~f~~~~w~vSWS~  266 (299)
T KOG1332|consen  240 KD-EEYEP----------------------------------------------------WKKTLLEEFPDVVWRVSWSL  266 (299)
T ss_pred             ec-CccCc----------------------------------------------------ccccccccCCcceEEEEEec
Confidence            87 22110                                                    00000110113567788998


Q ss_pred             C-CEEEEEEeCCcEEEEEEecCCCCcEEE
Q 015198          370 Q-NTVVIVSMDGSFYRCSFDPVHGGEMLQ  397 (411)
Q Consensus       370 ~-~~~~~~~~dg~~~~~~~~~~~~~~~~~  397 (411)
                      . +.|.+++.|..|.+|.-..  .|+...
T Consensus       267 sGn~LaVs~GdNkvtlwke~~--~Gkw~~  293 (299)
T KOG1332|consen  267 SGNILAVSGGDNKVTLWKENV--DGKWEE  293 (299)
T ss_pred             cccEEEEecCCcEEEEEEeCC--CCcEEE
Confidence            7 7788888899999998877  445544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=7.1e-20  Score=169.62  Aligned_cols=242  Identities=14%  Similarity=0.204  Sum_probs=188.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC---CeEEEEecCCCCCCCCCe
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC---NILALVGAGDNSQYPPTK  115 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~d~~~~d~~  115 (411)
                      .-+..-.|.+++.+|+|++||+|. -|+++||++...+.....+  .|...|.++.|+.   ...+|++++.|     ..
T Consensus       455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e--AHesEilcLeyS~p~~~~kLLASasrd-----Rl  527 (1080)
T KOG1408|consen  455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME--AHESEILCLEYSFPVLTNKLLASASRD-----RL  527 (1080)
T ss_pred             hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee--cccceeEEEeecCchhhhHhhhhccCC-----ce
Confidence            334566799999999999999999 9999999998766655554  7888899888874   35789999998     99


Q ss_pred             EEEEECCCC-cEEEEEe-ecCceeEEEEcCCe--EEEE---EcCeEEEEEcCCceeeEEEeccC---CCcceEEEccCCC
Q 015198          116 VIIWDDHQS-RCIGEFA-FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVDLKLLHQIETLA---NLRGLCCLSHHSS  185 (411)
Q Consensus       116 i~vwd~~~~-~~~~~~~-~~~~i~~~~~~~~~--~~~~---~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~  185 (411)
                      |.|+|+... ..++++. |...|+++.|.-.|  ...+   .|..|.+--.+.......+..+.   ...+...+..+|.
T Consensus       528 IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~  607 (1080)
T KOG1408|consen  528 IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT  607 (1080)
T ss_pred             EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence            999997654 5566676 89999999998766  2233   45555432222111111222111   2225566777777


Q ss_pred             ceEEEEecCCCCeEEEEEc-CCcceEEEec---cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC
Q 015198          186 TSVLACPGLQRGQVRIEHF-GLNMIKLINA---HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR  261 (411)
Q Consensus       186 ~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~  261 (411)
                      .++++. ++.|..|+|++. .++..+.|++   |++....+...|.|.||++...|.+ +.++|..+|+++.+..+  |.
T Consensus       608 ~k~v~t-~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~G--Hs  683 (1080)
T KOG1408|consen  608 SKLVVT-VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMTG--HS  683 (1080)
T ss_pred             cceEEE-EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhcC--cc
Confidence            777776 569999999654 5677777764   5677888999999999999999999 99999999999999998  88


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      ..|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus       684 E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  684 EAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hheeeeeecccchhheeecCCceEEEEECch
Confidence            8999999999999999999999999999864

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=3.3e-21  Score=178.63  Aligned_cols=235  Identities=11%  Similarity=0.154  Sum_probs=201.9

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      .......|...|.++..-..++.+++|+ |..+.+|.+.....+..  +..|...|-++.|+....+++.|..+     |
T Consensus        20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S--~~~hespIeSl~f~~~E~Llaagsas-----g   92 (825)
T KOG0267|consen   20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS--LTGHESPIESLTFDTSERLLAAGSAS-----G   92 (825)
T ss_pred             cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe--eeccCCcceeeecCcchhhhcccccC-----C
Confidence            3456778999999999988889999999 88889999876554444  44888899999999999999999988     9


Q ss_pred             eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      +|++||++.++.++++. |...+..+.|+|-+.+.+   .|+.+++||++...+.+.+.+|...+.  .+.+.|+|.+++
T Consensus        93 tiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~--~l~lsP~Gr~v~  170 (825)
T KOG0267|consen   93 TIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD--VLRLSPDGRWVA  170 (825)
T ss_pred             ceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE--EEeecCCCceee
Confidence            99999999999999887 899999999999999997   799999999998889999988776444  445556677887


Q ss_pred             EecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198          191 CPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (411)
                      . |+.|..++||+.. ++....|+.|.+.+..+.|+|..-++++|+.|+. +++||+++.+.+.....  ....|.++.|
T Consensus       171 ~-g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~f  246 (825)
T KOG0267|consen  171 S-GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAF  246 (825)
T ss_pred             c-cCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeee
Confidence            6 6679999998875 5677889999999999999999999999999999 99999999888877766  5678999999


Q ss_pred             CCCCCEEEEEeCCC
Q 015198          270 SPNVQWLAVASDKG  283 (411)
Q Consensus       270 spdg~~l~s~s~dg  283 (411)
                      +|++..+++|....
T Consensus       247 n~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  247 NPDGKIVLSGEQIS  260 (825)
T ss_pred             cCCceeeecCchhh
Confidence            99999888876554

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.6e-19  Score=149.35  Aligned_cols=205  Identities=16%  Similarity=0.248  Sum_probs=157.3

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc-----EEEEEeecCceeEEEEcCCeEEEE----EcCe
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-----CIGEFAFRSDVRSVKLSRDRIVVV----LEHK  153 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~----~dg~  153 (411)
                      +++|...+.+++|+.||..|++++.|     +.|++|+++...     +++.--.-+..+.+.|.||.+-++    ...+
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~D-----r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGD-----RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCC-----ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence            46889999999999999999999998     999999987632     222211234677899999987666    6788


Q ss_pred             EEEEEcC---CceeeEEE---e---c-cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEE
Q 015198          154 IYVYSFV---DLKLLHQI---E---T-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFT  223 (411)
Q Consensus       154 i~iwd~~---~~~~~~~~---~---~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~  223 (411)
                      +++|.+.   +|.....+   .   . ....+.++.+-..+.+.+|++ ++.|..|.||+..++.+..+......-+..+
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims-as~dt~i~lw~lkGq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS-ASLDTKICLWDLKGQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE-ecCCCcEEEEecCCceeeeecccccccccee
Confidence            9999873   22221111   0   0 112234455556666677765 6789999999999999999988888888899


Q ss_pred             ecCCCCEEEEEcCCCeEEEEEECC---CC-----ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          224 LTLDGLLLATASTRGTLIRIFNTV---DG-----TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       224 ~sp~g~~l~s~s~dg~~I~vwd~~---~~-----~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      .+|+|++|++++-.-. |++|.+-   .|     ..+..+++  |...|..++|+++...+++.+.||+++|||++-.-+
T Consensus       236 vSP~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkG--H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~  312 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKG--HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE  312 (420)
T ss_pred             eCCCCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheecc--chhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence            9999999999998888 9999863   23     23456666  999999999999999999999999999999986543


Q ss_pred             C
Q 015198          296 G  296 (411)
Q Consensus       296 ~  296 (411)
                      .
T Consensus       313 ~  313 (420)
T KOG2096|consen  313 A  313 (420)
T ss_pred             c
Confidence            3

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=5e-19  Score=152.79  Aligned_cols=190  Identities=17%  Similarity=0.179  Sum_probs=148.1

Q ss_pred             cCCeEEEEecCCCCCCCCCeEEEEECCC----------------CcEEEEEe-ecCceeEEEEcC--CeEEEE--EcCeE
Q 015198           96 RCNILALVGAGDNSQYPPTKVIIWDDHQ----------------SRCIGEFA-FRSDVRSVKLSR--DRIVVV--LEHKI  154 (411)
Q Consensus        96 ~~~~~~l~s~~~d~~~~d~~i~vwd~~~----------------~~~~~~~~-~~~~i~~~~~~~--~~~~~~--~dg~i  154 (411)
                      .++..+.++-++.     |.|.||++..                .+++.++. |...=++++|+|  .|.++.  .-+.|
T Consensus       162 ~~~~~~~aswse~-----G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I  236 (440)
T KOG0302|consen  162 LGNEVLCASWSEN-----GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGI  236 (440)
T ss_pred             cCCcceeeeeccc-----CcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccce
Confidence            3466777777776     9999999642                34556665 788889999999  444444  35779


Q ss_pred             EEEEcCCceee---EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc---ceEEEeccccceeEEEecCCC
Q 015198          155 YVYSFVDLKLL---HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDG  228 (411)
Q Consensus       155 ~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g  228 (411)
                      ++|...++.-.   ..+.+|...+..++++|..++  ++++++-||+|+||+.+..   .....+.|.+.|+.|.|+.+-
T Consensus       237 ~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~--vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~  314 (440)
T KOG0302|consen  237 HLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG--VFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE  314 (440)
T ss_pred             EeeeeccCceeecCccccccccchhhhccCCccCc--eEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc
Confidence            99998776432   234557776666677776654  4456789999999998875   344558999999999999988


Q ss_pred             CEEEEEcCCCeEEEEEECCC---CceEEEEeCCCCCcceEEEEeCCC-CCEEEEEeCCCcEEEEEcccccc
Q 015198          229 LLLATASTRGTLIRIFNTVD---GTRLQEVRRGVDRAEIYSIALSPN-VQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       229 ~~l~s~s~dg~~I~vwd~~~---~~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      .+||+|+.||. ++|||++.   ++++.+|+.  |..+|++|.|+|. ...|++++.|.+|.+||+..-.-
T Consensus       315 ~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  315 PLLASGGDDGT-LSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             ceeeecCCCce-EEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            89999999999 99999975   567888988  8899999999985 45788899999999999987554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.84  E-value=3e-18  Score=153.11  Aligned_cols=231  Identities=14%  Similarity=0.144  Sum_probs=175.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      ..|++.|.++..-.+|.+|. |+ |+.|..|| +..++....++......+..+.-.... ++++.+.      +.|..=
T Consensus       284 ~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d-i~vGTtr------N~iL~G  354 (626)
T KOG2106|consen  284 HAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD-ILVGTTR------NFILQG  354 (626)
T ss_pred             eecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCCCc-EEEeecc------ceEEEe
Confidence            38999999999999998887 88 99999999 444555555564544555555544444 5555544      666666


Q ss_pred             ECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       120 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      .++++-.+..+.|......++.+|+...++   .|+.+++|+  ..+++.......   ...+..++|.+ .+|. |...
T Consensus       355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d---~~~~~~fhpsg-~va~-Gt~~  427 (626)
T KOG2106|consen  355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED---PAECADFHPSG-VVAV-GTAT  427 (626)
T ss_pred             eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC---ceeEeeccCcc-eEEE-eecc
Confidence            777777777777988999999999887776   799999999  445554443322   34556666666 5554 7788


Q ss_pred             CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEE
Q 015198          197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL  276 (411)
Q Consensus       197 g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l  276 (411)
                      |...+-+...+.+..+.....++++++|+|+|.+||.|+.|+. |+||-+..+.......+..+..+|+.+.|++|+++|
T Consensus       428 G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~  506 (626)
T KOG2106|consen  428 GRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL  506 (626)
T ss_pred             ceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceE
Confidence            8888866555655556555899999999999999999999999 999988765444333333345799999999999999


Q ss_pred             EEEeCCCcEEEE
Q 015198          277 AVASDKGTVHIF  288 (411)
Q Consensus       277 ~s~s~dg~I~vw  288 (411)
                      .+-+.|-.|..|
T Consensus       507 ~~~S~d~eiLyW  518 (626)
T KOG2106|consen  507 VSNSGDYEILYW  518 (626)
T ss_pred             EeccCceEEEEE
Confidence            999999999999

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.84  E-value=1.9e-19  Score=158.97  Aligned_cols=202  Identities=14%  Similarity=0.183  Sum_probs=156.2

Q ss_pred             EEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCce----------eeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          128 GEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK----------LLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       128 ~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      ..+.|.+.|+.+.+.|+...++    ..+.|+|||.....          +-..+.+|......+++.+...+.++  +|
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll--s~  196 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL--SG  196 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe--ec
Confidence            3456999999999999887776    57899999984321          11256677663344455555454443  57


Q ss_pred             CCCCeEEEEEcCC--------cceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCC--CceEEEEeCCCCCc
Q 015198          194 LQRGQVRIEHFGL--------NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVD--GTRLQEVRRGVDRA  262 (411)
Q Consensus       194 ~~dg~i~i~~~~~--------~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~--~~~~~~~~~~~~~~  262 (411)
                      +.|+.|.+|+.+.        .+...+.+|...|..++|++-. .++++++.|+. +.|||+++  .+......+  |.+
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~-L~iwD~R~~~~~~~~~~~a--h~~  273 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK-LMIWDTRSNTSKPSHSVKA--HSA  273 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe-EEEEEcCCCCCCCcccccc--cCC
Confidence            7999999999875        3456778999999999999854 57889999999 99999994  455555555  899


Q ss_pred             ceEEEEeCC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccc
Q 015198          263 EIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGV  341 (411)
Q Consensus       263 ~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (411)
                      .|++++|+| ++..||+|+.|++|.+||+++-+..                                             
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---------------------------------------------  308 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---------------------------------------------  308 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---------------------------------------------
Confidence            999999999 5567889999999999999987642                                             


Q ss_pred             cCcccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEec
Q 015198          342 LPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~  389 (411)
                                +.++.-+++.+..+.|+|+  ..|++.|.||++.+|.+..
T Consensus       309 ----------lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  309 ----------LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             ----------ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence                      2345556678889999998  6677778899999999985

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=9.2e-19  Score=156.09  Aligned_cols=237  Identities=14%  Similarity=0.121  Sum_probs=180.0

Q ss_pred             eEEEEEcCCCCEEEEEe---CCcEEEEecCCC-cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           47 LISVSWNQDYGCFAAGT---SCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        47 V~~l~~s~~g~~la~g~---dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      +.++.|+.... |++++   |..+++|.-+.. ..+..... .......++.......++++++..     ++|+|||++
T Consensus        37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s~S~y~~sgG~~-----~~Vkiwdl~  109 (673)
T KOG4378|consen   37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACASQSLYEISGGQS-----GCVKIWDLR  109 (673)
T ss_pred             ceeeeccccce-EEEeecCCceeEEEecccCCCCccceeec-cccchHHHHhhhhcceeeeccCcC-----ceeeehhhH
Confidence            89999988775 44443   888999976532 11111111 111123333333445888888887     999999999


Q ss_pred             CCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe
Q 015198          123 QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (411)
Q Consensus       123 ~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (411)
                      ...+++.++ |...|+++.++-...+++   ..|.|.|..+.++.....+....+. .+.-+.+++..++++.+.+.+|.
T Consensus       110 ~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq-svRll~ys~skr~lL~~asd~G~  188 (673)
T KOG4378|consen  110 AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ-SVRLLRYSPSKRFLLSIASDKGA  188 (673)
T ss_pred             HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC-eEEEeecccccceeeEeeccCCe
Confidence            777777777 999999999999888888   6789999999988877777655332 23345555555667677789999


Q ss_pred             EEEEEcCCcc--eEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCE
Q 015198          199 VRIEHFGLNM--IKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW  275 (411)
Q Consensus       199 i~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~  275 (411)
                      |.+|+.++..  ......|..+...|+|+|.. .+|++.+.|.. |.+||+...+....+.   ...+...++|+++|.+
T Consensus       189 VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~  264 (673)
T KOG4378|consen  189 VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLT---YSHPLSTVAFSECGTY  264 (673)
T ss_pred             EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceee---ecCCcceeeecCCceE
Confidence            9999998743  33447899999999999965 47889999999 9999998877766665   3458999999999999


Q ss_pred             EEEEeCCCcEEEEEcccccc
Q 015198          276 LAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       276 l~s~s~dg~I~vwd~~~~~~  295 (411)
                      |+.|+..|.|..||++..+.
T Consensus       265 L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  265 LCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             EEeecCCceEEEEecccCCC
Confidence            99999999999999998763

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.83  E-value=4.8e-18  Score=142.30  Aligned_cols=192  Identities=12%  Similarity=0.175  Sum_probs=149.3

Q ss_pred             CeEEEEecCCCCCCCCCeEEEEECCCCc----------EEEEE--e----ecCceeEEEEcCC--eEEEE--EcCeEEEE
Q 015198           98 NILALVGAGDNSQYPPTKVIIWDDHQSR----------CIGEF--A----FRSDVRSVKLSRD--RIVVV--LEHKIYVY  157 (411)
Q Consensus        98 ~~~~l~s~~~d~~~~d~~i~vwd~~~~~----------~~~~~--~----~~~~i~~~~~~~~--~~~~~--~dg~i~iw  157 (411)
                      .+.++++|+.|     |.|.+||++...          .+..+  +    |+-.|.++.|-|-  |.+..  .|.++++|
T Consensus        55 egrymlSGgad-----gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVW  129 (397)
T KOG4283|consen   55 EGRYMLSGGAD-----GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVW  129 (397)
T ss_pred             cceEEeecCCC-----ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEe
Confidence            57888899988     999999987532          11111  1    5678999999884  44444  79999999


Q ss_pred             EcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCE-EEEEc
Q 015198          158 SFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLL-LATAS  235 (411)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~-l~s~s  235 (411)
                      |..+.+....|+... .+...++++-.-...|+++|..+-.|++ +...+.....+.+|...|.++.|+|...+ |++|+
T Consensus       130 DtnTlQ~a~~F~me~-~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgs  208 (397)
T KOG4283|consen  130 DTNTLQEAVDFKMEG-KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGS  208 (397)
T ss_pred             ecccceeeEEeecCc-eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecC
Confidence            999988887776543 3444556655444456667889999999 77778889999999999999999998874 78999


Q ss_pred             CCCeEEEEEECCCC-ceEEEEe------------CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          236 TRGTLIRIFNTVDG-TRLQEVR------------RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       236 ~dg~~I~vwd~~~~-~~~~~~~------------~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      .||. |++||++.. .+...+.            ...|.+.|..++|+.|+.++++++.|..+++|+..+|+..
T Consensus       209 aDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  209 ADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT  281 (397)
T ss_pred             CCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc
Confidence            9999 999999754 2222222            2236778999999999999999999999999999998754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.7e-18  Score=162.70  Aligned_cols=241  Identities=13%  Similarity=0.133  Sum_probs=185.5

Q ss_pred             CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC-cEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCC
Q 015198           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-RCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD  161 (411)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~  161 (411)
                      .|..+...++|.+++.++++++.|     +.|++|+...- +.-..+. +...|.+++......+.. .+++|.+|.+..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsd-----g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSD-----GDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCC-----CceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence            466668889999999999999988     99999996655 4444444 778888888777644444 899999999987


Q ss_pred             ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeE
Q 015198          162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL  240 (411)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~  240 (411)
                      ++.-..+....-++.+++  ++.+|.++|+ |+.|-.|++ ...+......+.+|.++|.++.|+|++++||+.+-||. 
T Consensus        86 ~~~~~iL~Rftlp~r~~~--v~g~g~~iaa-gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~-  161 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLA--VSGSGKMIAA-GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK-  161 (933)
T ss_pred             CCccceeeeeeccceEEE--EecCCcEEEe-ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce-
Confidence            755444433334444444  4555667776 778888988 66677888899999999999999999999999999999 


Q ss_pred             EEEEECCCCceEEEEeCCC------CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCccccccc
Q 015198          241 IRIFNTVDGTRLQEVRRGV------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLN  314 (411)
Q Consensus       241 I~vwd~~~~~~~~~~~~~~------~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  314 (411)
                      |++||+.++.+..++.+-.      ....+..++|+|+|..|+..+.|+.|++|+....+...++...            
T Consensus       162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~------------  229 (933)
T KOG1274|consen  162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK------------  229 (933)
T ss_pred             EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc------------
Confidence            9999999988776665311      1335678999999888999999999999999998765322222            


Q ss_pred             CCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198          315 HSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~  388 (411)
                                                                ......++++|+|+ ..|++++.||.|.||+.+
T Consensus       230 ------------------------------------------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  230 ------------------------------------------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             ------------------------------------------ccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence                                                      11123678999999 556666779999999999

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=1.6e-18  Score=153.14  Aligned_cols=249  Identities=10%  Similarity=0.069  Sum_probs=179.7

Q ss_pred             cccCCCCCCeEEEEEcCCC--CEEEEEe-CCcEEEEecCCCcc--eEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDY--GCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQY  111 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g--~~la~g~-dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~  111 (411)
                      +...-+.++|++++|+|..  +++|+|. .|+|-+||+.+.++  .-...+..|...|..+.|+|. ...+.+.+.|   
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD---  256 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD---  256 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC---
Confidence            3345689999999999975  5788888 99999999953221  112224588888999999984 4566667776   


Q ss_pred             CCCeEEEEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCcee-eEEEeccCCCcceEEEccCC
Q 015198          112 PPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL-LHQIETLANLRGLCCLSHHS  184 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~  184 (411)
                        |+|++-|++.+.....+.   ....+..+.|+.+...+.   .=|...+||+++++. ...+..|...  +..++.+|
T Consensus       257 --GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK--I~sv~~NP  332 (498)
T KOG4328|consen  257 --GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK--ITSVALNP  332 (498)
T ss_pred             --ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc--cceeecCC
Confidence              999999988875433333   244566677776655444   335889999987654 5566677764  44555555


Q ss_pred             CceEEEEecCCCCeEEEEEcCC---c--ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECC----CCceEEEE
Q 015198          185 STSVLACPGLQRGQVRIEHFGL---N--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV----DGTRLQEV  255 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i~~~~~---~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~----~~~~~~~~  255 (411)
                      -..+++++++.|++.+||+.+.   +  +......|...|.+..|||.+-.|++.+.|.. |+|||..    .-.++.++
T Consensus       333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I  411 (498)
T KOG4328|consen  333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTI  411 (498)
T ss_pred             CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCcccee
Confidence            5556666788999999998764   2  23455689999999999999888999999999 9999973    33444444


Q ss_pred             eCCCCCc---ceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          256 RRGVDRA---EIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       256 ~~~~~~~---~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .-....+   ......|.|+..++++|-.-..|-|+|-..++
T Consensus       412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            4111110   33456899999999999999999999977765

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=9.8e-19  Score=153.99  Aligned_cols=232  Identities=15%  Similarity=0.171  Sum_probs=166.3

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEe-e------------------cCCCCEEEEEEeccCC-eEEEEecCCCCCCCCC
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRR-D------------------LKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPT  114 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~  114 (411)
                      |+++|+|+ +..|.|||++-...++.. .                  ..+|...+..+.|..+ ..+|++|+.|     .
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD-----~  266 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD-----K  266 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC-----c
Confidence            67999999 999999998632111100 0                  1235555667777765 4688999988     9


Q ss_pred             eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceee-EEEeccCCCcceEEEccCCCceE
Q 015198          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLL-HQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                      +|++||+.++++...+. |...|.++.|+|....+.    .|++|.+.|.+..... ..++ ....+..+.|.+..... 
T Consensus       267 TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~-  344 (463)
T KOG0270|consen  267 TVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENS-  344 (463)
T ss_pred             eEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCcee-
Confidence            99999999999999999 899999999999754444    7999999999843222 2222 22334455666655443 


Q ss_pred             EEEecCCCCeEEEEEcC--CcceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          189 LACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                       +.++..||+|+-.+.+  ++++..+++|.++|.+|++++.- .+|++++.|+. |++|++..............-+...
T Consensus       345 -f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~v~~~~~~~~rl~  422 (463)
T KOG0270|consen  345 -FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKSVKEHSFKLGRLH  422 (463)
T ss_pred             -EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCccccccccccccee
Confidence             3456799999995544  37899999999999999998754 47899999999 9999986544322111111123466


Q ss_pred             EEEeCCCCC-EEEEEeCCCcEEEEEccccccC
Q 015198          266 SIALSPNVQ-WLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       266 ~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      |.++.|+-. +|+.|+..+.++|||+-+....
T Consensus       423 c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  423 CFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ecccCCCcceEEEecCccceEEEeecccChhH
Confidence            777777654 5777888888999999887643

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=8.3e-19  Score=148.24  Aligned_cols=244  Identities=11%  Similarity=0.119  Sum_probs=191.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecC------C--------Ccc------------------------eE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCE------P--------FKE------------------------TF   79 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~------~--------~~~------------------------~~   79 (411)
                      ...||.+.|++++|++.+.++++++ |++-.||...      .        .+.                        +.
T Consensus       185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP  264 (481)
T KOG0300|consen  185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP  264 (481)
T ss_pred             eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence            4579999999999999999999999 9999999731      0        000                        00


Q ss_pred             EeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEE
Q 015198           80 RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIY  155 (411)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~  155 (411)
                      ...|.+|...+.+..|-..+..+++++.|     .+..+||+++++.+..+. |....+.++-+|..++++   .|.+.+
T Consensus       265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWD-----RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR  339 (481)
T KOG0300|consen  265 LMRLTGHRAVVSACDWLAGGQQMVTASWD-----RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR  339 (481)
T ss_pred             eeeeeccccceEehhhhcCcceeeeeecc-----ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence            11234566667777788889999999998     999999999999999998 999999999999999888   799999


Q ss_pred             EEEcCC-ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCCCEEE
Q 015198          156 VYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLA  232 (411)
Q Consensus       156 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~  232 (411)
                      +||++. -..+..|.+|...+....|..+.  + + ++|+.|.+|++|+...  .++..+. ...+++.++++..+..|+
T Consensus       340 LWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~-v-VSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIA  414 (481)
T KOG0300|consen  340 LWDFREAIQSVAVFQGHTDTVTSVVFNTDD--R-V-VSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIA  414 (481)
T ss_pred             eccchhhcceeeeecccccceeEEEEecCC--c-e-eecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEE
Confidence            999974 35667889998866665555543  2 3 3689999999998765  3445544 467889999998888888


Q ss_pred             EEcCCCeEEEEEECCCCceEEEEe---CCCCCcceEEEEeCCCCC--EEEEEeCCCcEEEEEccccc
Q 015198          233 TASTRGTLIRIFNTVDGTRLQEVR---RGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       233 s~s~dg~~I~vwd~~~~~~~~~~~---~~~~~~~v~~l~~spdg~--~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .--.+.. |++||++ |..+..+.   ...|...|.|++|..+..  -|++++.|..+.=|++..+.
T Consensus       415 iPhDNRq-vRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  415 IPHDNRQ-VRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             eccCCce-EEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence            8888888 9999985 44443433   222777899999986543  47899999999999998764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=3.4e-18  Score=157.53  Aligned_cols=270  Identities=12%  Similarity=0.119  Sum_probs=206.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      .|+.++|-|||..|+.+.+..+.|||.+.+...  ..+++|...+.+++|+.+|..+++|+.|     ..|.+|. ..-+
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLKgHKDtVycVAys~dGkrFASG~aD-----K~VI~W~-~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLKGHKDTVYCVAYAKDGKRFASGSAD-----KSVIIWT-SKLE   85 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccc--cccccccceEEEEEEccCCceeccCCCc-----eeEEEec-cccc
Confidence            899999999999999999999999999875543  3466999999999999999999999998     9999999 4455


Q ss_pred             EEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEE
Q 015198          126 CIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH  203 (411)
Q Consensus       126 ~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~  203 (411)
                      -+..+.|...|.|+.|+|-...++  .=...-+|........    .+.....+++.+|..||.+++. |-.+|+|.|-+
T Consensus        86 G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~----K~kss~R~~~CsWtnDGqylal-G~~nGTIsiRN  160 (1081)
T KOG1538|consen   86 GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS----KHKSSSRIICCSWTNDGQYLAL-GMFNGTISIRN  160 (1081)
T ss_pred             ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH----hhhhheeEEEeeecCCCcEEEE-eccCceEEeec
Confidence            566778999999999999887776  4455667876543222    2233346788889999999987 77899999977


Q ss_pred             cCCcceEEEe---ccccceeEEEecCCC-----CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCE
Q 015198          204 FGLNMIKLIN---AHDSHIACFTLTLDG-----LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW  275 (411)
Q Consensus       204 ~~~~~~~~~~---~~~~~i~~l~~sp~g-----~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~  275 (411)
                      ..+++...+.   +.+.+|.+++|+|..     ..+++.....+ +.+|.+ +|+.+..-+.  -.-...|+++.++|.+
T Consensus       161 k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~--L~FdP~CisYf~NGEy  236 (1081)
T KOG1538|consen  161 KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRA--LNFDPCCISYFTNGEY  236 (1081)
T ss_pred             CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeeccccc--CCCCchhheeccCCcE
Confidence            7776665554   468899999999864     47888888888 888887 5665543332  2235678999999999


Q ss_pred             EEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEE
Q 015198          276 LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF  355 (411)
Q Consensus       276 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (411)
                      +..|+.|+.+++|--+.-. ..                                          .              +
T Consensus       237 ~LiGGsdk~L~~fTR~Gvr-LG------------------------------------------T--------------v  259 (1081)
T KOG1538|consen  237 ILLGGSDKQLSLFTRDGVR-LG------------------------------------------T--------------V  259 (1081)
T ss_pred             EEEccCCCceEEEeecCeE-Ee------------------------------------------e--------------c
Confidence            9999999999998543221 11                                          0              0


Q ss_pred             EeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          356 HIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                      --.+.....++..|+ +.+++||.||.+-.|++-.
T Consensus       260 g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  260 GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            000123456778888 7899999999999998763

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=6.4e-17  Score=149.54  Aligned_cols=325  Identities=14%  Similarity=0.123  Sum_probs=220.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      +....|.+++|++.++++-+|.+|.|.-||+.+.+..+...  .....+.+++-+|....++.+.+|     |.+..++.
T Consensus        67 ~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d--~~gg~IWsiai~p~~~~l~Igcdd-----Gvl~~~s~  139 (691)
T KOG2048|consen   67 PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNID--SNGGAIWSIAINPENTILAIGCDD-----GVLYDFSI  139 (691)
T ss_pred             CCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEec--CCCcceeEEEeCCccceEEeecCC-----ceEEEEec
Confidence            44568999999977777766669999999999988777765  567778888888888888887777     98888887


Q ss_pred             CCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEecc-----C-CCcceEEEccCCCceEE
Q 015198          122 HQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL-----A-NLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       122 ~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~l  189 (411)
                      ..++......   .++.|.++.|+|++..++   .||.|++||...+..++.....     . .+.-+.++.+-.++ .|
T Consensus       140 ~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI  218 (691)
T KOG2048|consen  140 GPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TI  218 (691)
T ss_pred             CCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cE
Confidence            7777665543   468999999999999666   7999999999988777633221     1 22233333343343 34


Q ss_pred             EEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce--EEEEeCCCCCcceEE
Q 015198          190 ACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR--LQEVRRGVDRAEIYS  266 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~~~~~v~~  266 (411)
                      + +|...|+|.+|+.. +..++.+..|.+.|.+++.++++..+++++.|+. |.-|...+++.  +.......|...|.+
T Consensus       219 ~-sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~-ii~~~~~~~~~~wv~~~~r~~h~hdvrs  296 (691)
T KOG2048|consen  219 A-SGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK-IIQYSLTTNKSEWVINSRRDLHAHDVRS  296 (691)
T ss_pred             E-EecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc-eEEEEecCCccceeeeccccCCccccee
Confidence            4 58899999998865 5677888999999999999999999999999999 77776655533  222233337778999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCC-------CCCCCCCCcccccc
Q 015198          267 IALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISP-------STGANPGSSLSFMR  339 (411)
Q Consensus       267 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  339 (411)
                      ++..++  .|++|+.|..+.+-....-+.....         +-+++..+.-..+.+..       .-+...++.    +
T Consensus       297 ~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~---------~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrl----G  361 (691)
T KOG2048|consen  297 MAVIEN--ALISGGRDFTLAICSSREFKNMDHR---------QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRL----G  361 (691)
T ss_pred             eeeecc--eEEecceeeEEEEccccccCchhhh---------ccccccccceeecCccceEEEEeccccccceec----c
Confidence            999876  8999999999988777663322211         11122221111111111       000011110    0


Q ss_pred             cccCcccccccceEEEEeCC-CceEEEEEccCCEEEEEEeCCcEEEEEEecCC
Q 015198          340 GVLPKYFSSEWSFAQFHIPE-VTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVH  391 (411)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~  391 (411)
                      +..+.-=-.-.....+.+++ .....++.+|++++++.+.=..+.+|.+.++.
T Consensus       362 S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~  414 (691)
T KOG2048|consen  362 SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP  414 (691)
T ss_pred             CcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc
Confidence            00000000011233444444 45667888999999999998899999998854

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.81  E-value=5.3e-18  Score=155.59  Aligned_cols=280  Identities=14%  Similarity=0.111  Sum_probs=191.5

Q ss_pred             EEEEcCC---CCEEEEEe-CCcEEEEecCCCcce----EEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           49 SVSWNQD---YGCFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        49 ~l~~s~~---g~~la~g~-dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      +..|++.   ...|+.+. +|.|.++|.......    .......|...+.++.|.|....|++++.|     .++++||
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGD-----sT~r~Wd  128 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGD-----STIRPWD  128 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCC-----ceeeeee
Confidence            3556542   34678888 999999998743222    012234788899999999988889998887     9999999


Q ss_pred             CCCCcEEEE---EeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCce--e------------------e-------E
Q 015198          121 DHQSRCIGE---FAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK--L------------------L-------H  166 (411)
Q Consensus       121 ~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~--~------------------~-------~  166 (411)
                      +++++++..   +.|...|.+++|.+....++    .||.|.|||++-..  .                  .       +
T Consensus       129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~  208 (720)
T KOG0321|consen  129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR  208 (720)
T ss_pred             eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence            999988776   34999999999999887766    79999999985321  0                  0       0


Q ss_pred             EEeccCCCcc-eEEEccCCCceEEEEecCCCCeEEEEEcCCcc---------eEEEecc---ccceeEEEecCCCCEEEE
Q 015198          167 QIETLANLRG-LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM---------IKLINAH---DSHIACFTLTLDGLLLAT  233 (411)
Q Consensus       167 ~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~---------~~~~~~~---~~~i~~l~~sp~g~~l~s  233 (411)
                      ....+...+. .+......|...||.+|..|+.|++||++...         ...+..|   .-.+.++.....|.+|++
T Consensus       209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A  288 (720)
T KOG0321|consen  209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA  288 (720)
T ss_pred             ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence            0011111111 11122333456788878779999999987522         1122233   345778888888999888


Q ss_pred             EcCCCeEEEEEECCCCc--eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccc
Q 015198          234 ASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTE  311 (411)
Q Consensus       234 ~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~  311 (411)
                      .+.|+. |++|++.+..  .+..+.+.....--..-..+||+.+|++|+.|...++|.+.+.+..-.+            
T Consensus       289 sCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~------------  355 (720)
T KOG0321|consen  289 SCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL------------  355 (720)
T ss_pred             EecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh------------
Confidence            888999 9999997643  3333433211111223356899999999999999999999988743210            


Q ss_pred             cccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEec
Q 015198          312 LLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~  389 (411)
                                               +++                  +...+..++|.+.  ..+++++.|-.+.||.+..
T Consensus       356 -------------------------l~G------------------ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  356 -------------------------LLG------------------HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             -------------------------hhC------------------cceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence                                     111                  1123556778665  7888888899999999953

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.81  E-value=6.7e-17  Score=152.63  Aligned_cols=304  Identities=13%  Similarity=0.153  Sum_probs=213.2

Q ss_pred             eEEEEEcCC--CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           47 LISVSWNQD--YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        47 V~~l~~s~~--g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      |+++. +|.  =+.++.|+ +|.++|||+.+.+.++..  +.....|+++..+|-..+++.|-.+     |+|.+++++.
T Consensus       162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f--~~~~s~IT~ieqsPaLDVVaiG~~~-----G~ViifNlK~  233 (910)
T KOG1539|consen  162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTF--QEFFSRITAIEQSPALDVVAIGLEN-----GTVIIFNLKF  233 (910)
T ss_pred             eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEe--cccccceeEeccCCcceEEEEeccC-----ceEEEEEccc
Confidence            77764 565  24577777 999999999997776664  4777899999999999999988888     9999999999


Q ss_pred             CcEEEEEeec-CceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEe-ccCCCcceEEEccCCCceEEEEecCCCC
Q 015198          124 SRCIGEFAFR-SDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIE-TLANLRGLCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       124 ~~~~~~~~~~-~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (411)
                      ++.+.++++. +.|++++|..||..+.    ..|.+.+||++..+.+..+. .|...+....+.  +....++. .+.|+
T Consensus       234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl--~~epVl~t-a~~Dn  310 (910)
T KOG1539|consen  234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL--PGEPVLVT-AGADN  310 (910)
T ss_pred             CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceec--CCCceEee-ccCCC
Confidence            9999999985 9999999999998766    56899999998877776664 443322222221  11122222 22344


Q ss_pred             eEEEEEcC------------------------------------------------------------------------
Q 015198          198 QVRIEHFG------------------------------------------------------------------------  205 (411)
Q Consensus       198 ~i~i~~~~------------------------------------------------------------------------  205 (411)
                      .+++|..+                                                                        
T Consensus       311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~  390 (910)
T KOG1539|consen  311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST  390 (910)
T ss_pred             ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence            44443222                                                                        


Q ss_pred             ----------------------------------------Ccce-E-EE-----eccccceeEEEecCCCCEEEEEcCCC
Q 015198          206 ----------------------------------------LNMI-K-LI-----NAHDSHIACFTLTLDGLLLATASTRG  238 (411)
Q Consensus       206 ----------------------------------------~~~~-~-~~-----~~~~~~i~~l~~sp~g~~l~s~s~dg  238 (411)
                                                              .+.. . .+     +.....+++++.++.|++.+.|+..|
T Consensus       391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G  470 (910)
T KOG1539|consen  391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG  470 (910)
T ss_pred             hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC
Confidence                                                    1111 0 00     11225688899999999999999999


Q ss_pred             eEEEEEECCCCceEEEEe-CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCC
Q 015198          239 TLIRIFNTVDGTRLQEVR-RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSS  317 (411)
Q Consensus       239 ~~I~vwd~~~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (411)
                      . |.+|++.+|-....+. ...|..+|++++...-++.+++++.+|.+++||+.++.....+...               
T Consensus       471 ~-Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~---------------  534 (910)
T KOG1539|consen  471 T-IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG---------------  534 (910)
T ss_pred             e-EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC---------------
Confidence            9 9999999998888883 2338899999999999999999999999999999988744322211               


Q ss_pred             CCccccCCCCCCCCCCccccccc----------ccCcccccc--cceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEE
Q 015198          318 SFDTLISPSTGANPGSSLSFMRG----------VLPKYFSSE--WSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYR  384 (411)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~  384 (411)
                                 . ......+...          +...+++..  +....|.-+.+.....+||++ .-|++++.|+++++
T Consensus       535 -----------~-~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~  602 (910)
T KOG1539|consen  535 -----------S-SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT  602 (910)
T ss_pred             -----------C-CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence                       0 0111111100          000111111  122234444566778999999 77999999999999


Q ss_pred             EEEec
Q 015198          385 CSFDP  389 (411)
Q Consensus       385 ~~~~~  389 (411)
                      |.+..
T Consensus       603 wDlpt  607 (910)
T KOG1539|consen  603 WDLPT  607 (910)
T ss_pred             EeccC
Confidence            99986

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.81  E-value=2.3e-18  Score=148.77  Aligned_cols=205  Identities=15%  Similarity=0.182  Sum_probs=155.9

Q ss_pred             ecCceeEEEEcCCe--EEEE---EcCeEEEEEcC----------------CceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          132 FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFV----------------DLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       132 ~~~~i~~~~~~~~~--~~~~---~dg~i~iwd~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      |.+.++.+...+-+  .+.+   ..|.|+||++.                ..+.+.++.+|...-..++|++...+.++ 
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll-  228 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL-  228 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc-
Confidence            55666666655543  2333   68999999983                13456677777765566666665555444 


Q ss_pred             EecCCCCeEEEEEcCCcc----eEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          191 CPGLQRGQVRIEHFGLNM----IKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~----~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                       +|.--+.|++|......    ...+.+|...|..++|||.. ..|++++-||. |+|||++.+.....+....|.+.|+
T Consensus       229 -sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  229 -SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             -cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCcee
Confidence             57667788888765422    23466799999999999965 48899999999 9999999984332222234888999


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcc
Q 015198          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKY  345 (411)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (411)
                      -|.|+.+..+||+|+.||+++|||++.-+..                                                 
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~-------------------------------------------------  337 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSG-------------------------------------------------  337 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCC-------------------------------------------------
Confidence            9999998889999999999999999986632                                                 


Q ss_pred             cccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEecCCC
Q 015198          346 FSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDPVHG  392 (411)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~~~~  392 (411)
                          .++++|+.+...++.+.|+|+  ..|+++|.|..+-+|.|..+..
T Consensus       338 ----~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  338 ----QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             ----CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence                236789999889999999997  8899999999999999987644

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.5e-19  Score=174.47  Aligned_cols=244  Identities=16%  Similarity=0.234  Sum_probs=189.7

Q ss_pred             CCCCeEEEEEcCCCCE----EEEEe-CCcEEEEecCCC----cceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCC
Q 015198           43 DEIELISVSWNQDYGC----FAAGT-SCGFRIYNCEPF----KETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYP  112 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~----la~g~-dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~  112 (411)
                      ...+.+.|+|.+.|..    ||.|. ||.|.+||....    ..........|...|..+.|++.. .++++|+.+    
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~----  138 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD----  138 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC----
Confidence            3457799999998876    66666 999999998752    112222345788889999999865 599999988    


Q ss_pred             CCeEEEEECCCCcEEEEE---eecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC-
Q 015198          113 PTKVIIWDDHQSRCIGEF---AFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS-  184 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-  184 (411)
                       |.|.|||+.+-+.-...   .....|.+++|+..-..+.    .+|.+.|||++..+.+-.+..+.....+..+.|+| 
T Consensus       139 -geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~  217 (1049)
T KOG0307|consen  139 -GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD  217 (1049)
T ss_pred             -CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence             99999998875444333   2578899999998766555    57899999999888777776655543344444544 


Q ss_pred             -CceEEEEecCCCC--eEEEEEcCC--cceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCC
Q 015198          185 -STSVLACPGLQRG--QVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (411)
Q Consensus       185 -~~~~l~~~g~~dg--~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (411)
                       -.+++++++ +|+  .|.+|+.+.  .+++.+++|...|.++.|++.+ ++|++++.|+. |.+|+.++++.+..+.. 
T Consensus       218 ~aTql~~As~-dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~-  294 (1049)
T KOG0307|consen  218 HATQLLVASG-DDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPA-  294 (1049)
T ss_pred             CceeeeeecC-CCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCC-
Confidence             445555544 333  456698664  5778889999999999999877 79999999999 99999999999999987 


Q ss_pred             CCCcceEEEEeCCCCC-EEEEEeCCCcEEEEEcccccc
Q 015198          259 VDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       259 ~~~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~  295 (411)
                       ....+..+.|+|... .+++++-||.|.|+.+.....
T Consensus       295 -~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  295 -QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             -CCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence             567899999999766 788999999999999988763

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=2.5e-17  Score=139.99  Aligned_cols=245  Identities=13%  Similarity=0.187  Sum_probs=172.8

Q ss_pred             ccCCCCCCeEEEEEcC-----CCCEEEEEeCCcEEEEecCCCc--ceEEeecC-CCCEEEEEEec--cCC--eEEEEecC
Q 015198           39 FSDVDEIELISVSWNQ-----DYGCFAAGTSCGFRIYNCEPFK--ETFRRDLK-SGGFRIVEMLF--RCN--ILALVGAG  106 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~-----~g~~la~g~dg~i~iw~~~~~~--~~~~~~~~-~~~~~~~~~~~--~~~--~~~l~s~~  106 (411)
                      ..++|..+|..++|++     +-+.+|+.+.+.+.||+.....  ..+..... .+......+.|  ..+  .-+++.++
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            4678999999999995     2346677778899999987544  22222221 13333333333  322  34556555


Q ss_pred             CCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEe---ccCCCcceE
Q 015198          107 DNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIE---TLANLRGLC  178 (411)
Q Consensus       107 ~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~  178 (411)
                      .-     |.|+|.|+.++++...+. |...|+.+.+.|+...++    .|..|++|++++..++..+.   +|..  .++
T Consensus       113 ~~-----GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd--eVL  185 (385)
T KOG1034|consen  113 YL-----GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD--EVL  185 (385)
T ss_pred             ce-----eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC--cEE
Confidence            65     999999999999999988 999999999999874333    79999999999999998884   4544  677


Q ss_pred             EEccCCCceEEEEecCCCCeEEEEEcCCcce-----------------------E------EEeccccceeEEEecCCCC
Q 015198          179 CLSHHSSTSVLACPGLQRGQVRIEHFGLNMI-----------------------K------LINAHDSHIACFTLTLDGL  229 (411)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-----------------------~------~~~~~~~~i~~l~~sp~g~  229 (411)
                      ++.++.++..|++ ++.|.++++|..+.+..                       .      ....|...|-|+.|  -|.
T Consensus       186 SvD~~~~gd~i~S-cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd  262 (385)
T KOG1034|consen  186 SVDFSLDGDRIAS-CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGD  262 (385)
T ss_pred             EEEEcCCCCeeec-cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hhh
Confidence            7778888888876 55899999999873110                       0      11235566666666  367


Q ss_pred             EEEEEcCCCeEEEEEEC-CCCc-------------eEEEEeCCCCCcceEEEE--eCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          230 LLATASTRGTLIRIFNT-VDGT-------------RLQEVRRGVDRAEIYSIA--LSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       230 ~l~s~s~dg~~I~vwd~-~~~~-------------~~~~~~~~~~~~~v~~l~--~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      ++++=+-++. |..|.. +-++             .+.++.-  ....|+-+.  |.|-+++||.|...|.|++||++..
T Consensus       263 ~ilSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~  339 (385)
T KOG1034|consen  263 FILSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN  339 (385)
T ss_pred             heeecccCce-EEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence            8888888888 999976 2111             1223332  334555554  4566789999999999999999988


Q ss_pred             ccC
Q 015198          294 VVG  296 (411)
Q Consensus       294 ~~~  296 (411)
                      +..
T Consensus       340 ep~  342 (385)
T KOG1034|consen  340 EPP  342 (385)
T ss_pred             CCc
Confidence            753

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=6.5e-18  Score=139.43  Aligned_cols=238  Identities=14%  Similarity=0.152  Sum_probs=164.6

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      .+.+|.+.|+++.|-.+++ |.+|. .|.|.+|.+.+........+ .+...+..+..-++ ..+.+-+.|     ..+.
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~p~-d~l~tqgRd-----~~L~   80 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSIPN-DSLDTQGRD-----PLLI   80 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh-hccceeeceeecCC-cchhhcCCC-----ceEE
Confidence            3558999999999988776 77777 99999999988665554443 45666777766666 445565666     8888


Q ss_pred             EEECCCCcEEEEEe------------------------------------------------------ecCceeEEEEcC
Q 015198          118 IWDDHQSRCIGEFA------------------------------------------------------FRSDVRSVKLSR  143 (411)
Q Consensus       118 vwd~~~~~~~~~~~------------------------------------------------------~~~~i~~~~~~~  143 (411)
                      +|++.-+..+..-.                                                      ..+.+.+..+..
T Consensus        81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~  160 (323)
T KOG0322|consen   81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH  160 (323)
T ss_pred             EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence            88865432211100                                                      002233333221


Q ss_pred             -CeEE-EE----EcCeEEEEEcCCceee----------EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc
Q 015198          144 -DRIV-VV----LEHKIYVYSFVDLKLL----------HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN  207 (411)
Q Consensus       144 -~~~~-~~----~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~  207 (411)
                       ++.. ++    .+|.+.+||+.++..+          ..+..|..++..+.++..-++..   +|+.+..+..|..+..
T Consensus       161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi---sgga~dkl~~~Sl~~s  237 (323)
T KOG0322|consen  161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI---SGGADDKLVMYSLNHS  237 (323)
T ss_pred             cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc---CCCccccceeeeeccc
Confidence             1222 22    6899999999887333          33344555555555554333211   3555556666655432


Q ss_pred             -----ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198          208 -----MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK  282 (411)
Q Consensus       208 -----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d  282 (411)
                           ....+...+-.|..+.+-||++.+|+++.|+. ||||..++..++..++-  |.+.|++++|+|+..++|+++.|
T Consensus       238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD  314 (323)
T KOG0322|consen  238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKD  314 (323)
T ss_pred             cCcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccCC
Confidence                 12233344566888999999999999999999 99999999999999988  88999999999999999999999


Q ss_pred             CcEEEEEc
Q 015198          283 GTVHIFSL  290 (411)
Q Consensus       283 g~I~vwd~  290 (411)
                      ++|.+|++
T Consensus       315 ~rISLWkL  322 (323)
T KOG0322|consen  315 ARISLWKL  322 (323)
T ss_pred             ceEEeeec
Confidence            99999997

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=6e-19  Score=171.90  Aligned_cols=278  Identities=14%  Similarity=0.194  Sum_probs=195.2

Q ss_pred             EEEEEcCCCC-EEEEEe-----------CCcEEEEecCCCcce----EEeecCCCCEEEEEEeccCCeE----EEEecCC
Q 015198           48 ISVSWNQDYG-CFAAGT-----------SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNIL----ALVGAGD  107 (411)
Q Consensus        48 ~~l~~s~~g~-~la~g~-----------dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~l~s~~~  107 (411)
                      -.++|+|++. ++|+|.           +.++.||.++.....    ....+ ........+.|.+.+.    ++++|.+
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeecccc
Confidence            3578999886 566554           234456655422111    11111 3344566777776543    4888888


Q ss_pred             CCCCCCCeEEEEECCC---CcE---EEEEe-ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeEEEeccCCCcc
Q 015198          108 NSQYPPTKVIIWDDHQ---SRC---IGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRG  176 (411)
Q Consensus       108 d~~~~d~~i~vwd~~~---~~~---~~~~~-~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~  176 (411)
                      |     |.|.+||...   +..   +.... |.+.|..+.|++... +++   .||.|.|||+...+.-...........
T Consensus        89 d-----G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e  163 (1049)
T KOG0307|consen   89 D-----GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE  163 (1049)
T ss_pred             C-----CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence            8     9999999654   322   33333 999999999999766 666   789999999987554444433333446


Q ss_pred             eEEEccCCCceEEEEecCCCCeEEEEEcCCc-ceEEEeccc--cceeEEEecCCCC-EEEEEcCCCe--EEEEEECCCC-
Q 015198          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINAHD--SHIACFTLTLDGL-LLATASTRGT--LIRIFNTVDG-  249 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~--~~i~~l~~sp~g~-~l~s~s~dg~--~I~vwd~~~~-  249 (411)
                      +.+++|+.+...++++++.+|.+.|||.+.+ .+..+..+.  ..+..++|+|+.. .|++++.|..  .|.+||++.- 
T Consensus       164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as  243 (1049)
T KOG0307|consen  164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS  243 (1049)
T ss_pred             ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence            7888998887777788889999999998765 444454443  3577899999874 5666665542  4999998865 


Q ss_pred             ceEEEEeCCCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCC
Q 015198          250 TRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTG  328 (411)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (411)
                      ..++++..  |...|.++.|++.+ ++|++++.|+.|.+|+.++++...++...                          
T Consensus       244 sP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--------------------------  295 (1049)
T KOG0307|consen  244 SPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--------------------------  295 (1049)
T ss_pred             Cchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--------------------------
Confidence            45666766  88899999999866 88999999999999999998865322221                          


Q ss_pred             CCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEec
Q 015198          329 ANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~  389 (411)
                                                    ..-...+.|.+.  ..+.+++-||.|-||++..
T Consensus       296 ------------------------------~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  296 ------------------------------GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             ------------------------------CcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence                                          122345778887  5677777799999999985

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.79  E-value=8.1e-18  Score=154.37  Aligned_cols=251  Identities=13%  Similarity=0.087  Sum_probs=175.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCe
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTK  115 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~  115 (411)
                      .....|...|..+.|.|...+|++++ |.++++||++..+..-...+-+|...+.+++|.+ +-..+++|+.|     |.
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRD-----g~  168 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRD-----GE  168 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCC-----Cc
Confidence            34567999999999999666778887 9999999999765443323348888899999997 45788899998     99


Q ss_pred             EEEEECCCCc--------------------EEEEE--------eecCceeE---EEEcCCeEEEE----EcCeEEEEEcC
Q 015198          116 VIIWDDHQSR--------------------CIGEF--------AFRSDVRS---VKLSRDRIVVV----LEHKIYVYSFV  160 (411)
Q Consensus       116 i~vwd~~~~~--------------------~~~~~--------~~~~~i~~---~~~~~~~~~~~----~dg~i~iwd~~  160 (411)
                      |.|||++-..                    ....+        .+...|.+   +.+..|...++    .|+.|++||++
T Consensus       169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR  248 (720)
T KOG0321|consen  169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR  248 (720)
T ss_pred             EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence            9999965322                    00000        02233444   44455555555    59999999997


Q ss_pred             CceeeEEE------ecc---CCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc---ceEEEeccccc--eeEEEecC
Q 015198          161 DLKLLHQI------ETL---ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSH--IACFTLTL  226 (411)
Q Consensus       161 ~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~--i~~l~~sp  226 (411)
                      ........      ..+   ......+++..+..|.+|.+.+ .|+.|++|+....   ++..+.++...  -..-..+|
T Consensus       249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp  327 (720)
T KOG0321|consen  249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP  327 (720)
T ss_pred             ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCC
Confidence            65432221      111   1234677888888788887755 6999999987753   33333333211  11224689


Q ss_pred             CCCEEEEEcCCCeEEEEEECCCCceEE-EEeCCCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEEccccccCC
Q 015198          227 DGLLLATASTRGTLIRIFNTVDGTRLQ-EVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~-~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      ++.+|++|+.|.. .++|.+.+.+.-- .+.+  |.-.|++++|.|.. .-++++++|..++||++..+-+..
T Consensus       328 d~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~  397 (720)
T KOG0321|consen  328 DDCSLLSGSSDEQ-AYIWVVSSPEAPPALLLG--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI  397 (720)
T ss_pred             CCceEeccCCCcc-eeeeeecCccCChhhhhC--cceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence            9999999999999 9999998876533 3444  77899999998743 236777999999999997765443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.78  E-value=6.9e-18  Score=150.56  Aligned_cols=215  Identities=12%  Similarity=0.160  Sum_probs=175.4

Q ss_pred             eEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        47 V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      -.|++......|+++|+ .+.|+|||+.  .+...+.+++|...+..+.|.....++++++..     |.|.|..+.++.
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~--~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~g-----Gdiiih~~~t~~  154 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLR--AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDG-----GDIIIHGTKTKQ  154 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhH--HHHHhhhccCCcceeEEEEecCCcceeEEeccC-----CcEEEEecccCc
Confidence            34555555567899988 9999999998  444555577899999999999999999999988     999999999998


Q ss_pred             EEEEEee--cCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEE-eccCCCcceEEEccCCCceEEEEecCCCCe
Q 015198          126 CIGEFAF--RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (411)
Q Consensus       126 ~~~~~~~--~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (411)
                      ...++.+  ...|.-+.|++..+.+.    .+|.|.+||+.....+..+ +.|..+...+||++... .+|+..| .|..
T Consensus       155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne-~l~vsVG-~Dkk  232 (673)
T KOG4378|consen  155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE-ALLVSVG-YDKK  232 (673)
T ss_pred             cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc-ceEEEec-ccce
Confidence            8888885  45677899999877766    7899999999877666554 66788778888888765 3455545 8999


Q ss_pred             EEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc-eEEEEeCCCCCcceEEEEeCCCC
Q 015198          199 VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNV  273 (411)
Q Consensus       199 i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg  273 (411)
                      |.+++...+..........+...++|.++|.+|++|+..|. |..||++..+ ++..+..  |...|++++|-|..
T Consensus       233 i~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~-~i~YD~R~~k~Pv~v~sa--h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  233 INIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGE-LIAYDMRSTKAPVAVRSA--HDASVTRVAFQPSP  305 (673)
T ss_pred             EEEeecccccccceeeecCCcceeeecCCceEEEeecCCce-EEEEecccCCCCceEeee--cccceeEEEeeecc
Confidence            99988887666555667889999999999999999999999 9999998654 5666666  78889999998754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.1e-17  Score=138.71  Aligned_cols=193  Identities=13%  Similarity=0.104  Sum_probs=152.6

Q ss_pred             EEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceee
Q 015198           90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL  165 (411)
Q Consensus        90 ~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~  165 (411)
                      ..++.|++.|.+++.|..+     |.|.|||+.+...-+.+. |..+|.+++|+++|+.++   .|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccC-----CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence            6788899999999999988     999999999988777777 999999999999999988   7999999999999999


Q ss_pred             EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEec-c----ccceeEEEecCCCCEEEEEcCCCeE
Q 015198          166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA-H----DSHIACFTLTLDGLLLATASTRGTL  240 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~-~----~~~i~~l~~sp~g~~l~s~s~dg~~  240 (411)
                      +.+.- ..++..+.+.+..++..+++--  +..-.+-.........+.. .    +..-.+..|.+.|+++++|...|. 
T Consensus       101 ~rirf-~spv~~~q~hp~k~n~~va~~~--~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk-  176 (405)
T KOG1273|consen  101 KRIRF-DSPVWGAQWHPRKRNKCVATIM--EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK-  176 (405)
T ss_pred             eEEEc-cCccceeeeccccCCeEEEEEe--cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-
Confidence            88875 4567888888888877776542  2222221111111111111 1    111223458899999999999999 


Q ss_pred             EEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      +.++|..+.+++..++.. ....|..+.++..|++|+.-+.|..|+.|+++.
T Consensus       177 llv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  177 LLVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD  227 (405)
T ss_pred             EEEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence            999999999999888863 236899999999999999999999999999874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.77  E-value=9e-17  Score=148.88  Aligned_cols=246  Identities=12%  Similarity=0.146  Sum_probs=183.5

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEe--ecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRR--DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      ....||.+.|..++|+|.|++|++.+ |.+-|||-.-..+..+..  .-+-|.-...++.+-+....+++|.++     .
T Consensus       355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE-----K  429 (764)
T KOG1063|consen  355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE-----K  429 (764)
T ss_pred             cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc-----e
Confidence            34789999999999999999999998 999999875422222211  012455556666676656667777766     7


Q ss_pred             eEEEEECCC-------------------------------------------CcE----E--------------------
Q 015198          115 KVIIWDDHQ-------------------------------------------SRC----I--------------------  127 (411)
Q Consensus       115 ~i~vwd~~~-------------------------------------------~~~----~--------------------  127 (411)
                      .+|+++...                                           |..    .                    
T Consensus       430 VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL  509 (764)
T KOG1063|consen  430 VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL  509 (764)
T ss_pred             eeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence            777776321                                           000    0                    


Q ss_pred             ----------EEEeecCceeEEEEcCCeEEEE--------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          128 ----------GEFAFRSDVRSVKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       128 ----------~~~~~~~~i~~~~~~~~~~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                                +.+.|.-.|.+++.+|++++++        ....|++|+..+-...+.+..|.-  ++..+.+++++++|
T Consensus       510 q~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL--TVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  510 QQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL--TVTRLAFSPDGRYL  587 (764)
T ss_pred             HHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce--EEEEEEECCCCcEE
Confidence                      0011345799999999999998        356799999988888888887765  77788888888898


Q ss_pred             EEecCCCCeEEEEEcCCcc-----eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC--ceEEEEeCCCCCc
Q 015198          190 ACPGLQRGQVRIEHFGLNM-----IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TRLQEVRRGVDRA  262 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~~~-----~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~~~~~~~~~~~~  262 (411)
                      ++. +.|.++.+|......     ....+.|..-|.+..|+|++.+++|+|.|.. |++|.....  +.+..+....+..
T Consensus       588 Lsv-sRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~-VkVW~~~~~~d~~i~~~a~~~~~~  665 (764)
T KOG1063|consen  588 LSV-SRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK-VKVWEEPDLRDKYISRFACLKFSL  665 (764)
T ss_pred             EEe-ecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce-EEEEeccCchhhhhhhhchhccCC
Confidence            875 589999998765422     2336789999999999999999999999999 999998877  5554433333677


Q ss_pred             ceEEEEeCC-----CCCEEEEEeCCCcEEEEEccc
Q 015198          263 EIYSIALSP-----NVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       263 ~v~~l~~sp-----dg~~l~s~s~dg~I~vwd~~~  292 (411)
                      .|+.++|.|     .+..+++|-..|.|.+|....
T Consensus       666 aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~  700 (764)
T KOG1063|consen  666 AVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR  700 (764)
T ss_pred             ceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence            899999986     233788999999999999763

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=3e-18  Score=160.39  Aligned_cols=239  Identities=14%  Similarity=0.144  Sum_probs=179.5

Q ss_pred             eEEEEEcC-CCCEEEEEe-CCcEEEEecCCC-cceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECC
Q 015198           47 LISVSWNQ-DYGCFAAGT-SCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        47 V~~l~~s~-~g~~la~g~-dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      +..|+|+. +.++||+++ .|.|.+||+... ...+...|..|...+..+.|++ .-.++++|+.|     |+|++||++
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQD-----g~vK~~DlR  164 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQD-----GTVKCWDLR  164 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCC-----ceEEEEeee
Confidence            45567764 367899999 999999999862 2222233568888999999987 45788999998     999999999


Q ss_pred             CCcEEEEEe-ecCceeEEEEcCCe-EEEE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          123 QSRCIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       123 ~~~~~~~~~-~~~~i~~~~~~~~~-~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      ..+...++. ....|.+++|+|.. ..++   ..|.+.+||++.. ++...+..|.+++  .++.++|++.+||+ |+.|
T Consensus       165 ~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV--~c~nwhPnr~~lAT-GGRD  241 (839)
T KOG0269|consen  165 SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV--LCLNWHPNREWLAT-GGRD  241 (839)
T ss_pred             cccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce--EEEeecCCCceeee-cCCC
Confidence            998888877 67899999999843 2333   6799999999764 5667778888855  45555566678875 6699


Q ss_pred             CeEEEEEcCCcceE-EEe-ccccceeEEEecCCCCE-EEEEc--CCCeEEEEEECCCCc-eEEEEeCCCCCcceEEEEeC
Q 015198          197 GQVRIEHFGLNMIK-LIN-AHDSHIACFTLTLDGLL-LATAS--TRGTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       197 g~i~i~~~~~~~~~-~~~-~~~~~i~~l~~sp~g~~-l~s~s--~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~s  270 (411)
                      +.|+||+.+..... ... ....++.+++|-|...+ ||+++  .|-. |+|||++-.- +..++..  |...++.++|.
T Consensus       242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts-V~VWDvrRPYIP~~t~~e--H~~~vt~i~W~  318 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS-VHVWDVRRPYIPYATFLE--HTDSVTGIAWD  318 (839)
T ss_pred             ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccce-EEEEeeccccccceeeec--cCccccceecc
Confidence            99999998853322 222 23578999999998764 56554  3566 9999997653 3456666  88899999996


Q ss_pred             C-CCCEEEEEeCCCcEEEEEccccccC
Q 015198          271 P-NVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       271 p-dg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      . |-..|.+++.||+|..-.+++....
T Consensus       319 ~~d~~~l~s~sKD~tv~qh~~knat~p  345 (839)
T KOG0269|consen  319 SGDRINLWSCSKDGTVLQHLFKNATTP  345 (839)
T ss_pred             CCCceeeEeecCccHHHHhhhhcccCh
Confidence            5 4567889999999887777766543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=9.1e-17  Score=140.22  Aligned_cols=251  Identities=16%  Similarity=0.127  Sum_probs=178.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecC--------C------CcceEEeecCCCCEEEEEEeccCCeEEE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCE--------P------FKETFRRDLKSGGFRIVEMLFRCNILAL  102 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~--------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l  102 (411)
                      ..+..|...|+++.|+|+|++||+|+ +|.|.+|...        +      ...+..+.+.+|...+..++|++++.++
T Consensus        59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l  138 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL  138 (434)
T ss_pred             ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence            45788999999999999999999999 8999999876        2      1123344456788899999999999999


Q ss_pred             EecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEe---------
Q 015198          103 VGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE---------  169 (411)
Q Consensus       103 ~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~---------  169 (411)
                      ++++-|     +.+++||+..|+.+..+. |...+..++|.|-+++++   .|...+.+.+...+.++...         
T Consensus       139 ~s~s~d-----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~  213 (434)
T KOG1009|consen  139 VSGSVD-----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF  213 (434)
T ss_pred             eeeecc-----ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence            999998     999999999999999887 999999999999999888   46656666554332222111         


Q ss_pred             ------------ccCCCcceEEEccCCCceEEEEecC---CCCeE--EE-EEcCC----cceEEEeccccceeEEEecC-
Q 015198          170 ------------TLANLRGLCCLSHHSSTSVLACPGL---QRGQV--RI-EHFGL----NMIKLINAHDSHIACFTLTL-  226 (411)
Q Consensus       170 ------------~~~~~~~~~~~~~~~~~~~l~~~g~---~dg~i--~i-~~~~~----~~~~~~~~~~~~i~~l~~sp-  226 (411)
                                  ...-+.....+++.|+|.+++...+   ..+.+  .. +....    ++...+.....+...+.|+| 
T Consensus       214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV  293 (434)
T KOG1009|consen  214 NEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV  293 (434)
T ss_pred             CCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeee
Confidence                        1111112334566778877765321   11122  11 22222    33344444445555555544 


Q ss_pred             -----------------CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          227 -----------------DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       227 -----------------~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                                       -+..+|.++.+ . |+|||.++.+++..+..- |-..|+.++|++||..|+..+.||...+--
T Consensus       294 y~elrp~~~~~~~~~lpyrlvfaiAt~~-s-vyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vt  370 (434)
T KOG1009|consen  294 YYELRPLSSEKFLFVLPYRLVFAIATKN-S-VYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVT  370 (434)
T ss_pred             EEEeccccccccccccccceEEEEeecc-e-EEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEE
Confidence                             23345666655 4 999999998888766544 778999999999999999999999888887


Q ss_pred             ccccccC
Q 015198          290 LRVRVVG  296 (411)
Q Consensus       290 ~~~~~~~  296 (411)
                      ++..+..
T Consensus       371 fe~~elg  377 (434)
T KOG1009|consen  371 FEPWELG  377 (434)
T ss_pred             Ecchhcc
Confidence            7776544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.1e-16  Score=137.38  Aligned_cols=308  Identities=12%  Similarity=0.052  Sum_probs=207.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc-----ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-----ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      ....+|.+.|+++.|+.++++|++|+ |..+++|+++..-     +.....-+.|...|.++.|......+.+|+.+   
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~---  126 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW---  126 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc---
Confidence            34678999999999999999999999 9999999987311     11112123566889999999999999999988   


Q ss_pred             CCCeEEEEECCCCcEEEEEeec---CceeEEEEcCCeEEEE---EcCeEEEEEcCCce-eeEEEeccCCCcceEEEccCC
Q 015198          112 PPTKVIIWDDHQSRCIGEFAFR---SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHS  184 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~  184 (411)
                        ++|.+.|+++.+.+..+.+.   +.|+.+..+|....++   .++.|.+||.+... ....+-....+......-++|
T Consensus       127 --~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  127 --GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             --ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence              99999999999999988854   5999999999766665   78999999997644 333232222223344445555


Q ss_pred             CceEEEEecCCCCeEEEEEcCCcceEE--------EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce-EEEE
Q 015198          185 STSVLACPGLQRGQVRIEHFGLNMIKL--------INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEV  255 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i~~~~~~~~~~--------~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~  255 (411)
                      ....|+.+.+..+-+-+|+........        +......-..+.|+|+|..|++--.... -.+||+.+..+ +..+
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~-P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC-PLYFDFISQRCFVLKS  283 (609)
T ss_pred             CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC-CEEeeeecccceeEec
Confidence            555566667788889999887643211        1111223457889999998887766666 66888876543 2233


Q ss_pred             e----CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCC
Q 015198          256 R----RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP  331 (411)
Q Consensus       256 ~----~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (411)
                      .    +......+.+++|..|- .+++|+.+-.|++|.+.......                                  
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~----------------------------------  328 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSY----------------------------------  328 (609)
T ss_pred             cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCcccc----------------------------------
Confidence            2    11112357788887664 48999999999999997644221                                  


Q ss_pred             CCccccccc---ccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198          332 GSSLSFMRG---VLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       332 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~  388 (411)
                        .+..+++   .+|.-+--+..+.-++-+...+.-+.|+++ ..|+..|-+..+.+|+-.
T Consensus       329 --G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  329 --GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             --CccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence              1111221   122211112233445555566777889998 555555668999998643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.75  E-value=4.3e-17  Score=150.40  Aligned_cols=241  Identities=17%  Similarity=0.207  Sum_probs=186.1

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        35 ~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      .+++.+.+|.+.|+|++|+.||+++|+|+ |..|.+|+-.- +..++.   .|...+.+|.|+|-...+++++-      
T Consensus        44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY---SH~D~IQCMsFNP~~h~LasCsL------  113 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY---SHNDAIQCMSFNPITHQLASCSL------  113 (1081)
T ss_pred             ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee---ccCCeeeEeecCchHHHhhhcch------
Confidence            35567899999999999999999999999 99999998653 334443   68889999999999999999887      


Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEec---cCCCcceEEEccCCC--
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET---LANLRGLCCLSHHSS--  185 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~--  185 (411)
                      ...-+|.... +.+...+....+.+.+|..||++++   .+|+|.+-+ .+++..-.+..   ...++..++++++..  
T Consensus       114 sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G  191 (1081)
T KOG1538|consen  114 SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEG  191 (1081)
T ss_pred             hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCC
Confidence            6778898443 3444455667889999999999999   799999987 44444444433   445566666666531  


Q ss_pred             -ceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcce
Q 015198          186 -TSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (411)
Q Consensus       186 -~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (411)
                       ...+++ .....++.++..+++.+..-+.-.-...|+.+-++|.++..|+.|+. +.+|- +.|-.+.++..  ....|
T Consensus       192 ~~di~aV-~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg~--~D~WI  266 (1081)
T KOG1538|consen  192 RNDILAV-ADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVGE--QDSWI  266 (1081)
T ss_pred             ccceEEE-EeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeeccc--cceeE
Confidence             123333 33555666666666655544444556678999999999999999999 99995 68888878766  56699


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          265 YSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      +.++..|++++++.|+.||+|.-|++-.
T Consensus       267 WtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  267 WTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEEEEccCCceEEEEEccCeeehhhhHH
Confidence            9999999999999999999999998754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=3e-16  Score=131.26  Aligned_cols=302  Identities=12%  Similarity=0.161  Sum_probs=196.1

Q ss_pred             CCEEEEEe-----CCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCC--CCeEEEEECCCC--
Q 015198           56 YGCFAAGT-----SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYP--PTKVIIWDDHQS--  124 (411)
Q Consensus        56 g~~la~g~-----dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~--d~~i~vwd~~~~--  124 (411)
                      .-.|++|.     |+.|.+.+++.... +....|..+...+..+.-+| +..+|+++-.+....  -..+.||.+...  
T Consensus        26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~  105 (370)
T KOG1007|consen   26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG  105 (370)
T ss_pred             ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence            33555555     78888888775332 33333445666777777776 344555443321100  135789986543  


Q ss_pred             -------cEEEEEe--ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCcee-eEEEec-----cCCCcceEEEccCCCce
Q 015198          125 -------RCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKL-LHQIET-----LANLRGLCCLSHHSSTS  187 (411)
Q Consensus       125 -------~~~~~~~--~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~  187 (411)
                             +++..+.  +-+.|.|+.|.|++..++  .|..|.+|++..+.. +..+..     +......-.++|+.++.
T Consensus       106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn  185 (370)
T KOG1007|consen  106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN  185 (370)
T ss_pred             ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence                   2233333  346899999999988877  799999999976654 333322     22333455678877888


Q ss_pred             EEEEecCCCCeEEEEEcCC-cceE-EEeccccceeEEEecCCCC-EEEEEcCCCeEEEEEECCCC-ceEEEEeCCCCCcc
Q 015198          188 VLACPGLQRGQVRIEHFGL-NMIK-LINAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAE  263 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~-~~~~-~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~  263 (411)
                      .++++  .|+++..|+.+. ++.. .-.+|...|..+.|+|+.+ +|++++.||. |+|||.+.- .+++++.+  |...
T Consensus       186 qv~tt--~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk~pv~el~~--HsHW  260 (370)
T KOG1007|consen  186 QVATT--SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTKFPVQELPG--HSHW  260 (370)
T ss_pred             eEEEe--CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCCccccccCC--CceE
Confidence            88776  589999988764 2222 3357888999999999987 6889999999 999999865 46777777  7779


Q ss_pred             eEEEEeCCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccccccccc
Q 015198          264 IYSIALSPN-VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL  342 (411)
Q Consensus       264 v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (411)
                      |+++.|+|. .++|++++.|..|.+|....-....++.-+++                  .+-..+.........+    
T Consensus       261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~d------------------ese~e~~dseer~kpL----  318 (370)
T KOG1007|consen  261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDD------------------ESESEDEDSEERVKPL----  318 (370)
T ss_pred             EEEEEecCccceEEEecCCCceeEEEeccccccccccccccc------------------cccCcchhhHHhcccc----
Confidence            999999985 46788999999999998776553332222211                  0000000000000111    


Q ss_pred             CcccccccceEEEEeCCCceEEEEEccC-CE-EEEEEeCCcEEEEEEec
Q 015198          343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NT-VVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~dg~~~~~~~~~  389 (411)
                      +     ...+.++.-.++.++.++|+.- .- ++.-+.||++.|-++..
T Consensus       319 ~-----dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  319 Q-----DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             c-----ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            1     1123455666689999999876 43 45556699999988775

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.75  E-value=6.7e-17  Score=148.32  Aligned_cols=98  Identities=21%  Similarity=0.345  Sum_probs=86.3

Q ss_pred             CCCeEEEEEcCC--------cceEEEeccccceeEEEecCC-CCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          195 QRGQVRIEHFGL--------NMIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       195 ~dg~i~i~~~~~--------~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                      .||.|++|....        .+...++.|...|+++.|+|- ...|++++.|.+ |++||+.+++....+.+  |.+.|.
T Consensus       648 ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~~~~~~l~g--HtdqIf  724 (1012)
T KOG1445|consen  648 DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANAKLYSRLVG--HTDQIF  724 (1012)
T ss_pred             cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhhhhhheecc--CcCcee
Confidence            677888876643        345678899999999999985 358899999999 99999999999989998  889999


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      +++|||||+.+|+.+.||+|+||+-++++.
T Consensus       725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             EEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            999999999999999999999999888764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=6.3e-16  Score=136.46  Aligned_cols=236  Identities=11%  Similarity=0.054  Sum_probs=161.6

Q ss_pred             EEEEEcCCCCEEEEEe--CC--cEEEEecCCCcceEEeecCCCCEE----EEEEecc-------CCeEEEEecCCCCCCC
Q 015198           48 ISVSWNQDYGCFAAGT--SC--GFRIYNCEPFKETFRRDLKSGGFR----IVEMLFR-------CNILALVGAGDNSQYP  112 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~--dg--~i~iw~~~~~~~~~~~~~~~~~~~----~~~~~~~-------~~~~~l~s~~~d~~~~  112 (411)
                      -.+..-|+..+++++.  ++  .+.+|-.+.....+-.   .|..-    .+++.|.       ..+.+++.|..+    
T Consensus       129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYv---HHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmd----  201 (463)
T KOG0270|consen  129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYV---HHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMD----  201 (463)
T ss_pred             ccceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeE---ecceeccCcchhhhhhhcCCCCCCCcceEEEeccC----
Confidence            4456678788888887  32  2334433332211111   12111    1222222       236788888888    


Q ss_pred             CCeEEEEECCCCc---EEEEE-------------------eecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeE
Q 015198          113 PTKVIIWDDHQSR---CIGEF-------------------AFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH  166 (411)
Q Consensus       113 d~~i~vwd~~~~~---~~~~~-------------------~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~  166 (411)
                       ..|.|||+.-..   +...+                   .|...|.++.|+..-+.++    .|.+|++||+.++++..
T Consensus       202 -p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~  280 (463)
T KOG0270|consen  202 -PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS  280 (463)
T ss_pred             -ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce
Confidence             899999964211   10011                   1566778888888765554    79999999999999999


Q ss_pred             EEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCC-EEEEEcCCCeEEEEE
Q 015198          167 QIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIRIF  244 (411)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vw  244 (411)
                      .+..|...+..+.|.+.  ...++.+|+.|++|.+.+.+ .......-...+.|-.++|.|... .++++..||. |+-+
T Consensus       281 s~~~~~k~Vq~l~wh~~--~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~-v~~~  357 (463)
T KOG0270|consen  281 SITHHGKKVQTLEWHPY--EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT-VYYF  357 (463)
T ss_pred             ehhhcCCceeEEEecCC--CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce-EEee
Confidence            99988886665555554  34444579999999995544 222222222457788999998765 5677788999 9999


Q ss_pred             ECCCC-ceEEEEeCCCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEEccccccC
Q 015198          245 NTVDG-TRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       245 d~~~~-~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      |++.. +++.++..  |.++|.+|++++.- .+|++++.|+.|++|++...+..
T Consensus       358 D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~  409 (463)
T KOG0270|consen  358 DIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK  409 (463)
T ss_pred             ecCCCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence            99875 88999988  88999999999754 47889999999999999876643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=2.6e-14  Score=135.39  Aligned_cols=246  Identities=18%  Similarity=0.297  Sum_probs=186.3

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc-ceEEeecCCCCEEEEEEec-cCCeE-EEEecCC-CCCCCC
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLF-RCNIL-ALVGAGD-NSQYPP  113 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~l~s~~~-d~~~~d  113 (411)
                      ....|...|.++.+.+.+..++.++ ++.+.+|+..... ....... .+...+..+.. .+++. .++..+. +     
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d-----  133 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEG-LHDSSVSKLALSSPDGNSILLASSSLD-----  133 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEec-cCCCceeeEEEECCCcceEEeccCCCC-----
Confidence            4568999999999999999999998 9999999998754 2222221 12123333333 66555 4444333 5     


Q ss_pred             CeEEEEECCC-CcEEEEEe-ecCceeEEEEcCCeEEEE---E-cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          114 TKVIIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV---L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       114 ~~i~vwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~---~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      +.+.+|+... ......+. |...|..+.|+|++..++   . |+.+++|++..++.+..+..|...+..+.+.  +++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~  211 (466)
T COG2319         134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS--PDGG  211 (466)
T ss_pred             ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc--CCcc
Confidence            9999999887 66666665 889999999999997665   3 8999999999888888888877755655555  5555


Q ss_pred             EEEEecCCCCeEEEEEcCC-cceE-EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce-EEEEeCCCCCcce
Q 015198          188 VLACPGLQRGQVRIEHFGL-NMIK-LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEI  264 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~-~~~~-~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v  264 (411)
                      .++.+++.|+.|++|+... .... .+..|.... ...|++++.++++++.|+. +++|++..... +..+..  |...+
T Consensus       212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~--~~~~v  287 (466)
T COG2319         212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSG--HSSSV  287 (466)
T ss_pred             eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEec--CCccE
Confidence            4444457899999997663 3344 477777775 4489999999999999999 99999987765 444433  67899


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      .++.|.|++..+++++.|+.+.+|++.+....
T Consensus       288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  319 (466)
T COG2319         288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLL  319 (466)
T ss_pred             EEEEECCCCCEEEEeeCCCcEEEEEcCCCceE
Confidence            99999998898888999988999988877644

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=2e-15  Score=127.43  Aligned_cols=266  Identities=14%  Similarity=0.161  Sum_probs=177.2

Q ss_pred             CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC----cEEEEEe-ecCceeEEEEcC--CeEEEE---EcCeE
Q 015198           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA-FRSDVRSVKLSR--DRIVVV---LEHKI  154 (411)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~----~~~~~~~-~~~~i~~~~~~~--~~~~~~---~dg~i  154 (411)
                      +|..-+.++.|+.-|..+++|+.|     ++|+|||.++.    .+....+ |.+.|..+.|.+  -|+.++   .|+++
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsD-----q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSD-----QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCC-----CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            566778889999999999999998     99999996443    2333444 899999999975  367777   89999


Q ss_pred             EEEEcCC---------ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-------cceEEE------
Q 015198          155 YVYSFVD---------LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-------NMIKLI------  212 (411)
Q Consensus       155 ~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------~~~~~~------  212 (411)
                      .||.-..         -.....+......+..+.|+|..-|..||+ .+.||.++|+....       .....+      
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p  164 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP  164 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence            9998511         122334455566677788888888888876 56899999965432       111122      


Q ss_pred             -eccccceeEEEecCCC---CEEEEEcCC-----CeEEEEEECCCCc----eEEEEeCCCCCcceEEEEeCCC----CCE
Q 015198          213 -NAHDSHIACFTLTLDG---LLLATASTR-----GTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPN----VQW  275 (411)
Q Consensus       213 -~~~~~~i~~l~~sp~g---~~l~s~s~d-----g~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spd----g~~  275 (411)
                       ..+..+..|+.|+|..   .+||.|+.+     +. ++||....+.    .+.++.+  |..+|++|+|.|+    -.+
T Consensus       165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d--~~dpI~di~wAPn~Gr~y~~  241 (361)
T KOG2445|consen  165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPD--HTDPIRDISWAPNIGRSYHL  241 (361)
T ss_pred             cccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCC--CCCcceeeeeccccCCceee
Confidence             2466778899999743   578888876     35 8888765432    3445555  8889999999995    347


Q ss_pred             EEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEE
Q 015198          276 LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF  355 (411)
Q Consensus       276 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (411)
                      ||+++.|| |+||++......-..+..                                  ..+..+.++  ...-+..+
T Consensus       242 lAvA~kDg-v~I~~v~~~~s~i~~ee~----------------------------------~~~~~~~~l--~v~~vs~~  284 (361)
T KOG2445|consen  242 LAVATKDG-VRIFKVKVARSAIEEEEV----------------------------------LAPDLMTDL--PVEKVSEL  284 (361)
T ss_pred             EEEeecCc-EEEEEEeeccchhhhhcc----------------------------------cCCCCcccc--ceEEeeec
Confidence            99999999 999999864321100000                                  000000000  00111223


Q ss_pred             EeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCCCCcEE
Q 015198          356 HIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEML  396 (411)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~~~~  396 (411)
                      .-+.+.+..+.|.=- ..|...|.||.|+.|+..-.+.-.|+
T Consensus       285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~  326 (361)
T KOG2445|consen  285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCT  326 (361)
T ss_pred             cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheee
Confidence            333356777888655 55666777999999987765444555

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=2.9e-16  Score=131.34  Aligned_cols=243  Identities=16%  Similarity=0.149  Sum_probs=178.3

Q ss_pred             ccCCCCCCeEEEEEcCCCC-EEEEEeC--------CcEEEEecCCCcce-----E--EeecC-CCCEEEEEEeccCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYG-CFAAGTS--------CGFRIYNCEPFKET-----F--RRDLK-SGGFRIVEMLFRCNILA  101 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~-~la~g~d--------g~i~iw~~~~~~~~-----~--~~~~~-~~~~~~~~~~~~~~~~~  101 (411)
                      .+..|.+.|+.++-+|-.+ .|+++..        ..+.||.+......     +  ...+. .+...+.++.|.|+...
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            3456889999999999755 5555442        24689998632211     0  01121 23346788899999888


Q ss_pred             EEecCCCCCCCCCeEEEEECCCCcE-EEEEe------ecCceeEEEEcC--CeEEEE--EcCeEEEEEcCCceeeEEEe-
Q 015198          102 LVGAGDNSQYPPTKVIIWDDHQSRC-IGEFA------FRSDVRSVKLSR--DRIVVV--LEHKIYVYSFVDLKLLHQIE-  169 (411)
Q Consensus       102 l~s~~~d~~~~d~~i~vwd~~~~~~-~~~~~------~~~~i~~~~~~~--~~~~~~--~dg~i~iwd~~~~~~~~~~~-  169 (411)
                      +++-.+      ..|.+|++..+.. +..+.      +....++-+|+|  ++..++  .|+++..||+++.+....++ 
T Consensus       138 lasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d  211 (370)
T KOG1007|consen  138 LASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED  211 (370)
T ss_pred             eEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence            887654      8999999988765 44443      355677788988  666666  89999999999988777774 


Q ss_pred             ccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEEC
Q 015198          170 TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNT  246 (411)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~  246 (411)
                      .|..  .+..+.++|+.++++++++.||.|+||+.+.  .+++.+.+|...|+++.|+|.. ++|++++.|.. |.+|..
T Consensus       212 AHgq--~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca  288 (370)
T KOG1007|consen  212 AHGQ--RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCA  288 (370)
T ss_pred             hhcc--eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEec
Confidence            3444  5677778888777777888999999999765  5788899999999999999865 57889999999 999864


Q ss_pred             CCC-----------------------------ceEEEEeCCCCCcceEEEEeCCCCCE-EEEEeCCCcEEEEEccc
Q 015198          247 VDG-----------------------------TRLQEVRRGVDRAEIYSIALSPNVQW-LAVASDKGTVHIFSLRV  292 (411)
Q Consensus       247 ~~~-----------------------------~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s~dg~I~vwd~~~  292 (411)
                      ..-                             ..+.++..  |+..|++++||.-..+ +|+-+.||.+.|=++..
T Consensus       289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            320                             12234444  7889999999975554 67889999998866654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=8.5e-15  Score=134.98  Aligned_cols=221  Identities=11%  Similarity=0.103  Sum_probs=141.2

Q ss_pred             CCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccCCeEEEEe-cCCCCCCCCCeEEEEECC-CCcE--EEEEeecCceeE
Q 015198           64 SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVG-AGDNSQYPPTKVIIWDDH-QSRC--IGEFAFRSDVRS  138 (411)
Q Consensus        64 dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~~~d~~i~vwd~~-~~~~--~~~~~~~~~i~~  138 (411)
                      ++.|.+|++.+... .....+ ........+.++|++..+.. +..+     +.|.+|++. +++.  +...........
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeeecCCCCceE
Confidence            99999999964322 222223 22234556678888765543 3334     899999986 3432  233334456778


Q ss_pred             EEEcCCeEEEE----EcCeEEEEEcCC-ce---eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cce
Q 015198          139 VKLSRDRIVVV----LEHKIYVYSFVD-LK---LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMI  209 (411)
Q Consensus       139 ~~~~~~~~~~~----~dg~i~iwd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~  209 (411)
                      +.++|++++++    .++.|.+|++.+ +.   .+..+....   ....+.+++++++++++...++.|.+|+.+. ..+
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~---~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l  161 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE---GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL  161 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC---cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence            99999998776    479999999964 32   222222222   2233445667777777777889999988754 222


Q ss_pred             E-----EEe-ccccceeEEEecCCCCEEEEEcC-CCeEEEEEECCC--Cc--eEEEEeCC----CCCcceEEEEeCCCCC
Q 015198          210 K-----LIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVD--GT--RLQEVRRG----VDRAEIYSIALSPNVQ  274 (411)
Q Consensus       210 ~-----~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~--~~--~~~~~~~~----~~~~~v~~l~~spdg~  274 (411)
                      .     ... ........++|+|+|++|++++. ++. |.+||+..  ++  .+..+...    .+......+.++|+|+
T Consensus       162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~  240 (330)
T PRK11028        162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR  240 (330)
T ss_pred             cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence            1     111 12334578999999999988876 777 99999973  33  23333321    0111234688999999


Q ss_pred             EEEEEeC-CCcEEEEEccccc
Q 015198          275 WLAVASD-KGTVHIFSLRVRV  294 (411)
Q Consensus       275 ~l~s~s~-dg~I~vwd~~~~~  294 (411)
                      +|+++.. ++.|.+|+++...
T Consensus       241 ~lyv~~~~~~~I~v~~i~~~~  261 (330)
T PRK11028        241 HLYACDRTASLISVFSVSEDG  261 (330)
T ss_pred             EEEEecCCCCeEEEEEEeCCC
Confidence            9998854 6889999997643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=2.7e-16  Score=141.83  Aligned_cols=264  Identities=13%  Similarity=0.129  Sum_probs=181.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEe-c------cCCeEEEEecCCCCCCCC
Q 015198           41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEML-F------RCNILALVGAGDNSQYPP  113 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~l~s~~~d~~~~d  113 (411)
                      ..|...|.|+.|+.....+.+++|..+.+|+--.........+... .-...+. +      ......++-++.|     
T Consensus        11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~d-f~pt~~h~~~rs~~~g~~~d~~~i~s~D-----   84 (737)
T KOG1524|consen   11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDD-FVPTDMHLGGRSSGGGKGSDTLLICSND-----   84 (737)
T ss_pred             cccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcc-cCCccccccccccCCCCCcceEEEEcCC-----
Confidence            3577788899999999888888877776665432222111111011 0011111 1      1112334444444     


Q ss_pred             CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      |.+.+.+ +.++....+. |.+.+.+-.|+|||.-++   .||.|++|. ++|-+..++.....++.+.++.++.+  -+
T Consensus        85 Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~--~v  160 (737)
T KOG1524|consen   85 GRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSN--SI  160 (737)
T ss_pred             ceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCC--ce
Confidence            9999988 6777766676 999999999999998777   799999999 56655555555555555556655544  34


Q ss_pred             EEecCCCCeEEEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198          190 ACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (411)
                      +++  ..+.+.|-.. ....+...++|.+-|.++.|++...++++|++|-. .+|||- .|..+..-..  |+-+|++++
T Consensus       161 l~c--~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~-~G~~Lf~S~~--~ey~ITSva  234 (737)
T KOG1524|consen  161 VFC--QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDA-QGANLFTSAA--EEYAITSVA  234 (737)
T ss_pred             EEe--cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecc-cCcccccCCh--hccceeeee
Confidence            443  3567888433 34556678999999999999999999999999999 999995 6777766555  777999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccc
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS  348 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (411)
                      |.|| ..++.++.. +++   ++.+.                                                      
T Consensus       235 ~npd-~~~~v~S~n-t~R---~~~p~------------------------------------------------------  255 (737)
T KOG1524|consen  235 FNPE-KDYLLWSYN-TAR---FSSPR------------------------------------------------------  255 (737)
T ss_pred             eccc-cceeeeeee-eee---ecCCC------------------------------------------------------
Confidence            9999 666666543 344   22221                                                      


Q ss_pred             ccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          349 EWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                .+.++.++|+++ .++.++++.|.+.+--.-+
T Consensus       256 ----------~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie  287 (737)
T KOG1524|consen  256 ----------VGSIFNLSWSADGTQATCGTSTGQLIVAYAIE  287 (737)
T ss_pred             ----------ccceEEEEEcCCCceeeccccCceEEEeeeeh
Confidence                      146778999999 8899999999887754443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=5.5e-15  Score=136.24  Aligned_cols=240  Identities=12%  Similarity=0.070  Sum_probs=155.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcce-EEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           43 DEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKET-FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      +.+....++++|++++|+++.  ++.|.+|+++..... ..... ........+.+++++..++++..    .++.|.+|
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~----~~~~v~v~  107 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASY----NANCVSVS  107 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEc----CCCeEEEE
Confidence            345677899999999998776  899999999732222 22211 11223456888888876665543    13999999


Q ss_pred             ECCC-C---cEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeE-----EEeccCCCcceEEEccCCCc
Q 015198          120 DDHQ-S---RCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH-----QIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       120 d~~~-~---~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  186 (411)
                      ++.+ +   +.+..+........++++|++++++    .++.|.+||+.+...+.     ...... ......+.+++++
T Consensus       108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg  186 (330)
T PRK11028        108 PLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ  186 (330)
T ss_pred             EECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCC
Confidence            9864 3   2233333444567788999987775    57999999997633221     111111 1123345666777


Q ss_pred             eEEEEecCCCCeEEEEEcCC-----cceEEEecc------ccceeEEEecCCCCEEEEEcC-CCeEEEEEECCCCc----
Q 015198          187 SVLACPGLQRGQVRIEHFGL-----NMIKLINAH------DSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGT----  250 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~-----~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~----  250 (411)
                      ++++++...++.|.+|+.+.     +.+..+..+      ......+.++|+|++|+++.. ++. |.+|++....    
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~~~  265 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSVLS  265 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCeEE
Confidence            78776655689999987752     122233221      112336889999999998865 566 9999986543    


Q ss_pred             eEEEEeCCCCCcceEEEEeCCCCCEEEEEeC-CCcEEEEEccc
Q 015198          251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASD-KGTVHIFSLRV  292 (411)
Q Consensus       251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~~  292 (411)
                      .+..+..+   .....+.|+|||++|+++.. +++|.+|+++.
T Consensus       266 ~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        266 FEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            22222221   24567899999999998775 88999999864

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=9.2e-16  Score=140.08  Aligned_cols=240  Identities=16%  Similarity=0.161  Sum_probs=175.5

Q ss_pred             eecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEE
Q 015198           81 RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYV  156 (411)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~i  156 (411)
                      ..+.+|...+.++...+.+..+++|++|     |+|+||.+.+|.|++.+...+.|.+++|+|.....+    .+..+.|
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdD-----GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDD-----GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI  468 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCC-----CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence            3346888889999999999999999998     999999999999999999999999999999764322    3444544


Q ss_pred             EEcCCce---------ee----------------------------EEEeccCCCcceEEEccCCCceEEEEecCCC--C
Q 015198          157 YSFVDLK---------LL----------------------------HQIETLANLRGLCCLSHHSSTSVLACPGLQR--G  197 (411)
Q Consensus       157 wd~~~~~---------~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d--g  197 (411)
                      .+..-|.         ++                            +..-.+..  .+..+.|+.+|.+|+++...+  .
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k--~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK--SIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC--ccceeeeecCCceEEEeccCCCcc
Confidence            4432110         00                            01111222  344567777888888765433  3


Q ss_pred             eEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEE
Q 015198          198 QVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL  276 (411)
Q Consensus       198 ~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l  276 (411)
                      .|.|...... ....|....+.|.++.|+|...+|++++.. . |+|||+...++++.+..  ....|..++.+|.|.-|
T Consensus       547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~-vRiYdL~kqelvKkL~t--g~kwiS~msihp~GDnl  622 (733)
T KOG0650|consen  547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-S-VRIYDLSKQELVKKLLT--GSKWISSMSIHPNGDNL  622 (733)
T ss_pred             eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-c-eEEEehhHHHHHHHHhc--CCeeeeeeeecCCCCeE
Confidence            4555444433 233455567889999999999999888865 4 99999988887777766  45589999999999999


Q ss_pred             EEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEE
Q 015198          277 AVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFH  356 (411)
Q Consensus       277 ~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (411)
                      +.++.|+.+..||++-..+.                                                       +.+++
T Consensus       623 i~gs~d~k~~WfDldlsskP-------------------------------------------------------yk~lr  647 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSSKP-------------------------------------------------------YKTLR  647 (733)
T ss_pred             EEecCCCeeEEEEcccCcch-------------------------------------------------------hHHhh
Confidence            99999999999999877543                                                       12344


Q ss_pred             eCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198          357 IPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (411)
Q Consensus       357 ~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~  386 (411)
                      ++...+..++|++. +.+.+++.||.++||-
T Consensus       648 ~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  648 LHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             hhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            44445556789888 6666666779999974

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.70  E-value=8e-16  Score=130.96  Aligned_cols=238  Identities=16%  Similarity=0.243  Sum_probs=171.6

Q ss_pred             CCCCCCeEEEEEcCC----CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCC
Q 015198           41 DVDEIELISVSWNQD----YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPT  114 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~----g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~  114 (411)
                      +.|++..+.++|+-|    ..+||+|+ -|.|+|.|+...+.  ...+.+|...|.++.+.|.. .++++++.|     .
T Consensus        86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~--~~~~~ghG~sINeik~~p~~~qlvls~SkD-----~  158 (385)
T KOG1034|consen   86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC--SKNYRGHGGSINEIKFHPDRPQLVLSASKD-----H  158 (385)
T ss_pred             CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh--ccceeccCccchhhhcCCCCCcEEEEecCC-----c
Confidence            358888999999865    34788888 99999999986443  33345888999999999864 678888888     9


Q ss_pred             eEEEEECCCCcEEEEEe----ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEe------------------
Q 015198          115 KVIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE------------------  169 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~------------------  169 (411)
                      .|++|++.+..++..+.    |...|.++.|+.++..++   .|.++++|++...+....++                  
T Consensus       159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~  238 (385)
T KOG1034|consen  159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK  238 (385)
T ss_pred             eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence            99999999999999986    899999999999999998   79999999997432211111                  


Q ss_pred             ----------ccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC---------------cceEEEeccccceeEE--
Q 015198          170 ----------TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---------------NMIKLINAHDSHIACF--  222 (411)
Q Consensus       170 ----------~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~---------------~~~~~~~~~~~~i~~l--  222 (411)
                                .|.+.  +-|+.|-+  .++++ -+-++.|..|....               ..+..+.-....|+-+  
T Consensus       239 ~~fp~fst~diHrny--VDCvrw~g--d~ilS-kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf  313 (385)
T KOG1034|consen  239 THFPDFSTTDIHRNY--VDCVRWFG--DFILS-KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF  313 (385)
T ss_pred             cccccccccccccch--HHHHHHHh--hheee-cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence                      01111  11112222  34443 34566777787621               1122333344455555  


Q ss_pred             EecCCCCEEEEEcCCCeEEEEEECCCCceE--EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          223 TLTLDGLLLATASTRGTLIRIFNTVDGTRL--QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       223 ~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~--~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      +|+|-++.||.|...|. |.+||++..+..  .++........|...+|+.||.+|+..++|++|.-||.-
T Consensus       314 ~~d~~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  314 AFDPWQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eecHHHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            45677889999999999 999999877652  233322234589999999999999999999999988864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=2.3e-16  Score=143.13  Aligned_cols=255  Identities=12%  Similarity=0.155  Sum_probs=180.6

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCC------CcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP------FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      .+..|.+.|..++|+|....|++++ ||.+++|++..      ........|.+|...|.++....++..+.+|+.|   
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D---  365 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID---  365 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC---
Confidence            4567899999999999999999999 99999999932      1122234456899999999999999999999998   


Q ss_pred             CCCeEEEEECCCC------c----EEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcce
Q 015198          112 PPTKVIIWDDHQS------R----CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGL  177 (411)
Q Consensus       112 ~d~~i~vwd~~~~------~----~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~  177 (411)
                        |+|+.|++...      .    ....+. |...++.+++++....++   .||+++.|+...... ..+.........
T Consensus       366 --g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P  442 (577)
T KOG0642|consen  366 --GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP  442 (577)
T ss_pred             --ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence              99999964321      1    122233 889999999998766555   699999999865444 333322221222


Q ss_pred             EEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEec-------cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC
Q 015198          178 CCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (411)
                      ..+.+......+.++...-+.-.+++... ..+..+..       ....+..+..+|.+.+.+++..|+. |+++|..++
T Consensus       443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~~~  521 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNKTG  521 (577)
T ss_pred             ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eeccccccc
Confidence            23332221111111111222222222211 12222211       1235677888999999999999999 999999999


Q ss_pred             ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198          250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (411)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~  302 (411)
                      +.+.....  |...++++++.|+|-+|++++.|+.+++|++..+.+..+...|
T Consensus       522 ~~l~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  522 KILHSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             ccchheee--ccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            99998888  8889999999999999999999999999999888876544433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=4e-15  Score=127.40  Aligned_cols=190  Identities=12%  Similarity=0.120  Sum_probs=136.5

Q ss_pred             CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC--CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--
Q 015198           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--  131 (411)
Q Consensus        57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--  131 (411)
                      ..+|++. .|.|++||..+++.+..  +..++..+..+.|..  ....+.+++.|     |+|++||++.......+.  
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~--fk~~~~~~N~vrf~~~ds~h~v~s~ssD-----G~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEE--FKGPPATTNGVRFISCDSPHGVISCSSD-----GTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhe--ecCCCCcccceEEecCCCCCeeEEeccC-----CeEEEEEeecchhhhheecc
Confidence            4677777 99999999998554433  335555554555544  45667777777     999999998877666555  


Q ss_pred             -ec-CceeEEEEcCCeEEEE-------EcCeEEEEEcCCcee-eEEE-eccCCCcceEEEccCCCceEEEEecCCCCeEE
Q 015198          132 -FR-SDVRSVKLSRDRIVVV-------LEHKIYVYSFVDLKL-LHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQVR  200 (411)
Q Consensus       132 -~~-~~i~~~~~~~~~~~~~-------~dg~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~  200 (411)
                       +. .+..+++.+-.+.+++       .+-.|.+||++..+. +..+ ..|...++.+.|.|+..+  ++.+|+.||.|.
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn--lLlSGSvDGLvn  191 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN--LLLSGSVDGLVN  191 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC--eEEeecccceEE
Confidence             22 4677777775666665       478899999987665 5554 667777777777776543  444799999999


Q ss_pred             EEEcCCc----ceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198          201 IEHFGLN----MIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       201 i~~~~~~----~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (411)
                      |++....    .+...-.|...|.++.|..++ +.|.+-+..+. ..+|+++.+.....+.
T Consensus       192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLE  251 (376)
T ss_pred             eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhccc
Confidence            9877653    233334577889999999887 45777888888 9999999887654444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=1.2e-16  Score=141.61  Aligned_cols=226  Identities=15%  Similarity=0.139  Sum_probs=182.0

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 015198           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS  124 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~  124 (411)
                      .-+.+.++.+|++|+.|+ .|.+..+|+.+....+...+   ...+.++.|-.+..+++.+..      ..+.||| ..|
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---~Etv~Dv~~LHneq~~AVAQK------~y~yvYD-~~G  200 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---METVRDVTFLHNEQFFAVAQK------KYVYVYD-NNG  200 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh---hhhhhhhhhhcchHHHHhhhh------ceEEEec-CCC
Confidence            347899999999999999 99999999998665555433   344666777777777777765      8999999 888


Q ss_pred             cEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE
Q 015198          125 RCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI  201 (411)
Q Consensus       125 ~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i  201 (411)
                      ..++.++....|..+.|-|...+++   ..|.++.-|+.+|+.+..+........+  +..+|-+.. +..|..+|+|.+
T Consensus       201 tElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~v--m~qNP~NaV-ih~GhsnGtVSl  277 (545)
T KOG1272|consen  201 TELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDV--MKQNPYNAV-IHLGHSNGTVSL  277 (545)
T ss_pred             cEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccch--hhcCCccce-EEEcCCCceEEe
Confidence            8888888888899999999998888   6799999999999999998877764444  444554444 456889999999


Q ss_pred             EEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEe
Q 015198          202 EHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS  280 (411)
Q Consensus       202 ~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  280 (411)
                      |..+. .++..+..|.++|.+|++.++|+|++|++.|.. ++|||++....+.++..   ..+...++||..| +||.+ 
T Consensus       278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lLA~~-  351 (545)
T KOG1272|consen  278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LLALS-  351 (545)
T ss_pred             cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc-ceeee-
Confidence            98775 567778899999999999999999999999999 99999999887777764   2357788898765 34444 


Q ss_pred             CCCcEEEEEc
Q 015198          281 DKGTVHIFSL  290 (411)
Q Consensus       281 ~dg~I~vwd~  290 (411)
                      ....|.||.=
T Consensus       352 ~G~~v~iw~d  361 (545)
T KOG1272|consen  352 YGDHVQIWKD  361 (545)
T ss_pred             cCCeeeeehh
Confidence            4446999953

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=3.6e-14  Score=135.43  Aligned_cols=293  Identities=14%  Similarity=0.151  Sum_probs=197.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCC--CcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP--FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ..|.-.+++.+++|+++++|+|. ||.|.+|.--.  ....-...+|=|...+.++.|+.+|.++.+|+.+     +.+.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E-----~VLv  276 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE-----GVLV  276 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc-----eEEE
Confidence            45677799999999999999999 99999996432  2222223355688889999999999999999998     9999


Q ss_pred             EEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCC-----------CcceEEEccC
Q 015198          118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN-----------LRGLCCLSHH  183 (411)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~  183 (411)
                      +|.+.+++...--+..++|..+.++||+.+.+   .|+.|.+....+......+.+...           -...+++.+ 
T Consensus       277 ~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-  355 (792)
T KOG1963|consen  277 LWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-  355 (792)
T ss_pred             EEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-
Confidence            99999998322223789999999999998776   899999998866655544433211           123344444 


Q ss_pred             CCceEEEEecCCCCeEEEEEcCC-cceEEEe-----------ccccceeEEEecCCCCEEEEEcC--------CCe-EEE
Q 015198          184 SSTSVLACPGLQRGQVRIEHFGL-NMIKLIN-----------AHDSHIACFTLTLDGLLLATAST--------RGT-LIR  242 (411)
Q Consensus       184 ~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~-----------~~~~~i~~l~~sp~g~~l~s~s~--------dg~-~I~  242 (411)
                       ....++..| ..|.|.+++... ..+..+.           .+.-.+++++.+-.|.+++|.-.        ||. .++
T Consensus       356 -r~~~~vln~-~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK  433 (792)
T KOG1963|consen  356 -RTNSLVLNG-HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK  433 (792)
T ss_pred             -CCCceeecC-CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence             333455534 789999966433 3333331           12345778888888999988642        221 378


Q ss_pred             EEECCCCc----eEEEEeCCCCCcceEEEEe-CCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCC
Q 015198          243 IFNTVDGT----RLQEVRRGVDRAEIYSIAL-SPNVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHS  316 (411)
Q Consensus       243 vwd~~~~~----~~~~~~~~~~~~~v~~l~~-spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (411)
                      +|-.....    +...+... |...+...++ ++... ..++++.||.++||-+..-+......                
T Consensus       434 FW~~n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~----------------  496 (792)
T KOG1963|consen  434 FWQYNPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS----------------  496 (792)
T ss_pred             EEEEcCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc----------------
Confidence            89654432    33333333 5544444444 44333 78999999999999996655432100                


Q ss_pred             CCCccccCCCCCCCCCCcccccccccCcccccccceEEEE-eCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          317 SSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFH-IPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                                                     +.|...-+. ...-....++|+.++.+++++.|+.+.+|..+.
T Consensus       497 -------------------------------s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  497 -------------------------------SNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             -------------------------------cceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence                                           011100000 011234568899999999999999999999887

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.68  E-value=3.6e-14  Score=124.16  Aligned_cols=285  Identities=16%  Similarity=0.182  Sum_probs=187.2

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEe-CCcEEEEecCCC-------cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           43 DEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPF-------KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        43 h~~~V~~l~~s~~g~-~la~g~-dg~i~iw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      ...+|.++.|.++.. .||+|+ |..|+||.++..       ...+...+..|...+..+.|++++.++++|+++     
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~-----   86 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG-----   86 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC-----
Confidence            356899999999876 999999 999999988632       223344466888899999999999999999998     


Q ss_pred             CeEEEEECC--------C--------CcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCC
Q 015198          114 TKVIIWDDH--------Q--------SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN  173 (411)
Q Consensus       114 ~~i~vwd~~--------~--------~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~  173 (411)
                      |.|.+|-..        +        ......+. |...|..++|+|++.+++   .|+.+++||+..|+....+..|.+
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~  166 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH  166 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence            999999855        2        11122233 789999999999999998   799999999999999999998888


Q ss_pred             CcceEEEccCCCceEEEEecCCCCeEEEEEcC----CcceE--EE--------------ecc----ccceeEEEecCCCC
Q 015198          174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG----LNMIK--LI--------------NAH----DSHIACFTLTLDGL  229 (411)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~----~~~~~--~~--------------~~~----~~~i~~l~~sp~g~  229 (411)
                      .+..  ++++|-+++++.-+ .|...+.....    ...+.  .+              .-|    ..-...++|+|+|.
T Consensus       167 yvqg--vawDpl~qyv~s~s-~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~  243 (434)
T KOG1009|consen  167 YVQG--VAWDPLNQYVASKS-SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS  243 (434)
T ss_pred             ccce--eecchhhhhhhhhc-cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence            5544  45555556666533 44433322111    11111  00              011    12245678999999


Q ss_pred             EEEEEcC----CCe----EEEEEECCCC-ceEEEEeCCCCCcceEEEEeCC------------------CCCEEEEEeCC
Q 015198          230 LLATAST----RGT----LIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSP------------------NVQWLAVASDK  282 (411)
Q Consensus       230 ~l~s~s~----dg~----~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp------------------dg~~l~s~s~d  282 (411)
                      +|++.+.    .+.    ..++|+-... ++...+..  ...+...+.|+|                  -+-.+|.++.+
T Consensus       244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~  321 (434)
T KOG1009|consen  244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN  321 (434)
T ss_pred             EEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc
Confidence            9987542    122    1345543321 22333332  223344444443                  23345556554


Q ss_pred             CcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCce
Q 015198          283 GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTH  362 (411)
Q Consensus       283 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (411)
                       .|+|||.++..+.-                                 ..                      -.++-...
T Consensus       322 -svyvydtq~~~P~~---------------------------------~v----------------------~nihy~~i  345 (434)
T KOG1009|consen  322 -SVYVYDTQTLEPLA---------------------------------VV----------------------DNIHYSAI  345 (434)
T ss_pred             -eEEEeccccccceE---------------------------------EE----------------------eeeeeeee
Confidence             59999988866431                                 00                      11222345


Q ss_pred             EEEEEccC-CEEEEEEeCCcEEEEEEecCCCC
Q 015198          363 FIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGG  393 (411)
Q Consensus       363 ~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~  393 (411)
                      ...+|+.+ ..|++.+.||..-.-.+++.+.|
T Consensus       346 TDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  346 TDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             cceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            56899998 67777777999888888887766

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=7.6e-15  Score=123.09  Aligned_cols=237  Identities=14%  Similarity=0.142  Sum_probs=166.0

Q ss_pred             CCCCCCeEEEEEcCCCC-----EEEEEeCCcEEEEecCCCcceEE--eec-----CCCCEEEEEEeccC-CeEEEEecCC
Q 015198           41 DVDEIELISVSWNQDYG-----CFAAGTSCGFRIYNCEPFKETFR--RDL-----KSGGFRIVEMLFRC-NILALVGAGD  107 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~-----~la~g~dg~i~iw~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~-~~~~l~s~~~  107 (411)
                      -.|.-+++.+.|.|+.+     +||+ ++..+|||.+...+....  ..+     ......++++.|+. +-.++.+++-
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            47889999999999863     3444 456789999874221111  111     23455677788875 5567777777


Q ss_pred             CCCCCCCeEEEEECCCCcE----EEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCC-CcceE
Q 015198          108 NSQYPPTKVIIWDDHQSRC----IGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLAN-LRGLC  178 (411)
Q Consensus       108 d~~~~d~~i~vwd~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~  178 (411)
                      |     -+..|||++++..    .+.+.|..+|..++|..++.-++    .||.|++||++..+.-..+..... ....+
T Consensus       172 D-----TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl  246 (364)
T KOG0290|consen  172 D-----TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL  246 (364)
T ss_pred             c-----CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence            7     9999999999733    23345999999999999766555    799999999998766555544333 34566


Q ss_pred             EEccCCCc-eEEEEecCCCCeEEEEEcC--CcceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCc----
Q 015198          179 CLSHHSST-SVLACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGT----  250 (411)
Q Consensus       179 ~~~~~~~~-~~l~~~g~~dg~i~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~----  250 (411)
                      .++++.+. .++|.-+-....|.|-+.+  ..++..+.+|.+.|+.|+|.|.. ..|++++.|.. +.+||+...-    
T Consensus       247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~~  325 (364)
T KOG0290|consen  247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPRENG  325 (364)
T ss_pred             eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccCC
Confidence            77776543 3455444445566664433  46788899999999999999965 58999999999 9999996532    


Q ss_pred             --eEEEEeCCCCCcceEEEEeCC-CCCEEEEEeCCCcEEEE
Q 015198          251 --RLQEVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIF  288 (411)
Q Consensus       251 --~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~I~vw  288 (411)
                        ++..+.   ..+.|+.+.|++ .+.+|+.+... ++.+.
T Consensus       326 ~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~k-kleiL  362 (364)
T KOG0290|consen  326 EDPILAYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEIL  362 (364)
T ss_pred             CCchhhhh---ccceeeeeeecccCCCEEEEEecC-eeeEE
Confidence              122222   345899999995 56788777654 35443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.68  E-value=2.3e-16  Score=148.96  Aligned_cols=293  Identities=12%  Similarity=0.141  Sum_probs=203.6

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..+.+|...|+|+.|...|.++++|+ |..++||.+++......  +.+|...+..++.+.+...+++++.|     ..|
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs--~rGhs~ditdlavs~~n~~iaaaS~D-----~vI  256 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS--CRGHSGDITDLAVSSNNTMIAAASND-----KVI  256 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc--CCCCccccchhccchhhhhhhhcccC-----ceE
Confidence            45679999999999999999999999 99999999987555444  45899999999999999999999988     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEecc---CCCcceEEEccCCCceEEEE
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETL---ANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~  191 (411)
                      ++|.+..+.++..+. |.+.|++++|+|-.  .. .||++++||.+ ...+......   .....++.+-+...+.-++ 
T Consensus       257 rvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-  332 (1113)
T KOG0644|consen  257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFL-  332 (1113)
T ss_pred             EEEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccc-
Confidence            999999999999887 99999999999965  22 79999999986 1111110000   0111222333322222232 


Q ss_pred             ecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198          192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (411)
                      +|+.|+.-..|.....     ..+...+.-+.++.+- .+.+++-.+-. +++|++.+|.+++.+.+  |...+..+.++
T Consensus       333 Tgs~d~ea~n~e~~~l-----~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvLd~H  404 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQL-----AWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVLDVH  404 (1113)
T ss_pred             cccCCcccccchhhHh-----hhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeeeeec
Confidence            4566666555433211     1112122222222222 34555666677 99999999999888888  77788889999


Q ss_pred             CCCCE-EEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccc
Q 015198          271 PNVQW-LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSE  349 (411)
Q Consensus       271 pdg~~-l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (411)
                      |-... ..+++.||...|||+-.|.+.+                                                    
T Consensus       405 pfn~ri~msag~dgst~iwdi~eg~pik----------------------------------------------------  432 (1113)
T KOG0644|consen  405 PFNPRIAMSAGYDGSTIIWDIWEGIPIK----------------------------------------------------  432 (1113)
T ss_pred             CCCcHhhhhccCCCceEeeecccCCcce----------------------------------------------------
Confidence            96654 4589999999999999987653                                                    


Q ss_pred             cceEEEEeCCCceEEEEEccCCEEEEEEeC-CcEEEEEEecCCCCcEEEeeeeeccccC
Q 015198          350 WSFAQFHIPEVTHFIAAFGSQNTVVIVSMD-GSFYRCSFDPVHGGEMLQQEYVRFLKTV  407 (411)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (411)
                          ....+..-...+.|+++++-++.+.| |.+||.....  +......+|.+|.-.+
T Consensus       433 ----~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gq--s~s~k~ak~dqffl~d  485 (1113)
T KOG0644|consen  433 ----HYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQ--SKSQKKAKYDQFFLGD  485 (1113)
T ss_pred             ----eeecccceeeccccCCCCceEecCCCCCceEEeccCC--CccccccccceEeecC
Confidence                11122344566889999766666665 9888887776  4345556666665443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.6e-14  Score=131.56  Aligned_cols=294  Identities=12%  Similarity=0.111  Sum_probs=196.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEE-EEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           41 DVDEIELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la-~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      -++...-+.|..+|||+|+. +|. .-.|++||+......+...+....+.+.-  .+.|...++--..|     ..|.+
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~fei--LsDD~SK~v~L~~D-----R~Ief  120 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEI--LSDDYSKSVFLQND-----RTIEF  120 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEE--eccchhhheEeecC-----ceeee
Confidence            46778889999999999876 555 99999999998777777765333332222  22233222222222     55555


Q ss_pred             EECCCCcEEEEEeecCceeEEEEcC--CeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198          119 WDDHQSRCIGEFAFRSDVRSVKLSR--DRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (411)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (411)
                      .. .-| ....+..+..-.+++++.  ...+++ ....|+-++++.|..+..+......++++.+..-.  .+|+ +|..
T Consensus       121 Ha-k~G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h--gLla-~Gt~  195 (703)
T KOG2321|consen  121 HA-KYG-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH--GLLA-CGTE  195 (703)
T ss_pred             hh-hcC-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCcc--ceEE-eccc
Confidence            43 112 222233333344555543  223333 77889999999999999998877767777666543  4555 5888


Q ss_pred             CCeEEEEEcCCcc-eEEE------ecccc-----ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc
Q 015198          196 RGQVRIEHFGLNM-IKLI------NAHDS-----HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE  263 (411)
Q Consensus       196 dg~i~i~~~~~~~-~~~~------~~~~~-----~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~  263 (411)
                      +|.|..|+...+. +..+      ..|.+     .|+++.|+.+|-.+++|..+|. |.|||+++.+++.. ..+...-+
T Consensus       196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~-kdh~~e~p  273 (703)
T KOG2321|consen  196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLV-KDHGYELP  273 (703)
T ss_pred             CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceee-cccCCccc
Confidence            9999999877533 2222      22333     3999999999999999999999 99999999988743 34335568


Q ss_pred             eEEEEeCCCC--CEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccc
Q 015198          264 IYSIALSPNV--QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGV  341 (411)
Q Consensus       264 v~~l~~spdg--~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (411)
                      |..+.|.+.+  ..|++ .....++|||-.+|+..-                                            
T Consensus       274 i~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~a--------------------------------------------  308 (703)
T KOG2321|consen  274 IKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMA--------------------------------------------  308 (703)
T ss_pred             eeeecccccCCCceEEe-cchHHhhhcccccCCcee--------------------------------------------
Confidence            9999998753  34443 345579999999998541                                            


Q ss_pred             cCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEecCCCCcEEEeeeeeccccCCC
Q 015198          342 LPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSR  409 (411)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (411)
                                  .+....+...+|.+-..+.++++-.++.+..|.++..+  +-  .+|++|++...+
T Consensus       309 ------------siEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG--Pa--PrWCSfLdnlTE  360 (703)
T KOG2321|consen  309 ------------SIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG--PA--PRWCSFLDNLTE  360 (703)
T ss_pred             ------------eccccCCcCceeeecCCceEEEecCCCcceeEEccccC--CC--chhhhHHHhHHH
Confidence                        11111233445555445889999999999999888733  33  689999987654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=7.3e-14  Score=133.37  Aligned_cols=237  Identities=13%  Similarity=0.147  Sum_probs=169.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC---eEEEEecCCCCCCCCCeEEEEECC
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN---ILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      .-..-.|++|+++++...+..|.||...++..+-  .++.+...+..+.+.+.   ..++.+++.+     |.|++||..
T Consensus        18 ~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~--~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~-----G~I~vwd~~   90 (792)
T KOG1963|consen   18 NKSPAVFSNDAKFLFLCTGNFVKVYSTATGECIT--SLEDHTAPLTSVIVLPSSENANYLIVCSLD-----GTIRVWDWS   90 (792)
T ss_pred             eecccccccCCcEEEEeeCCEEEEEecchHhhhh--hcccccCccceeeecCCCccceEEEEEecC-----ccEEEecCC
Confidence            3345578999999999999999999999866544  35567666666665542   2566677777     999999998


Q ss_pred             CCcEEEEEeecCceeEE-----------------------------------------------------------EEcC
Q 015198          123 QSRCIGEFAFRSDVRSV-----------------------------------------------------------KLSR  143 (411)
Q Consensus       123 ~~~~~~~~~~~~~i~~~-----------------------------------------------------------~~~~  143 (411)
                      .+..++++....++..+                                                           .+++
T Consensus        91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~  170 (792)
T KOG1963|consen   91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN  170 (792)
T ss_pred             CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence            88887776532222222                                                           2222


Q ss_pred             CeEEEE--EcCeEEEEEcCCcee-eEEE---eccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-----cceEEE
Q 015198          144 DRIVVV--LEHKIYVYSFVDLKL-LHQI---ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-----NMIKLI  212 (411)
Q Consensus       144 ~~~~~~--~dg~i~iwd~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-----~~~~~~  212 (411)
                      .+.+..  .+..+++|....+.. ....   ..|...  ..+.+.++.+.++|+ |..||.|.+|..-+     .....+
T Consensus       171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~--~t~~~~spn~~~~Aa-~d~dGrI~vw~d~~~~~~~~t~t~l  247 (792)
T KOG1963|consen  171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN--ITCVALSPNERYLAA-GDSDGRILVWRDFGSSDDSETCTLL  247 (792)
T ss_pred             CceEEEEEEeeeEEEEEecccceeeccchhhhhhccc--ceeEEeccccceEEE-eccCCcEEEEeccccccccccceEE
Confidence            222222  456667777655331 1001   122332  344555566677765 77899999986544     345667


Q ss_pred             eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       213 ~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      .-|...|.+++|+++|.+|++|+..+. +.+|.+.+++ .+-+..  -.++|..+.++||+.+.+....|+.|.+-...+
T Consensus       248 HWH~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~-kqfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  248 HWHHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGK-KQFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             EecccccceeEEecCCceEeecccceE-EEEEeecCCC-cccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence            889999999999999999999999999 9999999988 334444  567999999999999999999999999998877


Q ss_pred             cccC
Q 015198          293 RVVG  296 (411)
Q Consensus       293 ~~~~  296 (411)
                      ....
T Consensus       324 l~~k  327 (792)
T KOG1963|consen  324 LEIK  327 (792)
T ss_pred             hhhh
Confidence            6644

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.67  E-value=2.9e-15  Score=132.77  Aligned_cols=242  Identities=11%  Similarity=0.074  Sum_probs=169.1

Q ss_pred             cCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           40 SDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...|..+|.++.|+|.. ..+++.+ ||+|++-|++.........+......+..+.|+.+...++.++.-     |.+.
T Consensus       230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~-----G~f~  304 (498)
T KOG4328|consen  230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV-----GNFN  304 (498)
T ss_pred             eccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecc-----cceE
Confidence            46799999999999974 4555555 999999999864433333333466777788888776666666655     8999


Q ss_pred             EEECCCCcE-EEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeE----EEeccCCCcceEEEccCCCce
Q 015198          118 IWDDHQSRC-IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH----QIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       118 vwd~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      +||++++.. ...+. |...|..++++|...++.    .|++++|||++......    ....|...+....|+|+.  .
T Consensus       305 ~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~--g  382 (498)
T KOG4328|consen  305 VIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG--G  382 (498)
T ss_pred             EEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC--C
Confidence            999888765 44444 888999999999876665    79999999997643222    223466656666666654  3


Q ss_pred             EEEEecCCCCeEEEEEcC----C-cceEEEeccc----c--ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198          188 VLACPGLQRGQVRIEHFG----L-NMIKLINAHD----S--HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~----~-~~~~~~~~~~----~--~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (411)
                      .|++++ .|..|+||+..    . .+...+. |.    .  ......|.|+..++++|..-.. |-|+|-..++.+..+.
T Consensus       383 tl~TT~-~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~-IDv~~~~~~q~v~el~  459 (498)
T KOG4328|consen  383 TLLTTC-QDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP-IDVFDGNGGQMVCELH  459 (498)
T ss_pred             ceEeec-cCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcc-eeEEcCCCCEEeeecc
Confidence            466654 89999998873    2 2222232 22    1  2334679999999999999999 9999988888788876


Q ss_pred             CCCCCcceEEEEeCCCCC-EEEEEeCCCcEEEEEcc
Q 015198          257 RGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLR  291 (411)
Q Consensus       257 ~~~~~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~  291 (411)
                      ......-..-..|+|-+. +++.++..|.|+||--+
T Consensus       460 ~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  460 DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             CccccccccceeecccccceeccCCccceEEEEecC
Confidence            642222223358999888 45555567788888644

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=9.9e-15  Score=138.59  Aligned_cols=261  Identities=13%  Similarity=0.085  Sum_probs=173.1

Q ss_pred             CcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcE--EEE-----EeecCce
Q 015198           65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRC--IGE-----FAFRSDV  136 (411)
Q Consensus        65 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~--~~~-----~~~~~~i  136 (411)
                      +.+.||++... ......+ .....+.++.|+| +..++++|..+     |.|.+||+..+..  ...     -.|..++
T Consensus       222 ~~~~vW~~~~p-~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~-----GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  222 GVLLVWSLKNP-NTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYN-----GQVVLWDLRKGSDTPPSGLSALEVSHSEPV  294 (555)
T ss_pred             ceEEEEecCCC-CCceEEE-ecCCceeEEEeccCCcceEEeeccC-----ceEEEEEccCCCCCCCcccccccccCCcCe
Confidence            46889999864 2233333 5567788888887 45677777777     9999999877654  222     2378899


Q ss_pred             eEEEEcCCeE---EEE--EcCeEEEEEcCCcee-eEEE----ecc-----CCCcceEEEccCCCceEEEEecCCCCeEEE
Q 015198          137 RSVKLSRDRI---VVV--LEHKIYVYSFVDLKL-LHQI----ETL-----ANLRGLCCLSHHSSTSVLACPGLQRGQVRI  201 (411)
Q Consensus       137 ~~~~~~~~~~---~~~--~dg~i~iwd~~~~~~-~~~~----~~~-----~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i  201 (411)
                      ..+.|..+..   ++.  .||.|..|+++.... ....    ..+     .......++.+.+......+.|+.+|.|.-
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~  374 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK  374 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence            9999875432   222  899999999854322 1111    110     122233444443333333335789999988


Q ss_pred             -EEcCC--cc------eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECC-CCceEEEEeCCCCCcceEEEEeCC
Q 015198          202 -EHFGL--NM------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       202 -~~~~~--~~------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l~~sp  271 (411)
                       .....  ..      ...+..|.++|+++.++|=+..++..+.|-. ++||... ...++..+..  +...|++++|||
T Consensus       375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSp  451 (555)
T KOG1587|consen  375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAWSP  451 (555)
T ss_pred             EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEEcC
Confidence             22222  22      3355678999999999998876555555888 9999876 5666666666  666799999999


Q ss_pred             CCC-EEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccccc
Q 015198          272 NVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW  350 (411)
Q Consensus       272 dg~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (411)
                      ... .++++..||.|.+||+......-                                                     
T Consensus       452 trpavF~~~d~~G~l~iWDLl~~~~~P-----------------------------------------------------  478 (555)
T KOG1587|consen  452 TRPAVFATVDGDGNLDIWDLLQDDEEP-----------------------------------------------------  478 (555)
T ss_pred             cCceEEEEEcCCCceehhhhhccccCC-----------------------------------------------------
Confidence            764 67788889999999998876442                                                     


Q ss_pred             ceEEEEeCCCceEEEEEccCCE-EEEEEeCCcEEEEEEec
Q 015198          351 SFAQFHIPEVTHFIAAFGSQNT-VVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dg~~~~~~~~~  389 (411)
                       .++.++.......+.|+++++ |++|...|.+++|.+.+
T Consensus       479 -v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  479 -VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             -cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence             123333333455677888654 55555579999999975

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.66  E-value=2.1e-15  Score=124.71  Aligned_cols=239  Identities=12%  Similarity=0.147  Sum_probs=171.2

Q ss_pred             CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE--EcCeEEEEEc
Q 015198           84 KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSF  159 (411)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~dg~i~iwd~  159 (411)
                      ..+...+.++.|..++.+ .++...     |.|++|++.+...+..++  +...|+.+..-|++.+..  .|..+.+|++
T Consensus        11 Rp~~~~v~s~~fqa~~rL-~sg~~~-----G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen   11 RPHSSSVTSVLFQANERL-MSGLSV-----GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI   84 (323)
T ss_pred             ccccchheehhhccchhh-hccccc-----ceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence            377788888889888874 455544     999999999988887777  678899999999877666  7888999987


Q ss_pred             CCceeeEE--E-----------------------eccC--------------------------CCcceEEEc--cCCCc
Q 015198          160 VDLKLLHQ--I-----------------------ETLA--------------------------NLRGLCCLS--HHSST  186 (411)
Q Consensus       160 ~~~~~~~~--~-----------------------~~~~--------------------------~~~~~~~~~--~~~~~  186 (411)
                      .-+..+..  +                       .-+.                          ..-.++++.  .....
T Consensus        85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s  164 (323)
T KOG0322|consen   85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS  164 (323)
T ss_pred             cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence            54211110  0                       0000                          000122222  12223


Q ss_pred             eEEEEecCCCCeEEEEEcCCc-----------ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC--ce--
Q 015198          187 SVLACPGLQRGQVRIEHFGLN-----------MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TR--  251 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~~-----------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~--  251 (411)
                      .+++.+|.++|.+.+|+.+.+           .......|..+|.++.|.+.-..=++|+.+.. +..|.++..  .+  
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSLNHSTGSLQI  243 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeeeccccCcccc
Confidence            456677999999999998873           33444678999999999876555677787877 889987543  22  


Q ss_pred             EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCC
Q 015198          252 LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP  331 (411)
Q Consensus       252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (411)
                      ..++..  ..-.|..+.+-||++.+|+++.|+.|+||..++.+..-                                  
T Consensus       244 ~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA----------------------------------  287 (323)
T KOG0322|consen  244 RKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA----------------------------------  287 (323)
T ss_pred             cceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh----------------------------------
Confidence            122222  23368889999999999999999999999999988653                                  


Q ss_pred             CCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEE
Q 015198          332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (411)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~  387 (411)
                                            -.+.+.+.+..++|+++ +.+++++.|+.+-.|++
T Consensus       288 ----------------------VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  288 ----------------------VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ----------------------hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                                  23333357788999999 88888999999999986

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=3.5e-14  Score=137.70  Aligned_cols=289  Identities=15%  Similarity=0.173  Sum_probs=187.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec-CCCCEEEEEEecc--CCeEEEEecCCCCCCCCCeEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFR--CNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      +...+-..+.|+|-...++++. ...|+|||.+..+..-.... ......+..+.+-  .+..++.+++.|     |.|+
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d-----GvIR 1136 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD-----GVIR 1136 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccC-----ceEE
Confidence            3444567789999999999999 78899999987554222211 0122344444443  355667777777     9999


Q ss_pred             EEEC-CC----CcEEEEEe-e-------cCceeEEEEcCC-eEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEc
Q 015198          118 IWDD-HQ----SRCIGEFA-F-------RSDVRSVKLSRD-RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS  181 (411)
Q Consensus       118 vwd~-~~----~~~~~~~~-~-------~~~i~~~~~~~~-~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  181 (411)
                      ||+- ..    .+.+.... .       .+.-.-+.|... |.+++  .-..|+|||....+.++.+..... ..+.+++
T Consensus      1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS 1215 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALS 1215 (1387)
T ss_pred             EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeec
Confidence            9982 22    22332222 0       011122345443 44444  346799999988777777754432 2455666


Q ss_pred             cCCCc-eEEEEecCCCCeEEEEEcCCc----ceEEEeccccc--eeEEEecCCCC-EEEEEcCCCeEEEEEECCCCceEE
Q 015198          182 HHSST-SVLACPGLQRGQVRIEHFGLN----MIKLINAHDSH--IACFTLTLDGL-LLATASTRGTLIRIFNTVDGTRLQ  253 (411)
Q Consensus       182 ~~~~~-~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~~~--i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~~~~  253 (411)
                      .+-.+ ..+ ++|..||.|++++.+..    .+...+.|...  |..+.+.+.|- .|++|+.+|. |++||++......
T Consensus      1216 ~~~~~gn~i-~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1216 ADLVHGNII-AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKET 1293 (1387)
T ss_pred             ccccCCceE-EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccc
Confidence            65443 455 45899999999887653    45666788877  99999998775 4999999999 9999998743222


Q ss_pred             --EEeCCCCCc-ceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCC
Q 015198          254 --EVRRGVDRA-EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGAN  330 (411)
Q Consensus       254 --~~~~~~~~~-~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (411)
                        ++..+...+ ..+++..+++...+|+|+. +.|+||++...+...                                 
T Consensus      1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~--------------------------------- 1339 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI--------------------------------- 1339 (1387)
T ss_pred             cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc---------------------------------
Confidence              222211113 5899999999999999998 889999998665331                                 


Q ss_pred             CCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          331 PGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                      ..    +.++++.    +         ..+...+++|+|. -.+++|..|..|-||..+.
T Consensus      1340 ~k----~n~~F~~----q---------~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1340 IK----YNPGFMG----Q---------RIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             cc----cCccccc----C---------cCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence            00    1111111    0         1134578899998 5566666689999998775

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=2.6e-15  Score=132.00  Aligned_cols=196  Identities=20%  Similarity=0.257  Sum_probs=147.2

Q ss_pred             EEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeE
Q 015198           91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLH  166 (411)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~  166 (411)
                      ..++|..++..+++++.|     |++|||+..+...+.... |...|.++.|+||+++++   .| ..+||+.+++..+.
T Consensus       148 k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTD-----GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCCCCEeeecccc-----ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence            567788999999999998     999999977766655554 999999999999999998   45 99999999997666


Q ss_pred             EEeccCCC--cceEEEccCCC--ceEEEEecCCCCeEEE-----EEcCCcc--eEEEeccccceeEEEecCCCCEEEEEc
Q 015198          167 QIETLANL--RGLCCLSHHSS--TSVLACPGLQRGQVRI-----EHFGLNM--IKLINAHDSHIACFTLTLDGLLLATAS  235 (411)
Q Consensus       167 ~~~~~~~~--~~~~~~~~~~~--~~~l~~~g~~dg~i~i-----~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s  235 (411)
                      .......+  ...|.|..++.  ..++++.-...+.|+.     |... ..  ..........|.+++.+++|++++.|+
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT  300 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGT  300 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence            65432222  23445554442  2233433334444544     3332 11  111222345799999999999999999


Q ss_pred             CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      .||. |-|++..+.+.++.++.. |...|+.+.|+||.+++++.+.|.++.|..+.-.+.
T Consensus       301 ~dGs-Vai~~~~~lq~~~~vk~a-H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~  358 (398)
T KOG0771|consen  301 MDGS-VAIYDAKSLQRLQYVKEA-HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKT  358 (398)
T ss_pred             cCCc-EEEEEeceeeeeEeehhh-heeeeeeEEEcCCcCcccccccCCceeEEEEeeccc
Confidence            9999 999999888888777654 888999999999999999999999999999876443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=2e-14  Score=122.20  Aligned_cols=202  Identities=15%  Similarity=0.184  Sum_probs=146.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc-ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      .++|+|.+|++|++.+|++. ...|.||.....+ ......+..|...+..+.|.+....+++++.|     ..-+||..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~d-----rnayVw~~   84 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD-----RNAYVWTQ   84 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCC-----CCcccccc
Confidence            46899999999999999999 8899999988755 34445566788888889999999999999988     88889986


Q ss_pred             -CCCcEEEE---EeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198          122 -HQSRCIGE---FAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       122 -~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (411)
                       ..++-..+   ++++...+++.|+|.+                                         ..+|+ |+...
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~e-----------------------------------------nkFAV-gSgar  122 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKE-----------------------------------------NKFAV-GSGAR  122 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcC-----------------------------------------ceEEe-ccCcc
Confidence             33322211   1244444444444433                                         33333 44555


Q ss_pred             eEEEEEcCCcce-----EEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECC-----C-------------CceEEE
Q 015198          198 QVRIEHFGLNMI-----KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-----D-------------GTRLQE  254 (411)
Q Consensus       198 ~i~i~~~~~~~~-----~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-----~-------------~~~~~~  254 (411)
                      .|.|+.+..+.-     ..-+.++..|++++|+|++-+|++|+.|+. .|||..-     .             |+++.+
T Consensus       123 ~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E  201 (361)
T KOG1523|consen  123 LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE  201 (361)
T ss_pred             EEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence            566644443221     122456788999999999999999999999 9999631     1             233334


Q ss_pred             EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      +..  ..+.|..+.|+|+|..|+-.+.|..+.+=|-..+.+
T Consensus       202 ~~~--~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~  240 (361)
T KOG1523|consen  202 ASS--SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE  240 (361)
T ss_pred             hcc--CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence            432  456899999999999999999999999988877753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.65  E-value=1.5e-13  Score=119.93  Aligned_cols=209  Identities=13%  Similarity=0.158  Sum_probs=147.1

Q ss_pred             CCeEEEEEcC-----CCCEEEEEe----CCcEEEEecCCCcceEE--eecCCCCEEEEEEeccC-CeEEEEecCCCCCCC
Q 015198           45 IELISVSWNQ-----DYGCFAAGT----SCGFRIYNCEPFKETFR--RDLKSGGFRIVEMLFRC-NILALVGAGDNSQYP  112 (411)
Q Consensus        45 ~~V~~l~~s~-----~g~~la~g~----dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~  112 (411)
                      =.|+..+|..     +.++||+-.    .|...+.-+..-+++-.  -.+.+|...+..+.|+| +...+++|++|    
T Consensus        28 IrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD----  103 (472)
T KOG0303|consen   28 IRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSED----  103 (472)
T ss_pred             eeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCC----
Confidence            3566666653     355666533    33344443332111100  11347888999999998 67889999998    


Q ss_pred             CCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          113 PTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                       .+|.||++..+.....+                               -+.+..+.+|...+..+.+++...+ .|++ 
T Consensus       104 -~~v~vW~IPe~~l~~~l-------------------------------tepvv~L~gH~rrVg~V~wHPtA~N-VLls-  149 (472)
T KOG0303|consen  104 -TKVMVWQIPENGLTRDL-------------------------------TEPVVELYGHQRRVGLVQWHPTAPN-VLLS-  149 (472)
T ss_pred             -ceEEEEECCCcccccCc-------------------------------ccceEEEeecceeEEEEeecccchh-hHhh-
Confidence             99999997665432211                               1556677888888888888887664 3444 


Q ss_pred             cCCCCeEEEEEcCCcc-eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCc-ceEEEEeC
Q 015198          193 GLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA-EIYSIALS  270 (411)
Q Consensus       193 g~~dg~i~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~-~v~~l~~s  270 (411)
                      ++.|.+|.+|+..... +..+. |...|+++.|+.||.+|++.+.|.. |||||.++++.+.+-..  |.+ .-..+.|-
T Consensus       150 ag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~~~v~e~~~--heG~k~~Raifl  225 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRGTVVSEGVA--HEGAKPARAIFL  225 (472)
T ss_pred             ccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eEEEcCCCCcEeeeccc--ccCCCcceeEEe
Confidence            4479999999987644 44455 9999999999999999999999999 99999999999988766  433 45566788


Q ss_pred             CCCCEEEEEe---CCCcEEEEEcccccc
Q 015198          271 PNVQWLAVAS---DKGTVHIFSLRVRVV  295 (411)
Q Consensus       271 pdg~~l~s~s---~dg~I~vwd~~~~~~  295 (411)
                      .+|.++.+|-   .+..+-+||-.+-++
T Consensus       226 ~~g~i~tTGfsr~seRq~aLwdp~nl~e  253 (472)
T KOG0303|consen  226 ASGKIFTTGFSRMSERQIALWDPNNLEE  253 (472)
T ss_pred             ccCceeeeccccccccceeccCcccccC
Confidence            8888544443   467899998776654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.64  E-value=2.3e-12  Score=121.93  Aligned_cols=238  Identities=20%  Similarity=0.327  Sum_probs=180.4

Q ss_pred             CCeEEEEE-cCCCC-EEEE-Ee-CCcEEEEecCC-CcceEEeecCCCCEEEEEEeccCCeEEEEecCC-CCCCCCCeEEE
Q 015198           45 IELISVSW-NQDYG-CFAA-GT-SCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNILALVGAGD-NSQYPPTKVII  118 (411)
Q Consensus        45 ~~V~~l~~-s~~g~-~la~-g~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~~~d~~i~v  118 (411)
                      ..+..+.+ ++++. +++. +. ++.+.+|+... ......  +..+...+..+.|++++..++.++. +     +.+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~  182 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT--LEGHSESVTSLAFSPDGKLLASGSSLD-----GTIKL  182 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEE--EecCcccEEEEEECCCCCEEEecCCCC-----CceEE
Confidence            47777777 88887 4444 34 89999999986 333333  3367777788999999877777764 6     99999


Q ss_pred             EECCCCcEEEEEe-ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeE-EEeccCCCcceEEEccCCCceEEEEe
Q 015198          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLH-QIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      |++..+..+..+. |...+.+++|+|++. .++   .|+.|++||...+..+. .+..|.... ...+.+..  ..++ +
T Consensus       183 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-~  258 (466)
T COG2319         183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG--SLLA-S  258 (466)
T ss_pred             EEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC--CEEE-E
Confidence            9999888888887 799999999999986 444   68999999988777777 577776644 44455544  4555 5


Q ss_pred             cCCCCeEEEEEcCCcc--eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198          193 GLQRGQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       193 g~~dg~i~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (411)
                      ++.++.+++|+.....  ...+..|...+.++.|+|++..+++++.|+. +++||+.+...........|...+..+.|.
T Consensus       259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (466)
T COG2319         259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFS  337 (466)
T ss_pred             ecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEEeeecccCCceEEEEEC
Confidence            7799999998876433  3444678899999999998888888999988 999999888776666511266578999994


Q ss_pred             CCCCEEEEE-eCCCcEEEEEccccc
Q 015198          271 PNVQWLAVA-SDKGTVHIFSLRVRV  294 (411)
Q Consensus       271 pdg~~l~s~-s~dg~I~vwd~~~~~  294 (411)
                      +++..++.+ ..|+.+.+|++....
T Consensus       338 ~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         338 PDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             CCCCEEEEeecCCCcEEeeecCCCc
Confidence            343556655 678889999998876

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.64  E-value=5.9e-15  Score=133.28  Aligned_cols=203  Identities=13%  Similarity=0.125  Sum_probs=159.8

Q ss_pred             EEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCc
Q 015198           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSD  135 (411)
Q Consensus        58 ~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~  135 (411)
                      .|+.++ ||.+.|.+-..  . .......|...+.+-.|+++|..+++.++|     |.|++|. ++|-...++. ...+
T Consensus        77 ~~~i~s~DGkf~il~k~~--r-VE~sv~AH~~A~~~gRW~~dGtgLlt~GED-----G~iKiWS-rsGMLRStl~Q~~~~  147 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSA--R-VERSISAHAAAISSGRWSPDGAGLLTAGED-----GVIKIWS-RSGMLRSTVVQNEES  147 (737)
T ss_pred             eEEEEcCCceEEEecccc--h-hhhhhhhhhhhhhhcccCCCCceeeeecCC-----ceEEEEe-ccchHHHHHhhcCce
Confidence            455555 99998877542  2 222244788888899999999999999998     9999999 6776555544 7889


Q ss_pred             eeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEe
Q 015198          136 VRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN  213 (411)
Q Consensus       136 i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~  213 (411)
                      |+|++|.|+...++  ..+.+.|=.+.....+-.++.|.+  -+++++|++...++++ |++|-..++|+-.+..+..-.
T Consensus       148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDG--iiL~~~W~~~s~lI~s-gGED~kfKvWD~~G~~Lf~S~  224 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDG--LVLSLSWSTQSNIIAS-GGEDFRFKIWDAQGANLFTSA  224 (737)
T ss_pred             eEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCc--EEEEeecCccccceee-cCCceeEEeecccCcccccCC
Confidence            99999999877666  778888888876666667788887  6677888887777765 779999999999999999999


Q ss_pred             ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198          214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF  288 (411)
Q Consensus       214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vw  288 (411)
                      .|+.+|++++|+|+ +.++.++.+ . .|            +... ..+.|..++||+||..++.|+..|.+.+=
T Consensus       225 ~~ey~ITSva~npd-~~~~v~S~n-t-~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  225 AEEYAITSVAFNPE-KDYLLWSYN-T-AR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             hhccceeeeeeccc-cceeeeeee-e-ee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEe
Confidence            99999999999999 666666543 3 44            2222 45689999999999999999999976543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.64  E-value=3.3e-14  Score=123.98  Aligned_cols=226  Identities=12%  Similarity=0.125  Sum_probs=161.9

Q ss_pred             cccCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcce-----EEeecCCCCEEEEEEeccCCe-EEEEecCCCC
Q 015198           38 AFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKET-----FRRDLKSGGFRIVEMLFRCNI-LALVGAGDNS  109 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~  109 (411)
                      ....+|.++|..++|+|-+ ..||+|+ |.+|.||.+-.....     ....|.+|...+--+.|+|.. .+|++++.| 
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D-  153 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD-  153 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC-
Confidence            4578999999999999964 5677888 999999998643221     123355788888888899853 567777776 


Q ss_pred             CCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          110 QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                          ++|.+||+.+|+.+.++.|...|.++.|+.||.+++   .|..|+|||.++++.+..-..|.+... ....+-.++
T Consensus       154 ----n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~-~Raifl~~g  228 (472)
T KOG0303|consen  154 ----NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP-ARAIFLASG  228 (472)
T ss_pred             ----ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc-ceeEEeccC
Confidence                999999999999999999999999999999999998   799999999999999988866655333 223333444


Q ss_pred             eEEEEecC---CCCeEEEEEcCC--cc--eEEEeccccceeEEEecCCCCEEEE-EcCCCeEEEEEECCCCce-EEEEeC
Q 015198          187 SVLACPGL---QRGQVRIEHFGL--NM--IKLINAHDSHIACFTLTLDGLLLAT-ASTRGTLIRIFNTVDGTR-LQEVRR  257 (411)
Q Consensus       187 ~~l~~~g~---~dg~i~i~~~~~--~~--~~~~~~~~~~i~~l~~sp~g~~l~s-~s~dg~~I~vwd~~~~~~-~~~~~~  257 (411)
                      . ++++|.   .+..+.+|+...  .+  ...+. ....|.---|.+|..++.. |-.|+. ||.|.+....+ ++-+..
T Consensus       229 ~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~hyln~  305 (472)
T KOG0303|consen  229 K-IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVHYLNT  305 (472)
T ss_pred             c-eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeEEecc
Confidence            4 556663   466778887654  22  22222 2344555567888887654 556888 99999876553 222322


Q ss_pred             CCCCcceEEEEeCCC
Q 015198          258 GVDRAEIYSIALSPN  272 (411)
Q Consensus       258 ~~~~~~v~~l~~spd  272 (411)
                      .....+-..+.|-|.
T Consensus       306 f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  306 FSSKEPQRGMGFMPK  320 (472)
T ss_pred             cccCCcccccccccc
Confidence            113345566777664

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.63  E-value=1.2e-14  Score=123.55  Aligned_cols=228  Identities=12%  Similarity=0.133  Sum_probs=164.0

Q ss_pred             CCCeEEEEEc-------CCCCEEEEEe-CCcEEEEecCCCcceEEeecCC---CCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           44 EIELISVSWN-------QDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKS---GGFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        44 ~~~V~~l~~s-------~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      ..-|+..+|=       |+..++|+.+ +.-|++||.-+++.......-.   .-....++.|++++..|..|-.     
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-----  178 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-----  178 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-----
Confidence            4456776664       6677888888 9999999998766443322211   2234577899999999888766     


Q ss_pred             CCeEEEEEC-CCCcEEEEE---e-----ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeEEEeccCCCcceEE
Q 015198          113 PTKVIIWDD-HQSRCIGEF---A-----FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCC  179 (411)
Q Consensus       113 d~~i~vwd~-~~~~~~~~~---~-----~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  179 (411)
                       +.|+++|+ +.|..-..+   .     ..+-|.+++|+|... .++   ....+-||.-..+.++..+.+|.+.+  ..
T Consensus       179 -rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv--Th  255 (406)
T KOG2919|consen  179 -RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV--TH  255 (406)
T ss_pred             -ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe--ee
Confidence             89999998 555432222   2     267789999999665 444   45666677766778888888888844  45


Q ss_pred             EccCCCceEEEEecCCCCeEEEEEcCC--cceEEEecccc-ceeEE--EecCCCCEEEEEcCCCeEEEEEECCC-CceEE
Q 015198          180 LSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDS-HIACF--TLTLDGLLLATASTRGTLIRIFNTVD-GTRLQ  253 (411)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~-~i~~l--~~sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~  253 (411)
                      +.+.++|..|.+.+..+-.|..|+.+.  .++..+..|.. .-..|  ...|++++|++|+.||. |++||+++ |..+.
T Consensus       256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~-V~vwdlk~~gn~~s  334 (406)
T KOG2919|consen  256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS-VRVWDLKDLGNEVS  334 (406)
T ss_pred             EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc-EEEEecCCCCCccc
Confidence            555556667776555677788899875  45666666655 22334  44689999999999999 99999988 66566


Q ss_pred             EEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198          254 EVRRGVDRAEIYSIALSPNVQWLAVASDK  282 (411)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~d  282 (411)
                      .+..  +...++.++++|--.++|+++..
T Consensus       335 v~~~--~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  335 VTGN--YSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccc--ccccccceecCcccceeeeccCc
Confidence            6655  77789999999997788877654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.62  E-value=1.4e-13  Score=117.46  Aligned_cols=186  Identities=13%  Similarity=0.052  Sum_probs=123.0

Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEE
Q 015198           49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG  128 (411)
Q Consensus        49 ~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~  128 (411)
                      -.+|+|+|+++|+..+-.+.|-|.++.+......   --..+.-+.|..+..++..+..    .++.|.+|++...+-..
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~---cldki~yieW~ads~~ilC~~y----k~~~vqvwsl~Qpew~c   85 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFL---CLDKIVYIEWKADSCHILCVAY----KDPKVQVWSLVQPEWYC   85 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHH---HHHHhhheeeeccceeeeeeee----ccceEEEEEeecceeEE
Confidence            4689999999999997788888888754322111   1122444556666554444322    34899999999998888


Q ss_pred             EEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC--------
Q 015198          129 EFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ--------  195 (411)
Q Consensus       129 ~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--------  195 (411)
                      .+. ....+.+++|+|||+.+.    .+-.|.+|.+.+.+....-. ....+  -.+++++++++.+.....        
T Consensus        86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK~~~--kg~~f~~dg~f~ai~sRrDCkdyv~i  162 (447)
T KOG4497|consen   86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-PKTNV--KGYAFHPDGQFCAILSRRDCKDYVQI  162 (447)
T ss_pred             EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-cccCc--eeEEECCCCceeeeeecccHHHHHHH
Confidence            888 688999999999997777    58899999998766543322 22222  344455555555543321        


Q ss_pred             ---------------------------CCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          196 ---------------------------RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       196 ---------------------------dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                                                 +..+.+|+.-.+.........-.+..++|+|.+++|+.|+.|+. +||.+
T Consensus       163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvln  238 (447)
T KOG4497|consen  163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLN  238 (447)
T ss_pred             HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchh-hhhhc
Confidence                                       22233344333322222223457888999999999999999998 88765

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=2e-14  Score=123.13  Aligned_cols=184  Identities=10%  Similarity=0.153  Sum_probs=138.9

Q ss_pred             EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc---ceEEEeccc-cceeEEEec
Q 015198          150 LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHD-SHIACFTLT  225 (411)
Q Consensus       150 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~-~~i~~l~~s  225 (411)
                      .+|.|++||..+++.+..++.+......+.|.-.. +...+.+++.||.|++|+.+..   .......+. .+..+++.+
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n  126 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN  126 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence            79999999999999999999888777777776643 2334556789999999997753   334445555 567788887


Q ss_pred             CCCCEEEEEcC----CCeEEEEEECCCCce-EEEEeCCCCCcceEEEEeCC-CCCEEEEEeCCCcEEEEEccccccCCCC
Q 015198          226 LDGLLLATAST----RGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDS  299 (411)
Q Consensus       226 p~g~~l~s~s~----dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~  299 (411)
                      -.++++++|..    +-. |.+||++..+. +..+... |...|+++.|+| +.++|++|+.||-|.|||+....+.. .
T Consensus       127 ck~~ii~~GtE~~~s~A~-v~lwDvR~~qq~l~~~~eS-H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD-a  203 (376)
T KOG1188|consen  127 CKKNIIACGTELTRSDAS-VVLWDVRSEQQLLRQLNES-HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED-A  203 (376)
T ss_pred             CcCCeEEeccccccCceE-EEEEEeccccchhhhhhhh-ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchh-h
Confidence            78888888764    455 99999998876 5555443 888999999999 45689999999999999998774332 1


Q ss_pred             CCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC--CEEEEEE
Q 015198          300 SSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVS  377 (411)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  377 (411)
                      ..+                                          +++         . ...+..+.|..+  .+|.+.+
T Consensus       204 L~~------------------------------------------viN---------~-~sSI~~igw~~~~ykrI~clT  231 (376)
T KOG1188|consen  204 LLH------------------------------------------VIN---------H-GSSIHLIGWLSKKYKRIMCLT  231 (376)
T ss_pred             HHH------------------------------------------hhc---------c-cceeeeeeeecCCcceEEEEE
Confidence            111                                          111         1 124567889887  5999999


Q ss_pred             eCCcEEEEEEec
Q 015198          378 MDGSFYRCSFDP  389 (411)
Q Consensus       378 ~dg~~~~~~~~~  389 (411)
                      ..+.+++|++..
T Consensus       232 H~Etf~~~ele~  243 (376)
T KOG1188|consen  232 HMETFAIYELED  243 (376)
T ss_pred             ccCceeEEEccC
Confidence            999999999987

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.62  E-value=2.3e-13  Score=114.31  Aligned_cols=240  Identities=14%  Similarity=0.144  Sum_probs=167.0

Q ss_pred             CCCeEEEEEcC--C-CCEEEEEe-----CCcEEEEecCC--CcceEEeecCCCCEEEEEEeccCCe-----EEEEecCCC
Q 015198           44 EIELISVSWNQ--D-YGCFAAGT-----SCGFRIYNCEP--FKETFRRDLKSGGFRIVEMLFRCNI-----LALVGAGDN  108 (411)
Q Consensus        44 ~~~V~~l~~s~--~-g~~la~g~-----dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~s~~~d  108 (411)
                      .-+++++.|+.  + +.+||.|+     .+.|.|-.++.  .+.+....| .+.-.+..+.|.|+.     .+|++++  
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f-d~~YP~tK~~wiPd~~g~~pdlLATs~--  120 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF-DHPYPVTKLMWIPDSKGVYPDLLATSS--  120 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC-CCCCCccceEecCCccccCcchhhccc--
Confidence            45688999983  3 45788888     46677766653  222222333 677778888888765     3566654  


Q ss_pred             CCCCCCeEEEEECCC--CcEEEE--E------eecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCce---eeEEEecc
Q 015198          109 SQYPPTKVIIWDDHQ--SRCIGE--F------AFRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLK---LLHQIETL  171 (411)
Q Consensus       109 ~~~~d~~i~vwd~~~--~~~~~~--~------~~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~---~~~~~~~~  171 (411)
                           ..+++|.+..  .+....  +      .+..+++++.|+.-.. ++.   .|.+..|||++++.   ...++-.|
T Consensus       121 -----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH  195 (364)
T KOG0290|consen  121 -----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH  195 (364)
T ss_pred             -----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence                 6899999763  222111  1      2578999999987443 333   79999999998863   34556678


Q ss_pred             CCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE-EEe---ccccceeEEEecCC-CCEEEEEcCCCeEEEEEEC
Q 015198          172 ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-LIN---AHDSHIACFTLTLD-GLLLATASTRGTLIRIFNT  246 (411)
Q Consensus       172 ~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-~~~---~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~  246 (411)
                      ...+..++|.-.+ ..++|+ .+.||.+++++.+...-. .+.   ....+...++|++. -+++|+-..|...|.|.|+
T Consensus       196 DKEV~DIaf~~~s-~~~FAS-vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi  273 (364)
T KOG0290|consen  196 DKEVYDIAFLKGS-RDVFAS-VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI  273 (364)
T ss_pred             CcceeEEEeccCc-cceEEE-ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence            8866666665522 234555 458999999766553322 222   22567788889864 4688887777666999999


Q ss_pred             CCC-ceEEEEeCCCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEEcccccc
Q 015198          247 VDG-TRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       247 ~~~-~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      +.. ..+.++.+  |.+.|+.++|.|.. ..|++++.|..+.+||++..-.
T Consensus       274 R~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  274 RVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             cCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            864 56778888  99999999999954 5899999999999999987653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=4.3e-13  Score=109.98  Aligned_cols=195  Identities=10%  Similarity=0.105  Sum_probs=134.8

Q ss_pred             EEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC---------C-cEEEEEe-ecCceeEEEEcCCeEEEEEcCeEEEEE
Q 015198           90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ---------S-RCIGEFA-FRSDVRSVKLSRDRIVVVLEHKIYVYS  158 (411)
Q Consensus        90 ~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~---------~-~~~~~~~-~~~~i~~~~~~~~~~~~~~dg~i~iwd  158 (411)
                      +.+-+++|...+++.+..+     |.|.+..+++         + ..+...+ |.++|+.++|..+-.+.+.||.|+-|.
T Consensus        13 vf~qa~sp~~~~l~agn~~-----G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~   87 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLF-----GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWE   87 (325)
T ss_pred             HHHHhhCCcceEEEEecCC-----CeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEee
Confidence            4445678888889998887     9999998653         2 2233334 899999999996666666899999998


Q ss_pred             cCCce------eeEEEec--c-----CCCcceEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEEEeccccceeEEEe
Q 015198          159 FVDLK------LLHQIET--L-----ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTL  224 (411)
Q Consensus       159 ~~~~~------~~~~~~~--~-----~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~l~~  224 (411)
                      .+...      .+.....  +     ...+..+.+.|..  .-++.+| .|+.++-|+. +++..+.+++|...|.++.-
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~  164 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVG  164 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence            64321      1111111  1     1123334444443  3344445 6889988654 56777889999999999988


Q ss_pred             cCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCc--------ceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          225 TLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA--------EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       225 sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~--------~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      -.....+++|++||+ +|+||.++++.+..+....++.        .|.+++  -+..+|++|+.- .+.+|+++..++.
T Consensus       165 R~~~~qilsG~EDGt-vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp-~lslwhLrsse~t  240 (325)
T KOG0649|consen  165 RNANGQILSGAEDGT-VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGP-KLSLWHLRSSEST  240 (325)
T ss_pred             cccCcceeecCCCcc-EEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCC-ceeEEeccCCCce
Confidence            554556899999999 9999999999998886543332        344444  456788777654 5999999987643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=8.8e-15  Score=130.77  Aligned_cols=255  Identities=11%  Similarity=0.089  Sum_probs=181.8

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC--CeEEEEecCCCCCC
Q 015198           35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQY  111 (411)
Q Consensus        35 ~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~  111 (411)
                      .+...+..|.+.|..|.|+..|..|++|+ |..|.+||+......+...- +|...+....|-|  +..-+++++.|   
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-GH~~NvfQaKFiP~s~d~ti~~~s~d---  208 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-GHCNNVFQAKFIPFSGDRTIVTSSRD---  208 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc-ccccchhhhhccCCCCCcCceecccc---
Confidence            34456789999999999999999999999 99999999988666655432 5666666655555  45678888887   


Q ss_pred             CCCeEEEEEC-CCCcEEEEE---eecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEec--cCC--CcceEE
Q 015198          112 PPTKVIIWDD-HQSRCIGEF---AFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIET--LAN--LRGLCC  179 (411)
Q Consensus       112 ~d~~i~vwd~-~~~~~~~~~---~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~--~~~--~~~~~~  179 (411)
                        |.+++=.+ .++.+..+.   +|.++|..++.-|+....+    .|+.+.-+|++.+.....+..  +..  .+....
T Consensus       209 --gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~  286 (559)
T KOG1334|consen  209 --GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYT  286 (559)
T ss_pred             --CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeee
Confidence              99998874 444443232   3899999999988766555    789999999987654433321  222  256667


Q ss_pred             EccCCCceEEEEecCCCCeEEEEEcCCc-------ceEEEe------ccccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198          180 LSHHSSTSVLACPGLQRGQVRIEHFGLN-------MIKLIN------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (411)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~i~i~~~~~~-------~~~~~~------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (411)
                      ++.+|.+....++|+.|..+++++...-       .+..+.      ...-.|++++|+.++.-|.++..|-. |++|.-
T Consensus       287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~  365 (559)
T KOG1334|consen  287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNK  365 (559)
T ss_pred             EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEecc
Confidence            7777776655556778999999665431       122222      22356999999988877777777877 999953


Q ss_pred             CC--C----------ceEEE-EeCCCCCcceEEEEeC-CCCCEEEEEeCCCcEEEEEccccccC
Q 015198          247 VD--G----------TRLQE-VRRGVDRAEIYSIALS-PNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       247 ~~--~----------~~~~~-~~~~~~~~~v~~l~~s-pdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      .-  |          ..+.. ++++.....|..+-|- |...++++|+.-|.|.||+-.+++..
T Consensus       366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii  429 (559)
T KOG1334|consen  366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII  429 (559)
T ss_pred             ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence            32  2          22223 6665445577777664 78899999999999999999888754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.61  E-value=3.2e-15  Score=132.81  Aligned_cols=196  Identities=15%  Similarity=0.171  Sum_probs=168.0

Q ss_pred             EEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceee
Q 015198           88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLL  165 (411)
Q Consensus        88 ~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~  165 (411)
                      .....+.|..+|..++-++.-     |.|..+|..+++...++.....|.++.|-.+.++++  ....++||| ..|..+
T Consensus       130 FGPY~~~ytrnGrhlllgGrK-----GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtEl  203 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRK-----GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTEL  203 (545)
T ss_pred             cCCeeeeecCCccEEEecCCc-----cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcEE
Confidence            345677888899988888877     999999999999999999999999999999888887  789999999 567778


Q ss_pred             EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198          166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF  244 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw  244 (411)
                      +.++.+.   .+..+.+-|...+| ++++..|.++. +...++.+..+....+.+..++-+|-...+-+|...|. |.+|
T Consensus       204 HClk~~~---~v~rLeFLPyHfLL-~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlW  278 (545)
T KOG1272|consen  204 HCLKRHI---RVARLEFLPYHFLL-VAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLW  278 (545)
T ss_pred             eehhhcC---chhhhcccchhhee-eecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEec
Confidence            8887654   34455555554444 45778899888 77778888888888899999999999999999999999 9999


Q ss_pred             ECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          245 NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      .....+++..+..  |.++|.+|++.++|+++++.+.|..++|||++.-...
T Consensus       279 SP~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  279 SPNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             CCCCcchHHHHHh--cCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence            9988888877777  9999999999999999999999999999999987744

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.8e-13  Score=129.01  Aligned_cols=171  Identities=13%  Similarity=0.033  Sum_probs=118.4

Q ss_pred             CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---E---cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                      ..|.+||..... .+.+. +...+....|+||+..++   .   +..|++||+.+++...... ...  ......++|++
T Consensus       184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g--~~~~~~wSPDG  259 (429)
T PRK01742        184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG--HNGAPAFSPDG  259 (429)
T ss_pred             EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC--ccCceeECCCC
Confidence            799999976555 34444 677899999999998887   2   2479999998875432211 111  11245667777


Q ss_pred             eEEEEecCCCCeEEEE--EcCCcceEEEeccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCC-ceEEEEeCCCCCc
Q 015198          187 SVLACPGLQRGQVRIE--HFGLNMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDG-TRLQEVRRGVDRA  262 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~--~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~-~~~~~~~~~~~~~  262 (411)
                      ..|+++...+|.+.||  +........+..+...+..+.|+|||+.|+.++ .++. ..||++... .....+ .  +..
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~--~~~  335 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-G--GRG  335 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-c--CCC
Confidence            8888766677876664  555566677777777888999999999776554 5677 888876432 222223 2  322


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                        ....|+|||++|+..+.++ +.+||+.+++.
T Consensus       336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~  365 (429)
T PRK01742        336 --YSAQISADGKTLVMINGDN-VVKQDLTSGST  365 (429)
T ss_pred             --CCccCCCCCCEEEEEcCCC-EEEEECCCCCe
Confidence              4578999999998887765 67799988763

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=1.3e-12  Score=107.17  Aligned_cols=239  Identities=12%  Similarity=0.137  Sum_probs=160.0

Q ss_pred             CCCccccCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcc------eEEeec--CC---CCEEEEEEeccCCeEEE
Q 015198           34 HPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE------TFRRDL--KS---GGFRIVEMLFRCNILAL  102 (411)
Q Consensus        34 ~~~~~~~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~------~~~~~~--~~---~~~~~~~~~~~~~~~~l  102 (411)
                      .........|+++|+.++|.  ..+|++|+||.|+=|......+      .++...  +.   .-..|.+|...|...-+
T Consensus        52 k~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi  129 (325)
T KOG0649|consen   52 KLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI  129 (325)
T ss_pred             CcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE
Confidence            33334458899999999999  4588888899999998764332      111111  11   11234556666543333


Q ss_pred             EecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEE-cCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCC----
Q 015198          103 VGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKL-SRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANL----  174 (411)
Q Consensus       103 ~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~-~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~----  174 (411)
                      +.++.|     +.++-||+++|+...+++ |...|.++.- +..++++.  .||++++||.++++.++.+....++    
T Consensus       130 ~~AgGD-----~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR  204 (325)
T KOG0649|consen  130 LFAGGD-----GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR  204 (325)
T ss_pred             EEecCC-----eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC
Confidence            333344     999999999999999999 9999999988 66777776  8999999999999999888654322    


Q ss_pred             ----cceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc
Q 015198          175 ----RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT  250 (411)
Q Consensus       175 ----~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~  250 (411)
                          .++.+++.+.  ..|++.|  ...+.+|..........-.-.+++..+.|..  ..+++++..+. |.-|.+ .|.
T Consensus       205 p~~g~wigala~~e--dWlvCGg--Gp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~-v~~~~l-~Gv  276 (325)
T KOG0649|consen  205 PDWGKWIGALAVNE--DWLVCGG--GPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNH-VQSYTL-NGV  276 (325)
T ss_pred             cccCceeEEEeccC--ceEEecC--CCceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccc-eeeeee-ccE
Confidence                2345555554  4677643  5678889887655444444566677777854  45777777777 999986 566


Q ss_pred             eEEEEeCCCCCcceEEEEeCCC-CCEEEEEeCCCcEEEEE
Q 015198          251 RLQEVRRGVDRAEIYSIALSPN-VQWLAVASDKGTVHIFS  289 (411)
Q Consensus       251 ~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~I~vwd  289 (411)
                      ....+...  ....++..|+.. -++|-.++....+.|+.
T Consensus       277 l~a~ip~~--s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  277 LQANIPVE--STACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             EEEeccCC--ccceeeecccCCceEEEEecccceeeeeee
Confidence            65555553  224555555533 34566667777777763

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1e-13  Score=131.89  Aligned_cols=215  Identities=10%  Similarity=0.041  Sum_probs=142.6

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-C---CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEec-CCCCCCCC
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-S---CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGA-GDNSQYPP  113 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~~~d  113 (411)
                      ....|...+.+++|+|||+.|+..+ +   ..|.+||+.+........+.++   .....|+|++..++.+ ..+     
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~-----  269 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKD-----  269 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecC-----
Confidence            3566788899999999999999876 3   3699999987543333323222   2357899998766554 334     


Q ss_pred             Ce--EEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCC-ceeeEEEeccCCCcceEEEccCCCc
Q 015198          114 TK--VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       114 ~~--i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                      +.  |.+||+.+++......+...+....|+||+..++    .++...+|++.. +.....+ .+..    ....++|++
T Consensus       270 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~----~~~~~SpDG  344 (429)
T PRK01742        270 GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG----YSAQISADG  344 (429)
T ss_pred             CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC----CCccCCCCC
Confidence            54  5556777776544334666788999999998766    357777777643 2222223 2221    234567778


Q ss_pred             eEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEEC--CCCceEEEEeCCCCCcce
Q 015198          187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT--VDGTRLQEVRRGVDRAEI  264 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~--~~~~~~~~~~~~~~~~~v  264 (411)
                      ..|++.+ .++. .+|+........+..+ .....+.|+|+|++|+.++.++. +.+|++  .+|+.+..+..  +.+.+
T Consensus       345 ~~ia~~~-~~~i-~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~~~G~~~~~l~~--~~g~~  418 (429)
T PRK01742        345 KTLVMIN-GDNV-VKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGL-GKVLQLVSADGRFKARLPG--SDGQV  418 (429)
T ss_pred             CEEEEEc-CCCE-EEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCC-ceEEEEEECCCCceEEccC--CCCCC
Confidence            8887765 3544 4455554433333322 23456789999999999999998 887775  36788888876  66778


Q ss_pred             EEEEeCCC
Q 015198          265 YSIALSPN  272 (411)
Q Consensus       265 ~~l~~spd  272 (411)
                      ...+|+|-
T Consensus       419 ~~p~wsp~  426 (429)
T PRK01742        419 KFPAWSPY  426 (429)
T ss_pred             CCcccCCC
Confidence            88999984

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.58  E-value=1.8e-13  Score=123.91  Aligned_cols=227  Identities=16%  Similarity=0.134  Sum_probs=142.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCc----ceEEeecCCCCEEEEEEe---ccCCeEEEEecCCCCCCCCCeEEE
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK----ETFRRDLKSGGFRIVEML---FRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      .+....++-.|++|+..-...+.+|+.....    .+.+..+........++.   -.+.+.-+..+-.-     |.|.+
T Consensus       125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~t-----Gqvq~  199 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTT-----GQVQL  199 (636)
T ss_pred             ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeecc-----CceEE
Confidence            3445555556778877667778888876311    111122222222222221   12333333333222     88888


Q ss_pred             EECCCCcEEEEEe-----ecCceeEEEEcCC--eEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          119 WDDHQSRCIGEFA-----FRSDVRSVKLSRD--RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       119 wd~~~~~~~~~~~-----~~~~i~~~~~~~~--~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      .|....+..+.+.     .+..++++.|-|.  +.+++  .+|.+++||..       +.   ......++...+++..+
T Consensus       200 idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~-------~~---~~~t~p~~~~~k~~~~f  269 (636)
T KOG2394|consen  200 IDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE-------IV---CGATAPSYQALKDGDQF  269 (636)
T ss_pred             ecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc-------cc---ccCCCCcccccCCCCee
Confidence            8865533222222     4688999999874  44555  79999999961       11   11111122222222222


Q ss_pred             EEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198          190 ACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (411)
                      +.--+      .......++..+..-.+.|..++|+|||++||+.+.||. +||||..+.+++..++.  .-+...|++|
T Consensus       270 ~i~t~------ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcW  340 (636)
T KOG2394|consen  270 AILTS------KSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCW  340 (636)
T ss_pred             EEeee------eccccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEE
Confidence            22100      011222555555556679999999999999999999999 99999999888777665  4567999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          270 SPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       270 spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      ||||++|++|++|.-|.||.+..++..
T Consensus       341 SPDGKyIvtGGEDDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  341 SPDGKYIVTGGEDDLVTVWSFEERRVV  367 (636)
T ss_pred             cCCccEEEecCCcceEEEEEeccceEE
Confidence            999999999999999999999988754

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.57  E-value=1.6e-11  Score=106.60  Aligned_cols=231  Identities=12%  Similarity=0.185  Sum_probs=160.7

Q ss_pred             CeEEEEEcCCCCEEEEEe-C--CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           46 ELISVSWNQDYGCFAAGT-S--CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~-d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      .|--+-|+.  .++|..+ +  +.++++++.....+....+   +..+.++....+..+++-  .      ..|.|||++
T Consensus        48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmNr~RLvV~L--e------e~IyIydI~  114 (391)
T KOG2110|consen   48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFF---PTSILAVRMNRKRLVVCL--E------ESIYIYDIK  114 (391)
T ss_pred             EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEec---CCceEEEEEccceEEEEE--c------ccEEEEecc
Confidence            344445543  4677666 3  3488888877666665543   455666666665544433  2      679999999


Q ss_pred             CCcEEEEEe----ecCceeEEEEcCCeEEEE-----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          123 QSRCIGEFA----FRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       123 ~~~~~~~~~----~~~~i~~~~~~~~~~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      +.+.++++.    +...+.++.+++.+.+++     ..|.|++||+.+.+.+..+..|..+  +.+++++++|.+||+ +
T Consensus       115 ~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~--lAalafs~~G~llAT-A  191 (391)
T KOG2110|consen  115 DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP--LAALAFSPDGTLLAT-A  191 (391)
T ss_pred             cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc--eeEEEECCCCCEEEE-e
Confidence            999999886    345677788888888888     5699999999999999999999884  455666667778876 5


Q ss_pred             CCCCe-EEEEE-cCCcceEEEecc--ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc-------------------
Q 015198          194 LQRGQ-VRIEH-FGLNMIKLINAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-------------------  250 (411)
Q Consensus       194 ~~dg~-i~i~~-~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-------------------  250 (411)
                      ++.|+ ||++. .+++.+..|..-  ...|.+++|+|++++|++.+..++ |+||.+..-.                   
T Consensus       192 SeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~~~~~~~~p~~~~~~~~~~sk  270 (391)
T KOG2110|consen  192 SEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKVSNNPPESPTAGTSWFGKVSK  270 (391)
T ss_pred             ccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEecccccCCCCCCCCCCcccchhhh
Confidence            56666 56654 456777777533  456889999999999999999999 9999875411                   


Q ss_pred             ------------------eEEEEeCCCCCc--ceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          251 ------------------RLQEVRRGVDRA--EIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       251 ------------------~~~~~~~~~~~~--~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                                        ...+.+.. ..+  .+..+.-.+...++.+++.||.++.|.+.-.+
T Consensus       271 ~~~sylps~V~~~~~~~R~FAt~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~  333 (391)
T KOG2110|consen  271 AATSYLPSQVSSVLDQSRKFATAKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKE  333 (391)
T ss_pred             hhhhhcchhhhhhhhhccceeEEEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCC
Confidence                              00001110 011  22222222467889999999999999997653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.57  E-value=1.7e-12  Score=128.10  Aligned_cols=270  Identities=12%  Similarity=0.078  Sum_probs=168.5

Q ss_pred             CCCCCccCcccCCC--CCCccccCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcce---EE--eecCCCCEEE
Q 015198           20 PNAGASASASASFG--HPQTAFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKET---FR--RDLKSGGFRI   90 (411)
Q Consensus        20 ~~~~~~~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~---~~--~~~~~~~~~~   90 (411)
                      |..|.+.+++....  -.+..++.+|...|..++.++.. .+|++|+ ||+|++|+.......   .+  .........+
T Consensus      1022 p~~~~~~~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~ 1101 (1431)
T KOG1240|consen 1022 PSAWSVGSPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRV 1101 (1431)
T ss_pred             CchhhcCCCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCce
Confidence            44554444333311  22445678899999999998765 9999999 999999998642211   11  1122233444


Q ss_pred             EEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc-------EEEEEe--ecCceeEEE-EcCC-eE-EEE---EcCeEE
Q 015198           91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-------CIGEFA--FRSDVRSVK-LSRD-RI-VVV---LEHKIY  155 (411)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~-------~~~~~~--~~~~i~~~~-~~~~-~~-~~~---~dg~i~  155 (411)
                      ..+...+++..++.++.|     |.|++.++....       +.....  ..+.+.++. +... +. .++   ..+.|.
T Consensus      1102 ~~vt~~~~~~~~Av~t~D-----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1102 EKVTMCGNGDQFAVSTKD-----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred             EEEEeccCCCeEEEEcCC-----CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence            455555555566666776     999999976621       111111  234444443 3222 11 222   678999


Q ss_pred             EEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcce-EEE-eccccceeEEEecCCC---CE
Q 015198          156 VYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI-KLI-NAHDSHIACFTLTLDG---LL  230 (411)
Q Consensus       156 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-~~~-~~~~~~i~~l~~sp~g---~~  230 (411)
                      .||++.......++.......+..+..++.+.+++. |...|.+.+|+.+.+.. ... ..+..+|..+..+|-.   ..
T Consensus      1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi-Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI-GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred             EecchhhhhHHhhhcCccccceeEEEecCCceEEEE-ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCce
Confidence            999988776666654444345666777777777765 88899999999887543 222 2456788888777633   34


Q ss_pred             EEEE-c-CCCeEEEEEECCCCceEEEEeCCC-----------------CCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          231 LATA-S-TRGTLIRIFNTVDGTRLQEVRRGV-----------------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       231 l~s~-s-~dg~~I~vwd~~~~~~~~~~~~~~-----------------~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      .+++ + ..+. |.+|++.+|.+...+....                 +.-......+..-+.++.+|+.|..|+.||..
T Consensus      1256 ~vs~~~~~~ne-vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1256 SVSAGSSSNNE-VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             EEEecccCCCc-eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            4444 4 4677 9999999997766665420                 11111223333445688899999999999998


Q ss_pred             ccccC
Q 015198          292 VRVVG  296 (411)
Q Consensus       292 ~~~~~  296 (411)
                      ..+..
T Consensus      1335 ~p~~s 1339 (1431)
T KOG1240|consen 1335 RPEIS 1339 (1431)
T ss_pred             Ccccc
Confidence            87643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.4e-12  Score=124.49  Aligned_cols=176  Identities=15%  Similarity=0.084  Sum_probs=119.2

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      ..|.+||...+.......+...+.+..|+||+..++  .    +..|++||+.+++... +.....  ......+++++.
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g--~~~~~~~SpDG~  260 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRG--INGAPSFSPDGR  260 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCC--CccCceECCCCC
Confidence            579999975544444344777899999999998777  1    3469999998876543 222222  223456667777


Q ss_pred             EEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC-CCe-EEEEEECCCCceEEEEeCCCCCcc
Q 015198          188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST-RGT-LIRIFNTVDGTRLQEVRRGVDRAE  263 (411)
Q Consensus       188 ~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~-~I~vwd~~~~~~~~~~~~~~~~~~  263 (411)
                      .|+++.+.+|  .|++++........+..+......++|+|||+.|+..+. ++. .|+++|+.+++... +..  +...
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~--~g~~  337 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF--QGNY  337 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec--CCCC
Confidence            7766554555  577788777777777766666678899999998887664 332 26677777766432 322  2223


Q ss_pred             eEEEEeCCCCCEEEEEeCCC---cEEEEEcccccc
Q 015198          264 IYSIALSPNVQWLAVASDKG---TVHIFSLRVRVV  295 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~  295 (411)
                      ...++|+|||++|+..+.++   .|.+||+.+++.
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~  372 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV  372 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence            45689999999998765443   599999977653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=7e-14  Score=123.15  Aligned_cols=191  Identities=15%  Similarity=0.205  Sum_probs=141.5

Q ss_pred             EEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcE
Q 015198           48 ISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~  126 (411)
                      .+++|+++|..|++|+ ||.+|||++......+..  ..|+..|-++.|++|+.++++-+.      ...+||++.++.+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e--~~~~~eV~DL~FS~dgk~lasig~------d~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE--IAHHAEVKDLDFSPDGKFLASIGA------DSARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh--HhhcCccccceeCCCCcEEEEecC------CceEEEEeccCch
Confidence            7899999999999999 999999998765554443  378889999999999999999887      4899999999977


Q ss_pred             EEEEe---ecCceeEEEEcCCe-----EEEE---EcCeEEEEEcCCc---eeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          127 IGEFA---FRSDVRSVKLSRDR-----IVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       127 ~~~~~---~~~~i~~~~~~~~~-----~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      +....   .+.....+.|+.|.     .+++   ..+.|+.||+...   +.++..+.-...-.+.+++.+.+|++++. 
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al-  298 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL-  298 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE-
Confidence            76665   34456677787766     2222   3566777766321   11111111111125677788888889887 


Q ss_pred             cCCCCeEEEEE-cCCcceEEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198          193 GLQRGQVRIEH-FGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (411)
Q Consensus       193 g~~dg~i~i~~-~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (411)
                      |+.||.|.|++ .+.+.++.. +.|...|+.+.|+|+.+++++.+.+.. +.|..+.-
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v  355 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV  355 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence            77899999954 444555544 579999999999999999999988888 88887643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=2.4e-12  Score=122.37  Aligned_cols=215  Identities=12%  Similarity=0.075  Sum_probs=142.2

Q ss_pred             cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe
Q 015198           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR  145 (411)
Q Consensus        66 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~  145 (411)
                      .|.+||.+......   +..+...+....|+|++..++..+..  .....|.+|++.+++..........+..+.|+|||
T Consensus       180 ~l~~~d~dg~~~~~---lt~~~~~~~~p~wSPDG~~la~~s~~--~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG  254 (429)
T PRK03629        180 ELRVSDYDGYNQFV---VHRSPQPLMSPAWSPDGSKLAYVTFE--SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG  254 (429)
T ss_pred             eEEEEcCCCCCCEE---eecCCCceeeeEEcCCCCEEEEEEec--CCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence            57777776533222   22455567889999998766643211  01268999999888765544455566778999999


Q ss_pred             EEEE----EcC--eEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEE--EcCCcceEEEecccc
Q 015198          146 IVVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE--HFGLNMIKLINAHDS  217 (411)
Q Consensus       146 ~~~~----~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~--~~~~~~~~~~~~~~~  217 (411)
                      ..++    .++  .|++||+.+++..+.... ..  ......++|++..|+++...++...||  +..+.....+..+..
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~--~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~  331 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RS--NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS  331 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CC--CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence            8777    233  699999988765443322 22  334566677778887766555555554  455555555655555


Q ss_pred             ceeEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCc---EEEEEcc
Q 015198          218 HIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT---VHIFSLR  291 (411)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~---I~vwd~~  291 (411)
                      ......|+|||++|+..+.+   .. |++||+.+++.. .+... .  ......|+|||++|+.++.++.   +.+++++
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~-I~~~dl~~g~~~-~Lt~~-~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLTDT-F--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCce-EEEEECCCCCeE-EeCCC-C--CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            56778999999998876543   35 889999888653 34332 1  2346789999999999888764   6677774


Q ss_pred             cc
Q 015198          292 VR  293 (411)
Q Consensus       292 ~~  293 (411)
                      .+
T Consensus       407 G~  408 (429)
T PRK03629        407 GR  408 (429)
T ss_pred             CC
Confidence            43

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.55  E-value=4.8e-13  Score=127.22  Aligned_cols=241  Identities=14%  Similarity=0.088  Sum_probs=162.1

Q ss_pred             CCCCCeEEEEEcCCCCEE-EEEe-CCcEEEEecCCCcce----EEeecCCCCEEEEEEeccCCe--EEEEecCCCCCCCC
Q 015198           42 VDEIELISVSWNQDYGCF-AAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNI--LALVGAGDNSQYPP  113 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~l-a~g~-dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~l~s~~~d~~~~d  113 (411)
                      .....|.|+.|+|....+ +.|. +|.|.+||+......    +......|...++.+.|..+-  .-+++++.|     
T Consensus       240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD-----  314 (555)
T KOG1587|consen  240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD-----  314 (555)
T ss_pred             ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC-----
Confidence            456789999999976555 5555 999999999865442    112224677788888876543  336677767     


Q ss_pred             CeEEEEECCCCcE-EEE-----E-------eecCceeEEEEcCC---eEEEE-EcCeEEEEEcCCce--------eeEEE
Q 015198          114 TKVIIWDDHQSRC-IGE-----F-------AFRSDVRSVKLSRD---RIVVV-LEHKIYVYSFVDLK--------LLHQI  168 (411)
Q Consensus       114 ~~i~vwd~~~~~~-~~~-----~-------~~~~~i~~~~~~~~---~~~~~-~dg~i~iwd~~~~~--------~~~~~  168 (411)
                      |.|..|+++.-.. ...     .       .....+++++|.+.   ..++. .+|.|+.-+....+        ....+
T Consensus       315 G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~  394 (555)
T KOG1587|consen  315 GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF  394 (555)
T ss_pred             CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc
Confidence            9999998654322 111     1       12346778888653   33333 67888774432211        12234


Q ss_pred             eccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC--CcceEEEeccccceeEEEecCCCC-EEEEEcCCCeEEEEEE
Q 015198          169 ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIRIFN  245 (411)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd  245 (411)
                      ..|..++..+...+-..  .++.+++ |.+++||...  ..++..+..+...+++++|||-.. .++++..||. |.+||
T Consensus       395 ~~h~g~v~~v~~nPF~~--k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWD  470 (555)
T KOG1587|consen  395 ITHIGPVYAVSRNPFYP--KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWD  470 (555)
T ss_pred             cccCcceEeeecCCCcc--ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhh
Confidence            44555555444444333  3333343 8999998866  456667777888899999999764 7788888999 99999


Q ss_pred             CCCCc--eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          246 TVDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       246 ~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      +....  ++.+...  +....+.+.|+++|+.|++|...|++++|++...
T Consensus       471 Ll~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  471 LLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             hhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            96543  3444433  4456778889999999999999999999999754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=6.4e-12  Score=119.53  Aligned_cols=175  Identities=15%  Similarity=0.103  Sum_probs=116.1

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      ..|.++|...........+...+.+.+|+||++.++  .    ...|++||+.+++... +.....  ......++|++.
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g--~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKG--SNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCC--CccceEECCCCC
Confidence            578888864433333344778899999999998777  2    2469999998886543 322222  233556677777


Q ss_pred             EEEEecCCCCeEEEEE--cCCcceEEEeccccceeEEEecCCCCEEEEEcC-CCeEEEEE--ECCCCceEEEEeCCCCCc
Q 015198          188 VLACPGLQRGQVRIEH--FGLNMIKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIF--NTVDGTRLQEVRRGVDRA  262 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~--~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vw--d~~~~~~~~~~~~~~~~~  262 (411)
                      .|+++.+.+|...||.  ..+.....+..+........|+|||+.|+..+. ++. ..||  ++.+++.. .+..  ...
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~~-~lt~--~g~  328 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAAQ-RVTF--TGS  328 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCceE-EEec--CCC
Confidence            7877666777766654  444555666666666677899999998876654 344 5555  44455432 2222  122


Q ss_pred             ceEEEEeCCCCCEEEEEeCCC---cEEEEEcccccc
Q 015198          263 EIYSIALSPNVQWLAVASDKG---TVHIFSLRVRVV  295 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~  295 (411)
                      .....+|+|||++|+..+.++   .|.+||+.+++.
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence            344678999999998777654   599999988763

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=3.1e-11  Score=110.34  Aligned_cols=238  Identities=13%  Similarity=0.183  Sum_probs=161.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC-----CCCeEEEEE
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY-----PPTKVIIWD  120 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~-----~d~~i~vwd  120 (411)
                      ++...+++++|+++|.+.+..++|++......++...+   . ...++.|+|-+.++.+-..-..+     ..-.+++|+
T Consensus        36 ~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~---~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   36 PCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL---K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             cceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc---c-eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            37888999999999999999999999988664444322   2 78889999988888764332111     124678999


Q ss_pred             CCCCcEEEEEe--ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceee-EEEeccCCCcceEEEccCCCceEEEE----
Q 015198          121 DHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLL-HQIETLANLRGLCCLSHHSSTSVLAC----  191 (411)
Q Consensus       121 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~----  191 (411)
                      ++++.....+.  .... ++..|+.|..+.+  ..+.+++|++...+.+ +.+  +...+....+++.|....+|+    
T Consensus       112 vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe  188 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPE  188 (566)
T ss_pred             eccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccC
Confidence            99976666665  2222 6899999999888  7899999998663322 222  233345556666554444432    


Q ss_pred             ecCCCCeEEEEEcC--------------------------C---------------------cceEEE----------ec
Q 015198          192 PGLQRGQVRIEHFG--------------------------L---------------------NMIKLI----------NA  214 (411)
Q Consensus       192 ~g~~dg~i~i~~~~--------------------------~---------------------~~~~~~----------~~  214 (411)
                      .++.-+.|+||...                          +                     ..+..+          -.
T Consensus       189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~  268 (566)
T KOG2315|consen  189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL  268 (566)
T ss_pred             CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence            11222233333222                          1                     011111          12


Q ss_pred             cccceeEEEecCCCCEEEE--EcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeC---CCcEEEEE
Q 015198          215 HDSHIACFTLTLDGLLLAT--ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD---KGTVHIFS  289 (411)
Q Consensus       215 ~~~~i~~l~~sp~g~~l~s--~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~I~vwd  289 (411)
                      ..++|.++.|+|+|+.+++  |-.-.. +.|||+ .++.+..+..    ++-+++-|+|.|++|+.++-   .|.|.|||
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnl-r~~~v~df~e----gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAK-VTIFNL-RGKPVFDFPE----GPRNTAFFNPHGNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccce-EEEEcC-CCCEeEeCCC----CCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence            3689999999999986654  556677 999997 6777777654    46688999999999998775   47899999


Q ss_pred             ccccccC
Q 015198          290 LRVRVVG  296 (411)
Q Consensus       290 ~~~~~~~  296 (411)
                      +.+.++.
T Consensus       343 v~n~K~i  349 (566)
T KOG2315|consen  343 VPNRKLI  349 (566)
T ss_pred             ccchhhc
Confidence            9996643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.8e-12  Score=123.74  Aligned_cols=215  Identities=12%  Similarity=0.064  Sum_probs=139.6

Q ss_pred             cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe
Q 015198           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR  145 (411)
Q Consensus        66 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~  145 (411)
                      .|.+||.+.... ..  +..+...+....|+|++..++..+.+.  ....|.+||+.+++......+.+...+..|+||+
T Consensus       185 ~l~i~D~~g~~~-~~--lt~~~~~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        185 ALQVADSDGYNP-QT--ILRSAEPILSPAWSPDGKKLAYVSFER--GRSAIYVQDLATGQRELVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEEECCCCCCc-eE--eecCCCccccccCCCCCCEEEEEecCC--CCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence            477788764322 22  224555678889999987766554320  1257999999888765444455566688999999


Q ss_pred             EEEE----Ec--CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe--EEEEEcCCcceEEEecccc
Q 015198          146 IVVV----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDS  217 (411)
Q Consensus       146 ~~~~----~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~  217 (411)
                      ..++    .+  ..|++||+.+++.. .+..+..  ......+++++..|+++...+|.  |++++........+..+..
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~--~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~  336 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFG--IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN  336 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence            8665    23  36999999887654 3333322  22345667777788776655555  4445554444555544444


Q ss_pred             ceeEEEecCCCCEEEEEcCCC---eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC---CcEEEEEcc
Q 015198          218 HIACFTLTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLR  291 (411)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~I~vwd~~  291 (411)
                      ....++|+|+|++|+..+.++   . |.+||+.+++.. .+..   ........|+|||++|+..+.+   +.|+++++.
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            555789999999988765432   5 999999888764 3332   1234567899999988876653   357777775


Q ss_pred             cc
Q 015198          292 VR  293 (411)
Q Consensus       292 ~~  293 (411)
                      .+
T Consensus       412 g~  413 (433)
T PRK04922        412 GR  413 (433)
T ss_pred             CC
Confidence            43

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=7.9e-13  Score=128.52  Aligned_cols=243  Identities=16%  Similarity=0.192  Sum_probs=163.0

Q ss_pred             CCCCeEEEEEcC--CCCEEEEEe-CCcEEEEecCCCc-c--eEEeec-------CCCCEEEEEEeccC-CeEEEEecCCC
Q 015198           43 DEIELISVSWNQ--DYGCFAAGT-SCGFRIYNCEPFK-E--TFRRDL-------KSGGFRIVEMLFRC-NILALVGAGDN  108 (411)
Q Consensus        43 h~~~V~~l~~s~--~g~~la~g~-dg~i~iw~~~~~~-~--~~~~~~-------~~~~~~~~~~~~~~-~~~~l~s~~~d  108 (411)
                      ....|+.+.+-.  |..++++|+ ||.|+||+--... +  .+....       ......-.-+.|.. .|.++++|+- 
T Consensus      1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~- 1186 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV- 1186 (1387)
T ss_pred             CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe-
Confidence            345688888854  456788888 9999999753221 1  111100       01111113344554 5666666654 


Q ss_pred             CCCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCc---eeeEEEeccCCCcceEE
Q 015198          109 SQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCC  179 (411)
Q Consensus       109 ~~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~  179 (411)
                           ..|+|||....+.+..+.  ....|+++.-+- .|..++   .||.|++||.+..   ..+..++.|...-.++.
T Consensus      1187 -----r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1187 -----RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred             -----eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence                 899999999988888887  355666666443 245554   7999999998653   34566677776533555


Q ss_pred             EccCCCceEEEEecCCCCeEEEEEcCCcce---EEEeccc--c-ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEE
Q 015198          180 LSHHSSTSVLACPGLQRGQVRIEHFGLNMI---KLINAHD--S-HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (411)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~---~~~~~~~--~-~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (411)
                      ++..+.|.-=+++|+.+|.|++|+.+....   ..+..|.  + ..+++..+++...+|+|+. +. |+||++ .|+.+.
T Consensus      1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~-~G~~l~ 1338 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSL-SGEQLN 1338 (1387)
T ss_pred             EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEec-Chhhhc
Confidence            554443322223588999999999887322   2233343  3 5899999999999999998 77 999997 555554


Q ss_pred             EEeCC-----CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          254 EVRRG-----VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       254 ~~~~~-----~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .++..     ...+.+.+++|+|..-+||+|+.|.+|.||....+.
T Consensus      1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            44421     123467999999998899999999999999887654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.52  E-value=1.3e-12  Score=109.75  Aligned_cols=148  Identities=13%  Similarity=0.157  Sum_probs=102.0

Q ss_pred             EEEEcCCeEEEE---E----------cCeEEEEEcC-CceeeEEEeccCCCcceEEEccCCCceEEE-EecCCCCeEEEE
Q 015198          138 SVKLSRDRIVVV---L----------EHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLA-CPGLQRGQVRIE  202 (411)
Q Consensus       138 ~~~~~~~~~~~~---~----------dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~dg~i~i~  202 (411)
                      .+.|+++|..++   .          -+...+|.++ .......+...... .+..++|+|++..+| +.|..++.|.+|
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~-~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEG-PIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCC-ceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            456667666555   1          1234444442 22334444433221 255666666655543 446677899999


Q ss_pred             EcCCcceEEEeccccceeEEEecCCCCEEEEEcC---CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE
Q 015198          203 HFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (411)
Q Consensus       203 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (411)
                      +.+.+.+..+.  ...++.+.|+|+|++|++++.   .|. |.+||+++.+.+.+..   |. .+..++|+|||++|+++
T Consensus        89 d~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~---~~-~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   89 DVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFE---HS-DATDVEWSPDGRYLATA  161 (194)
T ss_pred             cCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccc---cC-cEEEEEEcCCCCEEEEE
Confidence            99877776664  567789999999999998863   477 9999999888877665   33 47899999999999988


Q ss_pred             eC------CCcEEEEEcccc
Q 015198          280 SD------KGTVHIFSLRVR  293 (411)
Q Consensus       280 s~------dg~I~vwd~~~~  293 (411)
                      ..      |+.++||++...
T Consensus       162 ~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  162 TTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EeccceeccccEEEEEecCe
Confidence            74      788999999643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.6e-11  Score=116.66  Aligned_cols=175  Identities=12%  Similarity=0.047  Sum_probs=120.0

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      ..|.+||...........+...+...+|+|||+.++      .+..|++|++.+++...... ...  ......++|++.
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~--~~~~~~~SPDG~  255 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR--HNGAPAFSPDGS  255 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC--CcCCeEECCCCC
Confidence            589999977655544445677899999999998887      13579999998875433222 112  122456677777


Q ss_pred             EEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC-Ce-EEEEEECCCCceEEEEeCCCCCcc
Q 015198          188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-GT-LIRIFNTVDGTRLQEVRRGVDRAE  263 (411)
Q Consensus       188 ~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g~-~I~vwd~~~~~~~~~~~~~~~~~~  263 (411)
                      .|+++...+|  .|++|+........+..+...+....|+|||+.|+..+.+ +. .|+++|+.+++.. .+..  ....
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~  332 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQ  332 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCC
Confidence            8877655555  4777777776666676666678899999999988776654 33 1555677666543 3333  2334


Q ss_pred             eEEEEeCCCCCEEEEEeCC---CcEEEEEccccc
Q 015198          264 IYSIALSPNVQWLAVASDK---GTVHIFSLRVRV  294 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~d---g~I~vwd~~~~~  294 (411)
                      .....|+|||++|+..+.+   ..|.+||+.+++
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~  366 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  366 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            5678999999999876543   358889988775

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=9.3e-12  Score=118.93  Aligned_cols=217  Identities=12%  Similarity=0.015  Sum_probs=142.9

Q ss_pred             cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe
Q 015198           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR  145 (411)
Q Consensus        66 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~  145 (411)
                      .|.++|.+.... ..  +..+...+....|+|++..++..+..  ..+..|.+||+.+++......+.+.+....|+|||
T Consensus       183 ~l~~~d~dg~~~-~~--lt~~~~~v~~p~wSpDG~~lay~s~~--~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        183 RLAIMDQDGANV-RY--LTDGSSLVLTPRFSPNRQEITYMSYA--NGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             EEEEECCCCCCc-EE--EecCCCCeEeeEECCCCCEEEEEEec--CCCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence            566666654322 22  22455678889999998766654321  01278999999888765444467778889999999


Q ss_pred             EEEE----Ec--CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC--eEEEEEcCCcceEEEecccc
Q 015198          146 IVVV----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDS  217 (411)
Q Consensus       146 ~~~~----~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~  217 (411)
                      ..++    .+  ..|++||+.+++.. .+..+..  ......+++++..|+++...+|  .|++++..+.....+..+..
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~  334 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG  334 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCceE-EccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC
Confidence            8765    23  45888898877653 3433332  2234556667777777654444  56667777766666665566


Q ss_pred             ceeEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC------CcEEEE
Q 015198          218 HIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK------GTVHIF  288 (411)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d------g~I~vw  288 (411)
                      .+....|+|+|+.|+....+   .. |.+||+..+.. ..+..   ...+..+.|+|||++|+..+.+      ..++++
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~-i~~~d~~~~~~-~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~  409 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFS-IGVMKPDGSGE-RILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV  409 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceE-EEEEECCCCce-EeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence            67778999999998876543   25 88899865543 34432   2246778999999998765543      257777


Q ss_pred             Ecccccc
Q 015198          289 SLRVRVV  295 (411)
Q Consensus       289 d~~~~~~  295 (411)
                      ++..++.
T Consensus       410 dl~g~~~  416 (435)
T PRK05137        410 DLTGRNE  416 (435)
T ss_pred             ECCCCce
Confidence            8766543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=4e-12  Score=111.11  Aligned_cols=245  Identities=15%  Similarity=0.131  Sum_probs=170.6

Q ss_pred             cCCCCCCeEEEEEcCCCC--EEEEEe-CCcEEEEecCCCcceEEe----ecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           40 SDVDEIELISVSWNQDYG--CFAAGT-SCGFRIYNCEPFKETFRR----DLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~--~la~g~-dg~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      .......|..++|.-+++  .|...+ +..+..+.+.........    ........|..+.......+ .+ -.+    
T Consensus        51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Li-tc-~~s----  124 (412)
T KOG3881|consen   51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLI-TC-VSS----  124 (412)
T ss_pred             ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEE-EE-ecC----
Confidence            445667889999987654  344443 667777766543322221    12234444555544433333 33 333    


Q ss_pred             CCeEEEEECCCCc----EEEEEeecCceeEEEEcCCeEEEE----Ec--CeEEEEEcCCceeeEEEeccC-------CCc
Q 015198          113 PTKVIIWDDHQSR----CIGEFAFRSDVRSVKLSRDRIVVV----LE--HKIYVYSFVDLKLLHQIETLA-------NLR  175 (411)
Q Consensus       113 d~~i~vwd~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~----~d--g~i~iwd~~~~~~~~~~~~~~-------~~~  175 (411)
                       |.+.+|..+.+.    .+..+.....+..+.-++....++    ..  ..+.+||++..+.+..-+...       -++
T Consensus       125 -G~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv  203 (412)
T KOG3881|consen  125 -GNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV  203 (412)
T ss_pred             -CcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence             999999987543    344455566777777777666665    23  568999998875554433221       234


Q ss_pred             ceEEEccCCC--ceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce
Q 015198          176 GLCCLSHHSS--TSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR  251 (411)
Q Consensus       176 ~~~~~~~~~~--~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~  251 (411)
                      +...+.|-+.  ...+|. +..-+.+++|+...  +++..+.--+.+|+++...|+|++|++|..-+. +..||++.++.
T Consensus       204 W~tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl  281 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKL  281 (412)
T ss_pred             eeccceecCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCcee
Confidence            4444444433  444543 56789999987654  678888888999999999999999999999999 99999999998


Q ss_pred             EEE-EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          252 LQE-VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       252 ~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      +.. +.+  -.+.|.+|..+|.+++|++++-|..|+|+|+++.+-
T Consensus       282 ~g~~~kg--~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  282 LGCGLKG--ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             eccccCC--ccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence            776 555  678999999999999999999999999999999553

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.48  E-value=2.5e-12  Score=118.72  Aligned_cols=177  Identities=12%  Similarity=0.112  Sum_probs=128.8

Q ss_pred             CeEEEEECCCCc-----EEEEEeecCceeEEEEcC-C-eEEEE--EcCeEEEEEcCCc-------eeeEEEeccCCCcce
Q 015198          114 TKVIIWDDHQSR-----CIGEFAFRSDVRSVKLSR-D-RIVVV--LEHKIYVYSFVDL-------KLLHQIETLANLRGL  177 (411)
Q Consensus       114 ~~i~vwd~~~~~-----~~~~~~~~~~i~~~~~~~-~-~~~~~--~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~  177 (411)
                      |.|-||++..-.     .+-.+.....|+.+.|+| | .++.+  .||.|++|.+..+       .....+..|...+..
T Consensus       603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~s  682 (1012)
T KOG1445|consen  603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITS  682 (1012)
T ss_pred             ceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEE
Confidence            899999986532     233444678899999998 3 23333  8999999998543       344567778775555


Q ss_pred             EEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce-EEEE
Q 015198          178 CCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEV  255 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~  255 (411)
                      +.|++-.. ..|+ +++.|-+|++|+... +....+.+|.+.|..++|+|+|+.+|+.+.||. |++|+-++++. +++-
T Consensus       683 lRfHPLAa-dvLa-~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv~Eg  759 (1012)
T KOG1445|consen  683 LRFHPLAA-DVLA-VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPVYEG  759 (1012)
T ss_pred             EEecchhh-hHhh-hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCccccC
Confidence            55555432 2333 467899999998765 556678999999999999999999999999999 99999887754 3332


Q ss_pred             eCCCCCcceEEEEeCCCCCEEEEEeCCC----cEEEEEccccc
Q 015198          256 RRGVDRAEIYSIALSPNVQWLAVASDKG----TVHIFSLRVRV  294 (411)
Q Consensus       256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg----~I~vwd~~~~~  294 (411)
                      .+. -...--.|.|--||+++++.+.|.    .|.+||.++-.
T Consensus       760 ~gp-vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  760 KGP-VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             CCC-ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence            221 122345678888999998887764    58888876644

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=3.5e-11  Score=114.97  Aligned_cols=174  Identities=9%  Similarity=0.029  Sum_probs=121.0

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      ..|.++|...........+...+....|+|||+.++      .+..|++||+.+++.. .+.....  ......++|++.
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g--~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG--MTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC--cccCcEECCCCC
Confidence            589999975554443334778999999999998777      2468999999887653 3333333  233455667777


Q ss_pred             EEEEecCCCCe--EEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC-C--CeEEEEEECCCCceEEEEeCCCCCc
Q 015198          188 VLACPGLQRGQ--VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST-R--GTLIRIFNTVDGTRLQEVRRGVDRA  262 (411)
Q Consensus       188 ~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-d--g~~I~vwd~~~~~~~~~~~~~~~~~  262 (411)
                      .|+++.+.++.  |++++..+.....+..+........|+|||+.|+..+. +  .. |+++|+..++.. .+..  +..
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~-~lt~--~~~  334 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPR-RISF--GGG  334 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeE-Eeec--CCC
Confidence            77766656655  55567777777777777777778999999998887664 2  25 888898766543 3433  234


Q ss_pred             ceEEEEeCCCCCEEEEEeCC---CcEEEEEccccc
Q 015198          263 EIYSIALSPNVQWLAVASDK---GTVHIFSLRVRV  294 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~d---g~I~vwd~~~~~  294 (411)
                      .+....|+|||++|+....+   ..|.+||+..+.
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence            56678899999999876653   257788875443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=4.2e-13  Score=121.84  Aligned_cols=209  Identities=11%  Similarity=0.098  Sum_probs=138.9

Q ss_pred             CCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC--CeEEEEecCCCCC
Q 015198           34 HPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQ  110 (411)
Q Consensus        34 ~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~  110 (411)
                      ..+...+.||.+.|+|+.|+.+|.+|++|+ |-.+.|||.-..+...... .+|...|.+..|-|  +..++++|..|  
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgD--  116 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGD--  116 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCc--
Confidence            345567899999999999999999999999 8999999987544444443 37788888888776  56788888877  


Q ss_pred             CCCCeEEEEECCCC----------cEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceee-------EEE
Q 015198          111 YPPTKVIIWDDHQS----------RCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLL-------HQI  168 (411)
Q Consensus       111 ~~d~~i~vwd~~~~----------~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~-------~~~  168 (411)
                         ..|+++|+...          +....+. |...|..++..|++..++    .||+|+-||++....-       ..+
T Consensus       117 ---k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l  193 (758)
T KOG1310|consen  117 ---KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL  193 (758)
T ss_pred             ---ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence               99999998741          1222233 778888888888774333    8999999999753111       000


Q ss_pred             -eccCCCc--ceEEEccCCCceEEEEecCCCCeEEEEEcCC-------------------cceEEE-eccc---------
Q 015198          169 -ETLANLR--GLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-------------------NMIKLI-NAHD---------  216 (411)
Q Consensus       169 -~~~~~~~--~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------------------~~~~~~-~~~~---------  216 (411)
                       .-+..-+  .++.+++.  ..+.++.|+.|-..++++.+.                   .++..+ .+|-         
T Consensus       194 ~ny~~~lielk~ltisp~--rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~  271 (758)
T KOG1310|consen  194 VNYNPQLIELKCLTISPS--RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDR  271 (758)
T ss_pred             HHhchhhheeeeeeecCC--CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccc
Confidence             0111112  34445554  333334477888888877321                   122222 1221         


Q ss_pred             --cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce
Q 015198          217 --SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR  251 (411)
Q Consensus       217 --~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~  251 (411)
                        ..++-++|+|+|..|+..-.... |+++|+..++.
T Consensus       272 ~~~~~t~vtfnpNGtElLvs~~gEh-VYlfdvn~~~~  307 (758)
T KOG1310|consen  272 YITCCTYVTFNPNGTELLVSWGGEH-VYLFDVNEDKS  307 (758)
T ss_pred             ceeeeEEEEECCCCcEEEEeeCCeE-EEEEeecCCCC
Confidence              12556789999987665544445 99999976653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=8.9e-12  Score=118.54  Aligned_cols=196  Identities=15%  Similarity=0.075  Sum_probs=125.5

Q ss_pred             CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCe--EEEEE
Q 015198           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHK--IYVYS  158 (411)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~--i~iwd  158 (411)
                      .+...+....|+|++..++..+.+  .....|.+||+.+++........+.+....|+||+..++    .++.  |+++|
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~--~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFE--SKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEcc--CCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            445567788999998776654432  012579999999887655444566677899999997765    3555  55555


Q ss_pred             cCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc--CCcceEEEeccccceeEEEecCCCCEEEEEcC
Q 015198          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF--GLNMIKLINAHDSHIACFTLTLDGLLLATAST  236 (411)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~  236 (411)
                      +..++ ...+..+..  ......+++++..|++++..+|...||..  .+.....+..+.......+|+|||++|+..+.
T Consensus       271 ~~~~~-~~~lt~~~~--~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        271 ADGSG-LRRLTQSSG--IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             CCCCC-cEECCCCCC--CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence            55444 334433332  22334566777778776655566666544  33344444333344456889999999987665


Q ss_pred             CC---eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC---cEEEEEc
Q 015198          237 RG---TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSL  290 (411)
Q Consensus       237 dg---~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~I~vwd~  290 (411)
                      ++   . |.+||+.+++.. .+...   .......|+|||+.|+.++.++   .+++.++
T Consensus       348 ~~g~~~-I~v~d~~~g~~~-~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        348 VGGAFK-LYVQDLATGQVT-ALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             cCCcEE-EEEEECCCCCeE-EccCC---CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            53   5 999999888754 33321   2346789999999988777554   2455555

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.46  E-value=1e-10  Score=108.10  Aligned_cols=192  Identities=14%  Similarity=0.092  Sum_probs=121.7

Q ss_pred             CCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec
Q 015198           56 YGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR  133 (411)
Q Consensus        56 g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~  133 (411)
                      ++++++..  ++.|.|.|.++.+.+....  .+......+.+++++.++...+.|     +.|.++|+.+++.+.+++..
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~--~~~~~h~~~~~s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~~G   77 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIP--TGGAPHAGLKFSPDGRYLYVANRD-----GTVSVIDLATGKVVATIKVG   77 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE-S
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEc--CCCCceeEEEecCCCCEEEEEcCC-----CeEEEEECCcccEEEEEecC
Confidence            34555444  8999999999866555544  233334556788988666555666     99999999999999999988


Q ss_pred             CceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCC-----cceEEEccCCCceEEEEecCCCCeEEEEEc
Q 015198          134 SDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANL-----RGLCCLSHHSSTSVLACPGLQRGQVRIEHF  204 (411)
Q Consensus       134 ~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~  204 (411)
                      ....++++++||++++    ..+.+.++|.++.+.++.+.....+     ..+.++..++....++++--+.+.|.+-+.
T Consensus        78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen   78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence            8889999999999887    6899999999999999988654321     134445444444544444445577777443


Q ss_pred             CC-cceE-EEeccccceeEEEecCCCCEEEEE-cCCCeEEEEEECCCCceEEEE
Q 015198          205 GL-NMIK-LINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEV  255 (411)
Q Consensus       205 ~~-~~~~-~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~  255 (411)
                      .. +.+. .............|+|++++++.+ ...+. |-++|..+++.+..+
T Consensus       158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVALI  210 (369)
T ss_dssp             TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEEE
T ss_pred             ccccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEEe
Confidence            32 2222 222334556778999999987664 44555 888888876655443

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.46  E-value=6.6e-11  Score=101.41  Aligned_cols=236  Identities=10%  Similarity=0.090  Sum_probs=160.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCCeEEEEE
Q 015198           44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      -+.|..+.|..|..+++++.  ++.|.+|++...+-..+  +..+..++....|+|++ .++.+...+     -.|.||.
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck--Ideg~agls~~~WSPdgrhiL~tseF~-----lriTVWS  120 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK--IDEGQAGLSSISWSPDGRHILLTSEFD-----LRITVWS  120 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE--eccCCCcceeeeECCCcceEeeeecce-----eEEEEEE
Confidence            46788899999998888777  88999999985454443  45888999999999999 455555655     8999999


Q ss_pred             CCCCcEEEEEeecCceeEEEEcCCeEEEE----Ec-----------------------------------CeEEEEEcCC
Q 015198          121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LE-----------------------------------HKIYVYSFVD  161 (411)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d-----------------------------------g~i~iwd~~~  161 (411)
                      +.+.+....--.+..+..++|+|||++.+    .|                                   +.+.+||.--
T Consensus       121 L~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L  200 (447)
T KOG4497|consen  121 LNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL  200 (447)
T ss_pred             eccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh
Confidence            88877655443566678888888887765    11                                   2233333110


Q ss_pred             ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-----EEcCC------------------------------
Q 015198          162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-----EHFGL------------------------------  206 (411)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-----~~~~~------------------------------  206 (411)
                      .-.+..+   ....++...+++|.+++|++ |+.|+.+++     |..-+                              
T Consensus       201 eykv~aY---e~~lG~k~v~wsP~~qflav-GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~c  276 (447)
T KOG4497|consen  201 EYKVYAY---ERGLGLKFVEWSPCNQFLAV-GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHC  276 (447)
T ss_pred             hheeeee---eeccceeEEEeccccceEEe-eccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccc
Confidence            0000111   11124445566666678876 889998887     22111                              


Q ss_pred             --------------------------cceEEEe------ccccceeEEEecCCCCEEEEEcCC--CeEEEEEECCCCceE
Q 015198          207 --------------------------NMIKLIN------AHDSHIACFTLTLDGLLLATASTR--GTLIRIFNTVDGTRL  252 (411)
Q Consensus       207 --------------------------~~~~~~~------~~~~~i~~l~~sp~g~~l~s~s~d--g~~I~vwd~~~~~~~  252 (411)
                                                ..+..++      .....+.-++|++|..++++-...  +. +.+||++..+.-
T Consensus       277 Lsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pna-lW~Wdlq~l~l~  355 (447)
T KOG4497|consen  277 LSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNA-LWLWDLQNLKLH  355 (447)
T ss_pred             cccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCce-EEEEechhhhhh
Confidence                                      0001111      112346678999999999986543  45 999999887765


Q ss_pred             EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      ..+..   ..+|....|.|....|+.+.....+++|......
T Consensus       356 avLiQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~~  394 (447)
T KOG4497|consen  356 AVLIQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR  394 (447)
T ss_pred             hhhhh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence            55553   4479999999999899988888889999876643

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=6.7e-11  Score=102.60  Aligned_cols=247  Identities=15%  Similarity=0.143  Sum_probs=160.0

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEeCCcEEEEecCCCcceEE-----------eecCCCCEEEEEEeccCCeEEEEecCCCC
Q 015198           42 VDEIELISVSWNQD-YGCFAAGTSCGFRIYNCEPFKETFR-----------RDLKSGGFRIVEMLFRCNILALVGAGDNS  109 (411)
Q Consensus        42 ~h~~~V~~l~~s~~-g~~la~g~dg~i~iw~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  109 (411)
                      .....|+|++|-|. ++-|++|..+.|.||..+.-...-+           .--+.++..+..|.|.+++..+++++.+ 
T Consensus       138 ~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g-  216 (445)
T KOG2139|consen  138 VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG-  216 (445)
T ss_pred             hhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccC-
Confidence            34567999999997 5678888899999998763111100           0013566889999999999999988764 


Q ss_pred             CCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCC
Q 015198          110 QYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (411)
                         +..|.|||..++..+.... ..+.+.-+.|+||+.+++   -|+..++|+.....-..........+...++  +|.
T Consensus       217 ---sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacW--spc  291 (445)
T KOG2139|consen  217 ---SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACW--SPC  291 (445)
T ss_pred             ---cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeee--cCC
Confidence               6899999999998877664 678889999999998887   6999999965433222222223333444444  455


Q ss_pred             ceEEEEecCCCCeEEEEEcCCc-----------ceEE---------Eec---cccceeEEEecCCCCEEEEEcCCCe---
Q 015198          186 TSVLACPGLQRGQVRIEHFGLN-----------MIKL---------INA---HDSHIACFTLTLDGLLLATASTRGT---  239 (411)
Q Consensus       186 ~~~l~~~g~~dg~i~i~~~~~~-----------~~~~---------~~~---~~~~i~~l~~sp~g~~l~s~s~dg~---  239 (411)
                      |.+|.++.+..-.++--...++           .+..         ..+   -.+++.+++|.|.|.+||+.-..+.   
T Consensus       292 GsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~  371 (445)
T KOG2139|consen  292 GSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVL  371 (445)
T ss_pred             CCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhh
Confidence            5566555443333332111110           0000         011   2467889999999999998654432   


Q ss_pred             ----EEEEEECCCCceEEEEe-CCCCCcceEEEEeCC---CCCEEEEEeCCCcEEEEEccccc
Q 015198          240 ----LIRIFNTVDGTRLQEVR-RGVDRAEIYSIALSP---NVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       240 ----~I~vwd~~~~~~~~~~~-~~~~~~~v~~l~~sp---dg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                          .|.+||.+..-.+.-.. +........-|+|+|   ++.+|..+-..|.|.-|++.-..
T Consensus       372 ~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f~~  434 (445)
T KOG2139|consen  372 LCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTFQC  434 (445)
T ss_pred             hhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEEEe
Confidence                26678876544332221 111111244566665   67888889899999988886543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.2e-11  Score=108.17  Aligned_cols=241  Identities=12%  Similarity=0.065  Sum_probs=163.5

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ...|...|.|++|+..++.|.+|. +++|.+.|+++.+.+....-......+..+..+|....+++.+.+     +.|.+
T Consensus       101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~-----~~V~~  175 (609)
T KOG4227|consen  101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA-----KLVSF  175 (609)
T ss_pred             cCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC-----ceEEE
Confidence            345668999999999999999999 999999999987666554333444578888888877777777777     99999


Q ss_pred             EECCCCc----EEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCcee-eEEEe---c-cCCCcceEEEccCCC
Q 015198          119 WDDHQSR----CIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKL-LHQIE---T-LANLRGLCCLSHHSS  185 (411)
Q Consensus       119 wd~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~-~~~~~---~-~~~~~~~~~~~~~~~  185 (411)
                      ||.+...    .+..-........+.|+|....++    ..+.+-+||++..+. +....   + ......-+...|++.
T Consensus       176 ~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~  255 (609)
T KOG4227|consen  176 IDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS  255 (609)
T ss_pred             EeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC
Confidence            9977654    333333677888999999765554    567899999864321 11111   1 111112234445555


Q ss_pred             ceEEEEecCCCCeEEE-EEcCCcceEEEec-cc-------cceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-------
Q 015198          186 TSVLACPGLQRGQVRI-EHFGLNMIKLINA-HD-------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-------  249 (411)
Q Consensus       186 ~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~-~~-------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-------  249 (411)
                      |..+.+.  .-+..-+ ++.-.+.+..++. |.       ..+.+++|.-|-. +++|+.+-. |++|.+...       
T Consensus       256 G~Q~msi--RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~-i~~WklP~~~ds~G~~  331 (609)
T KOG4227|consen  256 GNQFMSI--RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWG-IHIWKLPRANDSYGFT  331 (609)
T ss_pred             CCeehhh--hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccc-eEEEecCCCccccCcc
Confidence            5555432  3333333 4444433333332 22       2466777765544 899999988 999987531       


Q ss_pred             ----------------ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          250 ----------------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       250 ----------------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                                      +.+..+++  |...++.+.|+|...+|++.+-.+.++||.-.
T Consensus       332 ~IG~~~~~~~~~~~i~~~~~VLrG--HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  332 QIGHDEEEMPSEIFIEKELTVLRG--HRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ccCcchhhCchhheecceeEEEec--ccccccceeecCCcceEeccchhhheeccccc
Confidence                            12345666  88899999999999999999999999999643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.43  E-value=6.4e-11  Score=109.48  Aligned_cols=238  Identities=11%  Similarity=0.069  Sum_probs=142.5

Q ss_pred             eEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        47 V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      -..+.|+|||+++++.+ ||.|.++|+.+.+.+....   -......+.+++++.+++.+...    ++.+.++|.++.+
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle  111 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLE  111 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cCCCcceEEEcCCCCEEEEEecC----CCceeEecccccc
Confidence            34578999999999989 9999999999877555543   23346678888888766655432    3999999999999


Q ss_pred             EEEEEee--------cCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceee--EEEeccCCCcceEEEccCCCceEEEE
Q 015198          126 CIGEFAF--------RSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLL--HQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       126 ~~~~~~~--------~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      .++.+..        ...+.++..++.+. +++   ..+.|.+.|..+.+.+  ..+....   ......+++++++++.
T Consensus       112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~---~~~D~~~dpdgry~~v  188 (369)
T PF02239_consen  112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR---FPHDGGFDPDGRYFLV  188 (369)
T ss_dssp             EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T---TEEEEEE-TTSSEEEE
T ss_pred             ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc---cccccccCcccceeee
Confidence            9998862        23567787777766 444   3488888887665433  2333222   2334555566665544


Q ss_pred             ecCCCCeEEEEEcCC--------------------------------------------------------cceEEEecc
Q 015198          192 PGLQRGQVRIEHFGL--------------------------------------------------------NMIKLINAH  215 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~--------------------------------------------------------~~~~~~~~~  215 (411)
                      +...+..|.+.+...                                                        +.++.+...
T Consensus       189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~  268 (369)
T PF02239_consen  189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ  268 (369)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred             cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence            333333444332221                                                        122333333


Q ss_pred             ccceeEEEecCCCCEEEEE----cCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC--cEEEEE
Q 015198          216 DSHIACFTLTLDGLLLATA----STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG--TVHIFS  289 (411)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~----s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~I~vwd  289 (411)
                      ..+ .-+..+|+++++.+.    ...+. |.++|.++.+.+.++... ....+..+.|++||+.+..+..++  .|.|||
T Consensus       269 G~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~-~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  269 GGG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPG-PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             SSS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHH-HT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred             CCc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEecc-CCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence            333 456679999999987    34466 999999999887777532 112489999999999776554433  699999


Q ss_pred             ccccccCC
Q 015198          290 LRVRVVGE  297 (411)
Q Consensus       290 ~~~~~~~~  297 (411)
                      ..+.+...
T Consensus       346 ~~Tl~~~~  353 (369)
T PF02239_consen  346 AKTLKEKK  353 (369)
T ss_dssp             TTTTEEEE
T ss_pred             CCCcEEEE
Confidence            99998764

...

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=2.7e-12  Score=117.09  Aligned_cols=212  Identities=14%  Similarity=0.139  Sum_probs=146.9

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc--------ceEEeecCCCCEEEEEEeccCCeEEEEecCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK--------ETFRRDLKSGGFRIVEMLFRCNILALVGAGDN  108 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  108 (411)
                      -...+|.++|.|+++.++++.+.+|+ ||+|+.|++....        ..+...+.+|...+..+.++.....|++++.|
T Consensus       338 ~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D  417 (577)
T KOG0642|consen  338 LTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD  417 (577)
T ss_pred             EEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCC
Confidence            45789999999999999999999999 9999999764211        12333455888888899999988889999988


Q ss_pred             CCCCCCeEEEEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE-EcCeEEEEEc---CCceeeEEEeccCC--C---cc
Q 015198          109 SQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV-LEHKIYVYSF---VDLKLLHQIETLAN--L---RG  176 (411)
Q Consensus       109 ~~~~d~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~-~dg~i~iwd~---~~~~~~~~~~~~~~--~---~~  176 (411)
                           |++++|+...... .++.   ..+.-.++.+-....... .+.....+++   .....+..+.....  +   ..
T Consensus       418 -----gTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~  491 (577)
T KOG0642|consen  418 -----GTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ  491 (577)
T ss_pred             -----ceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence                 9999999766655 3443   222333444433332222 3444444444   33333333322111  1   12


Q ss_pred             eEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE
Q 015198          177 LCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (411)
                      +..+..++...+. +++..|+.|++ +...+..+.....|...++++++.|+|-+|++++.|+. +++|.+....++...
T Consensus       492 in~vVs~~~~~~~-~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~es  569 (577)
T KOG0642|consen  492 INKVVSHPTADIT-FTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLES  569 (577)
T ss_pred             cceEEecCCCCee-EecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeecc
Confidence            2233334444444 45679999999 66778888999999999999999999999999999999 999998776666555


Q ss_pred             eC
Q 015198          256 RR  257 (411)
Q Consensus       256 ~~  257 (411)
                      ..
T Consensus       570 ~~  571 (577)
T KOG0642|consen  570 TA  571 (577)
T ss_pred             cc
Confidence            44

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.41  E-value=4.3e-11  Score=100.58  Aligned_cols=114  Identities=15%  Similarity=0.172  Sum_probs=77.9

Q ss_pred             eEEEccCCCceEEEEecC---------CCCeEEE--EEcCCcceEEEec-cccceeEEEecCCCCEEEE--EcCCCeEEE
Q 015198          177 LCCLSHHSSTSVLACPGL---------QRGQVRI--EHFGLNMIKLINA-HDSHIACFTLTLDGLLLAT--ASTRGTLIR  242 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~---------~dg~i~i--~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s--~s~dg~~I~  242 (411)
                      .+.+.|+++|.+|++...         .-+...|  .+........+.. ..++|.+++|+|+|+.||+  |..+.. |.
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~   86 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VT   86 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cE
Confidence            455666666666654332         1123333  2233444555543 3457999999999998654  445677 99


Q ss_pred             EEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC---CcEEEEEccccccC
Q 015198          243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLRVRVVG  296 (411)
Q Consensus       243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~I~vwd~~~~~~~  296 (411)
                      +||++ ++.+..+..    ..+..+.|+|+|++|++++.+   |.|.+||+++.+..
T Consensus        87 lyd~~-~~~i~~~~~----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i  138 (194)
T PF08662_consen   87 LYDVK-GKKIFSFGT----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI  138 (194)
T ss_pred             EEcCc-ccEeEeecC----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence            99995 777766653    367889999999999998754   66999999976654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=4.6e-12  Score=115.21  Aligned_cols=208  Identities=14%  Similarity=0.151  Sum_probs=146.2

Q ss_pred             eecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcCC--eEEEE---EcCe
Q 015198           81 RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRD--RIVVV---LEHK  153 (411)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~--~~~~~---~dg~  153 (411)
                      .++.+|...+.++.|+.+|.+|++|++|     -.+.|||....+.+..+.  |...|.++.|-|.  ..+++   .|..
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD-----~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDD-----TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCc-----ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            3456889999999999999999999998     999999999999999887  8999999999883  34444   7999


Q ss_pred             EEEEEcCCc----------eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc--ceE---------EE
Q 015198          154 IYVYSFVDL----------KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIK---------LI  212 (411)
Q Consensus       154 i~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~~---------~~  212 (411)
                      |++||+...          +....+..|...+.-+  +..+.+...+.++++||+|+-++.+..  +..         .+
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKri--a~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny  196 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRI--ATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY  196 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhhhhhhe--ecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence            999999641          2333445555544444  444444445556779999999776541  111         11


Q ss_pred             eccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCC--------Cc----------eEEEEeCCCC----------Ccc
Q 015198          213 NAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVD--------GT----------RLQEVRRGVD----------RAE  263 (411)
Q Consensus       213 ~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~--------~~----------~~~~~~~~~~----------~~~  263 (411)
                      ...--...++.++|.. .+|++|+.|-. .++||.+.        +.          ++..+..++-          ...
T Consensus       197 ~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~  275 (758)
T KOG1310|consen  197 NPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITC  275 (758)
T ss_pred             chhhheeeeeeecCCCCceEEecCCCch-hhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceee
Confidence            1222356788999865 48899999999 99999431        11          2222222111          012


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      ++-+.|+|+|.-|++.-....|+++|+..++..
T Consensus       276 ~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  276 CTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             eEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            567899999987776666667999999988754

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.39  E-value=1.7e-10  Score=110.00  Aligned_cols=174  Identities=15%  Similarity=0.105  Sum_probs=119.6

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---E---cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      ..|.++|...+.......+...+....|+||++.++   .   ...|++||+.+++..... .....  .....+++++.
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~--~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGM--NGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCC--ccceEECCCCC
Confidence            578899976554444444666788999999999887   1   257999999887654332 22222  23345566676


Q ss_pred             EEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCC---eEEEEEECCCCceEEEEeCCCCCc
Q 015198          188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRGVDRA  262 (411)
Q Consensus       188 ~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~~~~~  262 (411)
                      .|+++.+.++  .|++++........+..+........|+|+|+.|+..+..+   . |+++|+.+++.. .+..  +..
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~-~l~~--~~~  322 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVR-RLTF--RGG  322 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEE-Eeec--CCC
Confidence            6766554444  46667777666666666665566789999999887665432   5 888898777653 3333  334


Q ss_pred             ceEEEEeCCCCCEEEEEeCCC---cEEEEEccccc
Q 015198          263 EIYSIALSPNVQWLAVASDKG---TVHIFSLRVRV  294 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~  294 (411)
                      .+..+.|+|+|++|+.++.++   .|.+||+.++.
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            567889999999999888775   78888887754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=2.8e-09  Score=93.09  Aligned_cols=253  Identities=14%  Similarity=0.111  Sum_probs=167.8

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe----CCcEEEEecCCC--cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT----SCGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~----dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      .+.-.+.+.++-|+|+|++++|.++.    +|.|.-|.++..  ...+.............++.++++.+++++..    
T Consensus        33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY----  108 (346)
T COG2706          33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY----  108 (346)
T ss_pred             hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEc----
Confidence            34567788899999999999998876    578888888863  22222111112222256677788877776543    


Q ss_pred             CCCeEEEEECCC-Cc---EEEEEeecCc----------eeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEecc-C
Q 015198          112 PPTKVIIWDDHQ-SR---CIGEFAFRSD----------VRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETL-A  172 (411)
Q Consensus       112 ~d~~i~vwd~~~-~~---~~~~~~~~~~----------i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~-~  172 (411)
                      ..+.|.++-+.. |.   .+..+.|.+.          +....+.|++++++    .-..|.+|++..|++...-... .
T Consensus       109 ~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~  188 (346)
T COG2706         109 HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK  188 (346)
T ss_pred             cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC
Confidence            459999999865 43   2344456555          88889999998888    4578999999877654322111 1


Q ss_pred             CCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEecc---------ccceeEEEecCCCCEEEEEcCCCeEE
Q 015198          173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAH---------DSHIACFTLTLDGLLLATASTRGTLI  241 (411)
Q Consensus       173 ~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~---------~~~i~~l~~sp~g~~l~s~s~dg~~I  241 (411)
                      .......+.++|++++..+..--+++|.+|..+.  ..+..++.+         ......|.+++||++|.++..--..|
T Consensus       189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI  268 (346)
T COG2706         189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI  268 (346)
T ss_pred             CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            1224455666677777766677899999987765  333333322         34567889999999999876543348


Q ss_pred             EEEECCCC-ceEEEEe-CCCCCcceEEEEeCCCCCEEEEEeCCC-cEEEEEccccc
Q 015198          242 RIFNTVDG-TRLQEVR-RGVDRAEIYSIALSPNVQWLAVASDKG-TVHIFSLRVRV  294 (411)
Q Consensus       242 ~vwd~~~~-~~~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg-~I~vwd~~~~~  294 (411)
                      .+|.+... ..+..+. ...+......+.|++.|++|+++..++ .|.+|.++...
T Consensus       269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            88876533 2222222 111333578999999999999888765 69999887544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.36  E-value=1.2e-10  Score=99.46  Aligned_cols=159  Identities=13%  Similarity=0.157  Sum_probs=124.9

Q ss_pred             ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc---eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc-
Q 015198          132 FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-  204 (411)
Q Consensus       132 ~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-  204 (411)
                      ...+|++.+|++|+..++   ....|.||.....   +..+++..|...+..+++++.  ...|+ +++.|..-++|.. 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~--snrIv-tcs~drnayVw~~~   85 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK--SNRIV-TCSHDRNAYVWTQP   85 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC--CCcee-EccCCCCccccccC
Confidence            578999999999999888   5678999987543   567888888886666555554  44455 4779999999987 


Q ss_pred             CC---cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE---EEEeCCCCCcceEEEEeCCCCCEEEE
Q 015198          205 GL---NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL---QEVRRGVDRAEIYSIALSPNVQWLAV  278 (411)
Q Consensus       205 ~~---~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~---~~~~~~~~~~~v~~l~~spdg~~l~s  278 (411)
                      .+   ++...+..++...+++.|+|.++.+|+|+.-.. |.||-++...--   +.++ ..++..|++++|+|++-+|++
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~-isVcy~E~ENdWWVsKhik-kPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL-ISVCYYEQENDWWVSKHIK-KPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccE-EEEEEEecccceehhhhhC-CccccceeeeeccCCcceecc
Confidence            33   456677789999999999999999999999988 999977543321   1122 226678999999999999999


Q ss_pred             EeCCCcEEEEEcccccc
Q 015198          279 ASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       279 ~s~dg~I~vwd~~~~~~  295 (411)
                      |+.|+..+||..--+..
T Consensus       164 Gs~D~k~rVfSayIK~V  180 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGV  180 (361)
T ss_pred             cccCcceeEEEEeeecc
Confidence            99999999998766543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.36  E-value=1.4e-10  Score=115.01  Aligned_cols=212  Identities=10%  Similarity=0.096  Sum_probs=144.7

Q ss_pred             ceEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEEEEECCC-------CcEEEEEe-ecCceeEEEEcCCeEE
Q 015198           77 ETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQ-------SRCIGEFA-FRSDVRSVKLSRDRIV  147 (411)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~vwd~~~-------~~~~~~~~-~~~~i~~~~~~~~~~~  147 (411)
                      ..+..+++.|...+..++.++. +.++++|+.|     |+|++||...       .+...++. ....+.++...+.+..
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~D-----GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDD-----GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCC-----ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            3455567788888888776654 4899999998     9999999643       12333444 5778888888887776


Q ss_pred             EE---EcCeEEEEEcCCc--e-----eeEEEeccCCCcce--EEEccCCCceEEEEecCCCCeEEEEEcCCcce---EEE
Q 015198          148 VV---LEHKIYVYSFVDL--K-----LLHQIETLANLRGL--CCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI---KLI  212 (411)
Q Consensus       148 ~~---~dg~i~iwd~~~~--~-----~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~---~~~  212 (411)
                      ++   .||.|++.+++..  +     +.+....+.....+  .++........+++ +...+.|..|+......   ...
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhc
Confidence            66   7999999998652  1     11222222222211  12222223324444 44666777787765332   222


Q ss_pred             eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCC---CEEEEEe--CCCcEEE
Q 015198          213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV---QWLAVAS--DKGTVHI  287 (411)
Q Consensus       213 ~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg---~~l~s~s--~dg~I~v  287 (411)
                      ....+.|++++.+|.+.++++|+..|. +.+||++-+.++..+.-. +..+|..+..+|-.   ...++++  ..+.|.+
T Consensus      1192 ~~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             CccccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence            345688999999999999999999999 999999999998888755 44688888877643   3555444  4678999


Q ss_pred             EEccccccC
Q 015198          288 FSLRVRVVG  296 (411)
Q Consensus       288 wd~~~~~~~  296 (411)
                      |++.+|.+.
T Consensus      1270 wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1270 WNMETGLRQ 1278 (1431)
T ss_pred             eecccCcce
Confidence            999999654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.35  E-value=2.6e-09  Score=98.85  Aligned_cols=241  Identities=19%  Similarity=0.165  Sum_probs=150.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-C----CcEEEEecCCC--cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           44 EIELISVSWNQDYGCFAAGT-S----CGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~-d----g~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ......++++|++++|.+.. .    +.|..|.++..  .................+..++++.+++.+..    ..+.|
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany----~~g~v  111 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY----GGGSV  111 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET----TTTEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc----cCCeE
Confidence            34456788999999999887 3    57888888764  22122222123334455667777665555432    23999


Q ss_pred             EEEECCC-CcEEEE---Eee-----------cCceeEEEEcCCeEEEE----EcCeEEEEEcCCce--e--eEEEeccCC
Q 015198          117 IIWDDHQ-SRCIGE---FAF-----------RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK--L--LHQIETLAN  173 (411)
Q Consensus       117 ~vwd~~~-~~~~~~---~~~-----------~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~--~--~~~~~~~~~  173 (411)
                      .++++.. +.....   +.+           .....++.++|++++++    ....|++|++....  +  ...+.... 
T Consensus       112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~-  190 (345)
T PF10282_consen  112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP-  190 (345)
T ss_dssp             EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST-
T ss_pred             EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc-
Confidence            9999877 433322   222           24567899999988776    35789999996644  3  22333222 


Q ss_pred             CcceEEEccCCCceEEEEecCCCCeEEEEEcC--Cc---ceEEEecc------ccceeEEEecCCCCEEEEEcCCCeEEE
Q 015198          174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LN---MIKLINAH------DSHIACFTLTLDGLLLATASTRGTLIR  242 (411)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~---~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~dg~~I~  242 (411)
                      ......+.++++++++.+....++.|.++...  ..   .+..+...      ......|+++|||++|+++......|.
T Consensus       191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~  270 (345)
T PF10282_consen  191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS  270 (345)
T ss_dssp             TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred             CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence            23455666777777777777788899986555  22   22222211      125678999999999887765443499


Q ss_pred             EEECC--CCce--EEEEeCCCCCcceEEEEeCCCCCEEEEEe-CCCcEEEEEcc
Q 015198          243 IFNTV--DGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLR  291 (411)
Q Consensus       243 vwd~~--~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~  291 (411)
                      +|++.  ++++  +..+..  .....+.++++|+|++|+++. .++.|.+|+++
T Consensus       271 vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  271 VFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            99983  3443  333333  233579999999999999877 45689999885

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=1.2e-10  Score=100.43  Aligned_cols=244  Identities=11%  Similarity=0.197  Sum_probs=152.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc---eEEeecCCCC------------EEEEEEeccCC--e-EEEE
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE---TFRRDLKSGG------------FRIVEMLFRCN--I-LALV  103 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~---~~~~~~~~~~------------~~~~~~~~~~~--~-~~l~  103 (411)
                      ..+-|.++.|...|.+||+|. +|.|.+|.-+....   .+...++.|.            ..+..+.|.++  . .+++
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            346789999999999999999 99999997654332   1112221221            12334455543  3 3444


Q ss_pred             ecCCCCCCCCCeEEEEECCCCc-----------------------------------EEEEEe--ecCceeEEEEcCCeE
Q 015198          104 GAGDNSQYPPTKVIIWDDHQSR-----------------------------------CIGEFA--FRSDVRSVKLSRDRI  146 (411)
Q Consensus       104 s~~~d~~~~d~~i~vwd~~~~~-----------------------------------~~~~~~--~~~~i~~~~~~~~~~  146 (411)
                      ++. |     .+|++|.+....                                   +.+.+.  |.-.|+++.++.|..
T Consensus       104 stN-d-----ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E  177 (433)
T KOG1354|consen  104 STN-D-----KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE  177 (433)
T ss_pred             ecC-C-----cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence            443 3     999999864321                                   111222  556789999999988


Q ss_pred             EEE--EcCeEEEEEcCCc-eeeEEEeccC-------CCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-----ceEE
Q 015198          147 VVV--LEHKIYVYSFVDL-KLLHQIETLA-------NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-----MIKL  211 (411)
Q Consensus       147 ~~~--~dg~i~iwd~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-----~~~~  211 (411)
                      .+.  .|=.|.+|+++-- +.........       ..++...|+|...+ ++++ .+..|+|++-+.+..     ..+.
T Consensus       178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-~f~Y-SSSKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-VFVY-SSSKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-EEEE-ecCCCcEEEeechhhhhhcchhhh
Confidence            777  6788999998532 2222222211       12333445554433 4455 347899999554421     1111


Q ss_pred             Ee------------ccccceeEEEecCCCCEEEEEcCCCeEEEEEECC-CCceEEEEeCCCC----------Ccc---eE
Q 015198          212 IN------------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVD----------RAE---IY  265 (411)
Q Consensus       212 ~~------------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~----------~~~---v~  265 (411)
                      +.            .--..|..+.|+++|+++++-+. -+ |++||+. ..+++.++..+..          ...   -.
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF  333 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF  333 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence            11            12346888999999999997654 34 9999994 4455555544211          112   24


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      .++|+.++.++++|+..+.+++|++..|.+.
T Consensus       334 ec~~sg~~~~v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  334 ECSWSGNDSYVMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             EEEEcCCcceEecccccceEEEecCCCCcce
Confidence            5789999999999999999999998877654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.35  E-value=4.2e-11  Score=108.82  Aligned_cols=216  Identities=12%  Similarity=0.141  Sum_probs=132.9

Q ss_pred             CCEEEEEe-CCcEEEEecCCCc--ceEEeecCCCCEEEEEEeccC--CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEE
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF  130 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~  130 (411)
                      +--|.+|- .|.|.+.+....+  +++..........+.++.|-+  +..++++-..      |.+.++|.+       +
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~s------Gnlyly~~~-------~  251 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHAS------GNLYLYDKE-------I  251 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEec------CceEEeecc-------c
Confidence            44455666 7777777654311  111111112234555555554  5566665333      899999851       1


Q ss_pred             eecCceeEEEEcCCeEEEEEcCeEEEEEc-CCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc-
Q 015198          131 AFRSDVRSVKLSRDRIVVVLEHKIYVYSF-VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-  208 (411)
Q Consensus       131 ~~~~~i~~~~~~~~~~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-  208 (411)
                      .....-.+....+++..+.    |..|.- .+..++..+.....  .+..+++++|+++||+.+ .||.++|++..... 
T Consensus       252 ~~~~t~p~~~~~k~~~~f~----i~t~ksk~~rNPv~~w~~~~g--~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eL  324 (636)
T KOG2394|consen  252 VCGATAPSYQALKDGDQFA----ILTSKSKKTRNPVARWHIGEG--SINEFAFSPDGKYLATVS-QDGFLRIFDFDTQEL  324 (636)
T ss_pred             cccCCCCcccccCCCCeeE----EeeeeccccCCccceeEeccc--cccceeEcCCCceEEEEe-cCceEEEeeccHHHH
Confidence            1111111111122222222    111110 11133333333333  345566667889999864 99999998877644 


Q ss_pred             eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC-----------------
Q 015198          209 IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-----------------  271 (411)
Q Consensus       209 ~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-----------------  271 (411)
                      +-.++..-+...|++|+|||++|++|++|.- |.||.+...+.+..-.+  |+..|..++|.|                 
T Consensus       325 lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-VtVwSf~erRVVARGqG--HkSWVs~VaFDpytt~~ee~~~~~~~~~~  401 (636)
T KOG2394|consen  325 LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-VTVWSFEERRVVARGQG--HKSWVSVVAFDPYTTSTEEWNNFSGMDST  401 (636)
T ss_pred             HHHHHhhccceEEEEEcCCccEEEecCCcce-EEEEEeccceEEEeccc--cccceeeEeeccccccccccccccccccc
Confidence            3445566788999999999999999999999 99999999988877666  999999999983                 


Q ss_pred             ------------------CC-------------CEEEEEeCCCcEEEEEccccc
Q 015198          272 ------------------NV-------------QWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       272 ------------------dg-------------~~l~s~s~dg~I~vwd~~~~~  294 (411)
                                        ++             ..|.+.+.|-.+.+||+....
T Consensus       402 ~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  402 FSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             ccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence                              01             246678889999999997654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=6.2e-10  Score=105.59  Aligned_cols=201  Identities=11%  Similarity=0.050  Sum_probs=127.6

Q ss_pred             CCCEEEEEEeccCCeEE--E--EecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E--cC--eE
Q 015198           85 SGGFRIVEMLFRCNILA--L--VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L--EH--KI  154 (411)
Q Consensus        85 ~~~~~~~~~~~~~~~~~--l--~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~--dg--~i  154 (411)
                      ..........|+|++..  +  ++. .+   ....|.+.++..++........+......|+|||+.++  .  +|  .+
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~-~~---g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di  257 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSY-KL---GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDL  257 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEc-cC---CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence            33444567789999642  3  332 21   12578888998887655555666677789999998777  3  22  34


Q ss_pred             --EEEEcCCc---eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc--C--CcceEEEeccccceeEEEec
Q 015198          155 --YVYSFVDL---KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF--G--LNMIKLINAHDSHIACFTLT  225 (411)
Q Consensus       155 --~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~--~~~~~~~~~~~~~i~~l~~s  225 (411)
                        ..|++..+   +..+.......  ......++|++..|+++...+|...||..  .  +.....+..+...+....|+
T Consensus       258 ~~~~~~~~~g~~g~~~~lt~~~~~--~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS  335 (428)
T PRK01029        258 FIQSFSLETGAIGKPRRLLNEAFG--TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS  335 (428)
T ss_pred             eEEEeecccCCCCcceEeecCCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence              44676542   32222222211  12345667778888876656676555443  2  23345555555677889999


Q ss_pred             CCCCEEEEEcCC---CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeC---CCcEEEEEcccccc
Q 015198          226 LDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD---KGTVHIFSLRVRVV  295 (411)
Q Consensus       226 p~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~I~vwd~~~~~~  295 (411)
                      |||+.|+..+.+   .. |.+||+.+++.. .+..  ....+....|+|||++|+....   ...|++||+..++.
T Consensus       336 PDG~~Laf~~~~~g~~~-I~v~dl~~g~~~-~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQ-ICVYDLATGRDY-QLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             CCCCEEEEEEcCCCCcE-EEEEECCCCCeE-EccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            999988876543   35 999999888764 3332  2235677899999998875443   34688889887654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.33  E-value=4.7e-10  Score=107.07  Aligned_cols=213  Identities=14%  Similarity=0.100  Sum_probs=136.8

Q ss_pred             cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe
Q 015198           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR  145 (411)
Q Consensus        66 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~  145 (411)
                      .|.++|.+.... ..  +..+...+....|+|++..++....+.  ....|++||+.+++......+...+.++.|+||+
T Consensus       171 ~l~~~d~~g~~~-~~--l~~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg  245 (417)
T TIGR02800       171 ELQVADYDGANP-QT--ITRSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG  245 (417)
T ss_pred             eEEEEcCCCCCC-EE--eecCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence            466666653222 11  213444567788999987776544320  1258999999988765555566677789999999


Q ss_pred             EEEE----E--cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC--eEEEEEcCCcceEEEecccc
Q 015198          146 IVVV----L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDS  217 (411)
Q Consensus       146 ~~~~----~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~  217 (411)
                      ..++    .  +..|++||+.+++... +..+....  ....+++++..|+++....+  .|++++..+.....+..+..
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~--~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~  322 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGID--TEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG  322 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCC--CCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence            7665    2  3469999998765433 32222212  22344567777776554444  46666666655666666667


Q ss_pred             ceeEEEecCCCCEEEEEcCCC---eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC---cEEEEEcc
Q 015198          218 HIACFTLTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSLR  291 (411)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~I~vwd~~  291 (411)
                      .+..+.|+|+|++|+.++.++   . |.+||+.++... .+...   .......|+|||++|+..+.++   .+++.+..
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            778889999999998887765   6 899999876543 33321   1234568999999988877655   34555533

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=5.6e-10  Score=102.24  Aligned_cols=236  Identities=12%  Similarity=0.111  Sum_probs=156.9

Q ss_pred             EEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEE
Q 015198           48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI  127 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~  127 (411)
                      +++.|+.|..+.|--..+.+.+|+....+.... .++...+....+...|.-..++.---..+-....|+||.......-
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~  207 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH  207 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence            688999998776655588999999987554333 3433333333333333333333221111123478999986533222


Q ss_pred             EEEe----ecCceeEEEEcCCeEEEE---------------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198          128 GEFA----FRSDVRSVKLSRDRIVVV---------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       128 ~~~~----~~~~i~~~~~~~~~~~~~---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                      ..+.    +...=..+.|++-+.-+.               ...++++++++...+...+ ...+++..+.|++++.. +
T Consensus       208 ~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~E-F  285 (566)
T KOG2315|consen  208 QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGRE-F  285 (566)
T ss_pred             chhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCE-E
Confidence            2221    344455677887654332               2357888888743444333 33567777777777653 4


Q ss_pred             EEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC---CCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                      -++-|..-..+.|++.++..+..+.  .++=+++-|+|.|++|+.++-   .|. |.|||+.+.+++..+...    .-+
T Consensus       286 ~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a~----~tt  358 (566)
T KOG2315|consen  286 AVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKAA----NTT  358 (566)
T ss_pred             EEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhccccccC----Cce
Confidence            4445888889999988888877653  566778999999999888764   477 999999998888887762    345


Q ss_pred             EEEeCCCCCEEEEEeC------CCcEEEEEcccc
Q 015198          266 SIALSPNVQWLAVASD------KGTVHIFSLRVR  293 (411)
Q Consensus       266 ~l~~spdg~~l~s~s~------dg~I~vwd~~~~  293 (411)
                      -+.|+|||+++++++.      |+.++||+....
T Consensus       359 ~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  359 VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            6799999999998875      678999998654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.32  E-value=3.7e-09  Score=90.50  Aligned_cols=214  Identities=13%  Similarity=0.176  Sum_probs=143.3

Q ss_pred             CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC-CCcEEEEEe---ecCceeEEE
Q 015198           65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH-QSRCIGEFA---FRSDVRSVK  140 (411)
Q Consensus        65 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~-~~~~~~~~~---~~~~i~~~~  140 (411)
                      +.|.|||=.....+...   .-...|.++...++..+++..        +.|.||... +-+.++.+.   .+..+.+++
T Consensus        75 NkviIWDD~k~~~i~el---~f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~n~k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIEL---SFNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPDNPKLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             ceEEEEecccCcEEEEE---EeccceeeEEEcCCeEEEEec--------CeEEEEEcCCChhheeeeecccCCCceEeec
Confidence            46899994433333333   345567788888888777763        899999976 446666665   344555555


Q ss_pred             EcCCeEEEE----EcCeEEEEEcCCcee--eEEEeccCCCcceEEEccCCCceEEEEecCCCCe-EEEEE-cCCcceEEE
Q 015198          141 LSRDRIVVV----LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ-VRIEH-FGLNMIKLI  212 (411)
Q Consensus       141 ~~~~~~~~~----~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~-i~i~~-~~~~~~~~~  212 (411)
                      -..+..+++    .-|.|.|-|+...+.  ...+..|...+.++++..  +|..+|+ ++..|+ |+||+ .++..+..+
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~--~Gt~vAT-aStkGTLIRIFdt~~g~~l~E~  220 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL--QGTLVAT-ASTKGTLIRIFDTEDGTLLQEL  220 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC--CccEEEE-eccCcEEEEEEEcCCCcEeeee
Confidence            555666666    579999999976554  467888988666655554  5567765 556666 67765 556777777


Q ss_pred             ec--cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE-----------EeC-----------CCCCcceEEEE
Q 015198          213 NA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE-----------VRR-----------GVDRAEIYSIA  268 (411)
Q Consensus       213 ~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~-----------~~~-----------~~~~~~v~~l~  268 (411)
                      ..  ....|.+|+|||++.+||++|+.|+ ++||.++....-..           +..           +...+...-++
T Consensus       221 RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~  299 (346)
T KOG2111|consen  221 RRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIA  299 (346)
T ss_pred             ecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEE
Confidence            53  3578999999999999999999999 99998865321111           100           00223445567


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      |-.+.+.++..+.||.-+=+.+...
T Consensus       300 fg~~~nsvi~i~~Dgsy~k~~f~~~  324 (346)
T KOG2111|consen  300 FGSETNTVIAICADGSYYKFKFDPK  324 (346)
T ss_pred             ecCCCCeEEEEEeCCcEEEEEeccc
Confidence            7666566777777887665555433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=2.5e-10  Score=99.14  Aligned_cols=153  Identities=16%  Similarity=0.188  Sum_probs=106.3

Q ss_pred             cCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEec-cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc
Q 015198          133 RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM  208 (411)
Q Consensus       133 ~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~  208 (411)
                      ...+..++|++.-..++   .|..|++||-.. +....++. .+..+.++++.|.... .|++ |. .+-|.+|..+...
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas-elav-gC-r~gIciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS-ELAV-GC-RAGICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc-eeee-ee-cceeEEEEcCccc
Confidence            45677788888544333   799999999765 44444433 2333455566665443 3444 43 3457777654311


Q ss_pred             ---------------eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCC
Q 015198          209 ---------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (411)
Q Consensus       209 ---------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (411)
                                     +..-.+| .+|++++|++||..|++++.+...|.|||..++..+.....  ..+.+.-+.|||||
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwSPdg  250 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWSPDG  250 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEcCCC
Confidence                           1111233 68999999999999999987766699999999887654433  45578999999999


Q ss_pred             CEEEEEeCCCcEEEEEccc
Q 015198          274 QWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       274 ~~l~s~s~dg~I~vwd~~~  292 (411)
                      .+|.+++-|+..++|+...
T Consensus       251 d~lfaAt~davfrlw~e~q  269 (445)
T KOG2139|consen  251 DVLFAATCDAVFRLWQENQ  269 (445)
T ss_pred             CEEEEecccceeeeehhcc
Confidence            9999999999999996544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.31  E-value=1.1e-08  Score=92.70  Aligned_cols=236  Identities=13%  Similarity=0.037  Sum_probs=151.5

Q ss_pred             EcCCCCEEEEEe-----------CCcEEEEecCCCcceEEeecCCC-----CEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           52 WNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        52 ~s~~g~~la~g~-----------dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      ++|||+.|+++.           ++.|.+||..+.+......+...     ......+.+++++..+.....+   .+..
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~---p~~~  129 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS---PSPA  129 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC---CCCE
Confidence            999999887654           47899999999887766654222     2233467788988766654432   2399


Q ss_pred             EEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCC-ceee-EEEe---ccCCCcceE-EEccCCCceE
Q 015198          116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD-LKLL-HQIE---TLANLRGLC-CLSHHSSTSV  188 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~-~~~~-~~~~---~~~~~~~~~-~~~~~~~~~~  188 (411)
                      |.+.|+.+++.+.++.......-+..+++...+. .||......+.+ ++.. ....   ....++... .+.+ .++..
T Consensus       130 V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-~dg~~  208 (352)
T TIGR02658       130 VGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-KSGRL  208 (352)
T ss_pred             EEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc-CCCcE
Confidence            9999999999999998655544455555544444 677666655432 2211 1111   100000000 1222 14555


Q ss_pred             EEEecCCCCeEEEEEcCC------cceEEEec-------cccceeEEEecCCCCEEEEEc----------CCCeEEEEEE
Q 015198          189 LACPGLQRGQVRIEHFGL------NMIKLINA-------HDSHIACFTLTLDGLLLATAS----------TRGTLIRIFN  245 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~------~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s----------~dg~~I~vwd  245 (411)
                      +..+  ..|.|.+-+..+      .....+..       ..+.+.-++++++++.++...          ..+. |.++|
T Consensus       209 ~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~ViD  285 (352)
T TIGR02658       209 VWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LFVVD  285 (352)
T ss_pred             EEEe--cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EEEEE
Confidence            5544  349999855332      11222111       223344599999999887743          1245 99999


Q ss_pred             CCCCceEEEEeCCCCCcceEEEEeCCCCC-EEEEEe-CCCcEEEEEccccccCC
Q 015198          246 TVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVAS-DKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s-~dg~I~vwd~~~~~~~~  297 (411)
                      ..+++.+..+..+   ..+..++++||++ +|++.. .++.|.|+|+.+++...
T Consensus       286 ~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~  336 (352)
T TIGR02658       286 AKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS  336 (352)
T ss_pred             CCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence            9999999998853   3789999999999 887666 57889999999998664

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=3.6e-10  Score=106.17  Aligned_cols=285  Identities=14%  Similarity=0.146  Sum_probs=193.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc-------------eEEeecCCCCEEEEEEeccCCeEEEEecCCC
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-------------TFRRDLKSGGFRIVEMLFRCNILALVGAGDN  108 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  108 (411)
                      ......|++|+....++|+|+ ||.+++..+++...             ...+.+.+|...+..+.|+.+...+.+...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            455789999999999999999 99999998864211             1223456888889999999999999988887


Q ss_pred             CCCCCCeEEEEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceee-EEEeccCCCcceEEEc
Q 015198          109 SQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL-HQIETLANLRGLCCLS  181 (411)
Q Consensus       109 ~~~~d~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~  181 (411)
                           |.|.||-+-.|.-..++.   .++.|.+++|+.||..++   .||.|.+=.++..+.- +.+++.    ......
T Consensus        93 -----GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~----~l~hv~  163 (1189)
T KOG2041|consen   93 -----GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ----LLAHVL  163 (1189)
T ss_pred             -----ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh----ecccee
Confidence                 999999988876554432   578899999999998887   7999888776432211 112211    122334


Q ss_pred             cCCCceEEEEecCCCCeEEEEEcCCcce--------EEE----eccccceeEEEec--------CCCCEEEEEcCCCeEE
Q 015198          182 HHSSTSVLACPGLQRGQVRIEHFGLNMI--------KLI----NAHDSHIACFTLT--------LDGLLLATASTRGTLI  241 (411)
Q Consensus       182 ~~~~~~~l~~~g~~dg~i~i~~~~~~~~--------~~~----~~~~~~i~~l~~s--------p~g~~l~s~s~dg~~I  241 (411)
                      +++|...+.+ +-.+|.+.+++..+.-.        ...    ......|..+.|.        |+...|+.+..+|. +
T Consensus       164 ws~D~~~~Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr-~  241 (1189)
T KOG2041|consen  164 WSEDLEQALF-KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR-M  241 (1189)
T ss_pred             ecccHHHHHh-hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce-e
Confidence            4555555444 55788899977665211        111    1112235555553        47778999999998 8


Q ss_pred             EEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCcc
Q 015198          242 RIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDT  321 (411)
Q Consensus       242 ~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (411)
                      .|..-.+......+..   .-.+..+.|+++|..||+++.|..-.     ...                           
T Consensus       242 QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~-----~~~---------------------------  286 (1189)
T KOG2041|consen  242 QIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDAD-----EPT---------------------------  286 (1189)
T ss_pred             hhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCccccc-----Ccc---------------------------
Confidence            8875444433334443   24688999999999999998764210     000                           


Q ss_pred             ccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          322 LISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                            ..|...-++.++          ..+-++++|......++|...+.-++...|+.+|+-++.|
T Consensus       287 ------d~n~v~Fysp~G----------~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP  338 (1189)
T KOG2041|consen  287 ------DSNKVHFYSPYG----------HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRP  338 (1189)
T ss_pred             ------ccceEEEeccch----------hheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecc
Confidence                  011122222222          3456899999888888998877777888899999988887

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.30  E-value=1.5e-07  Score=87.06  Aligned_cols=279  Identities=13%  Similarity=0.120  Sum_probs=160.4

Q ss_pred             EEEEe-C----CcEEEEecCCCcceEEe--ecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC--cE--E
Q 015198           59 FAAGT-S----CGFRIYNCEPFKETFRR--DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS--RC--I  127 (411)
Q Consensus        59 la~g~-d----g~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~--~~--~  127 (411)
                      +++|+ .    +.|.+|+++.....+..  .+ .......-+.+++++.+|.+..+.. ...+.|..|++...  +.  +
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~   79 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLL   79 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEe
Confidence            45555 3    78999988433332221  11 1111222244455443333332210 01389999987664  22  2


Q ss_pred             EEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCC-ceeeEE---Eec--------cCCCcceEEEccCCCceEEE
Q 015198          128 GEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLLHQ---IET--------LANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       128 ~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~-~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~l~  190 (411)
                      .... .......++++|++.+++    .+|.|.++++.. +.+...   +..        .......-++.++|++++++
T Consensus        80 ~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~  159 (345)
T PF10282_consen   80 NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY  159 (345)
T ss_dssp             EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred             eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence            3333 355667899999998777    589999999976 444333   210        01122345666777777777


Q ss_pred             EecCCCCeEEEEEcCCcc--e---EEEe-ccccceeEEEecCCCCEEEEEcCCCeEEEEEECC--CCc--eEEEEeCC--
Q 015198          191 CPGLQRGQVRIEHFGLNM--I---KLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV--DGT--RLQEVRRG--  258 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~--~---~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~--~~~--~~~~~~~~--  258 (411)
                      ++.-....|.++..+...  +   ..+. .....-+.++|+|++++++...+....|.+|++.  ++.  .+..+...  
T Consensus       160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE  239 (345)
T ss_dssp             EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred             EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence            655455678886654432  2   2222 2345568899999999887665544339999987  443  23333321  


Q ss_pred             -C-CCcceEEEEeCCCCCEEEEEe-CCCcEEEEEccccc-cCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCc
Q 015198          259 -V-DRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRV-VGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSS  334 (411)
Q Consensus       259 -~-~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (411)
                       . .......|+++|||++|+++. ..+.|.+|+++... ...                                     
T Consensus       240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~-------------------------------------  282 (345)
T PF10282_consen  240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT-------------------------------------  282 (345)
T ss_dssp             TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE-------------------------------------
T ss_pred             cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE-------------------------------------
Confidence             1 112578899999999988766 45679999995422 110                                     


Q ss_pred             ccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEe-CCcEEEEEEecCCC
Q 015198          335 LSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM-DGSFYRCSFDPVHG  392 (411)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-dg~~~~~~~~~~~~  392 (411)
                                      .+..+.......-.++++++ +.|++++. ++.|.+|.++.+.|
T Consensus       283 ----------------~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG  326 (345)
T PF10282_consen  283 ----------------LVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG  326 (345)
T ss_dssp             ----------------EEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             ----------------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence                            01233333333456788888 66777775 58999999997665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=3.4e-09  Score=101.45  Aligned_cols=175  Identities=16%  Similarity=0.053  Sum_probs=117.5

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----E--cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      ..|.++|...+.......+...+....|+|||..++    .  ...|++||+.+++..... ....  ......++|++.
T Consensus       179 ~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~g--~~~~~~~SpDG~  255 (430)
T PRK00178        179 YTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFEG--LNGAPAWSPDGS  255 (430)
T ss_pred             eEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCCC--CcCCeEECCCCC
Confidence            368888877655544445777889999999998876    1  246999999887654322 2222  122455666777


Q ss_pred             EEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEEEEeCCCCCc
Q 015198          188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRA  262 (411)
Q Consensus       188 ~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~  262 (411)
                      .|+++...+|  .|++++........+..+........|+|||+.|+..+..   .. |+++|+.+++.......   ..
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~-iy~~d~~~g~~~~lt~~---~~  331 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQ-IYKVNVNGGRAERVTFV---GN  331 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeecC---CC
Confidence            7776555555  5666777776666676666667778999999987765542   25 78888887775432221   12


Q ss_pred             ceEEEEeCCCCCEEEEEeCC-C--cEEEEEcccccc
Q 015198          263 EIYSIALSPNVQWLAVASDK-G--TVHIFSLRVRVV  295 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~d-g--~I~vwd~~~~~~  295 (411)
                      ......|+|||++|+..+.+ +  .|.+||+.+++.
T Consensus       332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence            33457899999999877653 3  488889887653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=7e-10  Score=106.03  Aligned_cols=214  Identities=14%  Similarity=0.077  Sum_probs=128.0

Q ss_pred             cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe
Q 015198           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR  145 (411)
Q Consensus        66 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~  145 (411)
                      .+.++|.+......   +..+...+....|+|++..++..+.+.  ....|.+||+.+++...............|+||+
T Consensus       199 ~l~i~d~dG~~~~~---l~~~~~~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG  273 (448)
T PRK04792        199 QLMIADYDGYNEQM---LLRSPEPLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG  273 (448)
T ss_pred             EEEEEeCCCCCceE---eecCCCcccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC
Confidence            45555655432211   224455667788999987666543220  1147999999888764433344455678999999


Q ss_pred             EEEE----EcC--eEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE--EEcCCcceEEEecccc
Q 015198          146 IVVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDS  217 (411)
Q Consensus       146 ~~~~----~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~  217 (411)
                      ..++    .++  .|+++|+.+++... +..+..  ......+++++..|+++...++...|  ++........+.....
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~--~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~  350 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKALTR-ITRHRA--IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE  350 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC
Confidence            8776    244  48888988776433 332322  22344556677777776655555444  4554444444433333


Q ss_pred             ceeEEEecCCCCEEEEEcCC-Ce-EEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC-Cc--EEEEEcc
Q 015198          218 HIACFTLTLDGLLLATASTR-GT-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-GT--VHIFSLR  291 (411)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~d-g~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g~--I~vwd~~  291 (411)
                      .....+|+|||++|+..+.+ +. .|.++|+.+++.. .+... .  ......|+|||++|+..+.+ +.  +++++++
T Consensus       351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-R--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-C--CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            34457899999988776543 32 2666788877653 33321 1  12245799999988766544 33  6677764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=9.4e-10  Score=105.27  Aligned_cols=213  Identities=12%  Similarity=0.047  Sum_probs=131.0

Q ss_pred             EEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeE
Q 015198           67 FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI  146 (411)
Q Consensus        67 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~  146 (411)
                      |.++|.+.... ..  +..+...+....|+|++..++..+.+.  ....|.+||+.+++........+.+....|+|||.
T Consensus       181 l~~~d~~g~~~-~~--l~~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        181 LQRSDYDGARA-VT--LLQSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEECCCCCCc-eE--EecCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC
Confidence            55556554322 11  214455678889999987665543320  12579999998887655444555666789999998


Q ss_pred             EEE----EcC--eEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe--EEEEEcCCcceEEEeccccc
Q 015198          147 VVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDSH  218 (411)
Q Consensus       147 ~~~----~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~~  218 (411)
                      .++    .++  .|++||+.+++.. .+..+..  ......+++++..|+++...+|.  |++++........+......
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~--~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~  332 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPA--IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNY  332 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeE-EcccCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence            776    233  6999999887654 3333322  22334556677777776555554  55555554444444333333


Q ss_pred             eeEEEecCCCCEEEEEcCC-C--eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC-C--cEEEEEccc
Q 015198          219 IACFTLTLDGLLLATASTR-G--TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-G--TVHIFSLRV  292 (411)
Q Consensus       219 i~~l~~sp~g~~l~s~s~d-g--~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g--~I~vwd~~~  292 (411)
                      .....|+|+|++|+..+.+ +  . |.+||+.+++.. .+...   .......|+|||++|+..+.+ +  .|++++++.
T Consensus       333 ~~~~~~Spdg~~i~~~~~~~~~~~-l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        333 NARPRLSADGKTLVMVHRQDGNFH-VAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             ccceEECCCCCEEEEEEccCCceE-EEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            4457899999998876543 2  4 888999887653 33321   122356899999998876654 3  466667643

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.27  E-value=4.9e-10  Score=96.75  Aligned_cols=249  Identities=11%  Similarity=0.110  Sum_probs=180.1

Q ss_pred             CCCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCC
Q 015198           32 FGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ  110 (411)
Q Consensus        32 ~~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  110 (411)
                      +.+-+....+||.+.|+....-|...-+.+.+ |.+++||--....+...--.+..+..+.++.+..+...|+.+-+.  
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n--   89 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN--   89 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec--
Confidence            45556677899999999999999888888888 999999975544443333234667788889999998888888776  


Q ss_pred             CCCCeEEEEECC----CCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc
Q 015198          111 YPPTKVIIWDDH----QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH  182 (411)
Q Consensus       111 ~~d~~i~vwd~~----~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (411)
                         |++.-+.+.    ....++.+. |...+..+.|+....+++   .|..+.-.-.+.+..+..+.....   ..++.+
T Consensus        90 ---gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~  163 (404)
T KOG1409|consen   90 ---GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQF  163 (404)
T ss_pred             ---ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCce
Confidence               888888643    333344433 889999999987777776   455555444455554433322111   011111


Q ss_pred             CCCceEEEEecCCCCeEEE---EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE-EEEeCC
Q 015198          183 HSSTSVLACPGLQRGQVRI---EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL-QEVRRG  258 (411)
Q Consensus       183 ~~~~~~l~~~g~~dg~i~i---~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~-~~~~~~  258 (411)
                      +-  . .++.|...|.|.+   .......+..+.+|.+.+.+++|.+...+|++|..|.. +.+||+.-.+-+ .++.+ 
T Consensus       164 d~--~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~g-  238 (404)
T KOG1409|consen  164 DA--L-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQG-  238 (404)
T ss_pred             ee--E-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeecc-
Confidence            11  1 3445767777665   44455778889999999999999999999999999999 999999655433 34445 


Q ss_pred             CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       259 ~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                       |...|..+..-+--+.|.+++.||.|.+|+.+...
T Consensus       239 -h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  239 -HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             -chhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence             77789888888888899999999999999998754

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=4.6e-09  Score=96.18  Aligned_cols=235  Identities=18%  Similarity=0.178  Sum_probs=154.5

Q ss_pred             EEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC------CCCeEEEEEC
Q 015198           48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY------PPTKVIIWDD  121 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~------~d~~i~vwd~  121 (411)
                      +-+.|||.|.||++-....|.+|--.....+.+.    .+..+.-+.|+|+..+|++-+..|..      ....++|||+
T Consensus       214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF----~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF----YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeEEecCCceEEEEEeccceeeecCccHHHHHhc----cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            6799999999999999888999987766554332    23456677899999999987665443      2368999999


Q ss_pred             CCCcEEEEEee---cCce-eEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198          122 HQSRCIGEFAF---RSDV-RSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (411)
Q Consensus       122 ~~~~~~~~~~~---~~~i-~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (411)
                      .+|...+.+..   ...+ .-+.|+.|+++++  ....|.||+.....++..-...  ..++-.|+|+|.+.+||+=.-.
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslk--i~gIr~FswsP~~~llAYwtpe  367 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLK--ISGIRDFSWSPTSNLLAYWTPE  367 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccC--CccccCcccCCCcceEEEEccc
Confidence            99998888873   2222 2357999999999  6789999997664443222211  2255677888877788763222


Q ss_pred             CC----eEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEc----------CCCeEEEEEECCCCce-EEEEeCCC
Q 015198          196 RG----QVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS----------TRGTLIRIFNTVDGTR-LQEVRRGV  259 (411)
Q Consensus       196 dg----~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s----------~dg~~I~vwd~~~~~~-~~~~~~~~  259 (411)
                      ..    .+.| -....+.++....++-.=..+.|-.+|.+|+.--          .-.. +.|+.++.... +..+.   
T Consensus       368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~ve---  443 (698)
T KOG2314|consen  368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEVVE---  443 (698)
T ss_pred             ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCceeee---
Confidence            22    2222 2223333444344443344567778888887521          1123 56666655432 22333   


Q ss_pred             CCcceEEEEeCCCCCEEEEEeC---CCcEEEEEccc
Q 015198          260 DRAEIYSIALSPNVQWLAVASD---KGTVHIFSLRV  292 (411)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~---dg~I~vwd~~~  292 (411)
                      -...|...+|-|.|..+++.+.   ..++.+|.+++
T Consensus       444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             cchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            3457899999999998776543   34799999986

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=4.4e-10  Score=98.58  Aligned_cols=217  Identities=13%  Similarity=0.132  Sum_probs=144.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCc----ceEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEE
Q 015198           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFK----ETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+|..++.. ||.++++-++|.+.+|..+...    ......   .......+.-.+. -.++++|+..   .-..+.
T Consensus       104 ~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la---~g~g~~~~r~~~~~p~Iva~GGke---~~n~lk  176 (412)
T KOG3881|consen  104 GTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA---TGPGLYDVRQTDTDPYIVATGGKE---NINELK  176 (412)
T ss_pred             ccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeee---cCCceeeeccCCCCCceEecCchh---ccccee
Confidence            34445444443 4444444449999999987322    222221   2233444444443 3445556543   126799


Q ss_pred             EEECCCCcEEEEEe----------ecCceeEEEEcCC--eEEEE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEc
Q 015198          118 IWDDHQSRCIGEFA----------FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLS  181 (411)
Q Consensus       118 vwd~~~~~~~~~~~----------~~~~i~~~~~~~~--~~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~  181 (411)
                      +||++..+.+..-+          .+-.++++.|-+.  ...++   .-+.|++||.+.+ +++..+....+++..+.+.
T Consensus       177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~  256 (412)
T KOG3881|consen  177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT  256 (412)
T ss_pred             eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence            99999886665543          1345667788776  55555   6799999999765 5677777777766666666


Q ss_pred             cCCCceEEEEecCCCCeEEEEEcCCcc-eEE-EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC
Q 015198          182 HHSSTSVLACPGLQRGQVRIEHFGLNM-IKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV  259 (411)
Q Consensus       182 ~~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~  259 (411)
                      ++.  .+++ +|...|.+..++.+... ... +.+-.+.|++|..+|.+++|++++-|.. +||+|+.+.+++.....  
T Consensus       257 p~g--n~Iy-~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvYv--  330 (412)
T KOG3881|consen  257 PSG--NFIY-TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVYV--  330 (412)
T ss_pred             CCC--cEEE-EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhhh--
Confidence            654  4554 57788899886665543 333 6788999999999999999999999999 99999999777766553  


Q ss_pred             CCcceEEEEeCCCC
Q 015198          260 DRAEIYSIALSPNV  273 (411)
Q Consensus       260 ~~~~v~~l~~spdg  273 (411)
                       ...+++|.+.++-
T Consensus       331 -Ks~lt~il~~~~~  343 (412)
T KOG3881|consen  331 -KSRLTFILLRDDV  343 (412)
T ss_pred             -hccccEEEecCCc
Confidence             3356777776543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.26  E-value=4e-09  Score=97.36  Aligned_cols=188  Identities=12%  Similarity=0.167  Sum_probs=139.5

Q ss_pred             CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe----ecCceeEEEEc------C--------------CeEEEE---E
Q 015198           98 NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA----FRSDVRSVKLS------R--------------DRIVVV---L  150 (411)
Q Consensus        98 ~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~----~~~~i~~~~~~------~--------------~~~~~~---~  150 (411)
                      ...+++....|     |.+++||...++....+.    ..+...+..|.      |              +...++   .
T Consensus         4 ~~~~~A~~~~~-----g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~   78 (541)
T KOG4547|consen    4 ALDYFALSTGD-----GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP   78 (541)
T ss_pred             hhheEeecCCC-----CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence            34556666666     999999999998888876    23444444443      1              223333   5


Q ss_pred             cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCC
Q 015198          151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL  229 (411)
Q Consensus       151 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~  229 (411)
                      .|.|.+|+...++....+....+.-.+.++..+.+-..|. +++.|+.+..|+... ..+..+......+.+++++|||.
T Consensus        79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciy-S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIY-SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceE-ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            7899999999999998887555544566666555545554 466788888877665 45566677788899999999999


Q ss_pred             EEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC-----CCEEE-EEeCCCcEEEEEccccccC
Q 015198          230 LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN-----VQWLA-VASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd-----g~~l~-s~s~dg~I~vwd~~~~~~~  296 (411)
                      .|++++.  . |++||+++++.+.+|.+  |.++|.+++|..+     |.++. +...+.-|.+|-++...+.
T Consensus       158 ~l~~as~--~-ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kk  225 (541)
T KOG4547|consen  158 ILLTASR--Q-IKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKK  225 (541)
T ss_pred             EEEeccc--e-EEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeeeccccccceeEEEEEccccc
Confidence            9999884  4 99999999999999999  8999999999876     56555 4445566999988875443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=4.2e-09  Score=100.68  Aligned_cols=175  Identities=14%  Similarity=0.071  Sum_probs=113.7

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----Ec--CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      ..|.++|...............+....|+|||+.++    .+  ..|++||+.+++... +.....  ......++|++.
T Consensus       198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g--~~~~~~wSPDG~  274 (448)
T PRK04792        198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPG--INGAPRFSPDGK  274 (448)
T ss_pred             eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCC--CcCCeeECCCCC
Confidence            478888865555444444777889999999998877    12  369999998876533 221121  122455667777


Q ss_pred             EEEEecCCCCe--EEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC-CCe-EEEEEECCCCceEEEEeCCCCCcc
Q 015198          188 VLACPGLQRGQ--VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST-RGT-LIRIFNTVDGTRLQEVRRGVDRAE  263 (411)
Q Consensus       188 ~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~-~I~vwd~~~~~~~~~~~~~~~~~~  263 (411)
                      .|+++.+.+|.  |++++........+..+.......+|+|||+.|+..+. ++. .|+++|+.+++... +..  ....
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~--~g~~  351 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF--EGEQ  351 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec--CCCC
Confidence            78776666675  55566666666666666666778999999998876554 222 27777887776543 321  1112


Q ss_pred             eEEEEeCCCCCEEEEEeC-CC--cEEEEEccccc
Q 015198          264 IYSIALSPNVQWLAVASD-KG--TVHIFSLRVRV  294 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~-dg--~I~vwd~~~~~  294 (411)
                      ....+|+|||++|+..+. ++  .|.++|+.+++
T Consensus       352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~  385 (448)
T PRK04792        352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA  385 (448)
T ss_pred             CcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence            345789999999887655 34  35556766654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=4.2e-10  Score=109.95  Aligned_cols=137  Identities=14%  Similarity=0.201  Sum_probs=105.7

Q ss_pred             EcCeEEEEEcCCceeeEEEeccCCCc--ceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE-EEeccccceeEEEecC
Q 015198          150 LEHKIYVYSFVDLKLLHQIETLANLR--GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-LINAHDSHIACFTLTL  226 (411)
Q Consensus       150 ~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-~~~~~~~~i~~l~~sp  226 (411)
                      .++.+.+||...+.....+.......  ..+-+-.+++..+++ +|+--+.|.+|........ .+.+|.+.|..+.++.
T Consensus       107 ~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~-~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~  185 (967)
T KOG0974|consen  107 SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIA-SGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSL  185 (967)
T ss_pred             cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEE-eccccccEEEEeccccCCcceecccCCceEEEEEcc
Confidence            78899999988776666554333211  122233344545665 4778899999887654333 4899999999999999


Q ss_pred             CCCEEEEEcCCCeEEEEEECCCCceEE-EEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          227 DGLLLATASTRGTLIRIFNTVDGTRLQ-EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~-~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      ||+++++.|+|.. +|+|++.+.+... +.-+  |.+.|+.++|.|+  .+++++.|-+.++|+.+-
T Consensus       186 dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fg--HsaRvw~~~~~~n--~i~t~gedctcrvW~~~~  247 (967)
T KOG0974|consen  186 DGRYIASVSDDRS-IRLWPIDSREVLGCTGFG--HSARVWACCFLPN--RIITVGEDCTCRVWGVNG  247 (967)
T ss_pred             CCcEEEEEecCcc-eeeeecccccccCccccc--ccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence            9999999999999 9999999988765 3334  8999999999998  899999999999995443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.23  E-value=7.4e-09  Score=94.02  Aligned_cols=242  Identities=15%  Similarity=0.078  Sum_probs=160.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCC----------CC
Q 015198           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ----------YP  112 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~----------~~  112 (411)
                      ..-++..++|||.|.+|++.....|.+|......++...    .+..+..+.|+|++.+|++-+..+.          ..
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~----~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF----RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhheeee----ecCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence            455789999999999999999888999998876644333    3445778889999999999877644          23


Q ss_pred             CCeEEEEECCCCcEEEEEee-cCc--ee-EEEEcCCeEEEE--EcCeEEEEEcCCceee-EEEec-cCCCcceEEEccCC
Q 015198          113 PTKVIIWDDHQSRCIGEFAF-RSD--VR-SVKLSRDRIVVV--LEHKIYVYSFVDLKLL-HQIET-LANLRGLCCLSHHS  184 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~~-~~~--i~-~~~~~~~~~~~~--~dg~i~iwd~~~~~~~-~~~~~-~~~~~~~~~~~~~~  184 (411)
                      ++.+.+||..+|..+..+.. ..+  .. -+.|+-+..+++  ....++|+++ ++... ..+.. ....+....+++.+
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~  185 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG  185 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence            45799999999999998873 222  34 678999999988  6889999997 33221 11111 11212333444443


Q ss_pred             CceEEEEe----cCCCCeEEEEEcCCcceEE-EeccccceeEEEecCCCCEEEEEc-----------CCCeEEEEEECCC
Q 015198          185 STSVLACP----GLQRGQVRIEHFGLNMIKL-INAHDSHIACFTLTLDGLLLATAS-----------TRGTLIRIFNTVD  248 (411)
Q Consensus       185 ~~~~l~~~----g~~dg~i~i~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s-----------~dg~~I~vwd~~~  248 (411)
                      ++..||+-    +...+.+++|......+.. -.-....-..+.|++.|++|+.--           .... ++|+++..
T Consensus       186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~e  264 (561)
T COG5354         186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRITE  264 (561)
T ss_pred             CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeecc
Confidence            44444431    3467788887766433222 122223334688899998765421           1234 88888863


Q ss_pred             CceEEEEeCCCCCcceEEEEeCCCCCEEEEEe--CCCcEEEEEcccc
Q 015198          249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS--DKGTVHIFSLRVR  293 (411)
Q Consensus       249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s--~dg~I~vwd~~~~  293 (411)
                      .... ....  ..++|...+|.|+++.+++.+  .+-.+.++|++.+
T Consensus       265 ~~i~-V~~~--~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         265 RSIP-VEKD--LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             cccc-eecc--ccccceeeeecccCCceeEEecccccceeecccccc
Confidence            3332 2222  467999999999988776544  6778999998876

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.21  E-value=1e-10  Score=119.65  Aligned_cols=188  Identities=13%  Similarity=0.118  Sum_probs=145.5

Q ss_pred             CEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCC
Q 015198           87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD  161 (411)
Q Consensus        87 ~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~  161 (411)
                      -..+.+|.-+|...+.++|+.|     |.+++|....++.+..++  ....|+.+.|+.+|....   .||.+.+|.+. 
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~d-----gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQD-----GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCC-----ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            3456778888888888999988     999999999999988887  468899999999887666   79999999976 


Q ss_pred             ceeeEEEeccCCCcceEEEccCCCceEEEEec--CCCCeEEEEEcCCcceE--EEeccccceeEEEecCCCCEEEEEcCC
Q 015198          162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPG--LQRGQVRIEHFGLNMIK--LINAHDSHIACFTLTLDGLLLATASTR  237 (411)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~dg~i~i~~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~d  237 (411)
                      .+.....+.|...  ...|.+-.  ..++.+|  +.++.+.+|+.......  .-+.|.+.++++++.|..++|++|+.+
T Consensus      2282 pk~~~s~qchnk~--~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKA--LSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             CcceeccccCCcc--ccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence            4555555666553  33333333  2344444  46788999886543221  227899999999999999999999999


Q ss_pred             CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      |. |++||++..++++++..           +. ...++++|+..|.|+||++....-..
T Consensus      2358 G~-v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2358 GE-VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred             Cc-EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhh
Confidence            99 99999998887766653           33 55789999999999999999886544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.20  E-value=5.2e-09  Score=88.68  Aligned_cols=219  Identities=16%  Similarity=0.152  Sum_probs=139.7

Q ss_pred             CcEEEEecCCCcceEEeec-CCCCEEEEEEeccC---CeE-EEEecCCCCCCCCCeEEEEECCCCcEEEEEee-------
Q 015198           65 CGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFRC---NIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF-------  132 (411)
Q Consensus        65 g~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~-~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~-------  132 (411)
                      |.+.+|+++..+..-...+ ......+..|.|.-   ++. .++-+...     |.|.++..........++.       
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~-----G~i~~~r~~~~~ss~~L~~ls~~ki~  120 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHAR-----GQIQLYRNDEDESSVHLRGLSSKKIS  120 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecccc-----ceEEEEeeccceeeeeecccchhhhh
Confidence            4577888875433221001 12333444455541   222 33333333     8999988554444333331       


Q ss_pred             cCceeEEEEcCCeEEEE---EcCeEEEEEcCCceee--EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc
Q 015198          133 RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL--HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN  207 (411)
Q Consensus       133 ~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~  207 (411)
                      .....++.|++.+.-++   .+|.+.+-+.....+.  +.++.|....+...++...  .-|+++|+.|+.+..|+.+..
T Consensus       121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~--pnlvytGgDD~~l~~~D~R~p  198 (339)
T KOG0280|consen  121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE--PNLVYTGGDDGSLSCWDIRIP  198 (339)
T ss_pred             heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC--CceEEecCCCceEEEEEecCC
Confidence            11245667777766665   5788886665554443  3677787766666655433  347778999999999998732


Q ss_pred             ---ceEEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECC-CCceEEEEeCCCCCcceEEEEeCCC--CCEEEEEe
Q 015198          208 ---MIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSIALSPN--VQWLAVAS  280 (411)
Q Consensus       208 ---~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l~~spd--g~~l~s~s  280 (411)
                         .-...+.|...|.+|.-+| .+.+|++|+.|.. |++||.+ -++++..-.   ..+.|+.+.++|.  +++|+++-
T Consensus       199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CM  274 (339)
T KOG0280|consen  199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACM  274 (339)
T ss_pred             cceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHH
Confidence               2223467889999998875 5779999999999 9999998 466664443   4478999999985  34566666


Q ss_pred             CCCcEEEEEcccccc
Q 015198          281 DKGTVHIFSLRVRVV  295 (411)
Q Consensus       281 ~dg~I~vwd~~~~~~  295 (411)
                      ..| .+|-+++.+..
T Consensus       275 h~G-~ki~~~~~~~~  288 (339)
T KOG0280|consen  275 HNG-AKILDSSDKVL  288 (339)
T ss_pred             hcC-ceEEEeccccc
Confidence            777 88888887654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.20  E-value=2.9e-11  Score=115.15  Aligned_cols=230  Identities=13%  Similarity=0.141  Sum_probs=169.5

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEE
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYS  158 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd  158 (411)
                      +.+|-..|.+..|+..+..++++++|     ..++||..+++.++.... |.+.|+.++.+.....++   .|..|++|.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd-----~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDD-----RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCcc-----ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            34788889999999999999999998     999999999999999988 999999999999888887   688899999


Q ss_pred             cCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEE----e-ccccceeEEEecCCCCEEEE
Q 015198          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI----N-AHDSHIACFTLTLDGLLLAT  233 (411)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~----~-~~~~~i~~l~~sp~g~~l~s  233 (411)
                      +.++.++..+.+|.+.++.++++|-+       +.+.||++++|+.+.......    . ....-+.++.|-.++.-+++
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence            99999999999999855555554432       356899999999884332222    1 12345667788888889999


Q ss_pred             EcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCccccc
Q 015198          234 ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN-VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTEL  312 (411)
Q Consensus       234 ~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~  312 (411)
                      ++.|+. -..|.+.....        +...+.-+.++.| ..+.+++-.+-.+.+|++.+|....-+..+          
T Consensus       334 gs~d~e-a~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh----------  394 (1113)
T KOG0644|consen  334 GSRDGE-ARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH----------  394 (1113)
T ss_pred             ccCCcc-cccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc----------
Confidence            999998 88887543211        1111111122212 145666777888999999999866533333          


Q ss_pred             ccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEec
Q 015198          313 LNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~  389 (411)
                                                                    .+.++++-++|-  ..-+.++.||...||.+-+
T Consensus       395 ----------------------------------------------sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e  427 (1113)
T KOG0644|consen  395 ----------------------------------------------SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE  427 (1113)
T ss_pred             ----------------------------------------------ccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence                                                          124566677775  3455677799999998876

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=6.3e-09  Score=98.73  Aligned_cols=225  Identities=10%  Similarity=0.006  Sum_probs=132.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEE---EEe-CC--cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           40 SDVDEIELISVSWNQDYGCFA---AGT-SC--GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la---~g~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      +......+.+-+|+|||+.++   +.. ++  .|.+.++++++......+   ........|+||+..++.........+
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSPDG~~Laf~s~~~g~~d  256 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSPRKKLLAFISDRYGNPD  256 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECCCCCEEEEEECCCCCcc
Confidence            333455677889999997532   333 44  466667776544333323   223345789999866554332111112


Q ss_pred             CeEEEEECCCC---cEEEEEee-cCceeEEEEcCCeEEEE----EcCe--EEEEEcCC-ceeeEEEeccCCCcceEEEcc
Q 015198          114 TKVIIWDDHQS---RCIGEFAF-RSDVRSVKLSRDRIVVV----LEHK--IYVYSFVD-LKLLHQIETLANLRGLCCLSH  182 (411)
Q Consensus       114 ~~i~vwd~~~~---~~~~~~~~-~~~i~~~~~~~~~~~~~----~dg~--i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~  182 (411)
                      ..+.+|++..+   +....... ........|+|||..++    .++.  |+++++.. +.....+.....  ......+
T Consensus       257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~--~~~~p~w  334 (428)
T PRK01029        257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR--NSSCPAW  334 (428)
T ss_pred             eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC--CccceeE
Confidence            44555776653   33333322 23456789999998776    2454  55555532 233333433322  2334556


Q ss_pred             CCCceEEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC---CCeEEEEEECCCCceEEEEeC
Q 015198          183 HSSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       183 ~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      +|++..|++++..+|  .|.+++..+.....+......+....|+|||+.|+....   ... |+++|+..++...... 
T Consensus       335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~~~Lt~-  412 (428)
T PRK01029        335 SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKTRKIVI-  412 (428)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeec-
Confidence            777788887654443  577788777666666555556778999999998775432   345 8899998777544333 


Q ss_pred             CCCCcceEEEEeCCCC
Q 015198          258 GVDRAEIYSIALSPNV  273 (411)
Q Consensus       258 ~~~~~~v~~l~~spdg  273 (411)
                        ..+.+...+|+|-.
T Consensus       413 --~~g~~~~p~Ws~~~  426 (428)
T PRK01029        413 --GSGEKRFPSWGAFP  426 (428)
T ss_pred             --CCCcccCceecCCC
Confidence              33456677888753

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.18  E-value=1.7e-08  Score=98.94  Aligned_cols=193  Identities=10%  Similarity=0.091  Sum_probs=144.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEE---EEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRI---VEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      .+.|....+.-+.+.++.+. ++.+.+|+........+. ........   .-+-++++..++++|.--     +.|.+|
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~-----~~iivW  160 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKI-QSDERCTLYSSLIIGDSAEELYIASGSVF-----GEIIVW  160 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCceehhc-CCCceEEEEeEEEEeccCcEEEEEecccc-----ccEEEE
Confidence            34445555666777888888 999999998764433322 11221111   223366788888888876     999999


Q ss_pred             ECCC-CcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeE-EEeccCCCcceEEEccCCCceEEEEecC
Q 015198          120 DDHQ-SRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLH-QIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       120 d~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      +... ...+....|.+.|.++.++.||.+++   .|..+++|++++.+... ..-+|...+.-+++.++    .++ +++
T Consensus       161 ~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n----~i~-t~g  235 (967)
T KOG0974|consen  161 KPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN----RII-TVG  235 (967)
T ss_pred             eccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc----eeE-Eec
Confidence            9663 33443444999999999999999998   79999999999987766 45567765555666554    344 466


Q ss_pred             CCCeEEEEEcCCcceEEEeccc-cceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198          195 QRGQVRIEHFGLNMIKLINAHD-SHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (411)
Q Consensus       195 ~dg~i~i~~~~~~~~~~~~~~~-~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (411)
                      .|-+.++|..+...+..+..|. ..|..++..++...+++++.|+. +++||+..
T Consensus       236 edctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~-lk~~~l~~  289 (967)
T KOG0974|consen  236 EDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST-LKLWDLNG  289 (967)
T ss_pred             cceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc-hhhhhhhc
Confidence            9999999999998888888885 56899999999999999999999 99999754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.16  E-value=1.8e-07  Score=96.13  Aligned_cols=241  Identities=13%  Similarity=0.128  Sum_probs=150.9

Q ss_pred             CCeEEEEEcCCCCEEEEEe--C---CcEEEEecCCCcc-eEEeecC-----CCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           45 IELISVSWNQDYGCFAAGT--S---CGFRIYNCEPFKE-TFRRDLK-----SGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~--d---g~i~iw~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      ..+...+|.+....+.+..  .   ..|.+........ .....+.     .....++.+.|-++...++.+..+     
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~-----   96 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALAS-----   96 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECC-----
Confidence            4577778877655444333  2   2344443332221 1111121     345678888888776544444444     


Q ss_pred             CeEEEE----ECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceee---------------------
Q 015198          114 TKVIIW----DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL---------------------  165 (411)
Q Consensus       114 ~~i~vw----d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~---------------------  165 (411)
                      |.|.+.    +..+...-..-.....|.+++|+||+.+++   .++++.+.+- +...+                     
T Consensus        97 Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWG  175 (928)
T PF04762_consen   97 GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWG  175 (928)
T ss_pred             ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccC
Confidence            888888    544444333333788999999999998888   4667766542 11111                     


Q ss_pred             ---EEEec------------cC----------CCcceEEEccCCCceEEEEecC--C---CCeEEEEEcCCcceEEEecc
Q 015198          166 ---HQIET------------LA----------NLRGLCCLSHHSSTSVLACPGL--Q---RGQVRIEHFGLNMIKLINAH  215 (411)
Q Consensus       166 ---~~~~~------------~~----------~~~~~~~~~~~~~~~~l~~~g~--~---dg~i~i~~~~~~~~~~~~~~  215 (411)
                         .+|.+            +.          .....+.++|-+||.++|++.-  .   -..++||++.+.....-+.-
T Consensus       176 kKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v  255 (928)
T PF04762_consen  176 KKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPV  255 (928)
T ss_pred             cccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccC
Confidence               11110            00          1114567889999999987543  2   25788899987655444444


Q ss_pred             ccceeEEEecCCCCEEEEEcC---CCeEEEEEECCCCceEEEEeCC--CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198          216 DSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRG--VDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                      .+--.+++|-|.|++||+.-.   ... |.+|. ++|-.-..|...  .....|..|.|++|+..||..-.|. |++|-.
T Consensus       256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~-VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~  332 (928)
T PF04762_consen  256 DGLEGALSWRPSGNLIASSQRLPDRHD-VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR  332 (928)
T ss_pred             CCccCCccCCCCCCEEEEEEEcCCCcE-EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence            444567899999999998764   344 88887 566554454432  2456899999999999999988766 999988


Q ss_pred             cccc
Q 015198          291 RVRV  294 (411)
Q Consensus       291 ~~~~  294 (411)
                      .+..
T Consensus       333 ~NYH  336 (928)
T PF04762_consen  333 SNYH  336 (928)
T ss_pred             eCCE
Confidence            7753

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.15  E-value=3e-07  Score=94.59  Aligned_cols=313  Identities=15%  Similarity=0.120  Sum_probs=184.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEE----ecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIY----NCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ...+.|.++.|-++...++++. +|.|.++    +.+........   .-..++.++.|+||...++-...+     +++
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG---~vd~GI~a~~WSPD~Ella~vT~~-----~~l  144 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG---SVDSGILAASWSPDEELLALVTGE-----GNL  144 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE---EEcCcEEEEEECCCcCEEEEEeCC-----CEE
Confidence            4457899999999998888888 9999998    44442222222   335578899999987665554444     777


Q ss_pred             EEEECCCCcEEEEEe-------------------------------------------------ecCceeEEEEcCCeEE
Q 015198          117 IIWDDHQSRCIGEFA-------------------------------------------------FRSDVRSVKLSRDRIV  147 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-------------------------------------------------~~~~i~~~~~~~~~~~  147 (411)
                      .+.. .+.+.+.+..                                                 ....-..++|-.||.+
T Consensus       145 ~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y  223 (928)
T PF04762_consen  145 LLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY  223 (928)
T ss_pred             EEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence            7664 2211111110                                                 1113346789999999


Q ss_pred             EE------E-c--CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC--eEEEEEcCCcceEEEe---
Q 015198          148 VV------L-E--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLIN---  213 (411)
Q Consensus       148 ~~------~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~---  213 (411)
                      ++      . +  ..+++|+- .|++...-+.-.+  ---+++|.|.|.+||++-...+  .|.++..++-....|.   
T Consensus       224 FAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~g--Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~  300 (928)
T PF04762_consen  224 FAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDG--LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF  300 (928)
T ss_pred             EEEEEEEcCCCceeEEEEECC-CceEEeccccCCC--ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC
Confidence            88      1 2  57999994 4665544442222  2345677777788887654333  3444777775554443   


Q ss_pred             -ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc--eEEEEeCCCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 015198          214 -AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFS  289 (411)
Q Consensus       214 -~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd  289 (411)
                       .....|..+.|++|+..||..-.|.  |.+|-..+..  +.+++.-. ....+..+.|+|.. ..|...+.+|.+..++
T Consensus       301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  301 DPEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             CCCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence             3456899999999999999977554  9999876654  33344422 22345559999954 4577777778776666


Q ss_pred             ccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEcc
Q 015198          290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS  369 (411)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (411)
                      +.-.-........++              .. ....-+| +......+-...+|-    -=....+.++. .+..++|++
T Consensus       378 ~~~~v~~s~~~~~~D--------------~g-~vaVIDG-~~lllTpf~~a~VPP----PMs~~~l~~~~-~v~~vaf~~  436 (928)
T PF04762_consen  378 FAWDVSRSPGSSPND--------------NG-TVAVIDG-NKLLLTPFRRAVVPP----PMSSYELELPS-PVNDVAFSP  436 (928)
T ss_pred             EEEEEEecCCCCccC--------------ce-EEEEEeC-CeEEEecccccCCCc----hHhceEEcCCC-CcEEEEEeC
Confidence            544322110000000              00 0000011 111000111111221    11123455555 566778887


Q ss_pred             C-CEEEEEEeCCcEEEEEEecC
Q 015198          370 Q-NTVVIVSMDGSFYRCSFDPV  390 (411)
Q Consensus       370 ~-~~~~~~~~dg~~~~~~~~~~  390 (411)
                      + ..+++...||.+.+|.++..
T Consensus       437 ~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  437 SNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CCCeEEEEECCCCEEEEEecCC
Confidence            7 56999999999999997653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.13  E-value=7e-08  Score=90.76  Aligned_cols=222  Identities=15%  Similarity=0.093  Sum_probs=127.1

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~  134 (411)
                      +..+++++ ++.+..+|.++++......+. ... ...... .++.+++.. .+     +.|..||.++|+.+..+....
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~-~~~p~v-~~~~v~v~~-~~-----g~l~a~d~~tG~~~W~~~~~~  175 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEV-LSPPLV-ANGLVVVRT-ND-----GRLTALDAATGERLWTYSRVT  175 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccC-cee-ecCCEE-ECCEEEEEC-CC-----CeEEEEEcCCCceeeEEccCC
Confidence            45666666 888888888777766665442 111 111111 233444443 33     899999999999988876433


Q ss_pred             cee------EEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCC----c-ceEEE--ccCCCceEEEEecCCCCeE
Q 015198          135 DVR------SVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANL----R-GLCCL--SHHSSTSVLACPGLQRGQV  199 (411)
Q Consensus       135 ~i~------~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~----~-~~~~~--~~~~~~~~l~~~g~~dg~i  199 (411)
                      ...      ...+. ++.+++  .++.++.+|.++|+.+.........    . ....+  .+.-.+..+++ ++.+|.+
T Consensus       176 ~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~-~~~~g~l  253 (377)
T TIGR03300       176 PALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYA-VSYQGRV  253 (377)
T ss_pred             CceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEE-EEcCCEE
Confidence            221      11222 234444  6789999999999877654321100    0 00000  11001123333 3467888


Q ss_pred             EEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEE
Q 015198          200 RIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV  278 (411)
Q Consensus       200 ~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s  278 (411)
                      +.++. +++.+.... .. ....+.  ..+..++.++.+|. |..+|..+|+.+...... ..........  .+..|++
T Consensus       254 ~a~d~~tG~~~W~~~-~~-~~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~g~~l~~  325 (377)
T TIGR03300       254 AALDLRSGRVLWKRD-AS-SYQGPA--VDDNRLYVTDADGV-VVALDRRSGSELWKNDEL-KYRQLTAPAV--VGGYLVV  325 (377)
T ss_pred             EEEECCCCcEEEeec-cC-CccCce--EeCCEEEEECCCCe-EEEEECCCCcEEEccccc-cCCccccCEE--ECCEEEE
Confidence            88665 444433332 11 111222  24567888889999 999999999887655321 1111222222  3568889


Q ss_pred             EeCCCcEEEEEccccccC
Q 015198          279 ASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       279 ~s~dg~I~vwd~~~~~~~  296 (411)
                      ++.+|.|+++|.++++..
T Consensus       326 ~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       326 GDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             EeCCCEEEEEECCCCCEE
Confidence            999999999999888753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.13  E-value=4.6e-07  Score=82.29  Aligned_cols=220  Identities=11%  Similarity=0.029  Sum_probs=126.4

Q ss_pred             CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCC--C---CCCCCCeEEEEECCCCcEEEEEeecCc----
Q 015198           65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD--N---SQYPPTKVIIWDDHQSRCIGEFAFRSD----  135 (411)
Q Consensus        65 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--d---~~~~d~~i~vwd~~~~~~~~~~~~~~~----  135 (411)
                      +.|.+.|.++.+.+-.... +.....  + .++++..+..+..  .   ..-.+..|.+||+.+.+.+.++.....    
T Consensus        27 ~~v~ViD~~~~~v~g~i~~-G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG-GFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc-cCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence            7899999988665444433 111111  2 5666543332222  0   000128999999999999999884333    


Q ss_pred             ----eeEEEEcCCeEEEE----E-cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE--EEc
Q 015198          136 ----VRSVKLSRDRIVVV----L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHF  204 (411)
Q Consensus       136 ----i~~~~~~~~~~~~~----~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~  204 (411)
                          -..++++|||+++.    . +..|.+.|+.+++.+.++.....   ...+....+..++ .+  .||....  .+.
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~---~~vy~t~e~~~~~-~~--~Dg~~~~v~~d~  176 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC---YHIFPTANDTFFM-HC--RDGSLAKVGYGT  176 (352)
T ss_pred             ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC---cEEEEecCCccEE-Ee--ecCceEEEEecC
Confidence                33789999998776    3 78999999999999999876432   1222222222222 21  2343332  222


Q ss_pred             CCcc-eE---EEeccccce-eEEEecC-CCCEEEEEcCCCeEEEEEECCCC-----ceEEEEeC-----CCCCcceEEEE
Q 015198          205 GLNM-IK---LINAHDSHI-ACFTLTL-DGLLLATASTRGTLIRIFNTVDG-----TRLQEVRR-----GVDRAEIYSIA  268 (411)
Q Consensus       205 ~~~~-~~---~~~~~~~~i-~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~-----~~~~~~~~-----~~~~~~v~~l~  268 (411)
                      +++. ..   .+.....++ ..-.|.+ +|+++....+ |. |.+.|+...     +....+..     +-..+.+.-++
T Consensus       177 ~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia  254 (352)
T TIGR02658       177 KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA  254 (352)
T ss_pred             CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence            2221 11   111101111 0013455 8888877776 88 999996433     22222221     11233455599


Q ss_pred             eCCCCCEEEEEeC----------CCcEEEEEccccccC
Q 015198          269 LSPNVQWLAVASD----------KGTVHIFSLRVRVVG  296 (411)
Q Consensus       269 ~spdg~~l~s~s~----------dg~I~vwd~~~~~~~  296 (411)
                      ++++++.|++...          .+.|.++|..+++..
T Consensus       255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi  292 (352)
T TIGR02658       255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL  292 (352)
T ss_pred             EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence            9999998887542          246999998888754

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.12  E-value=1.8e-07  Score=82.03  Aligned_cols=178  Identities=13%  Similarity=0.148  Sum_probs=120.5

Q ss_pred             CeEEEEECCCC----cEEEEEeecCceeEEEEcCCeEEEE------EcCeEEEEEcCC--ceeeE--EEeccCCCcceEE
Q 015198          114 TKVIIWDDHQS----RCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVD--LKLLH--QIETLANLRGLCC  179 (411)
Q Consensus       114 ~~i~vwd~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~------~dg~i~iwd~~~--~~~~~--~~~~~~~~~~~~~  179 (411)
                      ..|.+|++.+.    ..++........+-|+|+|+.+.+.      .+|.|-.|.+..  |++..  .......  ..+-
T Consensus        16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~y   93 (346)
T COG2706          16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPCY   93 (346)
T ss_pred             CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--CCeE
Confidence            78999997732    2233334678889999999985554      267787777753  54432  2222222  2367


Q ss_pred             EccCCCceEEEEecCCCCeEEEEEcCC----cceEEEeccccc----------eeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          180 LSHHSSTSVLACPGLQRGQVRIEHFGL----NMIKLINAHDSH----------IACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~----------i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                      ++.+.++++++++....|.|.+...+.    .....+..|.+.          +....+.|++++|++.+-.-..|.+|+
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~  173 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence            777888889988888889999965532    222223345444          788899999999998764322399999


Q ss_pred             CCCCceEEEEeCC-CCCcceEEEEeCCCCCEEEEEeC-CCcEEEEEcccc
Q 015198          246 TVDGTRLQEVRRG-VDRAEIYSIALSPNVQWLAVASD-KGTVHIFSLRVR  293 (411)
Q Consensus       246 ~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~~~  293 (411)
                      +..|++...-... ........|.|+|++++....++ +++|.+|+.+..
T Consensus       174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            9987653221111 13346789999999998876664 889999999985

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=5.6e-09  Score=96.01  Aligned_cols=175  Identities=11%  Similarity=0.203  Sum_probs=137.9

Q ss_pred             CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccC---------CCcceEEE
Q 015198          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA---------NLRGLCCL  180 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~  180 (411)
                      ..|+-++++.|..+..+. ..+.++++.+++-..+++   .+|.|..||.++...+..+....         ....+.++
T Consensus       155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal  234 (703)
T KOG2321|consen  155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL  234 (703)
T ss_pred             cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence            678888999999999998 568999999999877777   69999999998877666664322         22357888


Q ss_pred             ccCCCceEEEEecCCCCeEEEEEcCCcceEEEecc--ccceeEEEecCCC--CEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198          181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH--DSHIACFTLTLDG--LLLATASTRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~--~~~i~~l~~sp~g--~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (411)
                      .+..++..+++ |..+|.+.|++.........+.|  .-+|..+.|.+.+  ..+++.  |...++|||-.+|+....+.
T Consensus       235 ~F~d~gL~~aV-Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~~~Gk~~asiE  311 (703)
T KOG2321|consen  235 KFRDDGLHVAV-GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKIWDECTGKPMASIE  311 (703)
T ss_pred             EecCCceeEEe-eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec--chHHhhhcccccCCceeecc
Confidence            89888888876 88999999988887666666666  5578889997763  345443  33339999999999987777


Q ss_pred             CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .   ...++.+++-|++-+++++.+++.+..|=+..-.
T Consensus       312 p---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  312 P---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             c---cCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence            4   4469999999999999999999988888776544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.09  E-value=2.1e-07  Score=97.45  Aligned_cols=238  Identities=13%  Similarity=0.093  Sum_probs=145.6

Q ss_pred             EEEEEcCCC-CEEEEEe-CCcEEEEecCCCcceEEeecCCCC-------------EEEEEEeccCCe-EEEEecCCCCCC
Q 015198           48 ISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGG-------------FRIVEMLFRCNI-LALVGAGDNSQY  111 (411)
Q Consensus        48 ~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~l~s~~~d~~~  111 (411)
                      ..+++++++ .++++-. ++.|++||.+. .......- .+.             .....+.+++++ .++++....   
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~-~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n---  645 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGS-TGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN---  645 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEcc-CCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC---
Confidence            467888764 4555545 88899999764 22211110 010             123455666544 344444433   


Q ss_pred             CCCeEEEEECCCCcEEEEEee------------------cCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEe
Q 015198          112 PPTKVIIWDDHQSRCIGEFAF------------------RSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIE  169 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~~~------------------~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~  169 (411)
                        +.|+++|+.++. +.++..                  -..-..++++| ++.+.+   .++.|++||..++... .+.
T Consensus       646 --~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~  721 (1057)
T PLN02919        646 --HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS  721 (1057)
T ss_pred             --ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe
Confidence              789999977654 333321                  01235789998 455544   5688999998776543 221


Q ss_pred             ccC-------------CCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEec--------------c-------
Q 015198          170 TLA-------------NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--------------H-------  215 (411)
Q Consensus       170 ~~~-------------~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~--------------~-------  215 (411)
                      +..             .......+++++++..|+++...++.|++|+........+.+              +       
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~  801 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV  801 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence            110             001123455566666555556678899998865432221110              0       


Q ss_pred             -ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC-----------CCcceEEEEeCCCCCEEEEEeCCC
Q 015198          216 -DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWLAVASDKG  283 (411)
Q Consensus       216 -~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l~s~s~dg  283 (411)
                       -.....++++++|+++++-..++. |++||..++........+.           .-.....++++++|+++++-+.++
T Consensus       802 ~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn  880 (1057)
T PLN02919        802 LLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS  880 (1057)
T ss_pred             hccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence             112357899999998888888888 9999998776543322110           112567899999999888888999


Q ss_pred             cEEEEEcccccc
Q 015198          284 TVHIFSLRVRVV  295 (411)
Q Consensus       284 ~I~vwd~~~~~~  295 (411)
                      .|++||+++++.
T Consensus       881 ~Irvid~~~~~~  892 (1057)
T PLN02919        881 LIRYLDLNKGEA  892 (1057)
T ss_pred             EEEEEECCCCcc
Confidence            999999998764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.08  E-value=3.1e-07  Score=86.37  Aligned_cols=219  Identities=16%  Similarity=0.090  Sum_probs=132.5

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~  134 (411)
                      +..+++++ ++.+.-+|..+++.+....+......  ..... ++.++++. .+     +.+..+|..+|+.+.......
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~--~p~v~-~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~~  135 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSG--GVGAD-GGLVFVGT-EK-----GEVIALDAEDGKELWRAKLSS  135 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc--ceEEc-CCEEEEEc-CC-----CEEEEEECCCCcEeeeeccCc
Confidence            55777777 89999999988888777665332111  11122 34444443 34     999999999999988877544


Q ss_pred             ceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcce---EEEccCCCceEEEEecCCCCeEEEEE-cCCcc
Q 015198          135 DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGL---CCLSHHSSTSVLACPGLQRGQVRIEH-FGLNM  208 (411)
Q Consensus       135 ~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~  208 (411)
                      .+.+.....++.+++  .++.|+.||.++|+.+..+.........   ...... ++ .++ .+..++.+...+ .+++.
T Consensus       136 ~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~-~~~~~g~v~ald~~tG~~  212 (377)
T TIGR03300       136 EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVL-VGFAGGKLVALDLQTGQP  212 (377)
T ss_pred             eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEE-EECCCCEEEEEEccCCCE
Confidence            443322223445554  6899999999999988777543321110   000111 12 233 355677777644 45544


Q ss_pred             eEEEeccc----cc------e-eEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEE
Q 015198          209 IKLINAHD----SH------I-ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA  277 (411)
Q Consensus       209 ~~~~~~~~----~~------i-~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  277 (411)
                      +.......    ..      + ....+  .+..++.++.+|. ++.||..+|+.+......    ......  .++..++
T Consensus       213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~vy  283 (377)
T TIGR03300       213 LWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGR-VAALDLRSGRVLWKRDAS----SYQGPA--VDDNRLY  283 (377)
T ss_pred             eeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCE-EEEEECCCCcEEEeeccC----CccCce--EeCCEEE
Confidence            43322110    00      0 01111  2456777888999 999999999987666531    111222  2456788


Q ss_pred             EEeCCCcEEEEEcccccc
Q 015198          278 VASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       278 s~s~dg~I~vwd~~~~~~  295 (411)
                      +++.||.|+.+|..+++.
T Consensus       284 v~~~~G~l~~~d~~tG~~  301 (377)
T TIGR03300       284 VTDADGVVVALDRRSGSE  301 (377)
T ss_pred             EECCCCeEEEEECCCCcE
Confidence            888999999999988864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=8.4e-10  Score=99.41  Aligned_cols=250  Identities=12%  Similarity=0.124  Sum_probs=172.3

Q ss_pred             CCccccCCCCCCeEEEEEcCC--CCEEEEEe-CCcEEEEecCCCcceE-EeecCCCCEEEEEEeccCC-eEEEEecCCCC
Q 015198           35 PQTAFSDVDEIELISVSWNQD--YGCFAAGT-SCGFRIYNCEPFKETF-RRDLKSGGFRIVEMLFRCN-ILALVGAGDNS  109 (411)
Q Consensus        35 ~~~~~~~~h~~~V~~l~~s~~--g~~la~g~-dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~  109 (411)
                      +......+|...|....|-|.  .+.+++++ ||.+++=.+...+.+. ...+..|...+..++..|. -..|.+++.| 
T Consensus       176 ~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD-  254 (559)
T KOG1334|consen  176 PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGED-  254 (559)
T ss_pred             cccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccc-
Confidence            344567899999999999885  45677766 9999987775433322 2334456666666665554 3456677777 


Q ss_pred             CCCCCeEEEEECCCCcEEEEEe----ecC---ceeEEEEcCCeEEEE----EcCeEEEEEcCCce------eeEEEec--
Q 015198          110 QYPPTKVIIWDDHQSRCIGEFA----FRS---DVRSVKLSRDRIVVV----LEHKIYVYSFVDLK------LLHQIET--  170 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~~----~~~---~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~------~~~~~~~--  170 (411)
                          +.+.-+|+..+.+...+.    ...   ...+++.+|-.....    .|..+++||.+.-.      .+..+-.  
T Consensus       255 ----~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h  330 (559)
T KOG1334|consen  255 ----AVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH  330 (559)
T ss_pred             ----cceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc
Confidence                999999988776544443    222   567888888665333    67889999985321      1222211  


Q ss_pred             --cCCCcceEEEccCC-CceEEEEecCCCCeEEEEEcCC-------------cceEE-Eecccc--ceeEEEe-cCCCCE
Q 015198          171 --LANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFGL-------------NMIKL-INAHDS--HIACFTL-TLDGLL  230 (411)
Q Consensus       171 --~~~~~~~~~~~~~~-~~~~l~~~g~~dg~i~i~~~~~-------------~~~~~-~~~~~~--~i~~l~~-sp~g~~  230 (411)
                        ...++.+.++.++. .+.+|+  ...|-.|+++....             ..+.. +++|..  .|..+-| -|...|
T Consensus       331 l~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy  408 (559)
T KOG1334|consen  331 LVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY  408 (559)
T ss_pred             ccccCcccceeEEecCCccceee--eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence              14566777777773 344554  34677888864332             12222 677854  3556654 588899


Q ss_pred             EEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          231 LATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       231 l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      +++|+.-|. |.||+-.+++.+.-+.+  ....|+||.=+|--..||+++-|..|+||--.+.+
T Consensus       409 VvSGSDCGh-IFiW~K~t~eii~~Meg--Dr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  409 VVSGSDCGH-IFIWDKKTGEIIRFMEG--DRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             EEecCccce-EEEEecchhHHHHHhhc--ccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            999999999 99999999999988888  44489999999999999999999999999875544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.08  E-value=1.7e-08  Score=87.40  Aligned_cols=197  Identities=12%  Similarity=0.178  Sum_probs=136.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC--cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      -..++++++++++...|++|- .|++.-+.+...  +....+....|...+..+.|+-....+++.+.|     ..+.--
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d-----k~~~~h  141 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD-----KQFAWH  141 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccc-----cceEEE
Confidence            356789999999999999999 899888876421  111222223677888888898888888888876     555544


Q ss_pred             ECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEc--CCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSF--VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       120 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      -.+.+..+..+.......++.+.-.-.++. ..|.|.+..+  ....++..+.+|..  .+.++.+++....| ++|..|
T Consensus       142 c~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~--~~~~l~Wd~~~~~L-fSg~~d  218 (404)
T KOG1409|consen  142 CTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTG--EVTCLKWDPGQRLL-FSGASD  218 (404)
T ss_pred             eeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCccc--ceEEEEEcCCCcEE-Eecccc
Confidence            456666555554433333333332222222 3455555444  44567777888877  45566666655555 468899


Q ss_pred             CeEEEEEcCCcc--eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198          197 GQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (411)
Q Consensus       197 g~i~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (411)
                      ..+.+|+..+..  ...+.+|...|..+...+--+.|.+++.||. |.+||.+.
T Consensus       219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn~  271 (404)
T KOG1409|consen  219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMNV  271 (404)
T ss_pred             CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEeccc
Confidence            999999988754  4566789999999988888889999999999 99999863

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.03  E-value=3.2e-07  Score=78.16  Aligned_cols=233  Identities=11%  Similarity=0.093  Sum_probs=136.1

Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEecCCC-cce-EEeec-CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           49 SVSWNQDYGCFAAGTSCGFRIYNCEPF-KET-FRRDL-KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        49 ~l~~s~~g~~la~g~dg~i~iw~~~~~-~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      .++.+.+|++||+-.|..|.|-..... ..+ -+... +.....-..++|++|..+++.+...     |+|+++|+.. .
T Consensus         2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~-----G~i~vfdl~g-~   75 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST-----GTIRVFDLMG-S   75 (282)
T ss_pred             ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC-----CeEEEEeccc-c
Confidence            467789999999999999998876532 111 11111 2334455678899999999988776     9999999654 4


Q ss_pred             EEEEEe--------ecCceeEEEEcCCe-------EEEE--EcCeEEEEEcCC-----ceeeEEEecc-CCCcceEEEcc
Q 015198          126 CIGEFA--------FRSDVRSVKLSRDR-------IVVV--LEHKIYVYSFVD-----LKLLHQIETL-ANLRGLCCLSH  182 (411)
Q Consensus       126 ~~~~~~--------~~~~i~~~~~~~~~-------~~~~--~dg~i~iwd~~~-----~~~~~~~~~~-~~~~~~~~~~~  182 (411)
                      .+..+.        ....|..+.|.+-.       .+++  ..|.++-|-+..     .+..+.+... ..+..+.++.+
T Consensus        76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy  155 (282)
T PF15492_consen   76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY  155 (282)
T ss_pred             eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence            444443        23456666665422       2333  678777776532     2333444321 12346677778


Q ss_pred             CCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEec---CCCCEEEEEcCCCe-----EEEEEECCCCceEEE
Q 015198          183 HSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLT---LDGLLLATASTRGT-----LIRIFNTVDGTRLQE  254 (411)
Q Consensus       183 ~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~s---p~g~~l~s~s~dg~-----~I~vwd~~~~~~~~~  254 (411)
                      ++..++|+++|.....-..+          ++....+++-.+-   |..+. ++...|+.     .-.+|.+-+.+... 
T Consensus       156 ~p~h~LLlVgG~~~~~~~~s----------~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs-  223 (282)
T PF15492_consen  156 HPKHRLLLVGGCEQNQDGMS----------KASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFS-  223 (282)
T ss_pred             cCCCCEEEEeccCCCCCccc----------cccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeee-
Confidence            88878888777655421111          1112222222221   22211 12222221     01234433322211 


Q ss_pred             EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 015198          255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS  300 (411)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~  300 (411)
                      .. ......|..|..||||+.||+...+|.|.+|++.+-.......
T Consensus       224 ~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  224 RQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             cc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            11 1245689999999999999999999999999998876554333

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.03  E-value=1.8e-07  Score=84.56  Aligned_cols=142  Identities=11%  Similarity=-0.054  Sum_probs=107.5

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CC-cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SC-GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      .-+|.+.|.-..+.-+++-++.|. || .+-||+.++.+.. +  +...-..+.++..++++..++.+.+.     ..|.
T Consensus       355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r--~e~~lg~I~av~vs~dGK~~vvaNdr-----~el~  426 (668)
T COG4946         355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-R--IEKDLGNIEAVKVSPDGKKVVVANDR-----FELW  426 (668)
T ss_pred             EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-E--eeCCccceEEEEEcCCCcEEEEEcCc-----eEEE
Confidence            457888899999999999999999 77 8999999875522 2  22556678889999999988887776     8999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      +.|+.+|.....-+ ..+-|+.+.|+|++++++       ....|+++|+..++....-....   ...+-++++++++|
T Consensus       427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta---~DfsPaFD~d~ryL  503 (668)
T COG4946         427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA---YDFSPAFDPDGRYL  503 (668)
T ss_pred             EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc---cccCcccCCCCcEE
Confidence            99999987654433 578899999999999999       35679999998887664432221   33445566676666


Q ss_pred             EEe
Q 015198          190 ACP  192 (411)
Q Consensus       190 ~~~  192 (411)
                      .+-
T Consensus       504 YfL  506 (668)
T COG4946         504 YFL  506 (668)
T ss_pred             EEE
Confidence            543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.02  E-value=2.9e-06  Score=74.66  Aligned_cols=192  Identities=9%  Similarity=-0.034  Sum_probs=121.3

Q ss_pred             EeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEc-CCeEEEE-EcCeEEEEEcCCceeeEEEe
Q 015198           93 MLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS-RDRIVVV-LEHKIYVYSFVDLKLLHQIE  169 (411)
Q Consensus        93 ~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~dg~i~iwd~~~~~~~~~~~  169 (411)
                      ..|.+ ++.++++.-..     +.|..|+..+++. ..+.... ...+.+. +++.+++ ..+.+.++|+.+++......
T Consensus         5 p~~d~~~g~l~~~D~~~-----~~i~~~~~~~~~~-~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPG-----GRIYRVDPDTGEV-EVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEETTTTEEEEEETTT-----TEEEEEETTTTEE-EEEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEE
T ss_pred             eEEECCCCEEEEEEcCC-----CEEEEEECCCCeE-EEEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEee
Confidence            45665 56666665544     8999999777654 3344444 6677777 7777777 67778888998886655444


Q ss_pred             cc--C-CCcceEEEccCCCceEEEEecCCC-------CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEE-EEcCCC
Q 015198          170 TL--A-NLRGLCCLSHHSSTSVLACPGLQR-------GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLA-TASTRG  238 (411)
Q Consensus       170 ~~--~-~~~~~~~~~~~~~~~~l~~~g~~d-------g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~-s~s~dg  238 (411)
                      ..  . .......+..++++.+.+......       |.|..++..+ .+..+...-...+.|+|+|+++.|+ +-+..+
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-KVTVVADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-EEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-eEEEEecCcccccceEECCcchheeecccccc
Confidence            32  2 334555677777777554422111       4566555553 3444444455678999999999776 556667


Q ss_pred             eEEEEEECCCCce----EEEE-eCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          239 TLIRIFNTVDGTR----LQEV-RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       239 ~~I~vwd~~~~~~----~~~~-~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      . |..|++.....    ...+ ......+..-.+++..+|++.++....+.|.+++-+ |+
T Consensus       157 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~  215 (246)
T PF08450_consen  157 R-IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK  215 (246)
T ss_dssp             E-EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred             e-eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence            7 99999853221    1222 111122357889999999988887788899999977 54

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.01  E-value=9.6e-09  Score=90.73  Aligned_cols=155  Identities=16%  Similarity=0.133  Sum_probs=104.5

Q ss_pred             EEEcCCeEEEE---EcCeEEEEEcCC----ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEE
Q 015198          139 VKLSRDRIVVV---LEHKIYVYSFVD----LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL  211 (411)
Q Consensus       139 ~~~~~~~~~~~---~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~  211 (411)
                      +..++.+++++   .+....++++..    -+++........+..+.....+.. ..++-..+....+.+|.....+...
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~s-v~v~dkagD~~~~di~s~~~~~~~~  146 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTS-VLVADKAGDVYSFDILSADSGRCEP  146 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccce-EEEEeecCCceeeeeecccccCcch
Confidence            34455666666   233444444422    233333333333333333333322 2232223345555566555456667


Q ss_pred             EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          212 INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       212 ~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      +.+|-..++.++|+||+++|+++..|.. |||-....--.+..+.-+ |..-|..++.-++ +.|++++.|++|++||+.
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTDN-YLLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeeccC-ceeeecCCCCcEEEEecc
Confidence            7899999999999999999999999999 999888776666666655 8889999998764 668999999999999999


Q ss_pred             ccccCC
Q 015198          292 VRVVGE  297 (411)
Q Consensus       292 ~~~~~~  297 (411)
                      +|+...
T Consensus       224 sgk~L~  229 (390)
T KOG3914|consen  224 SGKLLD  229 (390)
T ss_pred             cCCccc
Confidence            999773

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=2.1e-07  Score=85.62  Aligned_cols=238  Identities=10%  Similarity=0.097  Sum_probs=152.3

Q ss_pred             CCeEEEEEcCCCCEEEEEe---C---------CcEEEEecCCCcceEEeecCCCCE-EEEEEeccCCeEEEEecCCCCCC
Q 015198           45 IELISVSWNQDYGCFAAGT---S---------CGFRIYNCEPFKETFRRDLKSGGF-RIVEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~---d---------g~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      ..|.-+.|||..+||++-+   .         ..+.|||+.++........-.... .-.-+.|+.|..+++--..    
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~----  325 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG----  325 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc----
Confidence            3588999999999999854   1         468999999865443322211222 2233567778877776554    


Q ss_pred             CCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--------EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc
Q 015198          112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH  182 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (411)
                        ..|.||+..+...+..-. ....|....|+|.+.+++        .-..+.+..+.+++.++.-..+.  +..+.+.|
T Consensus       326 --~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhW  401 (698)
T KOG2314|consen  326 --NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHW  401 (698)
T ss_pred             --ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEe
Confidence              689999966643332222 457889999999999998        12467788887777776665443  35677888


Q ss_pred             CCCceEEEEecC---------CCCeEEEEEcCCcceEE-EeccccceeEEEecCCCCEEEEEc--CCCeEEEEEECCCC-
Q 015198          183 HSSTSVLACPGL---------QRGQVRIEHFGLNMIKL-INAHDSHIACFTLTLDGLLLATAS--TRGTLIRIFNTVDG-  249 (411)
Q Consensus       183 ~~~~~~l~~~g~---------~dg~i~i~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s--~dg~~I~vwd~~~~-  249 (411)
                      ..+|.+|++--.         .-..+.|...+.+.+.. .-.-...|...+|-|.|..+++-+  .....+.+|.+++. 
T Consensus       402 Qk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~  481 (698)
T KOG2314|consen  402 QKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI  481 (698)
T ss_pred             ccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence            888888765211         11122222222221111 112356788899999998766533  22333889988732 


Q ss_pred             ---ceEEEEeCCCCCcceEEEEeCCCCCEEEEEe---CCCcEEEEEccccc
Q 015198          250 ---TRLQEVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTVHIFSLRVRV  294 (411)
Q Consensus       250 ---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~I~vwd~~~~~  294 (411)
                         +++..+.    ....+.+.|+|.|++++.+.   ..|.+.++|+....
T Consensus       482 ~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~  528 (698)
T KOG2314|consen  482 KKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD  528 (698)
T ss_pred             Cchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence               2333333    34578899999999988764   46789999998644

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=5e-07  Score=85.35  Aligned_cols=195  Identities=8%  Similarity=-0.013  Sum_probs=122.0

Q ss_pred             EEEEEeccCCeEE-EEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE------EcCeEEEEEcCC
Q 015198           89 RIVEMLFRCNILA-LVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVD  161 (411)
Q Consensus        89 ~~~~~~~~~~~~~-l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~dg~i~iwd~~~  161 (411)
                      ......|+|++.. ++..+.+.  ....|.++|+.+++........+......|+|||..++      .+..|+++|+.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~--~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGE--RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccC--CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            5667889998752 33222110  12689999998887766555666677788999997666      246799999887


Q ss_pred             ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC--
Q 015198          162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR--  237 (411)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d--  237 (411)
                      ++.. .+.....  ......++|++..|+++....+  .|++.+..+.....+......  ...|+|||++|+.....  
T Consensus       267 g~~~-~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~  341 (419)
T PRK04043        267 KTLT-QITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETN  341 (419)
T ss_pred             CcEE-EcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCC
Confidence            7643 3432222  1223356667777777655555  455555555544444322212  24899999988766543  


Q ss_pred             -------CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC---cEEEEEcccccc
Q 015198          238 -------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSLRVRVV  295 (411)
Q Consensus       238 -------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~  295 (411)
                             .. |.+.|+.+++.. .+...   .......|+|||+.|+....++   .+.+.+++...+
T Consensus       342 ~~~~~~~~~-I~v~d~~~g~~~-~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~  404 (419)
T PRK04043        342 NEFGKNTFN-LYLISTNSDYIR-RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS  404 (419)
T ss_pred             cccCCCCcE-EEEEECCCCCeE-ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence                   25 889999888653 34332   1233578999999887666443   366777765443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.98  E-value=7.3e-09  Score=106.62  Aligned_cols=194  Identities=10%  Similarity=0.169  Sum_probs=142.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      ..+-..|.++.=+|...+.++|+ ||.|++|.....+.+..... .+...+..+.|+.+|..+..+..|     |.+.+|
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~s~vtr~~f~~qGnk~~i~d~d-----g~l~l~ 2278 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGNSRVTRSRFNHQGNKFGIVDGD-----GDLSLW 2278 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCcchhhhhhhcccCCceeeeccC-----Cceeec
Confidence            34556788888899999999999 99999999987777665544 455888999999998888777777     999999


Q ss_pred             ECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCC--c-eeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD--L-KLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       120 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      ... .++....+ |.....++.|-.....-+    .++.+.+||.--  + .+++  ..|....++.++.  |+.++|+ 
T Consensus      2279 q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~--P~~qlli- 2352 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYA--PKHQLLI- 2352 (2439)
T ss_pred             ccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEc--CcceEEE-
Confidence            966 45555555 777788888776333333    578999999732  2 2333  6677644555544  4555555 


Q ss_pred             ecCCCCeEEEEEcCCcceE-EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          192 PGLQRGQVRIEHFGLNMIK-LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~~~~-~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      +|+.+|.|++|+...+.+. .++.         ++ ...++++|+..|. |+||++..-..++++..
T Consensus      2353 sggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             ecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence            5889999999998765432 2322         44 5568999999999 99999988887777764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.98  E-value=5.4e-09  Score=90.40  Aligned_cols=253  Identities=13%  Similarity=0.171  Sum_probs=156.0

Q ss_pred             CEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC-c----EEEEEe-e------------cCceeEEEEcCCeEE-
Q 015198           87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-R----CIGEFA-F------------RSDVRSVKLSRDRIV-  147 (411)
Q Consensus        87 ~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~-~----~~~~~~-~------------~~~i~~~~~~~~~~~-  147 (411)
                      ..-+.++-|...|.+|++|..+     |.|.++.-... +    ....++ |            ...|..+.|.+++.. 
T Consensus        25 adiis~vef~~~Ge~LatGdkg-----GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a   99 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKG-----GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA   99 (433)
T ss_pred             hcceeeEEeecccceEeecCCC-----CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence            3446677888999999999988     99999973322 1    112222 2            256888999887543 


Q ss_pred             --EE--EcCeEEEEEcCCceeeE--------------------EE--------------eccCCCcceEEEccCCCceEE
Q 015198          148 --VV--LEHKIYVYSFVDLKLLH--------------------QI--------------ETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       148 --~~--~dg~i~iwd~~~~~~~~--------------------~~--------------~~~~~~~~~~~~~~~~~~~~l  189 (411)
                        ++  .|.+|++|.+.......                    .+              ..+.+...+-+++.+.|...+
T Consensus       100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~  179 (433)
T KOG1354|consen  100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF  179 (433)
T ss_pred             EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence              22  79999999884321100                    00              111222344566777777777


Q ss_pred             EEecCCCCeEEEEEcCC--cc--eEEEecc-----ccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCce----EEEE
Q 015198          190 ACPGLQRGQVRIEHFGL--NM--IKLINAH-----DSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTR----LQEV  255 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~--~~--~~~~~~~-----~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~----~~~~  255 (411)
                      +++  .|=.|.+|....  +.  +.-++.+     ..-|++..|+|.. +.++..+..|. |++-|++...+    ...+
T Consensus       180 lSA--DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  180 LSA--DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             eec--cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeechhhhhhcchhhhh
Confidence            653  565666687653  11  2223333     3468889999865 57788888999 99999984321    0111


Q ss_pred             eCCCC----------CcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc-ccCCCCCCCCCCCCcccccccCCCCCccccC
Q 015198          256 RRGVD----------RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR-VVGEDSSSSLSTPSQSTELLNHSSSFDTLIS  324 (411)
Q Consensus       256 ~~~~~----------~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (411)
                      .....          -..|..+.|+++|+++++-.. -+|++||++-. ++.+....|                      
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh----------------------  313 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH----------------------  313 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh----------------------
Confidence            11101          136788999999999987543 46999999543 333322222                      


Q ss_pred             CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                 .++..-+...+..+-.|..|        -|+|+.+ ..+++|+....|++|.++.
T Consensus       314 -----------~~lr~kLc~lYEnD~IfdKF--------ec~~sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  314 -----------EYLRSKLCSLYENDAIFDKF--------ECSWSGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             -----------HhHHHHHHHHhhccchhhee--------EEEEcCCcceEecccccceEEEecCCC
Confidence                       22332333444444444443        4889887 7788888899999998664

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.96  E-value=4.1e-07  Score=82.25  Aligned_cols=185  Identities=12%  Similarity=0.137  Sum_probs=129.2

Q ss_pred             ccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec-------------Cce---eEEEEcCCeEEEE--EcCeEEE
Q 015198           95 FRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-------------SDV---RSVKLSRDRIVVV--LEHKIYV  156 (411)
Q Consensus        95 ~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~-------------~~i---~~~~~~~~~~~~~--~dg~i~i  156 (411)
                      .+.++..++-...      |.|.++|..+... ..+.-.             .+.   ...+.. +|.+++  ..|+..+
T Consensus       274 ~nsDGkrIvFq~~------GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSRGkaFi  345 (668)
T COG4946         274 ANSDGKRIVFQNA------GDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSRGKAFI  345 (668)
T ss_pred             cCCCCcEEEEecC------CcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccC-CCcEEEEEecCcEEE
Confidence            3456665555433      8999999766432 222200             011   111122 344444  7888888


Q ss_pred             EEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC-eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEc
Q 015198          157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG-QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS  235 (411)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg-~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s  235 (411)
                      .+...+-.++.  ++...+....+..++++  ++. |..|| .+-|++..+..++.+...-+.|.++..+++|++++.+.
T Consensus       346 ~~~~~~~~iqv--~~~~~VrY~r~~~~~e~--~vi-gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN  420 (668)
T COG4946         346 MRPWDGYSIQV--GKKGGVRYRRIQVDPEG--DVI-GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN  420 (668)
T ss_pred             ECCCCCeeEEc--CCCCceEEEEEccCCcc--eEE-eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc
Confidence            88655544432  23334566666666664  333 55777 78889999999999999999999999999999999999


Q ss_pred             CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC----cEEEEEcccccc
Q 015198          236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG----TVHIFSLRVRVV  295 (411)
Q Consensus       236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg----~I~vwd~~~~~~  295 (411)
                      .... |.+.|+.+|.....-+.  ..+-|+.+.|+|++++||-+--+|    .|+++|+.+++.
T Consensus       421 dr~e-l~vididngnv~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         421 DRFE-LWVIDIDNGNVRLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             CceE-EEEEEecCCCeeEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            8888 99999999986533232  567899999999999999876665    699999998764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.94  E-value=6.5e-06  Score=72.44  Aligned_cols=212  Identities=14%  Similarity=0.084  Sum_probs=134.2

Q ss_pred             EEEEcC-CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEecc-CCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           49 SVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        49 ~l~~s~-~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      ++.|.+ ++.++++.. .+.|..|+.++.... ...+ ..   ...+.+. +++.++++..       +.+.++|..+++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~-~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDL-PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGK   71 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEES-SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTTE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEec-CC---CceEEEEccCCEEEEEEc-------CceEEEecCCCc
Confidence            578998 566666665 898999998874432 2333 22   4455555 6677777754       455666988886


Q ss_pred             EEEEEee------cCceeEEEEcCCeEEEEE---------c--CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198          126 CIGEFAF------RSDVRSVKLSRDRIVVVL---------E--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       126 ~~~~~~~------~~~i~~~~~~~~~~~~~~---------d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                      .......      ....+.+++.++|.+.+.         .  |.|+.++.. ++.......- .  ..-.+.+++++..
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-~--~pNGi~~s~dg~~  147 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-G--FPNGIAFSPDGKT  147 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-S--SEEEEEEETTSSE
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-c--cccceEECCcchh
Confidence            5544442      346788999999987771         1  668888876 5544443332 2  2334555556666


Q ss_pred             EEEecCCCCeEEEEEcC--Ccc---eEEE-ecc--ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC
Q 015198          189 LACPGLQRGQVRIEHFG--LNM---IKLI-NAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD  260 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~--~~~---~~~~-~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~  260 (411)
                      |+++-+..+.|..++..  ...   ...+ ...  .+..-.+++..+|++.++....+. |.++|.+ |+.+..+...  
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p--  223 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELP--  223 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-S--
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCC--
Confidence            66556677777775543  221   1222 222  234778999999998887777888 9999975 9998888864  


Q ss_pred             CcceEEEEeC-CCCCEEEEEe
Q 015198          261 RAEIYSIALS-PNVQWLAVAS  280 (411)
Q Consensus       261 ~~~v~~l~~s-pdg~~l~s~s  280 (411)
                      ...+++++|. ++.+.|+..+
T Consensus       224 ~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  224 VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SSSEEEEEEESTTSSEEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEe
Confidence            3479999994 6766665443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.93  E-value=1.1e-07  Score=80.72  Aligned_cols=179  Identities=13%  Similarity=0.076  Sum_probs=115.3

Q ss_pred             CeEEEEECCCCcEEE--EEe--ecCceeEEEEcC---CeE-EEE---EcCeEEEEEcCCceeeEEEecc---CCCc-ceE
Q 015198          114 TKVIIWDDHQSRCIG--EFA--FRSDVRSVKLSR---DRI-VVV---LEHKIYVYSFVDLKLLHQIETL---ANLR-GLC  178 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~--~~~--~~~~i~~~~~~~---~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~---~~~~-~~~  178 (411)
                      |.+.++++...+.+.  +++  ....+..+.|..   ++. .++   ..|.|.+|..........+.+-   .-.+ ...
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l  125 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL  125 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence            677777766654433  222  344556666642   333 222   6788888876543333333221   1111 234


Q ss_pred             EEccCCCceEEEEecCCCCeEEE-EEcC--CcceEEEeccccceeEEEecCC-CCEEEEEcCCCeEEEEEECC-CCceEE
Q 015198          179 CLSHHSSTSVLACPGLQRGQVRI-EHFG--LNMIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTV-DGTRLQ  253 (411)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~i~i-~~~~--~~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~-~~~~~~  253 (411)
                      ++.++..+.-+++ +..+|.+.+ +...  .+.++..+.|+.+++...|+.. .+++.+|+.|+. +..||++ .++.+.
T Consensus       126 slD~~~~~~~i~v-s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  126 SLDISTSGTKIFV-SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIPKTFIW  203 (339)
T ss_pred             EEEeeccCceEEE-EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCCcceee
Confidence            4555555555554 567888875 3322  3455688999999999999853 368899999999 9999998 344443


Q ss_pred             EEeCCCCCcceEEEEeCC-CCCEEEEEeCCCcEEEEEcccccc
Q 015198          254 EVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       254 ~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      .- ...|...|.+|.-+| .+.+|++|+.|..|++||.++-.+
T Consensus       204 ~n-~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k  245 (339)
T KOG0280|consen  204 HN-SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK  245 (339)
T ss_pred             ec-ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence            31 222777899998885 677999999999999999996543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.91  E-value=4.2e-06  Score=73.54  Aligned_cols=238  Identities=18%  Similarity=0.178  Sum_probs=148.7

Q ss_pred             CeEEEEEcC-CCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           46 ELISVSWNQ-DYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        46 ~V~~l~~s~-~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      ....++.+| ....++.+.  .....+||..+.+......-..+....=.-.|++++.+|.+...|.....|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            345678888 456666777  44567899887665544432223333334678999999988877755567999999988


Q ss_pred             -CCcEEEEEe-ecCceeEEEEcCCeE-EEEE--------------------cCeEEEEEcCCceeeEEEec--cCCCcce
Q 015198          123 -QSRCIGEFA-FRSDVRSVKLSRDRI-VVVL--------------------EHKIYVYSFVDLKLLHQIET--LANLRGL  177 (411)
Q Consensus       123 -~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~--------------------dg~i~iwd~~~~~~~~~~~~--~~~~~~~  177 (411)
                       +.+.+.++. +.-.-..+.+.||+. +++.                    +..+...|..+|+++.+...  ..+...+
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             567777776 555566788999994 4432                    23455566677887776544  2233355


Q ss_pred             EEEccCCCceEEEEecCCCC-------eEEEEEcCCcceEEEe-------ccccceeEEEecCCCCEEEEEcCCCeEEEE
Q 015198          178 CCLSHHSSTSVLACPGLQRG-------QVRIEHFGLNMIKLIN-------AHDSHIACFTLTLDGLLLATASTRGTLIRI  243 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg-------~i~i~~~~~~~~~~~~-------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (411)
                      ..++.++++..++. .-..|       .|.++... ..+..+.       .-...+-+|+++++|.++++.+-.|..+.+
T Consensus       166 RHLa~~~~G~V~~a-~Q~qg~~~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  166 RHLAVDGDGTVAFA-MQYQGDPGDAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eeEEecCCCcEEEE-EecCCCCCccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            55666665544332 21111       11112221 2222222       234678899999999988877776655999


Q ss_pred             EECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      ||..+++.+.....    ..+..++-.+++ ++++ +..|.  ++.+...
T Consensus       244 ~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~s-sG~G~--~~~~~~~  285 (305)
T PF07433_consen  244 WDAATGRLLGSVPL----PDACGVAPTDDG-FLVS-SGQGQ--LIRLSPD  285 (305)
T ss_pred             EECCCCCEeecccc----CceeeeeecCCc-eEEe-CCCcc--EEEccCc
Confidence            99999998866654    247778877776 4544 44454  4444433

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.91  E-value=3.6e-07  Score=76.77  Aligned_cols=238  Identities=13%  Similarity=0.083  Sum_probs=145.5

Q ss_pred             EEEEcCC-----CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEe-ccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           49 SVSWNQD-----YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEML-FRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        49 ~l~~s~~-----g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      .+.|-|-     ..+||.|+ .|.+.+|...+.+..... ...+...+.-.. +.....-+.-++.|     .++++.++
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~-cd~snn~v~~~~r~cd~~~~~~i~snd-----ht~k~~~~  145 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQ-CDVSNNDVTLVKRYCDLKFPLNIASND-----HTGKTMVV  145 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceee-ecccccchhhhhhhcccccceeeccCC-----cceeEEEE
Confidence            4555553     34788887 999999999875543332 212222111111 11111122233333     77777775


Q ss_pred             CCCcEEEEEeec-CceeEEEEcCCeEEEE---EcCeEEEEEcCC-ceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          122 HQSRCIGEFAFR-SDVRSVKLSRDRIVVV---LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       122 ~~~~~~~~~~~~-~~i~~~~~~~~~~~~~---~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      .-+......... -.+.++.+++|+++.+   ....|..|.+.. ++.+..+..........+.+++.....+|+ +..|
T Consensus       146 ~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv-~~Qd  224 (344)
T KOG4532|consen  146 SGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV-VFQD  224 (344)
T ss_pred             ecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE-EecC
Confidence            544333222221 3488999999999988   456788888843 333333333333334556666666666665 7799


Q ss_pred             CeEEEEEcCCc------ceEEEeccccceeEEEecCCCC--EEEEEcCCCeEEEEEECCCCceEEEEeCCCC------Cc
Q 015198          197 GQVRIEHFGLN------MIKLINAHDSHIACFTLTLDGL--LLATASTRGTLIRIFNTVDGTRLQEVRRGVD------RA  262 (411)
Q Consensus       197 g~i~i~~~~~~------~~~~~~~~~~~i~~l~~sp~g~--~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~------~~  262 (411)
                      |.+.||+.+.-      ....-..|.+.+..+.|++.|.  +|+..-.-+. +.+.|+++++..+.+.....      ..
T Consensus       225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~I~i~~d~~~~~~tq  303 (344)
T KOG4532|consen  225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQVIVIPDDVERKHNTQ  303 (344)
T ss_pred             CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeEEecCcccccccccc
Confidence            99999887642      1222346899999999998774  5666666677 99999999876555443211      13


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      .|..-.|+.++.-+.+.+++. +.-|++.+...
T Consensus       304 ~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srsR  335 (344)
T KOG4532|consen  304 HIFGTNFNNENESNDVKNELQ-GAEYNILSRSR  335 (344)
T ss_pred             ccccccccCCCcccccccchh-hheeeccccce
Confidence            477888888888777776664 67777776554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=4.4e-06  Score=78.99  Aligned_cols=172  Identities=12%  Similarity=0.011  Sum_probs=108.0

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEE-EE----E--cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIV-VV----L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~----~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                      ..|.+-|..... .+.+.....+....|+||+.. ++    .  +..|+++|+.+++...... ...  ......++|++
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g--~~~~~~~SPDG  244 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG--MLVVSDVSKDG  244 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC--cEEeeEECCCC
Confidence            577777754433 444443347788999999974 44    2  4679999998876654443 222  22334456677


Q ss_pred             eEEEEecCCC--CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC-Ce-EEEEEECCCCceEEEEeCCCCCc
Q 015198          187 SVLACPGLQR--GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-GT-LIRIFNTVDGTRLQEVRRGVDRA  262 (411)
Q Consensus       187 ~~l~~~g~~d--g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g~-~I~vwd~~~~~~~~~~~~~~~~~  262 (411)
                      ..|+++.+.+  ..|++.+..+.....+..+........|+|||+.|+..+.. +. .|++.|+.+++.......+ .  
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~--  321 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K--  321 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C--
Confidence            6666654444  45666565566666666555444566899999977765533 21 2888899887764333221 1  


Q ss_pred             ceEEEEeCCCCCEEEEEeCC---------CcEEEEEccccc
Q 015198          263 EIYSIALSPNVQWLAVASDK---------GTVHIFSLRVRV  294 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~d---------g~I~vwd~~~~~  294 (411)
                        ....|+|||++|+.....         ..|.+.|+++++
T Consensus       322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence              124899999998876643         257777877765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.89  E-value=4.8e-08  Score=83.57  Aligned_cols=236  Identities=14%  Similarity=0.169  Sum_probs=134.1

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc---eEEeecCCCCE------------EEEEEeccC---Ce
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE---TFRRDLKSGGF------------RIVEMLFRC---NI   99 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~---~~~~~~~~~~~------------~~~~~~~~~---~~   99 (411)
                      ......+.|+++.|...|.||++|. .|.|.+|.-+....   .+..+++.|..            .+..+.|..   ..
T Consensus        21 ~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~  100 (460)
T COG5170          21 NSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN  100 (460)
T ss_pred             ccccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence            3445667899999999999999999 89999998764331   11122323322            233333332   23


Q ss_pred             EEEEecCCCCCCCCCeEEEEECCCCcE--EEEEee--------cCceeEEEEcCCeEEEE----EcCeEEEEEcCCceee
Q 015198          100 LALVGAGDNSQYPPTKVIIWDDHQSRC--IGEFAF--------RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLL  165 (411)
Q Consensus       100 ~~l~s~~~d~~~~d~~i~vwd~~~~~~--~~~~~~--------~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~  165 (411)
                      .+++++.+      .+|++|.+.....  +..-..        .+++++.    ....+-    .|..|....       
T Consensus       101 hFLlstNd------ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~----~~l~lprls~hd~iiaa~p-------  163 (460)
T COG5170         101 HFLLSTND------KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST----KELLLPRLSEHDEIIAAKP-------  163 (460)
T ss_pred             eEEEecCC------ceeeeeeeecccchhhhccccccccccccCCCcCCH----HHhhcccccccceEEEecc-------
Confidence            45555544      9999999755422  111111        1222111    111110    111111111       


Q ss_pred             EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc----ceEEEeccc-----cceeEEEecCCC-CEEEEEc
Q 015198          166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN----MIKLINAHD-----SHIACFTLTLDG-LLLATAS  235 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~-----~~i~~l~~sp~g-~~l~s~s  235 (411)
                      ..+....++..+-+++++.+...++++  .|=.|.+|.....    .+..++.|.     .-|++..|+|.. ..+...+
T Consensus       164 ~rvyaNaH~yhiNSiS~NsD~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs  241 (460)
T COG5170         164 CRVYANAHPYHINSISFNSDKETLLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS  241 (460)
T ss_pred             ceeccccceeEeeeeeecCchheeeec--cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence            111222233355567777777777653  5656666876531    233344443     458888999865 4667778


Q ss_pred             CCCeEEEEEECCCCc------eEEEE--eCCC------CCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          236 TRGTLIRIFNTVDGT------RLQEV--RRGV------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       236 ~dg~~I~vwd~~~~~------~~~~~--~~~~------~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      ..|. |++-|++...      .+...  .+-.      -...|..+.|+++|+++++-.. -+|+|||++..+.
T Consensus       242 SkG~-Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~  313 (460)
T COG5170         242 SKGE-IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN  313 (460)
T ss_pred             CCCc-EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence            8899 9999998431      11111  1100      1236788999999999987654 4699999987653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.87  E-value=1.9e-06  Score=78.72  Aligned_cols=237  Identities=12%  Similarity=0.067  Sum_probs=154.1

Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCC-CCEEEEEEeccCC--eEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCN--ILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        49 ~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      -+.|+.+.+++|--....+.|+++.. . .....++. ....+..+.++|.  ...++.-.-.....++.+++|.+..+.
T Consensus       136 ~~k~s~~D~y~ARvv~~sl~i~e~t~-n-~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s  213 (561)
T COG5354         136 VLKFSIDDKYVARVVGSSLYIHEITD-N-IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS  213 (561)
T ss_pred             eeeeeecchhhhhhccCeEEEEecCC-c-cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence            67788888777755567788888621 1 11111211 2356777777775  222333222222345899999998888


Q ss_pred             EEEEEe-ecCceeEEEEcCCeEEEE--------------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          126 CIGEFA-FRSDVRSVKLSRDRIVVV--------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       126 ~~~~~~-~~~~i~~~~~~~~~~~~~--------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      .+.+.. ++..=..+.|++.|.+++              ....++++++.... +.....-.+++...+|.+..++ +.+
T Consensus       214 ~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~-F~v  291 (561)
T COG5354         214 VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSR-FAV  291 (561)
T ss_pred             eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCc-eeE
Confidence            777766 555556788998887776              13678888886332 2222233455556666666654 334


Q ss_pred             EecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEE-EEeCCCCCcceEE
Q 015198          191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQ-EVRRGVDRAEIYS  266 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~-~~~~~~~~~~v~~  266 (411)
                      ++|..+-.+.+.+.+++....+  ....=+.+.|+|.+++++.++-|   |. |.+||........ .+.+.    ...-
T Consensus       292 i~g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~~~~~~----n~s~  364 (561)
T COG5354         292 ISGYMPASVSVFDLRGNLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAGAFNGL----NTSY  364 (561)
T ss_pred             EecccccceeecccccceEEec--CCcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEEEeecC----CceE
Confidence            5577888888888888744433  34455678899999999987655   66 9999976554433 55542    3455


Q ss_pred             EEeCCCCCEEEEEe------CCCcEEEEEccccccC
Q 015198          267 IALSPNVQWLAVAS------DKGTVHIFSLRVRVVG  296 (411)
Q Consensus       267 l~~spdg~~l~s~s------~dg~I~vwd~~~~~~~  296 (411)
                      +.|+||++++.+..      .|..|.|||+.....-
T Consensus       365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             eeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence            78999999988764      3778999999876543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=2.6e-07  Score=88.28  Aligned_cols=235  Identities=11%  Similarity=0.137  Sum_probs=157.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccC------------CeEEEEecCCCCCCCC
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC------------NILALVGAGDNSQYPP  113 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~s~~~d~~~~d  113 (411)
                      .-.++.|+|.| +||.|+...|.+-|..+.+.+...+  .|...+..+.|.|            ....+++++..     
T Consensus        17 N~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~-----   88 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS-----   88 (1062)
T ss_pred             cccccccCccc-eEEEecCceEEEEehhhhhhhhccc--cCccceeEEEeccCCCchhccCccccceeEEecccc-----
Confidence            35678899877 8999998889999988766665555  4556666666543            13456777766     


Q ss_pred             CeEEEEECCCCcEEEEEe-ecCceeEEEEcC---Ce--EEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC-
Q 015198          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSR---DR--IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS-  184 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~---~~--~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-  184 (411)
                      |.|.+||...+..+..+. +..++..++|-+   +.  .+++  .-..+.+|+..+|+.+..+.......  .+|..+| 
T Consensus        89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL--s~f~~DPf  166 (1062)
T KOG1912|consen   89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL--SCFRVDPF  166 (1062)
T ss_pred             CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce--eeeeeCCC
Confidence            999999999998888888 678888888865   23  2222  57889999999999988776555533  3444443 


Q ss_pred             CceEEEEecCCCCeEEE-EEcCC-------cceEEEecccc-------------------------ceeEEEecCCCCEE
Q 015198          185 STSVLACPGLQRGQVRI-EHFGL-------NMIKLINAHDS-------------------------HIACFTLTLDGLLL  231 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i-~~~~~-------~~~~~~~~~~~-------------------------~i~~l~~sp~g~~l  231 (411)
                      +...+...| ..|.+.+ .+...       +..+.-..|..                         ....++|+|.-+.+
T Consensus       167 d~rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~  245 (1062)
T KOG1912|consen  167 DSRHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI  245 (1062)
T ss_pred             CcceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence            223444445 4666666 33221       22222222221                         01235667766544


Q ss_pred             EEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC--EEEEEeCCCcEEEEEccccc
Q 015198          232 ATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       232 ~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~I~vwd~~~~~  294 (411)
                      +-...... +.|+|++-..++..+..  ..+.+.-+.+-|+++  .|++.-.||.+.+|-.+.-.
T Consensus       246 lfi~~pre-llv~dle~~~~l~vvpi--er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~  307 (1062)
T KOG1912|consen  246 LFITFPRE-LLVFDLEYECCLAVVPI--ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP  307 (1062)
T ss_pred             EEEEeccc-eEEEcchhhceeEEEEe--ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence            44455666 99999988888887776  445555667777654  68899999999999776543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.81  E-value=3.9e-06  Score=79.34  Aligned_cols=223  Identities=11%  Similarity=0.029  Sum_probs=125.1

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~  134 (411)
                      +..++++. ++.+.-+|.++++...+..+.. .. ....... ++.+++... +     +.|..+|.++|+.+..+....
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~-~ssP~v~-~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~  190 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EA-LSRPVVS-DGLVLVHTS-N-----GMLQALNESDGAVKWTVNLDV  190 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ce-ecCCEEE-CCEEEEECC-C-----CEEEEEEccCCCEeeeecCCC
Confidence            34566666 8899999999888887776522 11 1111111 344555433 3     899999999999998876432


Q ss_pred             ce------eEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCC--cc-----eEEEccCCCceEEEEecCCCCeEE
Q 015198          135 DV------RSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANL--RG-----LCCLSHHSSTSVLACPGLQRGQVR  200 (411)
Q Consensus       135 ~i------~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~l~~~g~~dg~i~  200 (411)
                      +.      .+.....+..++. .++.+..+|..+|+.+.........  ..     .....|--.+..+++ ++.+|.+.
T Consensus       191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~-~~~~g~l~  269 (394)
T PRK11138        191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA-LAYNGNLV  269 (394)
T ss_pred             CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE-EEcCCeEE
Confidence            21      1112223333333 6889999999999877655321110  00     000111001122333 33566666


Q ss_pred             EEE-cCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE
Q 015198          201 IEH-FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (411)
Q Consensus       201 i~~-~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (411)
                      ..+ .+++.+-....  .....+.  ..+..|+.++.+|. +..+|..+|+.+.......+ ....+...  .+..|+.+
T Consensus       270 ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v~  341 (394)
T PRK11138        270 ALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVVG  341 (394)
T ss_pred             EEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEEE
Confidence            633 34444332221  1111122  24567777888999 99999999987654432101 11122222  24567889


Q ss_pred             eCCCcEEEEEccccccC
Q 015198          280 SDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       280 s~dg~I~vwd~~~~~~~  296 (411)
                      +.||.|++.|..+|+..
T Consensus       342 ~~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        342 DSEGYLHWINREDGRFV  358 (394)
T ss_pred             eCCCEEEEEECCCCCEE
Confidence            99999999999988743

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.81  E-value=2.2e-06  Score=74.94  Aligned_cols=215  Identities=17%  Similarity=0.154  Sum_probs=130.4

Q ss_pred             CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEE-EEc
Q 015198           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSV-KLS  142 (411)
Q Consensus        64 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~-~~~  142 (411)
                      +|.|..||..+++.+....+..............++.+++.. .+     +.|..||..+|+.+..+.....+... ...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-~~-----~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-GD-----GNLYALDAKTGKVLWRFDLPGPISGAPVVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-TT-----SEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-CC-----CEEEEEECCCCCEEEEeeccccccceeeec
Confidence            578888998888888887763222222222222344444443 33     99999999999999988854443332 444


Q ss_pred             CCeEEEE-EcCeEEEEEcCCceeeEEE-eccCCCc---ceEEEccCCCceEEEEecCCCCeEEEEE-cCCcceEEEeccc
Q 015198          143 RDRIVVV-LEHKIYVYSFVDLKLLHQI-ETLANLR---GLCCLSHHSSTSVLACPGLQRGQVRIEH-FGLNMIKLINAHD  216 (411)
Q Consensus       143 ~~~~~~~-~dg~i~iwd~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~~~~  216 (411)
                      .+..++. .++.|+.+|..+|+.+... .......   .........  ..+++ +..++.|...+ .+++.+.......
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG--DRLYV-GTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET--TEEEE-EETCSEEEEEETTTTEEEEEEESST
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec--CEEEE-EeccCcEEEEecCCCcEEEEeecCC
Confidence            4444444 5789999999999999884 3321111   112222222  33433 33477787755 5566666665533


Q ss_pred             cc----------e-eEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcE
Q 015198          217 SH----------I-ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV  285 (411)
Q Consensus       217 ~~----------i-~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I  285 (411)
                      ..          + ..+.+ .++ .++.++.++..+.+ |+.+++.+.....  +  .+..+ ...++..|+.++.++.|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~~--~--~~~~~-~~~~~~~l~~~~~~~~l  224 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVI-SDG-RVYVSSGDGRVVAV-DLATGEKLWSKPI--S--GIYSL-PSVDGGTLYVTSSDGRL  224 (238)
T ss_dssp             T-SS--EEEETTEEEEEEC-CTT-EEEEECCTSSEEEE-ETTTTEEEEEECS--S---ECEC-EECCCTEEEEEETTTEE
T ss_pred             CCCCcceeeecccccceEE-ECC-EEEEEcCCCeEEEE-ECCCCCEEEEecC--C--CccCC-ceeeCCEEEEEeCCCEE
Confidence            22          1 22333 345 67777777752555 9999997643321  1  23221 34677788888899999


Q ss_pred             EEEEcccccc
Q 015198          286 HIFSLRVRVV  295 (411)
Q Consensus       286 ~vwd~~~~~~  295 (411)
                      ..||+++|+.
T Consensus       225 ~~~d~~tG~~  234 (238)
T PF13360_consen  225 YALDLKTGKV  234 (238)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEECCCCCE
Confidence            9999999975

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.80  E-value=3.7e-07  Score=86.50  Aligned_cols=228  Identities=11%  Similarity=0.030  Sum_probs=147.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      +.++||.+.|..+.|+...+.|.+.. +|-|.+|-+-.+.......-......+.++.|..+|..+.-.-.|     |.|
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD-----Gav  139 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYED-----GAV  139 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc-----CCE
Confidence            36899999999999999999999988 999999998765543333223456778899999988777766555     888


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc-------eeeEEEec----cCCCcceEEEc
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-------KLLHQIET----LANLRGLCCLS  181 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~-------~~~~~~~~----~~~~~~~~~~~  181 (411)
                      .|=.++.++ +.--. .......+.|++|...+.   .+|.+++||.+..       .+.....+    ....+...++.
T Consensus       140 IVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~  218 (1189)
T KOG2041|consen  140 IVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN  218 (1189)
T ss_pred             EEEeeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence            776654433 22111 122344678999987766   7899999997431       11111110    11111112221


Q ss_pred             -----c-CCCceEEEEecCCCCeEEE-EEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCe--------EEEEEE
Q 015198          182 -----H-HSSTSVLACPGLQRGQVRI-EHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGT--------LIRIFN  245 (411)
Q Consensus       182 -----~-~~~~~~l~~~g~~dg~i~i-~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~--------~I~vwd  245 (411)
                           + -|+...+++ +..+|.+.| -..+ ..++.. . ..-.+..+.|+++|..||.++.+..        .|.+|.
T Consensus       219 ~g~~~~v~pdrP~lav-cy~nGr~QiMR~eND~~Pvv~-d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys  295 (1189)
T KOG2041|consen  219 TGPYQPVPPDRPRLAV-CYANGRMQIMRSENDPEPVVV-D-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS  295 (1189)
T ss_pred             cCccccCCCCCCEEEE-EEcCceehhhhhcCCCCCeEE-e-cccEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence                 1 235556665 567888888 2222 233322 2 2367888999999999999886531        266665


Q ss_pred             CCCCceEEEEeCCCCCcceEEEEeCCCCCEEE
Q 015198          246 TVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA  277 (411)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  277 (411)
                       .-|+.+.+++.  ....|++++|-..|-.+|
T Consensus       296 -p~G~i~gtlkv--pg~~It~lsWEg~gLriA  324 (1189)
T KOG2041|consen  296 -PYGHIVGTLKV--PGSCITGLSWEGTGLRIA  324 (1189)
T ss_pred             -cchhheEEEec--CCceeeeeEEcCCceEEE
Confidence             46777888876  556888888876554443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=1.1e-08  Score=93.77  Aligned_cols=202  Identities=15%  Similarity=0.174  Sum_probs=142.5

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC-------CcEEEEEe-ecCceeEEEEcCCeEEEE-EcCe
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-------SRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHK  153 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~-------~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~  153 (411)
                      +.+|...+..+.--.+..-+++++.|     .+|++|.++.       ..+..+++ |+.+|.++.|-.+.+.++ .|+.
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkD-----KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g  805 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKD-----KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG  805 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCC-----ceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc
Confidence            34555556665555666778888887     9999999653       23445555 899999999999998888 8999


Q ss_pred             EEEEEcCCceeeEEEec--cCCCcceEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEEE-----eccccceeEEEec
Q 015198          154 IYVYSFVDLKLLHQIET--LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLI-----NAHDSHIACFTLT  225 (411)
Q Consensus       154 i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~-----~~~~~~i~~l~~s  225 (411)
                      |++||.--++++.++..  .......+..-++-+..++++.++...+|++.+. ...-...+     .+.++.+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            99999877777654422  1222233333344344555554577889999544 33333333     3445678999999


Q ss_pred             CCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEE-EEcccc
Q 015198          226 LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI-FSLRVR  293 (411)
Q Consensus       226 p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~v-wd~~~~  293 (411)
                      +.|+.++.+-.+|. |.+.|.++|+.+..++.  .+.....++ .|..+.|+....|.++.| |..-.|
T Consensus       886 ~~GN~lAa~LSnGc-i~~LDaR~G~vINswrp--mecdllqla-apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGC-IAILDARNGKVINSWRP--MECDLLQLA-APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             cCcchhhHHhcCCc-EEEEecCCCceeccCCc--ccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence            99999999999999 99999999999887765  333444444 366677888888888888 866554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=8.7e-08  Score=85.94  Aligned_cols=245  Identities=11%  Similarity=0.019  Sum_probs=166.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCC-CcceEEeecCCCCEEEEEEeccCCeEEEEecCC-CCCCCCCeEEEE
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNILALVGAGD-NSQYPPTKVIIW  119 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~~~d~~i~vw  119 (411)
                      |.+.|+.+.-.. .+++.+++ ||.++.|.-.. ....+...++.|-..+..+..+-++..+.+.+. |     ..++++
T Consensus         8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~D-----hs~Kvf   81 (558)
T KOG0882|consen    8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPD-----HSVKVF   81 (558)
T ss_pred             ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcc-----cceeEE
Confidence            677777765543 56888899 99999998664 333444555566666777777888888888666 6     999999


Q ss_pred             ECCCCcEEEEEee---cCceeEEEEcCC-e--EEEE---EcCeEEEEEcCCce--eeEEEeccCCCcceEEEccCCCceE
Q 015198          120 DDHQSRCIGEFAF---RSDVRSVKLSRD-R--IVVV---LEHKIYVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       120 d~~~~~~~~~~~~---~~~i~~~~~~~~-~--~~~~---~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                      |+++-..+..++.   ++.+..+ .++. -  .+.+   .++.+.++|-....  ....-..|..++....+.+..+.  
T Consensus        82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds--  158 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS--  158 (558)
T ss_pred             EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc--
Confidence            9888776655552   3333222 2222 1  2222   68999999975432  22333557777776666666552  


Q ss_pred             EEEecCCCCeEEEEEcCC---cc-------------eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE
Q 015198          189 LACPGLQRGQVRIEHFGL---NM-------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL  252 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~---~~-------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~  252 (411)
                      + .+....|.|.-|...+   .+             +..+........++.|+|+|..+.+-+.|.. |+++++++|+.+
T Consensus       159 ~-vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtGklv  236 (558)
T KOG0882|consen  159 A-VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTGKLV  236 (558)
T ss_pred             e-eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccchhh
Confidence            3 3466678898898774   00             1112234556789999999999999999999 999999998766


Q ss_pred             EEEeCC-------------------------------CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 015198          253 QEVRRG-------------------------------VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDS  299 (411)
Q Consensus       253 ~~~~~~-------------------------------~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~  299 (411)
                      +.+...                               .....-+.+.|...|++|+-++-=| |+|.++.++...+.+
T Consensus       237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence            554320                               0112335678888999999999888 999999999876533

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.75  E-value=1.2e-05  Score=84.61  Aligned_cols=195  Identities=10%  Similarity=0.084  Sum_probs=116.2

Q ss_pred             EeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec---------------CceeEEEEcCCeE--EEE--EcC
Q 015198           93 MLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR---------------SDVRSVKLSRDRI--VVV--LEH  152 (411)
Q Consensus        93 ~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~---------------~~i~~~~~~~~~~--~~~--~dg  152 (411)
                      +..++ ++.++++....     +.|++||.. ++.+..+...               .....+++++++.  +++  .++
T Consensus       573 vavd~~~g~lyVaDs~n-----~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~  646 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNH-----NRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH  646 (1057)
T ss_pred             EEEECCCCeEEEEECCC-----CeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence            34443 45555665555     899999964 5554444311               1347788888754  333  457


Q ss_pred             eEEEEEcCCceeeEEEeccC--------C-------CcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEecc--
Q 015198          153 KIYVYSFVDLKLLHQIETLA--------N-------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH--  215 (411)
Q Consensus       153 ~i~iwd~~~~~~~~~~~~~~--------~-------~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~--  215 (411)
                      .|+++|+.++. +..+.+..        .       -.....+++++++..+.++...++.|++|+.....+..+.+.  
T Consensus       647 ~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~  725 (1057)
T PLN02919        647 ALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY  725 (1057)
T ss_pred             eEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence            79999987654 33332110        0       001123444553333444455678888887765544443221  


Q ss_pred             -------------ccceeEEEecCCCCEEE-EEcCCCeEEEEEECCCCceEEEEeC-----------CCC--------Cc
Q 015198          216 -------------DSHIACFTLTLDGLLLA-TASTRGTLIRIFNTVDGTRLQEVRR-----------GVD--------RA  262 (411)
Q Consensus       216 -------------~~~i~~l~~sp~g~~l~-s~s~dg~~I~vwd~~~~~~~~~~~~-----------~~~--------~~  262 (411)
                                   -.....|+++|+|+.|+ +-+.++. |++||+.++.......+           +..        -.
T Consensus       726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~  804 (1057)
T PLN02919        726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ  804 (1057)
T ss_pred             cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence                         12345699999998555 4455677 99999987654211100           000        11


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      ....++++++|+++++-..++.|++||..++..
T Consensus       805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v  837 (1057)
T PLN02919        805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV  837 (1057)
T ss_pred             CCceeeEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence            346889999999888888899999999987754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.73  E-value=8.2e-07  Score=82.44  Aligned_cols=146  Identities=11%  Similarity=0.054  Sum_probs=118.6

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ec
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FR  133 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~  133 (411)
                      ...++-|. .|.|.+|+...++......-..|...+.++.++.+...+-+++.|     +.+..|+....+.++... .+
T Consensus        70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad-----~~v~~~~~~~~~~~~~~~~~~  144 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGAD-----LKVVYILEKEKVIIRIWKEQK  144 (541)
T ss_pred             ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCc-----eeEEEEecccceeeeeeccCC
Confidence            34677788 999999999987766666555788888889999998899999888     999999999999999988 67


Q ss_pred             CceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccC--C-CceEEEEecCCCCeEEEEEcCC
Q 015198          134 SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH--S-STSVLACPGLQRGQVRIEHFGL  206 (411)
Q Consensus       134 ~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~g~~dg~i~i~~~~~  206 (411)
                      ..+.+++++||+..++ ..+.|++||+++++.+..|.+|..++..+.|...  + .|.++..+...+..+.+|....
T Consensus       145 ~~~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  145 PLVSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CccceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            8899999999998888 8899999999999999999999998887777655  2 1445555444444555576554

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.71  E-value=1.7e-07  Score=88.99  Aligned_cols=240  Identities=11%  Similarity=0.094  Sum_probs=150.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC---eEEEEecCCCCCCCCCeEEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN---ILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~~~d~~i~v  118 (411)
                      .-.+.+.++.++|.|+-+|.++.-.+.+-|++..-.....--+...-.+....|++.   ...+++.+.      ..-.+
T Consensus        22 ~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~------qkaii   95 (1081)
T KOG0309|consen   22 KVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN------QKAII   95 (1081)
T ss_pred             EecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc------chhhh
Confidence            345678899999999999999955567777764222221111122333334445542   355666554      66778


Q ss_pred             EECCC--CcEEEEEe--ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCce-eeEEEeccCCCcceEEEccCCCceEE
Q 015198          119 WDDHQ--SRCIGEFA--FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       119 wd~~~--~~~~~~~~--~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      |++..  .+.+.-+.  |...|+.+.|+|+..-+.    .|..++.||+++.. .+..+..-.....-+.+..-. ...+
T Consensus        96 wnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~-p~vl  174 (1081)
T KOG0309|consen   96 WNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD-PNVL  174 (1081)
T ss_pred             hhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC-cchh
Confidence            98643  34444433  788999999999877665    68999999998753 344444333333444554432 2334


Q ss_pred             EEecCCCCeEEEEEcC--CcceEEEeccccceeEEEecCC-CCEEEEEcCCCeEEEEEECCCCce--EEEEeCCCCCcce
Q 015198          190 ACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTR--LQEVRRGVDRAEI  264 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~--~~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~~~~~v  264 (411)
                      |  .+....|.+|+.+  +.++..+++|...|+.++|+.- ...+.+.+.|++ |+.||......  .+++.   ...+|
T Consensus       175 a--sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~vt---t~~pi  248 (1081)
T KOG0309|consen  175 A--SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTVT---TNFPI  248 (1081)
T ss_pred             h--hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceecc---ccCcc
Confidence            3  3466788898865  4677888999999999998753 346889999999 99999865432  22332   34478


Q ss_pred             EEEEeCCCCC--EEEEEeCCCcEEEEEccccc
Q 015198          265 YSIALSPNVQ--WLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       265 ~~l~~spdg~--~l~s~s~dg~I~vwd~~~~~  294 (411)
                      +.-.+-|-|.  ++.-.-.+..+.+++.++-.
T Consensus       249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d  280 (1081)
T KOG0309|consen  249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD  280 (1081)
T ss_pred             eeccccccCceeEeccccCCeeeeeccccchh
Confidence            8888888554  33322223355566555443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.69  E-value=4.1e-06  Score=70.58  Aligned_cols=189  Identities=12%  Similarity=-0.000  Sum_probs=120.7

Q ss_pred             eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--ecCce---eEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccC
Q 015198           99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDV---RSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLA  172 (411)
Q Consensus        99 ~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--~~~~i---~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~  172 (411)
                      -..++.++..     |.+.+|...+.+....+-  +...|   ...+-+.-...++ .|.++++++++-+......  |.
T Consensus        84 c~~la~gG~~-----g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~  156 (344)
T KOG4532|consen   84 CVTLADGGAS-----GQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HN  156 (344)
T ss_pred             ccEEEecccc-----ceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--ec
Confidence            3456666555     999999988765433322  33222   2233333344455 7888888887544332222  22


Q ss_pred             CCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cc-eE-EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198          173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NM-IK-LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (411)
Q Consensus       173 ~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~-~~-~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (411)
                      ..+....++.++++.++++.| ....|..+..+.  .. +. ........-.+..|+.....+|++..||. +.|||++.
T Consensus       157 ~~~~~ns~~~snd~~~~~~Vg-ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR~  234 (344)
T KOG4532|consen  157 QNLTQNSLHYSNDPSWGSSVG-DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVRN  234 (344)
T ss_pred             cccceeeeEEcCCCceEEEec-CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEecc
Confidence            223456677777888998887 455666654443  22 22 22233444567889999999999999999 99999987


Q ss_pred             CceEEEE---eCCCCCcceEEEEeCCCCC--EEEEEeCCCcEEEEEccccccC
Q 015198          249 GTRLQEV---RRGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       249 ~~~~~~~---~~~~~~~~v~~l~~spdg~--~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      .......   ....|.+.+..+.|++-|.  +|...-.-+.++|.|++++..-
T Consensus       235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence            5433222   2334888999999998664  4555556678999999998764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=9.8e-06  Score=77.85  Aligned_cols=253  Identities=10%  Similarity=0.078  Sum_probs=146.1

Q ss_pred             CCCCccccCCCCCCeEEEEEcCCC------------CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC--
Q 015198           33 GHPQTAFSDVDEIELISVSWNQDY------------GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--   97 (411)
Q Consensus        33 ~~~~~~~~~~h~~~V~~l~~s~~g------------~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--   97 (411)
                      ...+....+-|...|+.+.|.|-.            -+||++. .|.|.+||.........  +..+...+..+.|-+  
T Consensus        44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~--l~~~~~~~qdl~W~~~r  121 (1062)
T KOG1912|consen   44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW--LSHSNDSVQDLCWVPAR  121 (1062)
T ss_pred             hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh--hcCCCcchhheeeeecc
Confidence            344556678899999999998741            2566777 99999999986554433  335555666666543  


Q ss_pred             -C--eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCc-eeEEEEcC-CeEEEE---EcCeEEEEEcC-------Cc
Q 015198           98 -N--ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSD-VRSVKLSR-DRIVVV---LEHKIYVYSFV-------DL  162 (411)
Q Consensus        98 -~--~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~-i~~~~~~~-~~~~~~---~dg~i~iwd~~-------~~  162 (411)
                       +  ..+++-.+.      ..|.+|+..+|+....+..... ..|+.+.| |.+.++   ..|.+.+-+.-       .+
T Consensus       122 d~Srd~LlaIh~s------s~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg  195 (1062)
T KOG1912|consen  122 DDSRDVLLAIHGS------STLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG  195 (1062)
T ss_pred             CcchheeEEecCC------cEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence             2  223333332      8999999999999988885444 44588776 323332   56666666541       12


Q ss_pred             eeeEEEeccCC-----------------------CcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccc
Q 015198          163 KLLHQIETLAN-----------------------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSH  218 (411)
Q Consensus       163 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~  218 (411)
                      +..+.-..|..                       ...+..|+++|..+.+.+.. ....+.+.+.. ..++....-..+.
T Consensus       196 k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvpier~~  274 (1062)
T KOG1912|consen  196 KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVPIERGG  274 (1062)
T ss_pred             eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEEeccCC
Confidence            22222222111                       00112333343322222222 35566775444 3455555555666


Q ss_pred             eeEEEecCCCC--EEEEEcCCCeEEEEEECCC----------------CceEEEEeCCCCCcceEEEEeCCC-CCEEEEE
Q 015198          219 IACFTLTLDGL--LLATASTRGTLIRIFNTVD----------------GTRLQEVRRGVDRAEIYSIALSPN-VQWLAVA  279 (411)
Q Consensus       219 i~~l~~sp~g~--~l~s~s~dg~~I~vwd~~~----------------~~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~  279 (411)
                      +.-+.+-|+++  .|++.-.||. +.+|-.+.                ++....+... .+-.+......|. ...++.-
T Consensus       275 akfv~vlP~~~rd~LfclH~nG~-ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m-~~~rp~~~~~cPs~~sa~avl  352 (1062)
T KOG1912|consen  275 AKFVDVLPDPRRDALFCLHSNGR-LTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPM-EEFRPVIGASCPSTPSALAVL  352 (1062)
T ss_pred             cceeEeccCCCcceEEEEecCCe-EEEEEeeccCccccccchhhccccccceEEEeec-hhcccceeecCCCChhhhhhh
Confidence            66677777664  7899999999 99996543                1222222211 1112222333454 3445555


Q ss_pred             eCCCcEEEEEccccccC
Q 015198          280 SDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       280 s~dg~I~vwd~~~~~~~  296 (411)
                      -.+|.+.+|++.+|..-
T Consensus       353 ~s~g~~~~w~l~~~ri~  369 (1062)
T KOG1912|consen  353 YSSGDSTFWQLSNGRIH  369 (1062)
T ss_pred             hhcchhHHHhhhcCCcC
Confidence            56888999999987643

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.68  E-value=1.4e-05  Score=75.51  Aligned_cols=224  Identities=12%  Similarity=0.060  Sum_probs=128.4

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEE--------EE-EEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFR--------IV-EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      +..+++++ ++.+.-+|.++++......+......        +. ..... ++.+++++ .+     +.+..+|.++|+
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~-~~-----g~l~ald~~tG~  141 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGS-EK-----GQVYALNAEDGE  141 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEc-CC-----CEEEEEECCCCC
Confidence            44666666 88889999988888887765331100        00 01111 33444443 33     899999999999


Q ss_pred             EEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceE-EEccC-CCceEEEEecCCCCeEEE
Q 015198          126 CIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLC-CLSHH-SSTSVLACPGLQRGQVRI  201 (411)
Q Consensus       126 ~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~g~~dg~i~i  201 (411)
                      .+........+.+--.-.++.+++  .++.++.+|.++|+.+..+.......... ..+|. .++. +++ +..+|.+..
T Consensus       142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~-v~~-~~~~g~v~a  219 (394)
T PRK11138        142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGG-AIV-GGDNGRVSA  219 (394)
T ss_pred             CcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCE-EEE-EcCCCEEEE
Confidence            988887544443321122455555  68899999999999988775432110000 00110 0122 333 345677665


Q ss_pred             -EEcCCcceEEEeccc----c---ceeEEEecC--CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198          202 -EHFGLNMIKLINAHD----S---HIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       202 -~~~~~~~~~~~~~~~----~---~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (411)
                       +..+++.+.......    .   ....+.-+|  .+..++.++.+|. +..+|..+|+.+......    ....+.  .
T Consensus       220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~----~~~~~~--~  292 (394)
T PRK11138        220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYG----SVNDFA--V  292 (394)
T ss_pred             EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCC----CccCcE--E
Confidence             444444433322100    0   011111122  2446667778898 999999999987655431    111222  2


Q ss_pred             CCCEEEEEeCCCcEEEEEcccccc
Q 015198          272 NVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       272 dg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      ++..|+.++.+|.++.+|..+|+.
T Consensus       293 ~~~~vy~~~~~g~l~ald~~tG~~  316 (394)
T PRK11138        293 DGGRIYLVDQNDRVYALDTRGGVE  316 (394)
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcE
Confidence            456788888999999999988864

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=8.7e-08  Score=88.04  Aligned_cols=244  Identities=10%  Similarity=0.164  Sum_probs=160.7

Q ss_pred             CCCCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc-----eEEeecCCCCEEEEEEeccCCeEEEEec
Q 015198           32 FGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSGGFRIVEMLFRCNILALVGA  105 (411)
Q Consensus        32 ~~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~s~  105 (411)
                      +..-......||...|..++--.+.+-+++++ |.+|++|.+.+...     ......+.|...+.++-|-.+...++++
T Consensus       723 ~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc  802 (1034)
T KOG4190|consen  723 FDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC  802 (1034)
T ss_pred             cceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence            34444455679999999988777777788888 99999999974221     1233345778888888888888888886


Q ss_pred             CCCCCCCCCeEEEEECCCCcEEEEEe---ecCceeEEEEcC--CeE-EEE---EcCeEEEEEcCCceeeEEEecc--CCC
Q 015198          106 GDNSQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSR--DRI-VVV---LEHKIYVYSFVDLKLLHQIETL--ANL  174 (411)
Q Consensus       106 ~~d~~~~d~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~--~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~--~~~  174 (411)
                      .       +.|.+||.--++.+..+.   ..+.+..+..-+  +.. +++   ...+|+++|.+.++....++..  ..+
T Consensus       803 D-------~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P  875 (1034)
T KOG4190|consen  803 D-------GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP  875 (1034)
T ss_pred             c-------CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence            4       899999988777766443   122333333322  222 233   6789999999988877777543  222


Q ss_pred             -cceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEE-EECCCCce
Q 015198          175 -RGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI-FNTVDGTR  251 (411)
Q Consensus       175 -~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v-wd~~~~~~  251 (411)
                       ....+++..+.|..+++ +-.+|.|.+ +.++++.+..+...+.....++ .|..+.|+....|.. +.+ |..-+|..
T Consensus       876 na~~R~iaVa~~GN~lAa-~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgim  952 (1034)
T KOG4190|consen  876 NALTRAIAVADKGNKLAA-ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGIM  952 (1034)
T ss_pred             chheeEEEeccCcchhhH-HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCee
Confidence             34566777777778876 556788777 6677776666665555555554 366678888888888 888 97766665


Q ss_pred             EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          252 LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      ..+.+..  ..+..-+  -.-|.-|+++...+.+.||.
T Consensus       953 h~q~kpp--pepahfl--qsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  953 HLQDKPP--PEPAHFL--QSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             eeccCCC--Ccchhhh--hccCceeEEeccCcEEEEEe
Confidence            5454431  1121111  12355677777767777774

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.63  E-value=1.1e-07  Score=57.16  Aligned_cols=39  Identities=33%  Similarity=0.561  Sum_probs=36.0

Q ss_pred             CceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      ++++.++.+  |...|++|+|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~--h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRG--HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEES--SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcC--CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356788888  889999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.61  E-value=1.3e-06  Score=77.58  Aligned_cols=152  Identities=15%  Similarity=0.075  Sum_probs=104.3

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc----eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE----TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      .+..+..++++++||++. +....++++....+    .-...+......+..+.......+....++.     ..+.+|.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~-----~~~di~s  138 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDV-----YSFDILS  138 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCc-----eeeeeec
Confidence            345566778899999988 67766776654332    1111222334445555555566666666665     8888888


Q ss_pred             CCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEE-eccCCCcceEEEccCCCceEEEEecCCC
Q 015198          121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      ...+.+...+.|-..++.++++||.++++   .|..|++-.....-.+..+ -+|...+..+++..+   ..|+ +|+.|
T Consensus       139 ~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~---~~Ll-S~sGD  214 (390)
T KOG3914|consen  139 ADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN---YLLL-SGSGD  214 (390)
T ss_pred             ccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC---ceee-ecCCC
Confidence            87788888888999999999999999988   6889999877655555555 346664554444433   2344 46789


Q ss_pred             CeEEEEEcCC
Q 015198          197 GQVRIEHFGL  206 (411)
Q Consensus       197 g~i~i~~~~~  206 (411)
                      ++|++|++..
T Consensus       215 ~tlr~Wd~~s  224 (390)
T KOG3914|consen  215 KTLRLWDITS  224 (390)
T ss_pred             CcEEEEeccc
Confidence            9999999764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.60  E-value=0.00011  Score=64.29  Aligned_cols=175  Identities=15%  Similarity=0.116  Sum_probs=108.0

Q ss_pred             CCeEEEEECCCCcEEEEEeecC---ceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          113 PTKVIIWDDHQSRCIGEFAFRS---DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      ++.|..||..+|+.+.......   ...+..+..++.+++  .++.|+.||..+|+.+..+......... . ... ++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~-~~~-~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-P-VVD-GGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-E-EEE-TTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-e-eec-ccc
Confidence            3999999999999999987532   222223434444444  7899999999999999888763322222 1 222 223


Q ss_pred             EEEEecCCCCeEEEEE-cCCcceEEE-eccc---cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCc
Q 015198          188 VLACPGLQRGQVRIEH-FGLNMIKLI-NAHD---SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA  262 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~-~~~~~~~~~-~~~~---~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~  262 (411)
                      +++.+  .++.++.++ .+++.+... ....   ...........+..++.+..++. |..+|+++|+.+..........
T Consensus        79 v~v~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   79 VYVGT--SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             EEEEE--TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT-S
T ss_pred             ccccc--ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCCCC
Confidence            33332  566777766 667776663 3221   11112222234778888888999 9999999999988887632121


Q ss_pred             --c------e-EEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          263 --E------I-YSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       263 --~------v-~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                        .      + ..+.+. ++ .++.++.++.+.-+|+.+++.
T Consensus       156 ~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~  195 (238)
T PF13360_consen  156 SSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEK  195 (238)
T ss_dssp             S--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEE
T ss_pred             CcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCE
Confidence              1      1 233333 44 777777788644449988873

...

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.60  E-value=1.6e-07  Score=56.48  Aligned_cols=38  Identities=32%  Similarity=0.592  Sum_probs=35.9

Q ss_pred             cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          207 NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       207 ~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                      +++..+.+|...|++++|+|++.+|++++.|+. |++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence            467889999999999999999999999999999 99997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.57  E-value=1.1e-06  Score=73.51  Aligned_cols=109  Identities=19%  Similarity=0.197  Sum_probs=74.6

Q ss_pred             eEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCceEE
Q 015198          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQ  253 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (411)
                      +.++..+|..+.++++|+.||.+-+|+.+.  .+...++.|+.+|+.+-|+| ++..|+++++||. +.-||..+ +.+.
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~-~~l~  259 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDAST-TFLS  259 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCC-ceEE
Confidence            444455555556777799999999988765  44566789999999999998 5678999999999 99999653 2221


Q ss_pred             E---------------------EeCC--CCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          254 E---------------------VRRG--VDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       254 ~---------------------~~~~--~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      .                     +..-  .....|++  |.--|..|++|+.-+.|++++
T Consensus       260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence            0                     0000  00112222  333577899999888888875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.57  E-value=4.5e-05  Score=77.07  Aligned_cols=235  Identities=16%  Similarity=0.116  Sum_probs=138.2

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      +.|.++.|..++..++++. .|.|.+-|.++.......   .-..+|.++.|++|...++-....     +++.+.. .+
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~-----~tll~mT-~~  139 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGR-----QTLLFMT-KD  139 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCC-----cEEEEEe-cc
Confidence            6899999999999888888 999999888775543333   345668888888877655444332     5555544 44


Q ss_pred             CcEEEEEe------ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEEEec--
Q 015198          124 SRCIGEFA------FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPG--  193 (411)
Q Consensus       124 ~~~~~~~~------~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--  193 (411)
                      ..++....      ..+..-.+-|-.....+- ..|.....+.... +....+..+.   .-..++|-++|.++|+++  
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~---~~~~IsWRgDg~~fAVs~~~  216 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD---HKTSISWRGDGEYFAVSFVE  216 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc---CCceEEEccCCcEEEEEEEe
Confidence            33333222      122333344443332222 2222222221110 1111111111   234567777787887632  


Q ss_pred             -CCC-CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEE---cCCCeEEEEEECCCCceEEEE--eCCCCCcceEE
Q 015198          194 -LQR-GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA---STRGTLIRIFNTVDGTRLQEV--RRGVDRAEIYS  266 (411)
Q Consensus       194 -~~d-g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~---s~dg~~I~vwd~~~~~~~~~~--~~~~~~~~v~~  266 (411)
                       ..+ ..|++|+..+..-..-....+.-.+++|-|.|.++++-   ..|+. |.+|. ++|-.-..|  ........|..
T Consensus       217 ~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffE-rNGL~hg~f~l~~p~de~~ve~  294 (1265)
T KOG1920|consen  217 SETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFE-RNGLRHGEFVLPFPLDEKEVEE  294 (1265)
T ss_pred             ccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEe-cCCccccccccCCcccccchhe
Confidence             123 78999998854333223334445689999999998874   34556 99998 454332222  22224445999


Q ss_pred             EEeCCCCCEEEE---EeCCCcEEEEEcccc
Q 015198          267 IALSPNVQWLAV---ASDKGTVHIFSLRVR  293 (411)
Q Consensus       267 l~~spdg~~l~s---~s~dg~I~vwd~~~~  293 (411)
                      ++|+.++..||+   ......|++|-+.+.
T Consensus       295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  295 LAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecCCCCceeeeecccccceEEEEEecCe
Confidence            999999999987   444445999988765

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.56  E-value=1.7e-05  Score=67.79  Aligned_cols=195  Identities=13%  Similarity=0.092  Sum_probs=103.4

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec----C-CCCEEEEEEeccCC-------eEEEEecCCCCCCC
Q 015198           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL----K-SGGFRIVEMLFRCN-------ILALVGAGDNSQYP  112 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~-------~~~l~s~~~d~~~~  112 (411)
                      +=..++|+||+.+||.+. .|+|++||+.. ..++...-    . .-...+..+.|...       ..+++-.-      
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y------  117 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY------  117 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEec------
Confidence            457899999999999999 99999999875 33332211    0 11123333444321       12222211      


Q ss_pred             CCeEEEEECC-----CCcEEEEEe----ecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCCcceEEEccC
Q 015198          113 PTKVIIWDDH-----QSRCIGEFA----FRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH  183 (411)
Q Consensus       113 d~~i~vwd~~-----~~~~~~~~~----~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (411)
                      .|.++-|-+.     ..+....+.    +...|.++.++|..++++..|.-.-   +++.    -.  ......+++..-
T Consensus       118 ~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~---~~~~----s~--a~~~GLtaWRiL  188 (282)
T PF15492_consen  118 RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN---QDGM----SK--ASSCGLTAWRIL  188 (282)
T ss_pred             cceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC---CCcc----cc--ccccCceEEEEc
Confidence            1566555532     234444444    4778999999999877761111000   0000    00  001122222221


Q ss_pred             CCceEEE-EecCCCCeE------EEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE
Q 015198          184 SSTSVLA-CPGLQRGQV------RIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (411)
Q Consensus       184 ~~~~~l~-~~g~~dg~i------~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (411)
                      .+..+.. +....++..      .++.... +...........|..|.+||||++||+...+|. |.+|++.+-+....+
T Consensus       189 ~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  189 SDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe-EEEEecCcchhhccc
Confidence            1111111 111111111      1111111 000111224678999999999999999999999 999999988877766


Q ss_pred             eC
Q 015198          256 RR  257 (411)
Q Consensus       256 ~~  257 (411)
                      ..
T Consensus       268 ~~  269 (282)
T PF15492_consen  268 KQ  269 (282)
T ss_pred             ch
Confidence            54

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.55  E-value=6.6e-05  Score=66.94  Aligned_cols=241  Identities=12%  Similarity=0.050  Sum_probs=141.8

Q ss_pred             EEEEEcCCCCEEEEEe-----------CCcEEEEecCCCcceEEeecCCC-CEEE----EEEeccCCeEEEEecCCCCCC
Q 015198           48 ISVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-GFRI----VEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~-----------dg~i~iw~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      -.+..+||++.++++.           ...|.+||..+........+... ...+    ..+..+.++.++.....-|  
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP--  116 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP--  116 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS--
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC--
Confidence            4467899999888743           23489999999877777666432 1111    1133445554444332222  


Q ss_pred             CCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcC-CceeeEEEec----cCCCcceE-EEccCC
Q 015198          112 PPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFV-DLKLLHQIET----LANLRGLC-CLSHHS  184 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~-~~~~~~~~~~----~~~~~~~~-~~~~~~  184 (411)
                       ...|.|.|+..++.+.++...+...-.-..+++...+ .||.+.-..+. .|+.......    ...++... .+. ..
T Consensus       117 -a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~-~~  194 (342)
T PF06433_consen  117 -ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS-RD  194 (342)
T ss_dssp             -SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE-TT
T ss_pred             -CCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE-CC
Confidence             2789999999999999888777665555566664444 89999988886 5555433211    11111111 111 12


Q ss_pred             CceEEEEecCCCCeEEEEEcCCcceEEEec-------------cccceeEEEecCCCCEEEEEcC---CC------eEEE
Q 015198          185 STSVLACPGLQRGQVRIEHFGLNMIKLINA-------------HDSHIACFTLTLDGLLLATAST---RG------TLIR  242 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~-------------~~~~i~~l~~sp~g~~l~s~s~---dg------~~I~  242 (411)
                      .+.++..  +.+|.|+--+..+........             -.+.-.-+++++..+.|++.-.   ++      +.|.
T Consensus       195 ~~~~~F~--Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW  272 (342)
T PF06433_consen  195 GGRLYFV--SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW  272 (342)
T ss_dssp             TTEEEEE--BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred             CCeEEEE--ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence            2334333  267888875555433222211             0123345778876655554321   11      2488


Q ss_pred             EEECCCCceEEEEeCCCCCcceEEEEeCCCCC-EEEEE-eCCCcEEEEEccccccCC
Q 015198          243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVA-SDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~-s~dg~I~vwd~~~~~~~~  297 (411)
                      ++|+.+++.+..+..   ..++.+|+.+.|.+ +|++. ..++.|.+||..+|+..+
T Consensus       273 v~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  273 VYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             EEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            899999999999884   34688999998776 56544 457899999999998653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.52  E-value=1.2e-06  Score=83.44  Aligned_cols=238  Identities=13%  Similarity=0.107  Sum_probs=153.2

Q ss_pred             CeEEEEEcCC--CCEEEEEe-CCcEEEEecCC-CcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCCeEEEEE
Q 015198           46 ELISVSWNQD--YGCFAAGT-SCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        46 ~V~~l~~s~~--g~~la~g~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      .|-.+.|+|.  ..+-++.. ...-.+|++.. ........+++|...++.+.|++.. .++++++-|     ..+..||
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvd-----t~vh~wd  143 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD-----TYVHAWD  143 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccc-----ccceeee
Confidence            3566778765  33444444 66667898863 2334445567999999999999854 577888887     9999999


Q ss_pred             CCCCc-EEEEEe-ecCceeEEEEcCC-eEEEE--EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          121 DHQSR-CIGEFA-FRSDVRSVKLSRD-RIVVV--LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       121 ~~~~~-~~~~~~-~~~~i~~~~~~~~-~~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      +++-. .+.... -......++|+.. ...++  ..+.|++||++.| ..+..++++...+..+.+..--.+.  +.+.+
T Consensus       144 ~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~--~~s~~  221 (1081)
T KOG0309|consen  144 MRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSE--IMSSS  221 (1081)
T ss_pred             ccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhh--hcccC
Confidence            88753 444443 4556677888854 44555  5678999999765 5667777765433333332222222  33567


Q ss_pred             CCCeEEEEEcCCcc--eEEEeccccceeEEEecCCCCEEEE--EcCCCeEEEEE---------ECCC-CceEEEEeCCCC
Q 015198          195 QRGQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLAT--ASTRGTLIRIF---------NTVD-GTRLQEVRRGVD  260 (411)
Q Consensus       195 ~dg~i~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s--~s~dg~~I~vw---------d~~~-~~~~~~~~~~~~  260 (411)
                      .||+|+.|++....  -........+|..-.+.|-|+-.++  .-.+.. +.++         +..+ .+.+++|.+  |
T Consensus       222 ~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~-v~~~~c~n~d~e~n~~~~~~pVh~F~G--H  298 (1081)
T KOG0309|consen  222 NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNM-VPQLRCENSDLEWNVFDLNTPVHTFVG--H  298 (1081)
T ss_pred             CCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCee-eeeccccchhhhhccccCCcceeeecC--c
Confidence            89999999887532  2333345667777777776542222  111112 4443         3333 357888888  7


Q ss_pred             CcceEEEEeCCCC----------CEEEEEeCCCcEEEEEcccc
Q 015198          261 RAEIYSIALSPNV----------QWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       261 ~~~v~~l~~spdg----------~~l~s~s~dg~I~vwd~~~~  293 (411)
                      ...|....|-..+          -.|++-+.|.++++|-+...
T Consensus       299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            7777766664321          26999999999999988763

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.50  E-value=3.2e-06  Score=70.87  Aligned_cols=73  Identities=14%  Similarity=0.298  Sum_probs=59.4

Q ss_pred             cceeEEEecCCCC-EEEEEcCCCeEEEEEECCCCceEE-EEeCCCCCcceEEEEeCC-CCCEEEEEeCCCcEEEEEccc
Q 015198          217 SHIACFTLTLDGL-LLATASTRGTLIRIFNTVDGTRLQ-EVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       217 ~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~~~~-~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~  292 (411)
                      ..|.+++-+|..+ ++++|+.||. +-+||.+...... .+..  |+.+|+.+-|+| ++..|+++++||.+..||-.+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~a--hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLKA--HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHHH--hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3488898888654 6778888898 9999998875433 3344  888999999998 567899999999999999875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.49  E-value=0.00016  Score=63.78  Aligned_cols=197  Identities=16%  Similarity=0.124  Sum_probs=120.9

Q ss_pred             EEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec-C--ceeEEEEcCCeEEEE--------EcCeEEEEEc
Q 015198           92 EMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-S--DVRSVKLSRDRIVVV--------LEHKIYVYSF  159 (411)
Q Consensus        92 ~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~-~--~i~~~~~~~~~~~~~--------~dg~i~iwd~  159 (411)
                      .+..+| ....++.+-.-    -....+||..+++....+... +  ---.-.|++||.++.        ..|.|-|||.
T Consensus         9 ~~a~~p~~~~avafaRRP----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRP----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ceeeCCCCCeEEEEEeCC----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            445555 34445544432    256789999999988877621 1  122457999999988        2588999999


Q ss_pred             C-CceeeEEEeccCCCcceEEEccCCCceEEEEe-cC-----CCCe------------EEEEEcCCcceEE--E--eccc
Q 015198          160 V-DLKLLHQIETLANLRGLCCLSHHSSTSVLACP-GL-----QRGQ------------VRIEHFGLNMIKL--I--NAHD  216 (411)
Q Consensus       160 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~-----~dg~------------i~i~~~~~~~~~~--~--~~~~  216 (411)
                      . +.+.+.++..+.-  ..-.+...+++..|+++ |+     ..|.            ++++..+++.+.+  +  .-|.
T Consensus        85 ~~~~~ri~E~~s~GI--GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGI--GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ  162 (305)
T ss_pred             cCCcEEEeEecCCCc--ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence            8 5677777765543  33333344555444432 22     1122            2234444555544  3  3367


Q ss_pred             cceeEEEecCCCCEEEEEcCCCe------EEEEEECCCCceEEEEeCC-----CCCcceEEEEeCCCCCEEEEEe-CCCc
Q 015198          217 SHIACFTLTLDGLLLATASTRGT------LIRIFNTVDGTRLQEVRRG-----VDRAEIYSIALSPNVQWLAVAS-DKGT  284 (411)
Q Consensus       217 ~~i~~l~~sp~g~~l~s~s~dg~------~I~vwd~~~~~~~~~~~~~-----~~~~~v~~l~~spdg~~l~s~s-~dg~  284 (411)
                      -.|.-+++.++|..++..-..|.      .|-+++  .++.+..+...     ...+.+-+|++++++.++++.+ .-+.
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence            78999999999986665544432      244443  23333333321     1235789999999999886555 4567


Q ss_pred             EEEEEccccccC
Q 015198          285 VHIFSLRVRVVG  296 (411)
Q Consensus       285 I~vwd~~~~~~~  296 (411)
                      +.+||..++...
T Consensus       241 ~~~~d~~tg~~~  252 (305)
T PF07433_consen  241 VAVWDAATGRLL  252 (305)
T ss_pred             EEEEECCCCCEe
Confidence            999999999854

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.47  E-value=0.0005  Score=58.19  Aligned_cols=109  Identities=8%  Similarity=-0.036  Sum_probs=74.1

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~  134 (411)
                      ..+++.|+ .+.+.--|..++...++..+ +.......+. -.|.  ++-|...     +.+++.+.++|..+..+...+
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdf--VV~GCy~-----g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDF--VVLGCYS-----GGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCE--EEEEEcc-----CcEEEEEecchhheeeeeehh
Confidence            45677788 88888888888777777655 4444444444 2222  3444443     999999999999888888555


Q ss_pred             ceeEE-EEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCC
Q 015198          135 DVRSV-KLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN  173 (411)
Q Consensus       135 ~i~~~-~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~  173 (411)
                      .|.+- ...+++.++.   .|++.+..|.++..++...+....
T Consensus        94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~  136 (354)
T KOG4649|consen   94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG  136 (354)
T ss_pred             hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc
Confidence            55432 3455555554   799999999988888877655443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=1.3e-06  Score=76.07  Aligned_cols=114  Identities=14%  Similarity=0.132  Sum_probs=84.6

Q ss_pred             ceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-----c
Q 015198          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-----T  250 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-----~  250 (411)
                      +.++++.+-.+.. +++| .+-.|.+-+.....-+.+. ..+.|.++.|...+.++..|..+|. |..+|++.+     .
T Consensus       215 ~~CawSlni~gyh-fs~G-~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~~~  290 (425)
T KOG2695|consen  215 WSCAWSLNIMGYH-FSVG-LSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGNGW  290 (425)
T ss_pred             hhhhhhhccceee-eccc-ccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCCCc
Confidence            3345554444444 3345 4555666555554445554 6778899999998999999999999 999999864     4


Q ss_pred             eEEEEeCCCCCcceEEEEeCC-CCCEEEEEeCCCcEEEEEccccccC
Q 015198          251 RLQEVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       251 ~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +...+.   |...|+++..-. ++++|++.+.+|+|++||++--++.
T Consensus       291 ~a~rly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~  334 (425)
T KOG2695|consen  291 CAQRLY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK  334 (425)
T ss_pred             ceEEEE---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc
Confidence            455555   788899988776 7889999999999999999988764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.39  E-value=0.0012  Score=64.09  Aligned_cols=231  Identities=13%  Similarity=0.068  Sum_probs=130.2

Q ss_pred             CEEEEEe-CCcEEEEecCCCcceEEeecCCCC---EEEE-EEeccCCeEEEEecCCCCC---CCCCeEEEEECCCCcEEE
Q 015198           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGG---FRIV-EMLFRCNILALVGAGDNSQ---YPPTKVIIWDDHQSRCIG  128 (411)
Q Consensus        57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~s~~~d~~---~~d~~i~vwd~~~~~~~~  128 (411)
                      ..+++++ ++.|.-+|.++++.+.+..+....   ..+. ..... ++.+++.......   -.++.+..+|..+|+.+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            5666677 999999999998888777653221   0011 11111 2344443321100   013889999999999988


Q ss_pred             EEeec-Cc--------------------e-eEEEEcC-CeEEEE--EcC------------------eEEEEEcCCceee
Q 015198          129 EFAFR-SD--------------------V-RSVKLSR-DRIVVV--LEH------------------KIYVYSFVDLKLL  165 (411)
Q Consensus       129 ~~~~~-~~--------------------i-~~~~~~~-~~~~~~--~dg------------------~i~iwd~~~~~~~  165 (411)
                      .+... ..                    + ....+.+ .+.+++  .++                  .|+-+|.++|+.+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            87632 10                    1 1233443 344444  333                  7999999999998


Q ss_pred             EEEeccCCCcc---------eEEEc-cCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEE
Q 015198          166 HQIETLANLRG---------LCCLS-HHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATA  234 (411)
Q Consensus       166 ~~~~~~~~~~~---------~~~~~-~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~  234 (411)
                      ..++.......         +.... .+.....+++.++.+|.+.. +..+++.+-.....   ...++.+| + .++.+
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vyv~  344 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVYLG  344 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEEEc
Confidence            88754322111         01111 12222224445667888877 55566665544321   11233344 2 23222


Q ss_pred             ------------------cCCCeEEEEEECCCCceEEEEeCCCCC------cce--EEEEeCCCCCEEEEEeCCCcEEEE
Q 015198          235 ------------------STRGTLIRIFNTVDGTRLQEVRRGVDR------AEI--YSIALSPNVQWLAVASDKGTVHIF  288 (411)
Q Consensus       235 ------------------s~dg~~I~vwd~~~~~~~~~~~~~~~~------~~v--~~l~~spdg~~l~s~s~dg~I~vw  288 (411)
                                        ..+|. +.-.|+.+|+.+.+.....+.      .+.  ..+.  ..+..|++++.||.|+.+
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~al  421 (488)
T cd00216         345 AFHIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAF  421 (488)
T ss_pred             cccccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEE
Confidence                              24577 889999999988777643111      111  1122  245778889999999999


Q ss_pred             EccccccC
Q 015198          289 SLRVRVVG  296 (411)
Q Consensus       289 d~~~~~~~  296 (411)
                      |.++|+..
T Consensus       422 d~~tG~~l  429 (488)
T cd00216         422 DATTGKEL  429 (488)
T ss_pred             ECCCCcee
Confidence            99999854

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.37  E-value=0.00013  Score=69.07  Aligned_cols=224  Identities=13%  Similarity=0.158  Sum_probs=121.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      .....-....++++|+|++++++++|...||.........       ......+.|.+++.+.+-.. .     +.|.++
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-------~G~g~~~vw~~~n~yAv~~~-~-----~~I~I~   94 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-------FGSGLSFVWSSRNRYAVLES-S-----STIKIY   94 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-------EEE-SEEEE-TSSEEEEE-T-T-----S-EEEE
T ss_pred             CCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-------cCceeEEEEecCccEEEEEC-C-----CeEEEE
Confidence            3445556789999999999999889999999844322211       22344566776665554433 3     788886


Q ss_pred             ECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198          120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       120 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (411)
                      .--+.+....++....+..+-.   |.+++  .++.|.+||..+++.++.+...    .+..+.|++++.+++..+  +.
T Consensus        95 kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t--~~  165 (443)
T PF04053_consen   95 KNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVT--KD  165 (443)
T ss_dssp             ETTEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE---S-
T ss_pred             EcCccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEe--CC
Confidence            4233333234443333444433   55555  6677999999999999998643    235566677777888764  45


Q ss_pred             eEEEEEcCCc------------ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          198 QVRIEHFGLN------------MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       198 ~i~i~~~~~~------------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                      .+.|...+..            ....+..-...|.+.+|..+  .++..+.. . |+.+  ..|+.- .+..  -..++.
T Consensus       166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl--~~Ge~~-~i~~--ld~~~y  236 (443)
T PF04053_consen  166 SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYL--VNGETG-IIAH--LDKPLY  236 (443)
T ss_dssp             SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEE--ETTEEE-EEEE---SS--E
T ss_pred             eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEE--EcCCcc-eEEE--cCCceE
Confidence            6777555555            45555444678889999766  44444434 5 7763  345432 2222  233567


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          266 SIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      =+.+.+..+.|.....|+.|..+.++...
T Consensus       237 llgy~~~~~~ly~~Dr~~~v~~~~ld~~~  265 (443)
T PF04053_consen  237 LLGYLPKENRLYLIDRDGNVISYELDLSE  265 (443)
T ss_dssp             EEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred             EEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence            77788877888889999999999887643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.34  E-value=5.3e-05  Score=71.20  Aligned_cols=84  Identities=19%  Similarity=0.278  Sum_probs=70.1

Q ss_pred             ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      .....+.+.+++|+...|+.|..||. |.+||...+..... +   ..-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~-k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA-K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCe-EEEEEcCCCeeeee-e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            46778999999999999999999999 99999866643322 2   3346789999999999999999999999999988


Q ss_pred             ccCCCCCCC
Q 015198          294 VVGEDSSSS  302 (411)
Q Consensus       294 ~~~~~~~~~  302 (411)
                      .....+..+
T Consensus       332 pi~~qLlsE  340 (545)
T PF11768_consen  332 PIKMQLLSE  340 (545)
T ss_pred             ccceeeccc
Confidence            776655555

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.32  E-value=2e-06  Score=74.85  Aligned_cols=142  Identities=15%  Similarity=0.127  Sum_probs=108.2

Q ss_pred             CCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC-----cEEEEE
Q 015198           56 YGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-----RCIGEF  130 (411)
Q Consensus        56 g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~-----~~~~~~  130 (411)
                      |-.+++|.+..|-+-|++++-..   .| .....+.+..|...+.++..|...     |.|.++|++.+     .+...+
T Consensus       225 gyhfs~G~sqqv~L~nvetg~~q---sf-~sksDVfAlQf~~s~nLv~~GcRn-----geI~~iDLR~rnqG~~~~a~rl  295 (425)
T KOG2695|consen  225 GYHFSVGLSQQVLLTNVETGHQQ---SF-QSKSDVFALQFAGSDNLVFNGCRN-----GEIFVIDLRCRNQGNGWCAQRL  295 (425)
T ss_pred             eeeecccccceeEEEEeeccccc---cc-ccchhHHHHHhcccCCeeEecccC-----CcEEEEEeeecccCCCcceEEE
Confidence            44566777888999999874432   23 356667788888877777777776     99999998764     567777


Q ss_pred             eecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCcee---eEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEE
Q 015198          131 AFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKL---LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH  203 (411)
Q Consensus       131 ~~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~  203 (411)
                      -|...|+++..-. +++.+.   .+|+|++||++--++   +.++.+|.+.....-+..++....+++ +++|...+||.
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s-~GdDcytRiWs  374 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS-VGDDCYTRIWS  374 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE-ccCeeEEEEEe
Confidence            8999999998765 455444   799999999977666   899999988777777777777777766 55899999998


Q ss_pred             cCCc
Q 015198          204 FGLN  207 (411)
Q Consensus       204 ~~~~  207 (411)
                      .+..
T Consensus       375 l~~g  378 (425)
T KOG2695|consen  375 LDSG  378 (425)
T ss_pred             cccC
Confidence            8743

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.32  E-value=0.00091  Score=61.36  Aligned_cols=175  Identities=11%  Similarity=0.128  Sum_probs=106.2

Q ss_pred             CeEEEEECCCCcEEEEEe--ecCceeEEE---EcCC----eEEEE------------Ec-CeEEEEEcCCc----eeeEE
Q 015198          114 TKVIIWDDHQSRCIGEFA--FRSDVRSVK---LSRD----RIVVV------------LE-HKIYVYSFVDL----KLLHQ  167 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~--~~~~i~~~~---~~~~----~~~~~------------~d-g~i~iwd~~~~----~~~~~  167 (411)
                      ..|++.|..+.+.+..+.  ....+.+++   +..+    ..+++            .. |.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            578999988888887776  344455444   4432    34444            12 88999999873    22222


Q ss_pred             EeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc-eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198          168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (411)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (411)
                      +........+.++..-. +.++++.   ++.|.++...... +.....+..++........+++++.|+.... +.++..
T Consensus        82 i~~~~~~g~V~ai~~~~-~~lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFN-GRLVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS-VSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEET-TEEEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS-EEEEEE
T ss_pred             EEEEeecCcceEhhhhC-CEEEEee---cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccC-EEEEEE
Confidence            22221122455555553 3455443   4789997766655 5555445444445555555779999998888 887754


Q ss_pred             CC-CceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          247 VD-GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       247 ~~-~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      +. ...+..+........++++.|-++++.++.+..+|.|.++.....
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE  204 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence            43 333444443324557889999867779999999999999998643

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.28  E-value=0.00071  Score=63.96  Aligned_cols=224  Identities=17%  Similarity=0.122  Sum_probs=120.5

Q ss_pred             EEEEcCCCCEEEEEeCC------------cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           49 SVSWNQDYGCFAAGTSC------------GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        49 ~l~~s~~g~~la~g~dg------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      .++.+|.|..+|...|.            .|+||+... +.+....+..  ..++.+.|..+..+++...+      |.+
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~--~~iv~~~wt~~e~LvvV~~d------G~v  103 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDS--GRIVGMGWTDDEELVVVQSD------GTV  103 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECC--CCEEEEEECCCCeEEEEEcC------CEE
Confidence            45667777777776644            588888764 4444454433  68889999887665555433      999


Q ss_pred             EEEECCCCcEEEEEe--------ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCce-eeEEEeccCCCcceEEEccCCCc
Q 015198          117 IIWDDHQSRCIGEFA--------FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                      +++|+. |+....+.        ....+....+..+|..+. .++.+++..-.... ..+.+...  +.......+.+..
T Consensus       104 ~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~--p~~~~~~~~~~~~  180 (410)
T PF04841_consen  104 RVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEI--PGLWTKFHWWPSW  180 (410)
T ss_pred             EEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccC--CCccccccccccc
Confidence            999975 43311111        112233334555776666 56666555432211 11111100  0000101111000


Q ss_pred             eEEEEecCCCCeEEEEEcCCcceEEEec-------cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC
Q 015198          187 SVLACPGLQRGQVRIEHFGLNMIKLINA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV  259 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~  259 (411)
                      ..+. .-..++.+.+....+..+..+..       ..+++..|++||+|++||.-..+|. +.+....-.+.+.++... 
T Consensus       181 ~~i~-~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~~~-  257 (410)
T PF04841_consen  181 TVIP-LLSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFDTD-  257 (410)
T ss_pred             ccce-EeecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEeecC-
Confidence            0000 00112223332222222222222       2468999999999999999999999 999987666677677653 


Q ss_pred             CCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      .......+.|.-+...++.-  ...|.+..
T Consensus       258 ~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  258 SKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            23466788888765444333  33466654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.26  E-value=0.00043  Score=70.29  Aligned_cols=196  Identities=13%  Similarity=0.132  Sum_probs=105.9

Q ss_pred             CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCc
Q 015198           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDL  162 (411)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~  162 (411)
                      .+...++++.|..+...++.+...     |.|.+-|..+......-.....|.+++|+||+.+++  ......++...+.
T Consensus        66 ~gd~~i~s~~fl~d~~~i~v~~~~-----G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f  140 (1265)
T KOG1920|consen   66 DGDDEIVSVQFLADTNSICVITAL-----GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF  140 (1265)
T ss_pred             CCCcceEEEEEecccceEEEEecC-----CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence            445678888887765544444444     888888877766554444788999999999999988  3323334433443


Q ss_pred             eeeEEEeccCCC---cceEEEccCCCceEEEEecCCCCeEEEEEc--CCcceEEEeccccceeEEEecCCCCEEEEE---
Q 015198          163 KLLHQIETLANL---RGLCCLSHHSSTSVLACPGLQRGQVRIEHF--GLNMIKLINAHDSHIACFTLTLDGLLLATA---  234 (411)
Q Consensus       163 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~---  234 (411)
                      .++.....+...   ...+..-|-.....+  .|+ .|.......  ..+.......+. .=+.|.|--||+++|+.   
T Consensus       141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~  216 (1265)
T KOG1920|consen  141 EPIAEKPLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFVE  216 (1265)
T ss_pred             cchhccccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEEEe
Confidence            333222211100   011112221111111  121 111111000  000011111222 23468899999999883   


Q ss_pred             --cCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEe---CCCcEEEEEcccc
Q 015198          235 --STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTVHIFSLRVR  293 (411)
Q Consensus       235 --s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~I~vwd~~~~  293 (411)
                        ..... |+|||.+ |.+-..-..  ....-.+++|-|.|.++++..   .|+.|.+|.-+.-
T Consensus       217 ~~~~~Rk-irV~drE-g~Lns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  217 SETGTRK-IRVYDRE-GALNSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             ccCCcee-EEEeccc-chhhcccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence              22256 9999965 544322222  233456799999999998754   4557888875543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.00061  Score=66.78  Aligned_cols=198  Identities=16%  Similarity=0.189  Sum_probs=122.3

Q ss_pred             EEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCCeEEEEECCCC----
Q 015198           51 SWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDDHQS----  124 (411)
Q Consensus        51 ~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~~i~vwd~~~~----  124 (411)
                      +|++.+..++.|+ +|.|.+++-.  - .....++.....++...+.-+. .++++-+.|...+...|++|+++.-    
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s--~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS--F-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc--c-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            4578889999999 9998887643  1 2222343444446666666554 5666655552222238999997542    


Q ss_pred             --cEEEE---Ee-----ecCceeEEEEcCCeEEEE---EcCeEEEEEcC----CceeeEEEeccCCCcceEEEccCCCce
Q 015198          125 --RCIGE---FA-----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFV----DLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       125 --~~~~~---~~-----~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                        +++.+   +.     ...++.+++++.+-+.++   .+|.|..+.-+    .+...........+++.+.+..++...
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence              33422   22     245788889988877766   78999988531    122122222234455666666655543


Q ss_pred             EEEEecCCCCeEEEEEcCCcc--eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198          188 VLACPGLQRGQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (411)
                      .++++   ...|.++...++.  ...+..|...+.|..+++....+++++.. . +.+||....+.-..+.
T Consensus       187 lFv~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~-l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  187 LFVAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-F-LYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEEEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-e-EEEEcCCCcceeeeec
Confidence            34443   4577887777766  55577888899999998766645555544 3 9999986555555665

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.23  E-value=1.4e-05  Score=78.27  Aligned_cols=140  Identities=18%  Similarity=0.224  Sum_probs=97.6

Q ss_pred             cCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccce
Q 015198          142 SRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHI  219 (411)
Q Consensus       142 ~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i  219 (411)
                      .|+..+.. ....+..+|+++.+..+........  +.-+..+.  +++ ++|...|+|.+ +....+.+..+.+|.+.|
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR~Nn--r~l-f~G~t~G~V~LrD~~s~~~iht~~aHs~si  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMRYNN--RNL-FCGDTRGTVFLRDPNSFETIHTFDAHSGSI  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCc--eEEEEecC--cEE-EeecccceEEeecCCcCceeeeeeccccce
Confidence            44444444 5667888899888877766555443  33344332  444 45889999999 666678899999999999


Q ss_pred             eEEEecCCCCEEEEEcC---------CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC-CCEEEEEeCCCcEEEEE
Q 015198          220 ACFTLTLDGLLLATAST---------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN-VQWLAVASDKGTVHIFS  289 (411)
Q Consensus       220 ~~l~~sp~g~~l~s~s~---------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~I~vwd  289 (411)
                      ..+.  -.|++|++++.         |.- |+|||++.-+.+..+.-  +. ...-+.|.|. ...+++++..|...+-|
T Consensus       221 SDfD--v~GNlLitCG~S~R~~~l~~D~F-vkVYDLRmmral~PI~~--~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  221 SDFD--VQGNLLITCGYSMRRYNLAMDPF-VKVYDLRMMRALSPIQF--PY-GPQFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             eeee--ccCCeEEEeecccccccccccch-hhhhhhhhhhccCCccc--cc-CchhhhhcccccceEEEEecccceeecc
Confidence            7654  57889998875         445 89999998876655553  22 2245677774 34688889999999988


Q ss_pred             ccc
Q 015198          290 LRV  292 (411)
Q Consensus       290 ~~~  292 (411)
                      ..+
T Consensus       295 ~~~  297 (1118)
T KOG1275|consen  295 TAT  297 (1118)
T ss_pred             ccc
Confidence            443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.22  E-value=0.0028  Score=58.17  Aligned_cols=218  Identities=15%  Similarity=0.220  Sum_probs=121.9

Q ss_pred             CcEEEEecCCCcceEEeecCCCCEEEEE---EeccC-----CeEEEEecCC----CCCCCCCeEEEEECCCC-----c--
Q 015198           65 CGFRIYNCEPFKETFRRDLKSGGFRIVE---MLFRC-----NILALVGAGD----NSQYPPTKVIIWDDHQS-----R--  125 (411)
Q Consensus        65 g~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~l~s~~~----d~~~~d~~i~vwd~~~~-----~--  125 (411)
                      ..|+|.|..+...+....|.. ...+.+   +.+..     ...++++.+.    ++....|.|.++++...     +  
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            357888887776666666632 333332   33332     2333333321    11112289999998874     2  


Q ss_pred             EEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCce-eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE--E
Q 015198          126 CIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--E  202 (411)
Q Consensus       126 ~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i--~  202 (411)
                      .+.....+++|++++--.+..+++.++.|++|++...+ ....- ....+..+.++....+  ++++ |.....+.+  |
T Consensus        81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~-~~~~~~~i~sl~~~~~--~I~v-gD~~~sv~~~~~  156 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKA-FYDSPFYITSLSVFKN--YILV-GDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEE-EE-BSSSEEEEEEETT--EEEE-EESSSSEEEEEE
T ss_pred             EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhh-eecceEEEEEEecccc--EEEE-EEcccCEEEEEE
Confidence            22333478999999987555333389999999998777 43332 2333346666666554  4554 444555555  6


Q ss_pred             EcCCcceEEEec--cccceeEEEecCCCCEEEEEcCCCeEEEEEECCC-------Cc-eEEEEeCCCCCcceEEE---Ee
Q 015198          203 HFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD-------GT-RLQEVRRGVDRAEIYSI---AL  269 (411)
Q Consensus       203 ~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~-------~~-~~~~~~~~~~~~~v~~l---~~  269 (411)
                      +.....+..+..  ....++++.|-++++.++.+..+|. +.++....       +. .+......+....|+++   ++
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l  235 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL  235 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence            665554444432  3556888888866678999999999 99997652       22 22222111133467777   65


Q ss_pred             CCC--CC------EEEEEeCCCcEEEE
Q 015198          270 SPN--VQ------WLAVASDKGTVHIF  288 (411)
Q Consensus       270 spd--g~------~l~s~s~dg~I~vw  288 (411)
                      .|.  +.      .++.++.+|.|.+.
T Consensus       236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  236 IPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eecCCCCcccccceEEEEecCCEEEEE
Confidence            552  22      47888899998843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.22  E-value=0.00045  Score=66.70  Aligned_cols=166  Identities=7%  Similarity=0.009  Sum_probs=104.4

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCCcceEEEcc------CCCce
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH------HSSTS  187 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  187 (411)
                      +.+.+.|.++.+...++........+.+++++.++....    |+.+.+..+..+...... ....+.+      ..+++
T Consensus       215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTs----yNsE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK  289 (635)
T PRK02888        215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTC----YNSEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGK  289 (635)
T ss_pred             EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEec----cCcccCcceeeeccccCc-eEEEEchHHHHHhhhCCC
Confidence            678888888888888888777778889999988887110    122222222222211111 2222222      22444


Q ss_pred             EEEEecCCCCeEEEEEcCC------cceEEEeccccceeEEEecCCCCEEEEEcC-CCeEEEEEECCCCce---------
Q 015198          188 VLACPGLQRGQVRIEHFGL------NMIKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTR---------  251 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~---------  251 (411)
                      +..+ +  ++.|.+.+...      ..+..+. -......+.++|||+++++++. +.. |.|.|+.+.+.         
T Consensus       290 ~~~V-~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        290 FKTI-G--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             EEEE-C--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCCcc
Confidence            4443 2  45677744433      2333333 3445578999999998887765 566 99999987553         


Q ss_pred             ---EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          252 ---LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       252 ---~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                         ..+...   .......+|.++|....+---|..|..|++.+
T Consensus       365 ~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        365 DAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence               333332   12345678999999888888999999999987

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.19  E-value=0.0026  Score=57.32  Aligned_cols=181  Identities=12%  Similarity=0.021  Sum_probs=102.7

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeE-EEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccC---CCcceEEEccCCCceEE
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRS-VKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLA---NLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l  189 (411)
                      +.|.-|+..+++. ..+.....+.+ +.+...+.+++.+..+++++.+++.....+....   .....-....++++.+.
T Consensus        47 ~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~w  125 (307)
T COG3386          47 GRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIW  125 (307)
T ss_pred             CeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEE
Confidence            7888888766543 34444444444 4566777777788888888886665533332111   11111223334455554


Q ss_pred             EEecC----------CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC--C---ceEEE
Q 015198          190 ACPGL----------QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD--G---TRLQE  254 (411)
Q Consensus       190 ~~~g~----------~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~--~---~~~~~  254 (411)
                      +.+-.          .-|.|+..+..+..++.+..+-..-+.|+||||++.|+.+......|.-|++..  +   .....
T Consensus       126 fgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~  205 (307)
T COG3386         126 FGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF  205 (307)
T ss_pred             EeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE
Confidence            43322          113233333334555555565666688999999988877766533388887752  2   11111


Q ss_pred             EeCCCCCcceEEEEeCCCCCEEEEEeCCC-cEEEEEccccccC
Q 015198          255 VRRGVDRAEIYSIALSPNVQWLAVASDKG-TVHIFSLRVRVVG  296 (411)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg-~I~vwd~~~~~~~  296 (411)
                      +......+..-.++...+|.+.+++..+| .|.+|+.+ ++..
T Consensus       206 ~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~  247 (307)
T COG3386         206 VDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL  247 (307)
T ss_pred             EEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE
Confidence            22211445566777788888775554444 78888888 5543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.18  E-value=9.4e-05  Score=72.04  Aligned_cols=220  Identities=9%  Similarity=0.089  Sum_probs=130.1

Q ss_pred             EEEEEcCCCCEEEEEe-----CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           48 ISVSWNQDYGCFAAGT-----SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      +-.+|+|...+||+++     .|.|.||- ++++....  . ..+..+.+++|+|...+++.+-.-     |.+.+|...
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~--V-t~P~hatSLCWHpe~~vLa~gwe~-----g~~~v~~~~   89 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD--V-TYPVHATSLCWHPEEFVLAQGWEM-----GVSDVQKTN   89 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc--c-ccceehhhhccChHHHHHhhcccc-----ceeEEEecC
Confidence            4567999999999886     57788884 33332111  2 345667779999999999988877     999999966


Q ss_pred             CCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEe--cc--CCCcceEEEccCCCce------E
Q 015198          123 QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE--TL--ANLRGLCCLSHHSSTS------V  188 (411)
Q Consensus       123 ~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~------~  188 (411)
                      +.+...... |+.+|..+.|+++|..+.   .-|.|.+|....-..++...  .|  ......+++...+++.      .
T Consensus        90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK  169 (1416)
T KOG3617|consen   90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK  169 (1416)
T ss_pred             CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence            655444333 999999999999999888   45889999875322222111  11  1223445555444422      1


Q ss_pred             EEEecCCCCeEE-EEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198          189 LACPGLQRGQVR-IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (411)
Q Consensus       189 l~~~g~~dg~i~-i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (411)
                      .+++|. +.-+- ..++..+....-..|.       =.|+|..+..++.+|. |+-.| ..|+.....+..   +. ..+
T Consensus       170 aaVtgD-e~alD~~fnwk~~~a~rs~~ks-------gv~~g~~F~~~~~~Gt-Vyyvd-q~g~~~~V~k~d---S~-vQm  235 (1416)
T KOG3617|consen  170 AAVTGD-ESALDEPFNWKESLAERSDEKS-------GVPKGTEFLFAGKSGT-VYYVD-QNGRQRTVHKLD---SE-VQM  235 (1416)
T ss_pred             hhccCc-hhhhcccccCccchhhcccccc-------CCCCCcEEEEEcCCce-EEEEc-CCCcEEEEEEcc---ch-HHH
Confidence            233443 32222 2222211110001111       1478888899999999 87776 466665555542   12 234


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEc
Q 015198          268 ALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                      -|.+...-|+....+-++.++=+
T Consensus       236 Lf~~~~eai~~i~e~lr~~l~~v  258 (1416)
T KOG3617|consen  236 LFMGYCEAISIIIEFLRDCLIFV  258 (1416)
T ss_pred             HHhcccceEEEEeeeceeeEEEe
Confidence            45565455555555555444433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=0.00011  Score=71.25  Aligned_cols=187  Identities=17%  Similarity=0.220  Sum_probs=126.4

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      +.++|++++  +++|+.|+ +|.|++++.....   ...+ .+...      ..+|.++++|+.|     |+|.|-.+.+
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~-~~s~~------~~~Gey~asCS~D-----Gkv~I~sl~~  102 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNF-DHSSS------ILEGEYVASCSDD-----GKVVIGSLFT  102 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc---cccc-ccccc------ccCCceEEEecCC-----CcEEEeeccC
Confidence            445666665  56899999 9999999876422   2212 22221      5678999999998     9999999999


Q ss_pred             CcEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEE-
Q 015198          124 SRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE-  202 (411)
Q Consensus       124 ~~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~-  202 (411)
                      .+....+.+..++.+++++|+-.              . +       +             . +.++ +|+..| +.+. 
T Consensus       103 ~~~~~~~df~rpiksial~Pd~~--------------~-~-------~-------------s-k~fv-~GG~ag-lvL~e  144 (846)
T KOG2066|consen  103 DDEITQYDFKRPIKSIALHPDFS--------------R-Q-------Q-------------S-KQFV-SGGMAG-LVLSE  144 (846)
T ss_pred             CccceeEecCCcceeEEeccchh--------------h-h-------h-------------h-hhee-ecCcce-EEEeh
Confidence            99888888888999998888610              0 0       0             0 1122 244455 4442 


Q ss_pred             ---EcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC----CcceEEEEeCCCCCE
Q 015198          203 ---HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD----RAEIYSIALSPNVQW  275 (411)
Q Consensus       203 ---~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~----~~~v~~l~~spdg~~  275 (411)
                         .-+...+ .+....++|.++.|  .|+++|-++.+|  |+|||+.+++.+..+.....    ......+.|.++. .
T Consensus       145 r~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWand~G--v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~  218 (846)
T KOG2066|consen  145 RNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDG--VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-R  218 (846)
T ss_pred             hhhhcCccce-eeecCccceEEEEe--cCcEEEEecCCC--cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-e
Confidence               2222222 34566889999999  678999999888  89999999888877665311    1123467887664 4


Q ss_pred             EEEEeCCCcEEEEEcccc
Q 015198          276 LAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       276 l~s~s~dg~I~vwd~~~~  293 (411)
                      |+.|-.| +|+|..++.+
T Consensus       219 LVIGW~d-~v~i~~I~~~  235 (846)
T KOG2066|consen  219 LVIGWGD-SVKICSIKKR  235 (846)
T ss_pred             EEEecCC-eEEEEEEecc
Confidence            5566555 5999999944

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.17  E-value=6.2e-05  Score=73.82  Aligned_cols=176  Identities=16%  Similarity=0.238  Sum_probs=120.3

Q ss_pred             CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecC
Q 015198           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRS  134 (411)
Q Consensus        57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~  134 (411)
                      ..++.|+ ...+..+|+.+.+......+....  +.-|.  .++..+..|...     |+|.+-|.++.+.++++. |.+
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR--~Nnr~lf~G~t~-----G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMR--YNNRNLFCGDTR-----GTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCc--eEEEE--ecCcEEEeeccc-----ceEEeecCCcCceeeeeecccc
Confidence            3455555 666677777765554444432222  33332  345566666666     999999999999999998 999


Q ss_pred             ceeEEEEcCCeEEEE----------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEE-
Q 015198          135 DVRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH-  203 (411)
Q Consensus       135 ~i~~~~~~~~~~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~-  203 (411)
                      .|.++....+-.+.+          .|.-|++||++..+.+..+..+..+ ..+.|.|.-.....++  +..|...+-+ 
T Consensus       219 siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~--S~sGq~q~vd~  295 (1118)
T KOG1275|consen  219 SISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVT--SQSGQFQFVDT  295 (1118)
T ss_pred             ceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEE--ecccceeeccc
Confidence            998888766544443          5888999999988877766655544 4556666554444333  3567777733 


Q ss_pred             --cCCc--ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          204 --FGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       204 --~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                        ....  .+..+......+..++++++|+.|+.|..+|. |.+|-
T Consensus       296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa  340 (1118)
T KOG1275|consen  296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA  340 (1118)
T ss_pred             cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence              2222  23333444566999999999999999999999 99996

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.17  E-value=7.2e-05  Score=70.47  Aligned_cols=189  Identities=13%  Similarity=0.066  Sum_probs=121.1

Q ss_pred             CEEEEEEeccCCeEEEEecCCCCCCCC-CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcC--eEEEEEc
Q 015198           87 GFRIVEMLFRCNILALVGAGDNSQYPP-TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEH--KIYVYSF  159 (411)
Q Consensus        87 ~~~~~~~~~~~~~~~l~s~~~d~~~~d-~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg--~i~iwd~  159 (411)
                      ...+....|++++..++--...  ... ..+.++++.+++........+.-...+|+|||+.++    .|+  .|+++|+
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~--~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFE--LGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             CcceeccccCcCCCceEEEEEe--cCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            3344445566665443322111  011 369999999998888777777778889999999888    344  5788888


Q ss_pred             CCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE--EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC
Q 015198          160 VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR  237 (411)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d  237 (411)
                      ..++.. .+.....  ....-+++|+|..|+++.+..|.-.|  .+..+.....+......-..-.++|||++|+..+..
T Consensus       270 ~~~~~~-~Lt~~~g--i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         270 DGKNLP-RLTNGFG--INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS  346 (425)
T ss_pred             CCCcce-ecccCCc--cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence            776633 3433222  22366677888899988888887666  445556556665554444477899999998876643


Q ss_pred             -C-eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC
Q 015198          238 -G-TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG  283 (411)
Q Consensus       238 -g-~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg  283 (411)
                       | ..|.+.|+.++..++.+..   ......-.|.++|+.+...+..+
T Consensus       347 ~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         347 GGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             CCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccCC
Confidence             2 1277778777765444442   22344567888888777655443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=2.2e-05  Score=70.87  Aligned_cols=198  Identities=12%  Similarity=0.116  Sum_probs=137.5

Q ss_pred             CeEEEEecCCCCCCCCCeEEEEECCCCcEEEE---Ee-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEe
Q 015198           98 NILALVGAGDNSQYPPTKVIIWDDHQSRCIGE---FA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIE  169 (411)
Q Consensus        98 ~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~---~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~  169 (411)
                      -..++.+++.|     |.++.|.-..-.-+.-   +. |...|.+++.+-++.+.+    .|..++++|+.+-..+..++
T Consensus        19 ka~fiiqASlD-----Gh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK   93 (558)
T KOG0882|consen   19 KAKFIIQASLD-----GHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK   93 (558)
T ss_pred             hhheEEeeecc-----hhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc
Confidence            34566677777     9999998433122222   22 778899999999998888    38999999998776665555


Q ss_pred             ccCCCcceEEEccCC-CceEEEEecCCCCeEEEEEcCCc---ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          170 TLANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       170 ~~~~~~~~~~~~~~~-~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                      ...-|-.+..+...+ .-..|+++...++.+.+.+..+.   ....-.-|..+|.++.+++-+..+++....|. |.-|.
T Consensus        94 L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VEyWs  172 (558)
T KOG0882|consen   94 LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VEYWS  172 (558)
T ss_pred             cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eEeec
Confidence            443333333222222 22356666667888888665542   23333568999999999999999999998998 99998


Q ss_pred             CCC------CceEEEEeC-------CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 015198          246 TVD------GTRLQEVRR-------GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSS  301 (411)
Q Consensus       246 ~~~------~~~~~~~~~-------~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~  301 (411)
                      ...      .+....++.       ........++.|+|+|..+.+-+.|..|+++++.+|+..+++..
T Consensus       173 ~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  173 AEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             CCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence            652      111111110       01334678999999999999999999999999999987765443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.16  E-value=0.00028  Score=66.56  Aligned_cols=174  Identities=14%  Similarity=0.055  Sum_probs=113.0

Q ss_pred             CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-----E-c-CeEEEEEcCCceeeEEEeccCCCcceEEEccCCC
Q 015198          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----L-E-HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-----~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (411)
                      ..+.+-|.. +.....+. ....+..-+|+|++..++     . . ..++++|+.+++.........   ......++|+
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g---~~~~P~fspD  248 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG---NNGAPAFSPD  248 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC---ccCCccCCCC
Confidence            566777754 65555555 456777788999988776     2 2 469999998887666554222   2345566777


Q ss_pred             ceEEEEecCCCCeEEEE--EcCCcceEEEeccccceeEEEecCCCCEEEEEcCCC-e-EEEEEECCCCceEEEEeCCCCC
Q 015198          186 TSVLACPGLQRGQVRIE--HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-T-LIRIFNTVDGTRLQEVRRGVDR  261 (411)
Q Consensus       186 ~~~l~~~g~~dg~i~i~--~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~-~I~vwd~~~~~~~~~~~~~~~~  261 (411)
                      ++.|+++...||...||  +..++....+....+.-..-.|+|||+.|+-.+..+ . .|.++|.+.+.. ..+..  ..
T Consensus       249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~--~~  325 (425)
T COG0823         249 GSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF--SG  325 (425)
T ss_pred             CCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--cC
Confidence            78888888888887774  444555555554444445778999999887665443 2 266677765554 33332  11


Q ss_pred             cceEEEEeCCCCCEEEEEeCC-Cc--EEEEEccccc
Q 015198          262 AEIYSIALSPNVQWLAVASDK-GT--VHIFSLRVRV  294 (411)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~d-g~--I~vwd~~~~~  294 (411)
                      ..-..-.|+|||++|+..+.. |.  |.+.++.++.
T Consensus       326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            112267899999999877643 44  6666665555

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.15  E-value=0.0033  Score=61.15  Aligned_cols=192  Identities=13%  Similarity=0.155  Sum_probs=104.8

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCE----EEEE--EeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEE
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF----RIVE--MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG  128 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~  128 (411)
                      +..+.++. ++.+.-.|..+++.+..........    .+..  +....++.+++.. .+     +.|.-+|.++|+.+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-~~-----g~v~AlD~~TG~~~W  134 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-FD-----GRLVALDAETGKQVW  134 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-CC-----CeEEEEECCCCCEee
Confidence            33455566 8999999998888777765422200    0000  1111114444443 33     999999999999998


Q ss_pred             EEeecCc------e-eEEEEcCCeEEEE-E----------cCeEEEEEcCCceeeEEEeccCCCc-ce------------
Q 015198          129 EFAFRSD------V-RSVKLSRDRIVVV-L----------EHKIYVYSFVDLKLLHQIETLANLR-GL------------  177 (411)
Q Consensus       129 ~~~~~~~------i-~~~~~~~~~~~~~-~----------dg~i~iwd~~~~~~~~~~~~~~~~~-~~------------  177 (411)
                      .+.....      + ....+.. +.+++ .          ++.++.+|..+|+.+..+....... ..            
T Consensus       135 ~~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~  213 (488)
T cd00216         135 KFGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP  213 (488)
T ss_pred             eecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence            8874332      1 1222332 34443 1          5789999999999988776532110 00            


Q ss_pred             ------EEEccCCCceEEEEecCCCC------------------eEEE-EEcCCcceEEEeccccce------eEEEec-
Q 015198          178 ------CCLSHHSSTSVLACPGLQRG------------------QVRI-EHFGLNMIKLINAHDSHI------ACFTLT-  225 (411)
Q Consensus       178 ------~~~~~~~~~~~l~~~g~~dg------------------~i~i-~~~~~~~~~~~~~~~~~i------~~l~~s-  225 (411)
                            .....++.+..+++ +..++                  .|.- +..+++.+-..+.-....      ....+. 
T Consensus       214 ~g~~vw~~pa~d~~~g~V~v-g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~  292 (488)
T cd00216         214 GGGTSWASPTYDPKTNLVYV-GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD  292 (488)
T ss_pred             CCCCccCCeeEeCCCCEEEE-ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence                  01122222223333 33333                  3443 445555555543211100      000111 


Q ss_pred             ---CCCC---EEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198          226 ---LDGL---LLATASTRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       226 ---p~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (411)
                         -+|.   .++.++.+|. +...|.++|+.+....
T Consensus       293 ~~~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~  328 (488)
T cd00216         293 IKPKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARP  328 (488)
T ss_pred             ccccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeE
Confidence               1343   6778889999 9999999999987765

The alignment model contains an 8-bladed beta-propeller.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.13  E-value=1.9e-06  Score=83.71  Aligned_cols=214  Identities=10%  Similarity=0.066  Sum_probs=136.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ....|....+|++|+.+.+.|++|+ .|.|++|++.++.......  .|...+..+-.+.++....+.+..   +.-...
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n--cH~SavT~vePs~dgs~~Ltsss~---S~Plsa 1170 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN--CHQSAVTLVEPSVDGSTQLTSSSS---SSPLSA 1170 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc--ccccccccccccCCcceeeeeccc---cCchHH
Confidence            3567888999999999999999999 9999999999876655544  677777777777766544443321   124678


Q ss_pred             EEECCC-CcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEecc----CCCcceEEEccCCCceEE
Q 015198          118 IWDDHQ-SRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL----ANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       118 vwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l  189 (411)
                      +|++.+ +...+.+..   -.++.|+.....-+   ......+||++++..+.++-..    ........|  +|...++
T Consensus      1171 LW~~~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F--sP~D~LI 1245 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF--SPCDTLI 1245 (1516)
T ss_pred             HhccccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc--CCCcceE
Confidence            999654 444444442   33566665433222   4567899999998877664221    111133344  4443444


Q ss_pred             EEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198          190 ACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (411)
                      .    .||.  +|+.+. ..++.|......+ .-.|+|.|..++.-+      .|||+++.+.++.+..-    .-..+.
T Consensus      1246 l----ndGv--LWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~L----dqc~Vt 1308 (1516)
T KOG1832|consen 1246 L----NDGV--LWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS------EIWDMRTFKLLHSVPSL----DQCAVT 1308 (1516)
T ss_pred             e----eCce--eeeeccHHHHhhhhhheecc-cccccCCCceEEeec------hhhhhHHHHHHhcCccc----cceEEE
Confidence            3    3443  476654 3444444333222 234899999887633      48999999988776642    235678


Q ss_pred             eCCCCCEEEEE
Q 015198          269 LSPNVQWLAVA  279 (411)
Q Consensus       269 ~spdg~~l~s~  279 (411)
                      |+..|..++..
T Consensus      1309 FNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1309 FNSTGDVMYAM 1319 (1516)
T ss_pred             eccCccchhhh
Confidence            98888866543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.00065  Score=66.58  Aligned_cols=187  Identities=15%  Similarity=0.198  Sum_probs=110.4

Q ss_pred             ccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCc-eeEEEEcCCeEEEE---E-cC----eEEEEEcCC---
Q 015198           95 FRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSD-VRSVKLSRDRIVVV---L-EH----KIYVYSFVD---  161 (411)
Q Consensus        95 ~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~-i~~~~~~~~~~~~~---~-dg----~i~iwd~~~---  161 (411)
                      +++++..++-|+.+     |.|.+.+ ..-+.++.++ +... |..+....+..+++   . ++    .+++|+++.   
T Consensus        31 ~~s~~~~vvigt~~-----G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   31 CSSSTGSVVIGTAD-----GRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             EcCCCceEEEeecc-----ccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence            45555556666655     8888777 4445556666 4444 55555555545555   2 22    699999943   


Q ss_pred             ---ceee--EEEeccC---CCcceEEEccCCCceEEEEecCCCCeEEEEE---cCCcceEE--EeccccceeEEEecCCC
Q 015198          162 ---LKLL--HQIETLA---NLRGLCCLSHHSSTSVLACPGLQRGQVRIEH---FGLNMIKL--INAHDSHIACFTLTLDG  228 (411)
Q Consensus       162 ---~~~~--~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~---~~~~~~~~--~~~~~~~i~~l~~sp~g  228 (411)
                         .+++  +.+..+.   ++.....++.+.+-..+|+ |..+|.|..+.   .+.+-.+.  ......+|+.+++..++
T Consensus       105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~-Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~  183 (933)
T KOG2114|consen  105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVC-GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG  183 (933)
T ss_pred             CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEE-EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence               2333  1222221   2223334444444455554 88999998832   22122222  23346799999999999


Q ss_pred             CE-EEEEcCCCeEEEEEECCCCce--EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          229 LL-LATASTRGTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       229 ~~-l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      +. ++++. ... |.+|.+. |+.  ...+..  +...+.|..+++....+++++... +.+|+.+..+
T Consensus       184 ~s~lFv~T-t~~-V~~y~l~-gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~~e~-l~fY~sd~~~  246 (933)
T KOG2114|consen  184 KSVLFVAT-TEQ-VMLYSLS-GRTPSLKVLDN--NGISLNCSSFSDGTYQFICAGSEF-LYFYDSDGRG  246 (933)
T ss_pred             ceeEEEEe-cce-eEEEEec-CCCcceeeecc--CCccceeeecCCCCccEEEecCce-EEEEcCCCcc
Confidence            86 33333 345 9999986 444  333443  666889999987655466665554 9999987443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=0.00038  Score=62.32  Aligned_cols=240  Identities=12%  Similarity=0.049  Sum_probs=129.7

Q ss_pred             ccCCCCCCeEEEEEcCCCC-EEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCe
Q 015198           39 FSDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTK  115 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~-~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~  115 (411)
                      ....|...|..++|+|..+ ++..++ +..|+|.|+++........   ....+.+++|+-+ ..++..|...     |.
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~~~~wSC~wDlde~h~IYaGl~n-----G~  259 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AYNQIWSCCWDLDERHVIYAGLQN-----GM  259 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---ccCCceeeeeccCCcceeEEeccC-----ce
Confidence            5778999999999999987 677888 9999999999855544443   2356777777754 4556666665     99


Q ss_pred             EEEEECCCCcE-EEEEe---ecCceeEEEEc-------CCeEEEEEcCeEEEEEcC--CceeeEEEeccCCCcceEEEcc
Q 015198          116 VIIWDDHQSRC-IGEFA---FRSDVRSVKLS-------RDRIVVVLEHKIYVYSFV--DLKLLHQIETLANLRGLCCLSH  182 (411)
Q Consensus       116 i~vwd~~~~~~-~~~~~---~~~~i~~~~~~-------~~~~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~  182 (411)
                      |.|||++..+- +..+.   ...+|..++.-       ..|.+++.--.+..|++.  .+.....++.. .+..++.+..
T Consensus       260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele-~pG~cismqy  338 (463)
T KOG1645|consen  260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELE-PPGICISMQY  338 (463)
T ss_pred             EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccC-CCcceeeeee
Confidence            99999876432 22221   22334433322       223333333334445442  11111112111 1123344444


Q ss_pred             CCCceEEEEecCCC------Ce--EEEEEcCCcceEEE-ecc-ccc------eeEEEecCCCCEEEE-EcCCCeEEEEEE
Q 015198          183 HSSTSVLACPGLQR------GQ--VRIEHFGLNMIKLI-NAH-DSH------IACFTLTLDGLLLAT-ASTRGTLIRIFN  245 (411)
Q Consensus       183 ~~~~~~l~~~g~~d------g~--i~i~~~~~~~~~~~-~~~-~~~------i~~l~~sp~g~~l~s-~s~dg~~I~vwd  245 (411)
                      ++....++.+-..+      ..  .+++..++..+-.. .++ .+.      -..+.-.++.++|+. ++..+. +.+||
T Consensus       339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~-lil~D  417 (463)
T KOG1645|consen  339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE-LILQD  417 (463)
T ss_pred             cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce-eEEec
Confidence            44333333322110      00  12223333222111 111 000      011112345565554 444556 99999


Q ss_pred             CCCCceEEEEeCCCCCcceEEEEeCC-C-CCEEEEEeCCCcEEEEEccc
Q 015198          246 TVDGTRLQEVRRGVDRAEIYSIALSP-N-VQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~v~~l~~sp-d-g~~l~s~s~dg~I~vwd~~~  292 (411)
                      ..+++.++++..   ..+|.+++... + +.+|++-.+| .++||..+.
T Consensus       418 ~~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LTd~-~v~Iyk~es  462 (463)
T KOG1645|consen  418 PHSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLTDD-RVHIYKNES  462 (463)
T ss_pred             cchhheeeeccc---CcceeecceeecCCcchhhheecc-eEEEEecCC
Confidence            999999999884   46888877654 2 3467666555 599987654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.03  E-value=6.1e-05  Score=64.98  Aligned_cols=157  Identities=11%  Similarity=0.211  Sum_probs=97.4

Q ss_pred             ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCce-eeEE--EeccC-----CCcceEEEccCCCceEEEEecCCCCeEEE
Q 015198          132 FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLK-LLHQ--IETLA-----NLRGLCCLSHHSSTSVLACPGLQRGQVRI  201 (411)
Q Consensus       132 ~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~-~~~~--~~~~~-----~~~~~~~~~~~~~~~~l~~~g~~dg~i~i  201 (411)
                      |.-.|.++.++.|...+.  .|=.|.+|++.-.. ....  ++.+.     ..++...|++.....++ + .+..|.|++
T Consensus       171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm-Y-SsSkG~Ikl  248 (460)
T COG5170         171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM-Y-SSSKGEIKL  248 (460)
T ss_pred             ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE-E-ecCCCcEEe
Confidence            778899999999887777  67789999985321 1111  12221     11233344443333333 3 347899999


Q ss_pred             EEcCCc-----ceE------------EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-ceEEEEeCCC----
Q 015198          202 EHFGLN-----MIK------------LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGV----  259 (411)
Q Consensus       202 ~~~~~~-----~~~------------~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~----  259 (411)
                      -+.+..     ...            -+.+-...|..+.|+++|+++++-+. -+ |+|||++.. .++.++..+.    
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-lt-vkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LT-VKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ce-EEEEecccccCCceeechHHHHHH
Confidence            444421     111            11223456888999999999987654 34 999999765 4566654310    


Q ss_pred             ------CCcce---EEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          260 ------DRAEI---YSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       260 ------~~~~v---~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                            ....|   ..+.|+.|.+.+++|+..+..-+|-+.+
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence                  11222   3578999999999999888888876443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.97  E-value=0.0014  Score=65.78  Aligned_cols=134  Identities=19%  Similarity=0.341  Sum_probs=91.4

Q ss_pred             cCeEEEEEcCCceeeEEEeccCCCcceEEEccCC-------CceEEEEecCCCCeEEEEEcCCc--ceEEEe----cccc
Q 015198          151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS-------STSVLACPGLQRGQVRIEHFGLN--MIKLIN----AHDS  217 (411)
Q Consensus       151 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~g~~dg~i~i~~~~~~--~~~~~~----~~~~  217 (411)
                      ...|+-.|++.|+.+..+..+... .+..+.++.       ...++   |-.+..+..|+.+..  .+..-.    ....
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tfl---Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFL---GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEE---EECCCceEEeccCCCCCceeeccccccccCC
Confidence            578999999999999999887652 366777653       22233   334556666555432  222111    2345


Q ss_pred             ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          218 HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      ...|++-+.+| +||+|+.+|. ||+|| +.|+.-++.-.+ ...+|.+|..+.||+||++.+ +..|.+++..-.
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~-IRLyd-~~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~~~  649 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGD-IRLYD-RLGKRAKTALPG-LGDPIIGIDVTADGKWILATC-KTYLLLIDTLIK  649 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCc-EEeec-ccchhhhhcCCC-CCCCeeEEEecCCCcEEEEee-cceEEEEEEeee
Confidence            67788887777 6899999999 99999 455443333322 456999999999999987665 456888887543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.94  E-value=0.0018  Score=61.48  Aligned_cols=218  Identities=13%  Similarity=0.098  Sum_probs=115.1

Q ss_pred             CCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCce
Q 015198           86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLK  163 (411)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~  163 (411)
                      .......+.++|++.+++.+++      |...|+.....+..    ..+.-..+.|.+.+.+.+  ..+.|.++.--+.+
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~------geY~iyt~~~~r~k----~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGD------GEYEIYTALAWRNK----AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEET------TEEEEEETTTTEEE----EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred             CCcCCeeEEECCCCCEEEEEcC------CEEEEEEccCCccc----ccCceeEEEEecCccEEEEECCCeEEEEEcCccc
Confidence            3444667889999887777655      78888884333322    234455688888888887  46789997432333


Q ss_pred             eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEE
Q 015198          164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIR  242 (411)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~  242 (411)
                      ....+....   .+-.+-.   |.+|+..+  ++.|.++++.. +.+..+...  +|..+.|+++|++++..+.+.  +.
T Consensus       101 ~~k~i~~~~---~~~~If~---G~LL~~~~--~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~--i~  168 (443)
T PF04053_consen  101 VVKSIKLPF---SVEKIFG---GNLLGVKS--SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS--IY  168 (443)
T ss_dssp             TT-----SS----EEEEE----SSSEEEEE--TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S--EE
T ss_pred             cceEEcCCc---ccceEEc---CcEEEEEC--CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe--EE
Confidence            333443322   1222222   55666653  45789988774 555555533  489999999999999998775  67


Q ss_pred             EEECCCC-----------ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccc
Q 015198          243 IFNTVDG-----------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTE  311 (411)
Q Consensus       243 vwd~~~~-----------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~  311 (411)
                      |++.+..           .....+..  -...|.+.+|..|  .++-.+.. .|+-  +-.|+..               
T Consensus       169 il~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~---------------  226 (443)
T PF04053_consen  169 ILKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG---------------  226 (443)
T ss_dssp             EEEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE---------------
T ss_pred             EEEecchhcccccccCchhceEEEEE--ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc---------------
Confidence            7664332           02222221  1346888899766  34333333 5665  5555432               


Q ss_pred             cccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          312 LLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                                                .++.-+...+++.+.++ +++++.-.|+.+..|.++.
T Consensus       227 ------------------------------------------~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  227 ------------------------------------------IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             ------------------------------------------EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             ------------------------------------------eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence                                                      22222236677888775 8999999999999999985

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.021  Score=53.64  Aligned_cols=237  Identities=15%  Similarity=0.118  Sum_probs=151.6

Q ss_pred             CeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCCeEEEEECC
Q 015198           46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      ....+.+.+++..+.+..  ...+...+..  .................+..++.+ ..++....+     +.|.+.|..
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~-----~~v~vid~~  104 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDS-----NTVSVIDTA  104 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc--cceeeeeccCCCccccceeeCCCCCeEEEecCCC-----CeEEEEcCc
Confidence            556778888886666555  3333333332  111111111111222333444443 355555544     899999988


Q ss_pred             CCcEEEEEeecCceeEEEEcCCeEEEE---E---cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          123 QSRCIGEFAFRSDVRSVKLSRDRIVVV---L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       123 ~~~~~~~~~~~~~i~~~~~~~~~~~~~---~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      +.+.............+++++++..+.   .   ++.+.+.|..+.+.+........+   ..+.+++++..++.+-..+
T Consensus       105 ~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P---~~~a~~p~g~~vyv~~~~~  181 (381)
T COG3391         105 TNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP---TGVAVDPDGNKVYVTNSDD  181 (381)
T ss_pred             ccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc---ceEEECCCCCeEEEEecCC
Confidence            888888887666788899999885554   2   588999998888888876554433   4555666666555555568


Q ss_pred             CeEEEEEcCCcceEE------EeccccceeEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEEE-EeCCCCCcceEE
Q 015198          197 GQVRIEHFGLNMIKL------INAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQE-VRRGVDRAEIYS  266 (411)
Q Consensus       197 g~i~i~~~~~~~~~~------~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~-~~~~~~~~~v~~  266 (411)
                      +.|.+.+.....+..      ... ...-..+.++|+|.++......   +. +...|..++..... +... .. ....
T Consensus       182 ~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~~~~-~~-~~~~  257 (381)
T COG3391         182 NTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDLPVG-SG-APRG  257 (381)
T ss_pred             CeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEeccccc-cC-CCCc
Confidence            888886655554442      222 2233568899999976665444   47 99999988877655 2221 22 4567


Q ss_pred             EEeCCCCCEEEEEeCC-CcEEEEEccccccC
Q 015198          267 IALSPNVQWLAVASDK-GTVHIFSLRVRVVG  296 (411)
Q Consensus       267 l~~spdg~~l~s~s~d-g~I~vwd~~~~~~~  296 (411)
                      +..+|+|..+.+.... +.+.+-|..+....
T Consensus       258 v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~  288 (381)
T COG3391         258 VAVDPAGKAAYVANSQGGTVSVIDGATDRVV  288 (381)
T ss_pred             eeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence            8999999998887544 78999888886644

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.88  E-value=0.0027  Score=61.48  Aligned_cols=187  Identities=9%  Similarity=-0.037  Sum_probs=110.7

Q ss_pred             EEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEE
Q 015198           50 VSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI  127 (411)
Q Consensus        50 l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~  127 (411)
                      +=+.|||+.+...+  .+.+.+.|.++.+....... ..  ....+.+++++.++...+.+. -...++...+..+...+
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dg--npd~v~~spdGk~afvTsyNs-E~G~tl~em~a~e~d~~  273 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DG--NLDNVDTDYDGKYAFSTCYNS-EEGVTLAEMMAAERDWV  273 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CC--CcccceECCCCCEEEEeccCc-ccCcceeeeccccCceE
Confidence            34567887765445  78888889887665555544 22  223344555665554443110 00134444443333322


Q ss_pred             EEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCC-----ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE
Q 015198          128 GEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD-----LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI  201 (411)
Q Consensus       128 ~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i  201 (411)
                      ..+.... +.  .+.++|++.. .++.|.+.|..+     .+.+..+.....+   -.+..+|+++++++++..+.+|.|
T Consensus       274 vvfni~~-ie--a~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsP---HGV~vSPDGkylyVanklS~tVSV  347 (635)
T PRK02888        274 VVFNIAR-IE--EAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNP---HGVNTSPDGKYFIANGKLSPTVTV  347 (635)
T ss_pred             EEEchHH-HH--HhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCc---cceEECCCCCEEEEeCCCCCcEEE
Confidence            2222111 00  2344665555 567899999987     4566666655443   345556677888888888999999


Q ss_pred             EEcCCcc-------------eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198          202 EHFGLNM-------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (411)
Q Consensus       202 ~~~~~~~-------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (411)
                      .+.....             +.....-.++ ...+|.++|....+-.-|.. |..||+.+
T Consensus       348 IDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsq-v~kwn~~~  405 (635)
T PRK02888        348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQ-IVKWNIEA  405 (635)
T ss_pred             EEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecce-eEEEehHH
Confidence            5554311             2333333333 35789999998888888998 99999876

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.84  E-value=0.009  Score=51.58  Aligned_cols=224  Identities=14%  Similarity=0.147  Sum_probs=129.4

Q ss_pred             EEEEEcCCC-CEEEEEe-CCc-EEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 015198           48 ISVSWNQDY-GCFAAGT-SCG-FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS  124 (411)
Q Consensus        48 ~~l~~s~~g-~~la~g~-dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~  124 (411)
                      ..++|+|.- .-++.+- -|+ ..++|.+..+......-.......-.-.|++++.+|.....|.+...|.|-|||...+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            445666653 3344555 343 4577777655544433222222233345899999888887776667799999997654


Q ss_pred             -cEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEE-E-------------------cCCceeeEEEecc--CCCcceEE
Q 015198          125 -RCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVY-S-------------------FVDLKLLHQIETL--ANLRGLCC  179 (411)
Q Consensus       125 -~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iw-d-------------------~~~~~~~~~~~~~--~~~~~~~~  179 (411)
                       +.+.++. |.-.-..+.+.+||+.++ .+|.|... |                   ..+|+++.+....  .....+..
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH  230 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH  230 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence             4455565 666677889999999888 67766655 2                   2233333222111  11122233


Q ss_pred             EccCCCceEEEEecCCCCeEEE-EEcC---------------CcceEEEec-------cccceeEEEecCCCCEEEEEcC
Q 015198          180 LSHHSSTSVLACPGLQRGQVRI-EHFG---------------LNMIKLINA-------HDSHIACFTLTLDGLLLATAST  236 (411)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~i~i-~~~~---------------~~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~  236 (411)
                      +...+           ||+|.. -.+.               ++.+..+..       ....|-+|+.+.+..+++..+-
T Consensus       231 ld~g~-----------dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP  299 (366)
T COG3490         231 LDIGR-----------DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP  299 (366)
T ss_pred             eeeCC-----------CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC
Confidence            33333           444443 1121               222332221       2345778888877777777777


Q ss_pred             CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198          237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF  288 (411)
Q Consensus       237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vw  288 (411)
                      .|+...+||..+|..+......    ....++-  ...-+++.+.+|.|.++
T Consensus       300 ~GN~~vi~da~tG~vv~~a~l~----daaGva~--~~~gf~vssg~G~~~~~  345 (366)
T COG3490         300 RGNRAVIWDAATGAVVSEAALP----DAAGVAA--AKGGFAVSSGQGRIIFY  345 (366)
T ss_pred             CCCeEEEEEcCCCcEEeccccc----cccccee--ccCceEEecCCceEEec
Confidence            7665889999999987544321    2233333  33346677788888887

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.84  E-value=0.016  Score=51.86  Aligned_cols=198  Identities=12%  Similarity=0.080  Sum_probs=118.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEe-------------ecCCCCEEEEEEe---ccCCeEEEEecCCC
Q 015198           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRR-------------DLKSGGFRIVEML---FRCNILALVGAGDN  108 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~---~~~~~~~l~s~~~d  108 (411)
                      ..|..+...++-+.|++-+|+.+.+++++........             .+ .....+..+.   .......++.+.. 
T Consensus        36 ~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~va~k-  113 (275)
T PF00780_consen   36 SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL-PETKGVSFFAVNGGHEGSRRLCVAVK-  113 (275)
T ss_pred             ceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccc-cccCCeeEEeeccccccceEEEEEEC-
Confidence            3499999999988888888999999998754433311             11 1112222333   2233344444333 


Q ss_pred             CCCCCCeEEEEECCCC-----cEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCC---------
Q 015198          109 SQYPPTKVIIWDDHQS-----RCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANL---------  174 (411)
Q Consensus       109 ~~~~d~~i~vwd~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------  174 (411)
                           ..|.+|.....     +..+++.....+.++.|.++...++......+.|+.++.....+......         
T Consensus       114 -----k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~  188 (275)
T PF00780_consen  114 -----KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSS  188 (275)
T ss_pred             -----CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccC
Confidence                 68888875442     56677778899999999977777777888999999876654443222111         


Q ss_pred             cceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE--EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE
Q 015198          175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK--LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL  252 (411)
Q Consensus       175 ~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~  252 (411)
                      .....+..-+++.+|++-  .+-.+. -+..++..+  .+.- ......+++.  ..+|+..+. +. |.||++.+++++
T Consensus       189 ~~~~~~~~~~~~e~Ll~~--~~~g~f-v~~~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~-iEV~~~~~~~lv  260 (275)
T PF00780_consen  189 SKPLGIFQLSDNEFLLCY--DNIGVF-VNKNGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NS-IEVRSLETGELV  260 (275)
T ss_pred             CCceEEEEeCCceEEEEe--cceEEE-EcCCCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CE-EEEEECcCCcEE
Confidence            112222222334555542  232233 334444333  3332 2344556653  346666554 56 999999999999


Q ss_pred             EEEeC
Q 015198          253 QEVRR  257 (411)
Q Consensus       253 ~~~~~  257 (411)
                      +.+..
T Consensus       261 Q~i~~  265 (275)
T PF00780_consen  261 QTIPL  265 (275)
T ss_pred             EEEEC
Confidence            88885

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.83  E-value=0.023  Score=53.86  Aligned_cols=168  Identities=13%  Similarity=0.194  Sum_probs=91.4

Q ss_pred             eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEec--cCCCcc---eEEEccCCCc
Q 015198          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIET--LANLRG---LCCLSHHSST  186 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~  186 (411)
                      .|.+|+ ..|+.+..+. ..+.|.++.|+.+..+++  .||.+++||+.. +....+..  ....+.   +........|
T Consensus        62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCCC
Confidence            589999 6788888877 348999999999888777  899999999863 33111111  111111   1111222234


Q ss_pred             eEEEEecCCCCeEEE-EEcCCc-ceEEE---ec-------cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE
Q 015198          187 SVLACPGLQRGQVRI-EHFGLN-MIKLI---NA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i-~~~~~~-~~~~~---~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (411)
                       +++.+  .++.+.+ .+.... ..+.+   ..       +........++.+....+....++. +.+.+-...+.   
T Consensus       140 -ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~---  212 (410)
T PF04841_consen  140 -IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ---  212 (410)
T ss_pred             -EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc---
Confidence             33333  3445555 333221 11111   11       0000000223334444444444444 54333222111   


Q ss_pred             EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      +.   ..+++..++.||+|++||.-..+|.+.|...+-.+
T Consensus       213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~  249 (410)
T PF04841_consen  213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE  249 (410)
T ss_pred             cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence            11   23579999999999999999999999888765544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.0011  Score=59.40  Aligned_cols=113  Identities=19%  Similarity=0.143  Sum_probs=77.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CC----------------cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE-EEEe
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SC----------------GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVG  104 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg----------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s  104 (411)
                      |...-.++.+++...++..+. -.                .+++.+..+.+...  -++.+...|..++|+|... ++..
T Consensus       134 h~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~qa~lpGvGv~~l~~~~fkssq--~lp~~g~~IrdlafSp~~~GLl~~  211 (463)
T KOG1645|consen  134 HKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSGQALLPGVGVQKLESHDFKSSQ--ILPGEGSFIRDLAFSPFNEGLLGL  211 (463)
T ss_pred             hcccceeeeecCCceEEecccccceeeeeccchhhcCCccceEEeccCCcchhh--cccccchhhhhhccCccccceeee
Confidence            556666777777655554433 11                13333333322211  2346677788889998655 4555


Q ss_pred             cCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCc
Q 015198          105 AGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDL  162 (411)
Q Consensus       105 ~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~  162 (411)
                      ++.+     ..|+|.|+++..++..+.....+++++|.-|....+    .+|.|++||++..
T Consensus       212 asl~-----nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  212 ASLG-----NKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             eccC-----ceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            5655     999999999999999998779999999998776555    6899999999754

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.79  E-value=0.025  Score=53.94  Aligned_cols=242  Identities=13%  Similarity=0.097  Sum_probs=124.8

Q ss_pred             CeEEEEEcCCCCEEEEEe--CCc----EEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC------C
Q 015198           46 ELISVSWNQDYGCFAAGT--SCG----FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP------P  113 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~--dg~----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~------d  113 (411)
                      .+...+++|||++||.+-  .|.    ++++|+++++. +...+.  ......+.|.+++..++....+....      .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-l~d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-LPDGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE-EEEEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC-cCCccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            344688999999999775  444    89999998543 332221  11122277777743333322221111      4


Q ss_pred             CeEEEEECCCCcE--EEEEe--ecCc-eeEEEEcCCeEEEE------Ec-CeEEEEEcCCc----eeeEEEeccCCCcce
Q 015198          114 TKVIIWDDHQSRC--IGEFA--FRSD-VRSVKLSRDRIVVV------LE-HKIYVYSFVDL----KLLHQIETLANLRGL  177 (411)
Q Consensus       114 ~~i~vwd~~~~~~--~~~~~--~~~~-i~~~~~~~~~~~~~------~d-g~i~iwd~~~~----~~~~~~~~~~~~~~~  177 (411)
                      ..|+.|.+.+...  ...+.  .... ...+..++|+++++      .+ ..+++.|+..+    .....+........ 
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~-  280 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE-  280 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E-
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE-
Confidence            6799999877643  23444  2233 66888999998877      24 67899998764    23333333222111 


Q ss_pred             EEEccCCCceEEEEecC--CCCeEEEEEcCC-c---ceEEEecccc--ceeEEEecCCCCEEEE-EcCCCe-EEEEEECC
Q 015198          178 CCLSHHSSTSVLACPGL--QRGQVRIEHFGL-N---MIKLINAHDS--HIACFTLTLDGLLLAT-ASTRGT-LIRIFNTV  247 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g~--~dg~i~i~~~~~-~---~~~~~~~~~~--~i~~l~~sp~g~~l~s-~s~dg~-~I~vwd~~  247 (411)
                      ..+...++ .+++.+..  ..+.|..-+... .   ....+..+..  .+..+..  .+.+|+. ...++. .|+++++.
T Consensus       281 ~~v~~~~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  281 YYVDHHGD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEEETT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEccCC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence            11212222 33333321  223333333322 2   1224455554  3444443  4444444 333332 38899987


Q ss_pred             CCceEEEEeCCCCCcceEEEEeCCCCCEEEE--EeC--CCcEEEEEcccccc
Q 015198          248 DGTRLQEVRRGVDRAEIYSIALSPNVQWLAV--ASD--KGTVHIFSLRVRVV  295 (411)
Q Consensus       248 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s--~s~--dg~I~vwd~~~~~~  295 (411)
                      .+.....+... ..+.|..+...+++..+..  .+.  -++++.||+.+++.
T Consensus       358 ~~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  358 DGKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             -TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CCcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            45555566543 3445677776676664432  222  24788889988864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.029  Score=50.59  Aligned_cols=214  Identities=14%  Similarity=0.060  Sum_probs=122.9

Q ss_pred             EEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEE-EeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           49 SVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        49 ~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      ...|.++...|+-..  .+.|.-|+..+.+... ...   +..+.. ......+.++++.        ..+.+++.+++.
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~---p~~~~~~~~~d~~g~Lv~~~--------~g~~~~~~~~~~   96 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS---PGGFSSGALIDAGGRLIACE--------HGVRLLDPDTGG   96 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC---CCCcccceeecCCCeEEEEc--------cccEEEeccCCc
Confidence            345778888666655  8888888877543322 211   222222 3344455555442        566777776665


Q ss_pred             EEEEEe------ecCceeEEEEcCCeEEEEEc--------------CeEEEEEcCCceeeEEEeccCCCcceEEEccCCC
Q 015198          126 CIGEFA------FRSDVRSVKLSRDRIVVVLE--------------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (411)
Q Consensus       126 ~~~~~~------~~~~i~~~~~~~~~~~~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (411)
                      .+..+.      .....+.....|+|.+.+.+              |.|+.+|. .+..++.+..+-.  ..-.++++|+
T Consensus        97 ~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~--~~NGla~SpD  173 (307)
T COG3386          97 KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT--IPNGLAFSPD  173 (307)
T ss_pred             eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE--ecCceEECCC
Confidence            533332      13556788889998888722              23444443 4444444443222  2223445555


Q ss_pred             ceEEEEecCCCCeEEEEEcC---C----c-ceEEEeccccceeEEEecCCCCEEEEEcCCC-eEEEEEECCCCceEEEEe
Q 015198          186 TSVLACPGLQRGQVRIEHFG---L----N-MIKLINAHDSHIACFTLTLDGLLLATASTRG-TLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       186 ~~~l~~~g~~dg~i~i~~~~---~----~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~~I~vwd~~~~~~~~~~~  256 (411)
                      ++.|.++-+..+.|.-+...   +    + ....+....+..-.++...+|.+-+++-..| . |.+|+.. |+++..+.
T Consensus       174 g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~  251 (307)
T COG3386         174 GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIK  251 (307)
T ss_pred             CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEE
Confidence            55666655555666664443   1    1 1122223445566778888898776555554 6 9999976 99999888


Q ss_pred             CCCCCcceEEEEeC-CCCCEEEEEeC
Q 015198          257 RGVDRAEIYSIALS-PNVQWLAVASD  281 (411)
Q Consensus       257 ~~~~~~~v~~l~~s-pdg~~l~s~s~  281 (411)
                      .  ....+++++|- ++.+.|.+.+.
T Consensus       252 l--P~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         252 L--PVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             C--CCCCCccceEeCCCcCEEEEEec
Confidence            6  33578888886 44555544443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.75  E-value=2.1e-05  Score=76.75  Aligned_cols=189  Identities=10%  Similarity=0.040  Sum_probs=129.7

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-----EcCeEEE
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----LEHKIYV  156 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-----~dg~i~i  156 (411)
                      ++.+.....++.|+.+...++.|...     |.|+++++.+|....... |...|+.+.-+.+|....     ..--..+
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~-----Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHA-----GEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeecc-----ceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            45677788899999988888888777     999999999999888887 999999999999987776     2234678


Q ss_pred             EEcC-CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEE-Ee---ccccceeEEEecCCCCE
Q 015198          157 YSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKL-IN---AHDSHIACFTLTLDGLL  230 (411)
Q Consensus       157 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~-~~---~~~~~i~~l~~sp~g~~  230 (411)
                      |++. ++...+.+...    ..+.|+-+-....+   |.......+|+... .++.+ +.   +....-++..|+|+..+
T Consensus      1172 W~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~---gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED----KAVKFSNSLQFRAL---GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             hccccccCcccccccc----ceeehhhhHHHHHh---cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            9984 35555555432    23444444322222   43344566666543 33333 21   22333367889999988


Q ss_pred             EEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198          231 LATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       231 l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      ++   +||.   +||++..+.++.|..  ....+ .=.|+|.|..++.-+     .|||+++-+-.+
T Consensus      1245 Il---ndGv---LWDvR~~~aIh~FD~--ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1245 IL---NDGV---LWDVRIPEAIHRFDQ--FTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred             Ee---eCce---eeeeccHHHHhhhhh--heecc-cccccCCCceEEeec-----hhhhhHHHHHHh
Confidence            77   6776   899998888877765  22222 235899999887754     589999877554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.71  E-value=0.02  Score=52.92  Aligned_cols=235  Identities=15%  Similarity=0.112  Sum_probs=102.0

Q ss_pred             CCeEEEEEc-----------CCCCEEEEEe--CCcEEEEecCCC--cceEEeecC-------CCCEEEEEEeccCCeEEE
Q 015198           45 IELISVSWN-----------QDYGCFAAGT--SCGFRIYNCEPF--KETFRRDLK-------SGGFRIVEMLFRCNILAL  102 (411)
Q Consensus        45 ~~V~~l~~s-----------~~g~~la~g~--dg~i~iw~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~l  102 (411)
                      +.....-|+           .+.++|++.+  .+.|.|.|+.+.  +..+.+.+.       .+-.......--+++.++
T Consensus        65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im  144 (461)
T PF05694_consen   65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM  144 (461)
T ss_dssp             --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred             CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence            455666665           2467888877  899999998743  222222221       111222223334667555


Q ss_pred             EecCCCC-CCCCCeEEEEECCCCcEEEEEee----cCceeEEEEcCCeEEEE-----------------------EcCeE
Q 015198          103 VGAGDNS-QYPPTKVIIWDDHQSRCIGEFAF----RSDVRSVKLSRDRIVVV-----------------------LEHKI  154 (411)
Q Consensus       103 ~s~~~d~-~~~d~~i~vwd~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~-----------------------~dg~i  154 (411)
                      +++-.++ ....|.+.+.|-++.+.+.....    ..--..+-|.|....++                       ...++
T Consensus       145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l  224 (461)
T PF05694_consen  145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL  224 (461)
T ss_dssp             EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred             EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence            5432221 12347888888777777766652    22234455566544443                       24689


Q ss_pred             EEEEcCCceeeEEEeccCCCcce--EEEccCCCceEEEEecCCCCeEEEEEc-C-C----cceEEEecc-----------
Q 015198          155 YVYSFVDLKLLHQIETLANLRGL--CCLSHHSSTSVLACPGLQRGQVRIEHF-G-L----NMIKLINAH-----------  215 (411)
Q Consensus       155 ~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~dg~i~i~~~-~-~----~~~~~~~~~-----------  215 (411)
                      ++||+.+.+.++.+.........  +.+..+|+..+=++.+--..+|..|-. . +    +.+..+...           
T Consensus       225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml  304 (461)
T PF05694_consen  225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML  304 (461)
T ss_dssp             EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred             EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence            99999999999999876543222  445556654432222223445555433 2 1    222222211           


Q ss_pred             ------ccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCc---eEEEEeCC--------------CCCcceEEEEeCC
Q 015198          216 ------DSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGT---RLQEVRRG--------------VDRAEIYSIALSP  271 (411)
Q Consensus       216 ------~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~---~~~~~~~~--------------~~~~~v~~l~~sp  271 (411)
                            ..-|+.|.+|.|.++|..+. ..|. |+.||+.+-.   +..++..+              .-.+...-+..|.
T Consensus       305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~  383 (461)
T PF05694_consen  305 KPFGAVPPLITDILISLDDRFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL  383 (461)
T ss_dssp             GGG-EE------EEE-TTS-EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-T
T ss_pred             cccccCCCceEeEEEccCCCEEEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEcc
Confidence                  23478999999999887655 5787 9999997642   33332211              0112346788999


Q ss_pred             CCCEEEEEe
Q 015198          272 NVQWLAVAS  280 (411)
Q Consensus       272 dg~~l~s~s  280 (411)
                      ||+.|+..+
T Consensus       384 DGkRlYvTn  392 (461)
T PF05694_consen  384 DGKRLYVTN  392 (461)
T ss_dssp             TSSEEEEE-
T ss_pred             CCeEEEEEe
Confidence            999887665

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.64  E-value=0.056  Score=50.65  Aligned_cols=79  Identities=15%  Similarity=0.202  Sum_probs=55.6

Q ss_pred             ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe-CCC----------------CCE-EE
Q 015198          216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL-SPN----------------VQW-LA  277 (411)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~-spd----------------g~~-l~  277 (411)
                      ...+.+++.+|++++.|+...-|. |.++|+.++..++.+++..+. .+.-+.. ...                ..+ ++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYRdA-qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYRDA-QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCccc-eEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            446888999999999998888888 999999999888888774221 1111111 111                112 33


Q ss_pred             EEeCCCcEEEEEccccccC
Q 015198          278 VASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       278 s~s~dg~I~vwd~~~~~~~  296 (411)
                      -+-.-|.|.||.+++|.+.
T Consensus       385 yaprRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRV  403 (415)
T ss_pred             EeccCCeEEEEecCCCCEE
Confidence            4667889999999999865

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.64  E-value=0.0076  Score=56.07  Aligned_cols=230  Identities=11%  Similarity=0.038  Sum_probs=125.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCC----------------CEEEEEEeccCCeEEEEecCC
Q 015198           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSG----------------GFRIVEMLFRCNILALVGAGD  107 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~s~~~  107 (411)
                      ...+....|+|+|+.+|...++.|.+++..+.. .......+.                -..-..+.|+|++..|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~-~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ-ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE-EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECCCCC-eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            567889999999999999999999999886542 222221110                001134557777655553322


Q ss_pred             CCC----------------C---------------CCCeEEEEECCCCcEEE-EEe-----ecCceeEEEEcCCeE-EEE
Q 015198          108 NSQ----------------Y---------------PPTKVIIWDDHQSRCIG-EFA-----FRSDVRSVKLSRDRI-VVV  149 (411)
Q Consensus       108 d~~----------------~---------------~d~~i~vwd~~~~~~~~-~~~-----~~~~i~~~~~~~~~~-~~~  149 (411)
                      |..                |               ..-.+.|+|+.+++... ...     ...-+..+.|.+++. +++
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            200                0               11255667777765432 111     234577888999888 444


Q ss_pred             -------EcCeEEEEEcCCceeeEEEeccCC-C---cceEEEc-cCCCceEEEEecCCCCeEEE--EEcCCcceEEEecc
Q 015198          150 -------LEHKIYVYSFVDLKLLHQIETLAN-L---RGLCCLS-HHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAH  215 (411)
Q Consensus       150 -------~dg~i~iwd~~~~~~~~~~~~~~~-~---~~~~~~~-~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~  215 (411)
                             ....+.++|..+++....+..... -   .....+. .+.. .++.. ...+|.-.|  .+..+.....+...
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~-~~l~~-s~~~G~~hly~~~~~~~~~~~lT~G  278 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN-EFLWI-SERDGYRHLYLYDLDGGKPRQLTSG  278 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS-EEEEE-EETTSSEEEEEEETTSSEEEESS-S
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC-EEEEE-EEcCCCcEEEEEcccccceeccccC
Confidence                   134577778877655433332211 1   1223332 3333 33333 336776666  55556666666666


Q ss_pred             ccceeE-EEecCCCCEEE-EEcCC----CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE
Q 015198          216 DSHIAC-FTLTLDGLLLA-TASTR----GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (411)
Q Consensus       216 ~~~i~~-l~~sp~g~~l~-s~s~d----g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (411)
                      .-.|.. +.++++++.|. ++..+    .. |+.-++..+..+..+...  ......+.|||+|++++..
T Consensus       279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~-lY~v~~~~~~~~~~LT~~--~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  279 DWEVTSILGWDEDNNRIYFTANGDNPGERH-LYRVSLDSGGEPKCLTCE--DGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             SS-EEEEEEEECTSSEEEEEESSGGTTSBE-EEEEETTETTEEEESSTT--SSTTEEEEE-TTSSEEEEE
T ss_pred             ceeecccceEcCCCCEEEEEecCCCCCceE-EEEEEeCCCCCeEeccCC--CCCceEEEECCCCCEEEEE
Confidence            666744 67788877544 55542    24 666677624444555542  2222689999999987744

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.64  E-value=0.0062  Score=57.72  Aligned_cols=73  Identities=15%  Similarity=0.228  Sum_probs=54.8

Q ss_pred             ceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce
Q 015198          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR  251 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~  251 (411)
                      .+++.+++++...++. |+.||.|.+|+...+..... ...-..+.++|+|+|.++++|+..|. +.+||+.-...
T Consensus       261 ~v~~ca~sp~E~kLvl-GC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALspi  333 (545)
T PF11768_consen  261 QVICCARSPSEDKLVL-GCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALSPI  333 (545)
T ss_pred             cceEEecCcccceEEE-EecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCce-EEEEEeecCcc
Confidence            3445555555556655 77999999998776644433 44566789999999999999999999 99999865443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.62  E-value=0.002  Score=61.95  Aligned_cols=153  Identities=12%  Similarity=0.212  Sum_probs=88.7

Q ss_pred             CceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc--
Q 015198          134 SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM--  208 (411)
Q Consensus       134 ~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~--  208 (411)
                      ..|.--+++..+.+++   .-|.+++|+-..++.. .++........+....++...++| .|+..|.|.++..+...  
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvA-agt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVA-AGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhh-hhcCCceEEeehhhccCCC
Confidence            3343344455555555   6799999996555443 332211222334444444444444 57788999885544321  


Q ss_pred             ----eEEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC----ceEEEEeCCCCCcceEEEEeCCCCCEEEEE
Q 015198          209 ----IKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----TRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (411)
Q Consensus       209 ----~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (411)
                          +... +.|...|++++|++++..+++|...|. |.+-.+.+.    ...+.+..  ....|-.|... ++.+|+ +
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk-v~~~~L~s~~~~~~~~q~il~--~ds~IVQlD~~-q~~LLV-S  186 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK-VVLTELDSRQAFLSKSQEILS--EDSEIVQLDYL-QSYLLV-S  186 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCce-EEEEEechhhhhccccceeec--cCcceEEeecc-cceehH-h
Confidence                1111 247789999999999999999999999 888877662    11122222  34567666654 333343 3


Q ss_pred             eCCCcEEEEEccccc
Q 015198          280 SDKGTVHIFSLRVRV  294 (411)
Q Consensus       280 s~dg~I~vwd~~~~~  294 (411)
                      +.-. ..+++++.++
T Consensus       187 tl~r-~~Lc~tE~et  200 (726)
T KOG3621|consen  187 TLTR-CILCQTEAET  200 (726)
T ss_pred             hhhh-hheeecchhH
Confidence            3333 4566666554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.62  E-value=0.024  Score=53.12  Aligned_cols=235  Identities=16%  Similarity=0.095  Sum_probs=114.6

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC---
Q 015198           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD---  121 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~---  121 (411)
                      .|+.++|.++..-|++|. .|.|.||.+...+..-...    ......+.+.+    +-.....    ...+-|-+.   
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~----~~~~~~~~~~~----~~~~~~~----~~l~di~~r~~~   70 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE----QPPDLDYNFRR----FSLNNSP----GKLTDISDRAPP   70 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------S------GGGSS-----SEEE-GGG--T
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccC----CCcccCccccc----ccccCCC----cceEEehhhCCc
Confidence            589999999988999999 9999999887533211000    00111111000    0000000    011111111   


Q ss_pred             --CCC-cEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccC------C--CcceEEEc---cCC
Q 015198          122 --HQS-RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLA------N--LRGLCCLS---HHS  184 (411)
Q Consensus       122 --~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~------~--~~~~~~~~---~~~  184 (411)
                        +.| .+...+. ..++|++++.+.-|...+  .+|.+.|.|++....+..-....      .  .+..+.|.   ...
T Consensus        71 ~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~  150 (395)
T PF08596_consen   71 SLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG  150 (395)
T ss_dssp             T-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred             ccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence              111 1222223 478999999998888777  68999999998888776643222      1  11122222   223


Q ss_pred             C--ceEEEEecCCCCeEEEEEcC----Ccc----eEEEeccccceeEEE-ecCC-----------------C----CEEE
Q 015198          185 S--TSVLACPGLQRGQVRIEHFG----LNM----IKLINAHDSHIACFT-LTLD-----------------G----LLLA  232 (411)
Q Consensus       185 ~--~~~l~~~g~~dg~i~i~~~~----~~~----~~~~~~~~~~i~~l~-~sp~-----------------g----~~l~  232 (411)
                      |  ...++.+|...|.+.++...    +.-    ......+.++|..|. |+.+                 |    .+++
T Consensus       151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV  230 (395)
T PF08596_consen  151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV  230 (395)
T ss_dssp             SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred             CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence            3  23444557788998886433    111    111224556665554 3221                 1    1444


Q ss_pred             EEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC-----CCCCEEEEEeCCCcEEEEEccccccC
Q 015198          233 TASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS-----PNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       233 s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s-----pdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +++ +.. |+++...+.+.......  .......+.+-     ..+..|++-..+|.|++|.+..-+..
T Consensus       231 vvS-e~~-irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  231 VVS-ESD-IRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             EE--SSE-EEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             EEc-ccc-eEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence            444 455 99999988877665543  32233344442     35667888899999999999876643

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.61  E-value=0.039  Score=48.03  Aligned_cols=197  Identities=14%  Similarity=0.024  Sum_probs=96.2

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      .+.+-...+..|+|+|+...|++-.  .+.|..++.+ ++.+.+..+ .+....-.+.+..++.++++...+     +.+
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-~g~~D~EgI~y~g~~~~vl~~Er~-----~~L   88 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-DGFGDYEGITYLGNGRYVLSEERD-----QRL   88 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--SS-SSEEEEEE-STTEEEEEETTT-----TEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-CCCCCceeEEEECCCEEEEEEcCC-----CcE
Confidence            3556666799999999866555444  6666656654 244444445 333445566777888888877666     899


Q ss_pred             EEEECCCCc------EEEEEe------ecCceeEEEEcCCe-EEEE--EcCeEEEEEcCC---ceeeEEEec--cC----
Q 015198          117 IIWDDHQSR------CIGEFA------FRSDVRSVKLSRDR-IVVV--LEHKIYVYSFVD---LKLLHQIET--LA----  172 (411)
Q Consensus       117 ~vwd~~~~~------~~~~~~------~~~~i~~~~~~~~~-~~~~--~dg~i~iwd~~~---~~~~~~~~~--~~----  172 (411)
                      .++++....      ....+.      .+..+..++|++.+ .+++  ...-..+|.+..   ...+.....  ..    
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            988873321      122232      23568999999853 3333  343344444432   112211110  00    


Q ss_pred             CCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccc---------cceeEEEecCCCCEEEEEcCCCeEEEE
Q 015198          173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHD---------SHIACFTLTLDGLLLATASTRGTLIRI  243 (411)
Q Consensus       173 ~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~---------~~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (411)
                      ......+++.++....|..-+.....|...+..++.+..+.-..         ...-.|+|.++|++.++ ++-+. .++
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNl-fy~  246 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNL-FYR  246 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTE-EEE
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCce-EEE
Confidence            11122334444443333333456777777888888766654332         24678999999975554 45555 555


Q ss_pred             E
Q 015198          244 F  244 (411)
Q Consensus       244 w  244 (411)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            4

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.59  E-value=0.088  Score=51.66  Aligned_cols=235  Identities=10%  Similarity=0.025  Sum_probs=128.6

Q ss_pred             CEEEEEe-CCcEEEEecCCCcceEEeecCCCCE--EEEE-EeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee
Q 015198           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--RIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF  132 (411)
Q Consensus        57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~  132 (411)
                      ..+++++ ++.+.-.|.++++.+....+.....  .+.. .... ++.+++..+....-.++.|..+|.++|+.+..+..
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            3556666 8888888988888777665421111  1111 1111 34444443210001238999999999998887652


Q ss_pred             --cC------------------------------ce-eEEEEcCCeEEEE--E------c-----------CeEEEEEcC
Q 015198          133 --RS------------------------------DV-RSVKLSRDRIVVV--L------E-----------HKIYVYSFV  160 (411)
Q Consensus       133 --~~------------------------------~i-~~~~~~~~~~~~~--~------d-----------g~i~iwd~~  160 (411)
                        ..                              .+ ..+.+.+...++.  .      +           ..|.-.|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence              11                              01 1234555433333  1      1           267888999


Q ss_pred             CceeeEEEeccCCCcc---------eEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEE--------Ee---c-cc-c
Q 015198          161 DLKLLHQIETLANLRG---------LCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKL--------IN---A-HD-S  217 (411)
Q Consensus       161 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~--------~~---~-~~-~  217 (411)
                      +|+....++...+...         .+.+..++...-++..+..+|.+++.+. +++.+..        ..   . .. .
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~  359 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR  359 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence            9999888765433222         1222223322234445778999998444 4554311        10   0 00 0


Q ss_pred             c----------------------------eeEEEecCCCCEEEEEcCC--------------------------------
Q 015198          218 H----------------------------IACFTLTLDGLLLATASTR--------------------------------  237 (411)
Q Consensus       218 ~----------------------------i~~l~~sp~g~~l~s~s~d--------------------------------  237 (411)
                      +                            -..++++|+..+++....+                                
T Consensus       360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~  439 (527)
T TIGR03075       360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH  439 (527)
T ss_pred             CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence            0                            0125566665555433222                                


Q ss_pred             -CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          238 -GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       238 -g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                       |. |.-+|+.+|+.+........  ...+. +.-.+.+++.++.+|.++.+|.++|+..
T Consensus       440 ~g~-l~AiD~~tGk~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       440 MGS-LIAWDPITGKIVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             cee-EEEEeCCCCceeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence             45 78888889988776654211  11111 1124557777888999999999999864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.55  E-value=0.059  Score=48.39  Aligned_cols=234  Identities=15%  Similarity=0.150  Sum_probs=107.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCC----CCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS----GGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      -...+..|.|..+..-+++|..+.  |+....+.+........    .......+.|..+..++++ ..      +. .+
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-~~------g~-ll   84 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-EP------GL-LL   84 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-ET------TE-EE
T ss_pred             CCCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-CC------ce-EE
Confidence            455899999997777788887775  55555545444432111    1234556667666555543 21      43 33


Q ss_pred             EECCCCcEEEEEe----ecCceeEEEE-cCCeEEEE-EcCeEEEEEcCC-ceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          119 WDDHQSRCIGEFA----FRSDVRSVKL-SRDRIVVV-LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       119 wd~~~~~~~~~~~----~~~~i~~~~~-~~~~~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      .-...|+.=..+.    .+.....+.. .+....++ ..|.  ||...+ |+.=+.+.. .....+..+...+++.++++
T Consensus        85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~-~~~gs~~~~~r~~dG~~vav  161 (302)
T PF14870_consen   85 HTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVS-ETSGSINDITRSSDGRYVAV  161 (302)
T ss_dssp             EESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEE
T ss_pred             EecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEccc-CCcceeEeEEECCCCcEEEE
Confidence            3334454333332    2233333333 33333333 2333  333322 222122211 11224556667788888876


Q ss_pred             ecCCCCeEEE-EEcCCcceEEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEEC-CCCceEEE--EeCCCCCcceEE
Q 015198          192 PGLQRGQVRI-EHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT-VDGTRLQE--VRRGVDRAEIYS  266 (411)
Q Consensus       192 ~g~~dg~i~i-~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~-~~~~~~~~--~~~~~~~~~v~~  266 (411)
                      +  ..|.+++ |+.....-... ..-...|..|.|.|++.+.+.+ ..|. |++=+. ...+....  .......-.+..
T Consensus       162 s--~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld  237 (302)
T PF14870_consen  162 S--SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILD  237 (302)
T ss_dssp             E--TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEE
T ss_pred             E--CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEE
Confidence            4  5677777 76654433333 3356889999999998876655 6777 777762 22222111  111112225889


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          267 IALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       267 l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      ++|.+++...++|+ .|. .+...+.|+.
T Consensus       238 ~a~~~~~~~wa~gg-~G~-l~~S~DgGkt  264 (302)
T PF14870_consen  238 LAYRPPNEIWAVGG-SGT-LLVSTDGGKT  264 (302)
T ss_dssp             EEESSSS-EEEEES-TT--EEEESSTTSS
T ss_pred             EEecCCCCEEEEeC-Ccc-EEEeCCCCcc
Confidence            99999887777655 442 4445555553

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.0079  Score=58.88  Aligned_cols=152  Identities=12%  Similarity=0.019  Sum_probs=99.0

Q ss_pred             ccCCCCCCeEEEEEcCC-------------CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC-----e
Q 015198           39 FSDVDEIELISVSWNQD-------------YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-----I   99 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~-------------g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~   99 (411)
                      .+..|.+.|.-..+.-+             |+++++|+ ||.|.|-.+.+.+......+   ...+..++++|+     .
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~s  129 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQS  129 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec---CCcceeEEeccchhhhhh
Confidence            35667777776666555             99999999 99999999888777666655   334555566665     3


Q ss_pred             EEEEecCCCCCCCCCeEEEEE---CCCCcEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEeccCCCc-
Q 015198          100 LALVGAGDNSQYPPTKVIIWD---DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLR-  175 (411)
Q Consensus       100 ~~l~s~~~d~~~~d~~i~vwd---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-  175 (411)
                      ..+++|+..     | +.++.   +.....+..-...++|.++.|..+-...+.|-.|++||+.+.+.+..++...... 
T Consensus       130 k~fv~GG~a-----g-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R  203 (846)
T KOG2066|consen  130 KQFVSGGMA-----G-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVR  203 (846)
T ss_pred             hheeecCcc-----e-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCCCC
Confidence            566777664     6 77776   2223333222268999999998765555589999999999888877765443222 


Q ss_pred             ---ceEEEccCCCceEEEEecCCCCeEEEE
Q 015198          176 ---GLCCLSHHSSTSVLACPGLQRGQVRIE  202 (411)
Q Consensus       176 ---~~~~~~~~~~~~~l~~~g~~dg~i~i~  202 (411)
                         ....+.|.++..+++  | ...+|+|-
T Consensus       204 ~e~fpphl~W~~~~~LVI--G-W~d~v~i~  230 (846)
T KOG2066|consen  204 PELFPPHLHWQDEDRLVI--G-WGDSVKIC  230 (846)
T ss_pred             cccCCCceEecCCCeEEE--e-cCCeEEEE
Confidence               223445555544442  3 34466663

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.50  E-value=0.02  Score=53.34  Aligned_cols=170  Identities=11%  Similarity=0.063  Sum_probs=90.0

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCC---------------cc
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANL---------------RG  176 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~---------------~~  176 (411)
                      +.+.++|+.+++..........+....|+|+|..++  .++.|+++++.+++..+.-......               ..
T Consensus        23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~  102 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR  102 (353)
T ss_dssp             EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred             eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence            789999999876555444578899999999999998  8999999998777443222111000               01


Q ss_pred             eEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEec--ccc---ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce
Q 015198          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--HDS---HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR  251 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~--~~~---~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~  251 (411)
                      ..++-|+|+++.||+.-..+..|..       +.....  ...   .+..+.+-.-|.-...    -. +.|+|+.+++.
T Consensus       103 ~~~~~WSpd~~~la~~~~d~~~v~~-------~~~~~~~~~~~~yp~~~~~~YPk~G~~np~----v~-l~v~~~~~~~~  170 (353)
T PF00930_consen  103 RSAVWWSPDSKYLAFLRFDEREVPE-------YPLPDYSPPDSQYPEVESIRYPKAGDPNPR----VS-LFVVDLASGKT  170 (353)
T ss_dssp             SBSEEE-TTSSEEEEEEEE-TTS-E-------EEEEEESSSTESS-EEEEEE--BTTS---E----EE-EEEEESSSTCC
T ss_pred             ccceEECCCCCEEEEEEECCcCCce-------EEeeccCCccccCCcccccccCCCCCcCCc----eE-EEEEECCCCcE
Confidence            1234455666666653323322222       111111  111   2333333222221111    12 67789988875


Q ss_pred             EE-EEeC--CCCCcceEEEEeCCCCCEEEEE--eCCC---cEEEEEcccccc
Q 015198          252 LQ-EVRR--GVDRAEIYSIALSPNVQWLAVA--SDKG---TVHIFSLRVRVV  295 (411)
Q Consensus       252 ~~-~~~~--~~~~~~v~~l~~spdg~~l~s~--s~dg---~I~vwd~~~~~~  295 (411)
                      .. ....  ......+..+.|.++++.|+..  ..+.   .+.++|..++..
T Consensus       171 ~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~  222 (353)
T PF00930_consen  171 TELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET  222 (353)
T ss_dssp             CEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred             EEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence            32 2220  1134578999999999844433  2222   366667766553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.48  E-value=0.00056  Score=65.59  Aligned_cols=113  Identities=15%  Similarity=0.180  Sum_probs=85.4

Q ss_pred             ceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEec--cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce--
Q 015198          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR--  251 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~--  251 (411)
                      ...++....  .+++. |+.-|.++++...+.....++.  ..+.+..+.++++..++|.|+..|. |.++-+..+..  
T Consensus        37 ~lTc~dst~--~~l~~-GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   37 KLTCVDATE--EYLAM-GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELPRD  112 (726)
T ss_pred             EEEEeecCC--ceEEE-ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCCCc
Confidence            444555443  56665 7789999999988877666654  5566777888999888899998898 99998766432  


Q ss_pred             -EEEE-eCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          252 -LQEV-RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       252 -~~~~-~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                       +..- ....|...|++++|++|+..+++|...|+|..-.++.
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence             1111 1122677999999999999999999999999999888

>smart00320 WD40 WD40 repeats

Probab=97.46  E-value=0.00045  Score=40.04  Aligned_cols=38  Identities=32%  Similarity=0.587  Sum_probs=32.2

Q ss_pred             ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      +.+..+..  |...|.++.|.+++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKG--HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEe--cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44555655  677899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.00058  Score=64.71  Aligned_cols=77  Identities=19%  Similarity=0.182  Sum_probs=66.7

Q ss_pred             cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE-EEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY-SIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~-~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      ..|..+.|+|.-.+||.+..+|. |.+..++ .+.+.++..  +...++ +++|.|||+.||+|-.||+|++.|+.++..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~qRlwtip~--p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGE-LLIHRLN-WQRLWTIPI--PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEEcCccchhheeccCCc-EEEEEec-cceeEeccC--CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            45677899999999999999999 9999886 777788875  333455 999999999999999999999999999987


Q ss_pred             CC
Q 015198          296 GE  297 (411)
Q Consensus       296 ~~  297 (411)
                      .+
T Consensus        97 l~   98 (665)
T KOG4640|consen   97 LV   98 (665)
T ss_pred             ee
Confidence            65

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.44  E-value=0.093  Score=48.22  Aligned_cols=220  Identities=12%  Similarity=0.022  Sum_probs=92.2

Q ss_pred             EEEEcCCCCEEEEEe--CCcEEEE--ecCCCcceEEeecCCCC-EEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           49 SVSWNQDYGCFAAGT--SCGFRIY--NCEPFKETFRRDLKSGG-FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        49 ~l~~s~~g~~la~g~--dg~i~iw--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      .=+|.+||+.|+.++  +|.-.+|  |+++.+. ..  |..+. ........+++...++-....     ..|+-.|+.+
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-~Q--LTdg~g~~~~g~~~s~~~~~~~Yv~~~-----~~l~~vdL~T  111 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEI-TQ--LTDGPGDNTFGGFLSPDDRALYYVKNG-----RSLRRVDLDT  111 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-EE-----SS-B-TTT-EE-TTSSEEEEEETT-----TEEEEEETTT
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEE-EE--CccCCCCCccceEEecCCCeEEEEECC-----CeEEEEECCc
Confidence            346778897776655  6665555  5555332 22  21221 111112222332222211111     6888899999


Q ss_pred             CcEEEEEeecCc-eeEEEE--cCCeEEEE-------------------------EcCeEEEEEcCCceeeEEEeccCCCc
Q 015198          124 SRCIGEFAFRSD-VRSVKL--SRDRIVVV-------------------------LEHKIYVYSFVDLKLLHQIETLANLR  175 (411)
Q Consensus       124 ~~~~~~~~~~~~-i~~~~~--~~~~~~~~-------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~  175 (411)
                      .+....+..... +-...|  +.|+..++                         ....|.-.|+.+|+....+... .-.
T Consensus       112 ~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wl  190 (386)
T PF14583_consen  112 LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWL  190 (386)
T ss_dssp             --EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-E
T ss_pred             CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccc
Confidence            887666663322 222333  44555554                         1245677788888766555432 223


Q ss_pred             ceEEEccCCCceEEEEe-cCCCC-eEEEEEcC--CcceEEEeccc--cceeEEEecCCCCEEEEE-----cCCCeEEEEE
Q 015198          176 GLCCLSHHSSTSVLACP-GLQRG-QVRIEHFG--LNMIKLINAHD--SHIACFTLTLDGLLLATA-----STRGTLIRIF  244 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~-g~~dg-~i~i~~~~--~~~~~~~~~~~--~~i~~l~~sp~g~~l~s~-----s~dg~~I~vw  244 (411)
                      .-+.++|.....++.|- |-.+. .-+||..+  +.....+..+.  ..+.-=-|.|||..|..-     +.+.. |.-+
T Consensus       191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~  269 (386)
T PF14583_consen  191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGY  269 (386)
T ss_dssp             EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE
T ss_pred             cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEee
Confidence            33445554433222221 22222 13566544  33333333222  223334588999866542     22345 7778


Q ss_pred             ECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198          245 NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK  282 (411)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d  282 (411)
                      |+.+++.......   + ....+--++||++++-=+.|
T Consensus       270 d~~t~~~~~~~~~---p-~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  270 DPDTGERRRLMEM---P-WCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             -TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred             CCCCCCceEEEeC---C-ceeeeEEcCCCCEEEecCCC
Confidence            8888876433332   1 34567778999988754443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.42  E-value=0.18  Score=51.04  Aligned_cols=230  Identities=14%  Similarity=0.189  Sum_probs=138.8

Q ss_pred             CCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEE-ecCCC--------CCCCCCeEEEEECCCCcE
Q 015198           56 YGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALV-GAGDN--------SQYPPTKVIIWDDHQSRC  126 (411)
Q Consensus        56 g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d--------~~~~d~~i~vwd~~~~~~  126 (411)
                      ...|+.+..+.+++.-++..++...+.+ .-......+++.+....+. .+..-        +.+.-..++++|-++.+.
T Consensus       684 ~d~l~~~~~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v  762 (1096)
T KOG1897|consen  684 PDSLASANGGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV  762 (1096)
T ss_pred             CceEEEecCCceEEEEecchhhcceeee-cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence            3467777788888888877665544443 2333344555665333222 22111        011124678888777776


Q ss_pred             EEEEee--cC---ceeEEEEcCC-eEEEE-------------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          127 IGEFAF--RS---DVRSVKLSRD-RIVVV-------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       127 ~~~~~~--~~---~i~~~~~~~~-~~~~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      +...++  ..   .|.+..|..| +.+++             ..|.|.+|.+..++.+.....+.-...+.++..- +++
T Consensus       763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngk  841 (1096)
T KOG1897|consen  763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGK  841 (1096)
T ss_pred             EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCe
Confidence            666552  22   3444457666 44333             2588899888764444444332222233444332 346


Q ss_pred             EEEEecCCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC--CceEEEEeCCCCCcce
Q 015198          188 VLACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD--GTRLQEVRRGVDRAEI  264 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~--~~~~~~~~~~~~~~~v  264 (411)
                      ++|.   -+..|+++.+..+ .++.-..+..++..+.+.-.|..++.|.--+. |.+...+.  |... .+....+...+
T Consensus       842 llA~---In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~eg~f~-evArD~~p~Wm  916 (1096)
T KOG1897|consen  842 LLAG---INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGDEGNFE-EVARDYNPNWM  916 (1096)
T ss_pred             EEEe---cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEeccCCceE-EeehhhCccce
Confidence            6654   4568999777665 55555678889999999999999999998887 77655443  3333 34333366678


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          265 YSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      +++.+-.+ ..++.+..+|.+.+-..++.
T Consensus       917 taveil~~-d~ylgae~~gNlf~v~~d~~  944 (1096)
T KOG1897|consen  917 TAVEILDD-DTYLGAENSGNLFTVRKDSD  944 (1096)
T ss_pred             eeEEEecC-ceEEeecccccEEEEEecCC
Confidence            88887654 45556778888888777643

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.42  E-value=0.022  Score=57.48  Aligned_cols=129  Identities=13%  Similarity=0.211  Sum_probs=87.5

Q ss_pred             CeEEEEECCCCcEEEEEeecC--ceeEEEEc-------CCeEEEE-EcCeEEEEEcCCc--eeeE-EEeccCCCcceEEE
Q 015198          114 TKVIIWDDHQSRCIGEFAFRS--DVRSVKLS-------RDRIVVV-LEHKIYVYSFVDL--KLLH-QIETLANLRGLCCL  180 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~--~i~~~~~~-------~~~~~~~-~dg~i~iwd~~~~--~~~~-~~~~~~~~~~~~~~  180 (411)
                      ..|+-.|++.|+.+.++....  +|..++-.       +...++. .++.+..||.+-.  +++. ....-.......|+
T Consensus       504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~  583 (794)
T PF08553_consen  504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF  583 (794)
T ss_pred             CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence            889999999999999998433  35554432       3344555 7899999999753  2331 11111222345677


Q ss_pred             ccCCCceEEEEecCCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198          181 SHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (411)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (411)
                      +.+.+|.+ |+ |+.+|.|++++..+. ....+.+-..+|..|..+.||++|++.+. .. +.+++.
T Consensus       584 aTt~~G~i-av-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-ty-LlLi~t  646 (794)
T PF08553_consen  584 ATTEDGYI-AV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TY-LLLIDT  646 (794)
T ss_pred             EecCCceE-EE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ce-EEEEEE
Confidence            77777744 43 779999999776553 34445677899999999999998876664 34 667764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.41  E-value=0.00054  Score=39.69  Aligned_cols=37  Identities=30%  Similarity=0.617  Sum_probs=32.8

Q ss_pred             ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          208 MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       208 ~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                      ....+..|...|.++.|++++.++++++.|+. +++||
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence            45566788899999999999999999999999 99996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.40  E-value=0.062  Score=45.25  Aligned_cols=202  Identities=14%  Similarity=0.159  Sum_probs=115.5

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCE--EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC--CCcEEEEE
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRCIGEF  130 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~--~~~~~~~~  130 (411)
                      +.++.+-- .+.|.-||... .+..+..+.....  .+.-+.-.|+... ++++..     -.|.-||..  .-....++
T Consensus        27 ~sLl~VDi~ag~v~r~D~~q-n~v~ra~ie~p~~ag~ilpv~~~~q~~~-v~~G~k-----f~i~nwd~~~~~a~v~~t~   99 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQ-NKVYRAKIEGPPSAGFILPVEGGPQEFA-VGCGSK-----FVIVNWDGVSESAKVYRTL   99 (310)
T ss_pred             ceEEEEEeccCceehhhhhh-hheEEEEEecCcceeEEEEecCCCceEE-Eeecce-----EEEEEcccccceeeeeeec
Confidence            44555555 78888899986 4444444423221  1112222233433 444332     566678732  22333332


Q ss_pred             ---e---ecCceeEEEEcCCeEEEE------------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          131 ---A---FRSDVRSVKLSRDRIVVV------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       131 ---~---~~~~i~~~~~~~~~~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                         +   .+...+.-..+|+|++.+            ..|.++.|-..  ..+..+...-.  -.-.++|+.+.+.+.+.
T Consensus       100 ~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~--IsNgl~Wd~d~K~fY~i  175 (310)
T KOG4499|consen  100 FEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVG--ISNGLAWDSDAKKFYYI  175 (310)
T ss_pred             cccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhcc--CCccccccccCcEEEEE
Confidence               1   245667778899999876            13555555432  12222221111  22356677777777777


Q ss_pred             cCCCCeEEEEEcCC--------cceEEEec---ccc-ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC
Q 015198          193 GLQRGQVRIEHFGL--------NMIKLINA---HDS-HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD  260 (411)
Q Consensus       193 g~~dg~i~i~~~~~--------~~~~~~~~---~~~-~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~  260 (411)
                      -+.+-.|.-|+++.        +.+..++.   ... .--.+++..+|.+.++.-..++ |...|..+|+.+.+++-  .
T Consensus       176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eikl--P  252 (310)
T KOG4499|consen  176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKL--P  252 (310)
T ss_pred             ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEc--C
Confidence            77777777777442        12222221   111 1234556678888887777788 99999999999999987  4


Q ss_pred             CcceEEEEeCC
Q 015198          261 RAEIYSIALSP  271 (411)
Q Consensus       261 ~~~v~~l~~sp  271 (411)
                      ...|++++|--
T Consensus       253 t~qitsccFgG  263 (310)
T KOG4499|consen  253 TPQITSCCFGG  263 (310)
T ss_pred             CCceEEEEecC
Confidence            56899999964

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.00094  Score=63.36  Aligned_cols=94  Identities=18%  Similarity=0.242  Sum_probs=73.8

Q ss_pred             cceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEecccccee-EEEecCCCCEEEEEcCCCeEEEEEECCCCceEE
Q 015198          175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIA-CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (411)
Q Consensus       175 ~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~-~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (411)
                      ..+..+.|+|.-.++|. +..+|.|.+...+.+.+..+..|...++ +++|.|||++||.|-.||+ |++.|+.++..+.
T Consensus        21 ~~i~~~ewnP~~dLiA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcCccchhhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCcee
Confidence            34555667777677776 6689999997777888888887877777 9999999999999999999 9999999998876


Q ss_pred             EEeCCCCCcceEEEEeCC
Q 015198          254 EVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       254 ~~~~~~~~~~v~~l~~sp  271 (411)
                      .+... ....|.++-|.+
T Consensus        99 ~~~~s-~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFS-VETDISKGIWDR  115 (665)
T ss_pred             ccccc-cccchheeeccc
Confidence            63221 344677777763

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.36  E-value=0.15  Score=48.72  Aligned_cols=195  Identities=10%  Similarity=0.081  Sum_probs=102.3

Q ss_pred             EEEEEeccCCeEEEEe-----cCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--------E-----
Q 015198           89 RIVEMLFRCNILALVG-----AGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--------L-----  150 (411)
Q Consensus        89 ~~~~~~~~~~~~~l~s-----~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------~-----  150 (411)
                      .+..+.++|++..++-     |++.     ..|+++|+++|+.+...-.......+.|.+++..++        .     
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~-----~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEW-----YTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSE-----EEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             EeeeeeECCCCCEEEEEecCCCCce-----EEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCC
Confidence            3335677887765542     2332     689999999997765432222233499999976665        1     


Q ss_pred             -cCeEEEEEcCCceee--EEEeccCCCcceEEEccCCCceEEEEecC--CC-CeEEEEEcCC-----cceEEEeccccce
Q 015198          151 -EHKIYVYSFVDLKLL--HQIETLANLRGLCCLSHHSSTSVLACPGL--QR-GQVRIEHFGL-----NMIKLINAHDSHI  219 (411)
Q Consensus       151 -dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~d-g~i~i~~~~~-----~~~~~~~~~~~~i  219 (411)
                       ...|+.|.+.+...-  ..+.........+.+..+.++++|++...  .+ ..+++-+...     .....+......+
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~  279 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV  279 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence             335888998765432  34444444433566666777777654332  22 3455533333     2344444444444


Q ss_pred             eEEEecCCCCEEEEEcC---CCeEEEEEECCCCce---EEEEeCCCCCcceEEEEeCCCCCEEE-EEeCCC--cEEEEEc
Q 015198          220 ACFTLTLDGLLLATAST---RGTLIRIFNTVDGTR---LQEVRRGVDRAEIYSIALSPNVQWLA-VASDKG--TVHIFSL  290 (411)
Q Consensus       220 ~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg--~I~vwd~  290 (411)
                      ....-+..+.+++....   ++. |...++.+...   ...+..+.....+..+..  .+.+|+ ....++  .|+++++
T Consensus       280 ~~~v~~~~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~  356 (414)
T PF02897_consen  280 EYYVDHHGDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL  356 (414)
T ss_dssp             EEEEEEETTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred             EEEEEccCCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence            33322334444444332   355 76778776652   224444212224555554  344444 444454  5888888


Q ss_pred             c
Q 015198          291 R  291 (411)
Q Consensus       291 ~  291 (411)
                      .
T Consensus       357 ~  357 (414)
T PF02897_consen  357 D  357 (414)
T ss_dssp             T
T ss_pred             C
Confidence            8

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.35  E-value=8.1e-05  Score=70.38  Aligned_cols=197  Identities=13%  Similarity=0.166  Sum_probs=114.9

Q ss_pred             EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEE-EEE--eecCceeEEEEcCC-eEEEE-------EcCeEEEE
Q 015198           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI-GEF--AFRSDVRSVKLSRD-RIVVV-------LEHKIYVY  157 (411)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~-~~~--~~~~~i~~~~~~~~-~~~~~-------~dg~i~iw  157 (411)
                      .+++..++.+..+++.|..+     |.|.+-.++....- .++  .+....++++|++- ...++       .|..+.||
T Consensus        60 kcva~~y~~d~cIlavG~at-----G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   60 KCVASFYGNDRCILAVGSAT-----GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             eeehhhcCCchhhhhhcccc-----CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            34444445555566666665     88888876543322 222  26778899999985 33333       57889999


Q ss_pred             EcCCc--eee--EEEec-cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecC-CCCEE
Q 015198          158 SFVDL--KLL--HQIET-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTL-DGLLL  231 (411)
Q Consensus       158 d~~~~--~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l  231 (411)
                      |+.++  .+.  ..+.. ......  .++|..+.+++. +|.....+.+.+.+.............+..+.+.| .+.++
T Consensus       135 di~s~ltvPke~~~fs~~~l~gqn--s~cwlrd~klvl-aGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQN--SVCWLRDTKLVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             ecccccCCCccccccccccccCcc--ccccccCcchhh-cccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCce
Confidence            99765  111  11211 111112  334444444544 57777788886665444333333344566677888 77788


Q ss_pred             EEEcCCCeEEEEEE-CCCCc-eEEEEeCCC--CCcceEEEEeCCCCC-EEEEEeC-CCcEEEEEcccccc
Q 015198          232 ATASTRGTLIRIFN-TVDGT-RLQEVRRGV--DRAEIYSIALSPNVQ-WLAVASD-KGTVHIFSLRVRVV  295 (411)
Q Consensus       232 ~s~s~dg~~I~vwd-~~~~~-~~~~~~~~~--~~~~v~~l~~spdg~-~l~s~s~-dg~I~vwd~~~~~~  295 (411)
                      ++-. ||. |.+|| ...-+ ++..+....  ....+..++|+|... .|++... .++|+++++..-..
T Consensus       212 cs~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t  279 (783)
T KOG1008|consen  212 CSNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGT  279 (783)
T ss_pred             eccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCC
Confidence            7766 888 99999 33322 222222110  122588999999543 4455554 56899999976543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.32  E-value=0.037  Score=41.02  Aligned_cols=65  Identities=23%  Similarity=0.286  Sum_probs=48.7

Q ss_pred             eeEEEec---CCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198          219 IACFTLT---LDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       219 i~~l~~s---p~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                      |+++++.   -+| +.|++|+.|.. ||+|+  ..+.+.++..   ...|..++-... ..++.+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~--~~e~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFE-IRVFK--GDEIVAEITE---TDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcE-EEEEe--CCcEEEEEec---ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            4555544   344 47999999999 99997  4577777774   457888887766 56888889999988865

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.31  E-value=0.096  Score=45.63  Aligned_cols=196  Identities=10%  Similarity=0.099  Sum_probs=101.4

Q ss_pred             cCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee--cCceeEEEEcCCeEEEE---EcCeEEE
Q 015198           83 LKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF--RSDVRSVKLSRDRIVVV---LEHKIYV  156 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~---~dg~i~i  156 (411)
                      +.+-...+..+.|.++ +.+++.....     +.|...+. +|+.++.+..  -+....|++..++.+++   .++.+.+
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~-----~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEP-----GEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTT-----TEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCC-----CEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence            4344445788889885 5555655555     89999995 6888888873  46788999999998888   3788999


Q ss_pred             EEcCCc------eeeEEEe--cc-CCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC----cceEEE--------ecc
Q 015198          157 YSFVDL------KLLHQIE--TL-ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL----NMIKLI--------NAH  215 (411)
Q Consensus       157 wd~~~~------~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~--------~~~  215 (411)
                      +++...      .....+.  .. ......-.+++++.+..|+++ ....-..|+....    ..+...        ...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccce
Confidence            988321      1122222  11 122233445555443333332 2333344433322    111111        112


Q ss_pred             ccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCC--C-----CcceEEEEeCCCCCEEEEEeCCCcEEE
Q 015198          216 DSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGV--D-----RAEIYSIALSPNVQWLAVASDKGTVHI  287 (411)
Q Consensus       216 ~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~--~-----~~~v~~l~~spdg~~l~s~s~dg~I~v  287 (411)
                      -..+.+++++|.. .+++.+..... |..+| .+|+.+..+.-..  |     -...-.|+|.++|++. ..++-+..++
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~  246 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYR  246 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEE
Confidence            3457889999865 45666666666 99999 6888766554321  1     1246789999999755 4556666666


Q ss_pred             E
Q 015198          288 F  288 (411)
Q Consensus       288 w  288 (411)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            5

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.31  E-value=0.2  Score=49.19  Aligned_cols=187  Identities=14%  Similarity=0.098  Sum_probs=105.3

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEE----------EEeccCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIV----------EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS  124 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~  124 (411)
                      +..|++++ ++.|.-.|..+++.+.+...... ..+.          .+... ++.++++ ..+     +.|.-.|.++|
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~-~~~v~v~-t~d-----g~l~ALDa~TG  140 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALY-DGKVFFG-TLD-----ARLVALDAKTG  140 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEE-CCEEEEE-cCC-----CEEEEEECCCC
Confidence            34555555 88888889888887777654211 1111          01122 2333443 333     89999999999


Q ss_pred             cEEEEEeecC-----ceeE-EEEcCCeEEEE-E-------cCeEEEEEcCCceeeEEEeccCCCc---------------
Q 015198          125 RCIGEFAFRS-----DVRS-VKLSRDRIVVV-L-------EHKIYVYSFVDLKLLHQIETLANLR---------------  175 (411)
Q Consensus       125 ~~~~~~~~~~-----~i~~-~~~~~~~~~~~-~-------dg~i~iwd~~~~~~~~~~~~~~~~~---------------  175 (411)
                      +.+.......     .+.+ ..+. ++.+++ .       +|.|+.+|.++|+.+..+..-....               
T Consensus       141 k~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~  219 (527)
T TIGR03075       141 KVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG  219 (527)
T ss_pred             CEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence            9988765211     1211 1122 444444 1       6899999999999887764321110               


Q ss_pred             ---------------ceEEEccCCCceEEEEecCC----------------CCeEEEEEcCCcceEEEeccccce-----
Q 015198          176 ---------------GLCCLSHHSSTSVLACPGLQ----------------RGQVRIEHFGLNMIKLINAHDSHI-----  219 (411)
Q Consensus       176 ---------------~~~~~~~~~~~~~l~~~g~~----------------dg~i~i~~~~~~~~~~~~~~~~~i-----  219 (411)
                                     .-..++.+++..++....+.                +..|.|+..+++..-.++.....+     
T Consensus       220 ~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~  299 (527)
T TIGR03075       220 AKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG  299 (527)
T ss_pred             cCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC
Confidence                           00122445444444332211                123444555666655554322211     


Q ss_pred             ----eEEEecCCCC---EEEEEcCCCeEEEEEECCCCceE
Q 015198          220 ----ACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRL  252 (411)
Q Consensus       220 ----~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~  252 (411)
                          .-+.+..+|+   .++.+..+|. +++.|..+|+.+
T Consensus       300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i  338 (527)
T TIGR03075       300 VNEMILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL  338 (527)
T ss_pred             CCCcEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence                1223334676   7889999999 999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.30  E-value=0.09  Score=44.98  Aligned_cols=32  Identities=13%  Similarity=0.242  Sum_probs=25.7

Q ss_pred             EcCCCCEEEEEe-CCcEEEEecCCCcceEEeec
Q 015198           52 WNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL   83 (411)
Q Consensus        52 ~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~   83 (411)
                      ..+++.++.+|+ |++....|..+...+++.+.
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            456788999999 99999999888777777554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.30  E-value=0.00072  Score=66.17  Aligned_cols=110  Identities=19%  Similarity=0.175  Sum_probs=81.2

Q ss_pred             EccCCCceEEEEec---CCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198          180 LSHHSSTSVLACPG---LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       180 ~~~~~~~~~l~~~g---~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (411)
                      .+|+|...+++++.   ...|.|.|+...+++-.... ..-.+++++|+|..-.|+.|-.-|. +.+|...+.+. .++.
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~-htv~   97 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTET-HTVV   97 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEecCCCCCcccc-cceehhhhccChHHHHHhhccccce-eEEEecCCcee-eeec
Confidence            34445555665422   35688989877776543322 1233567999999989999999999 99998765544 3443


Q ss_pred             CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      .. |+.+|..+.||++|..|+++..-|.|.+|.+..-
T Consensus        98 ~t-h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   98 ET-HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             cC-CCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence            33 8899999999999999999999999999998743

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.29  E-value=0.12  Score=46.20  Aligned_cols=221  Identities=16%  Similarity=0.161  Sum_probs=114.3

Q ss_pred             CCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEE-----
Q 015198           54 QDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG-----  128 (411)
Q Consensus        54 ~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~-----  128 (411)
                      ..++.|++|+++.+.+++........ ..  .....+..+...++...++.-.+      +.+.++++..-....     
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~-~i--~~~~~I~ql~vl~~~~~llvLsd------~~l~~~~L~~l~~~~~~~~~   75 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKPT-RI--LKLSSITQLSVLPELNLLLVLSD------GQLYVYDLDSLEPVSTSAPL   75 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCccce-eE--eecceEEEEEEecccCEEEEEcC------CccEEEEchhhccccccccc
Confidence            45788999994459999983212211 11  12223666666665443333322      899999976543333     


Q ss_pred             ----------EEeecCceeEEE---EcCCeEEEE--EcCeEEEEEcCCc-----eeeEEEeccCCCcceEEEccCCCceE
Q 015198          129 ----------EFAFRSDVRSVK---LSRDRIVVV--LEHKIYVYSFVDL-----KLLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       129 ----------~~~~~~~i~~~~---~~~~~~~~~--~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                                .+.....+...+   -......++  ....|.+|.....     +..+++.....   ...+.+.++  .
T Consensus        76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~---~~~i~~~~~--~  150 (275)
T PF00780_consen   76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDP---PSSIAFLGN--K  150 (275)
T ss_pred             cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCC---cEEEEEeCC--E
Confidence                      122233444444   122333333  6778888887542     45566655543   334444433  3


Q ss_pred             EEEecCCCCeEEEEEcCCcceEEEecc------------ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEE--E
Q 015198          189 LACPGLQRGQVRIEHFGLNMIKLINAH------------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ--E  254 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~~~~~~~~~~------------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~--~  254 (411)
                      +++ |..++...++..++.....+...            ..++..+.. +++.+|++-.  .. -.+.|. .|+..+  .
T Consensus       151 i~v-~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~--~~-g~fv~~-~G~~~r~~~  224 (275)
T PF00780_consen  151 ICV-GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD--NI-GVFVNK-NGEPSRKST  224 (275)
T ss_pred             EEE-EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEec--ce-EEEEcC-CCCcCcccE
Confidence            443 43555544444434332222111            123444444 3456666532  22 334443 554433  4


Q ss_pred             EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 015198          255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS  300 (411)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~  300 (411)
                      +..   ...+.++++.  ..+|++...++ |.||++.+++..+...
T Consensus       225 i~W---~~~p~~~~~~--~pyli~~~~~~-iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  225 IQW---SSAPQSVAYS--SPYLIAFSSNS-IEVRSLETGELVQTIP  264 (275)
T ss_pred             EEc---CCchhEEEEE--CCEEEEECCCE-EEEEECcCCcEEEEEE
Confidence            443   1245566663  35777766655 9999999998765433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.28  E-value=0.033  Score=41.29  Aligned_cols=93  Identities=13%  Similarity=0.153  Sum_probs=66.9

Q ss_pred             EEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcce
Q 015198          100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGL  177 (411)
Q Consensus       100 ~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~  177 (411)
                      .-|+.|++|     ..|++|+  ..+.+.++.....|.++.-...+++..  .+|+|-+|+-  .+.+..++....+...
T Consensus        16 ~eLlvGs~D-----~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~   86 (111)
T PF14783_consen   16 NELLVGSDD-----FEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSM   86 (111)
T ss_pred             ceEEEecCC-----cEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEE
Confidence            456666666     9999998  557888888889999999888777666  7999999984  3555566665555566


Q ss_pred             EEEccCCCceEEEEecCCCCeEEE
Q 015198          178 CCLSHHSSTSVLACPGLQRGQVRI  201 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~i~i  201 (411)
                      ..+..+.++..-+++|-.+|.|-+
T Consensus        87 ~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   87 AFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EEEcCCCCCceEEEEEecCCeEEe
Confidence            666666666544445767777653

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.24  E-value=0.031  Score=55.27  Aligned_cols=105  Identities=13%  Similarity=0.105  Sum_probs=59.3

Q ss_pred             EEccCCCceEEEEecC-----CCC--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEE-------
Q 015198          179 CLSHHSSTSVLACPGL-----QRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF-------  244 (411)
Q Consensus       179 ~~~~~~~~~~l~~~g~-----~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw-------  244 (411)
                      ....++++..+++...     .|+  .|.+....+.......+  .......|+|+|..|++.......+++.       
T Consensus       354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq  431 (591)
T PRK13616        354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ  431 (591)
T ss_pred             cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccCCCce
Confidence            3344556666666541     233  34443333433222232  2378899999998887765332213333       


Q ss_pred             ----ECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          245 ----NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       245 ----d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                          ++..++...   .  ....|..+.|||||..|+... +|.|+|=-+.
T Consensus       432 l~~~~vd~ge~~~---~--~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv  476 (591)
T PRK13616        432 LARTPVDASAVAS---R--VPGPISELQLSRDGVRAAMII-GGKVYLAVVE  476 (591)
T ss_pred             EEEEeccCchhhh---c--cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence                333333221   1  245799999999999988766 4777774433

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.0021  Score=64.81  Aligned_cols=104  Identities=13%  Similarity=0.189  Sum_probs=71.8

Q ss_pred             eEEEEecCCCCeEEEEEcCCcce--EEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC-cc
Q 015198          187 SVLACPGLQRGQVRIEHFGLNMI--KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-AE  263 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~~~~--~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~~  263 (411)
                      ..+++ |+..|.+...+.++...  ..-..-.++|++++|+.+|++++.|-.+|. |.+||+..++.++.+..+.++ ..
T Consensus       100 ~~ivi-~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen  100 VPIVI-GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeEEE-EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccce
Confidence            34554 55677777754444322  222334689999999999999999999999 999999999988887763222 13


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      |..+.+..++..++++...|.  +|++.-.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~lv~nk  206 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKLVFNK  206 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEEEech
Confidence            334445556667777777774  77775544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.23  Score=46.70  Aligned_cols=216  Identities=13%  Similarity=0.067  Sum_probs=132.2

Q ss_pred             eEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe--EEEEecC-CCCCCCCCeEEEEEC
Q 015198           47 LISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI--LALVGAG-DNSQYPPTKVIIWDD  121 (411)
Q Consensus        47 V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~~-~d~~~~d~~i~vwd~  121 (411)
                      -..++.++.+..+.+..  ++.|.+.|..+......... +.  ....+.+++++  .+++-.. .+     +.+.+.|.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~--~P~~~~~~~~~~~vYV~n~~~~~-----~~vsvid~  147 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GL--GPVGLAVDPDGKYVYVANAGNGN-----NTVSVIDA  147 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-cc--CCceEEECCCCCEEEEEecccCC-----ceEEEEeC
Confidence            45778888888666555  79999999776444333322 22  44455666655  3333332 24     89999999


Q ss_pred             CCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeE-E----EeccCCCcceEEEccCCCceEEEEe
Q 015198          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH-Q----IETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       122 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      .+++.+........-..++++|++..+.    .++.|.+.|.......+ .    +..... .....+.++....+++..
T Consensus       148 ~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         148 ATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             CCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEec
Confidence            9999888865332228999999998665    47999999976655543 1    222222 134555555554444443


Q ss_pred             cCCCCeEEEEEcCCcceEEE--eccccceeEEEecCCCCEEEEEcCC-CeEEEEEECCCCceEEEEeCCCCC-cceEEEE
Q 015198          193 GLQRGQVRIEHFGLNMIKLI--NAHDSHIACFTLTLDGLLLATASTR-GTLIRIFNTVDGTRLQEVRRGVDR-AEIYSIA  268 (411)
Q Consensus       193 g~~dg~i~i~~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~d-g~~I~vwd~~~~~~~~~~~~~~~~-~~v~~l~  268 (411)
                      ++.++.+..-+.....+...  .........+.++|+|+.+.+.... +. +.+-|..+......+..+... ..+..++
T Consensus       227 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~~~~~~~~~~  305 (381)
T COG3391         227 GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNEALGEPVSIA  305 (381)
T ss_pred             cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeecccccccccceecc
Confidence            33335666644444333332  1111145568899999988887555 66 999999888877766543221 2355666


Q ss_pred             eCCC
Q 015198          269 LSPN  272 (411)
Q Consensus       269 ~spd  272 (411)
                      +.+.
T Consensus       306 ~~~~  309 (381)
T COG3391         306 ISPL  309 (381)
T ss_pred             ceee
Confidence            6554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.03  E-value=0.19  Score=43.74  Aligned_cols=181  Identities=13%  Similarity=0.087  Sum_probs=107.0

Q ss_pred             CeEEEEEcCCCCEEEEEe-C--CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           46 ELISVSWNQDYGCFAAGT-S--CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~-d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      -.-.+.|..+|.++-+.+ -  ..|+.+|+++++......+ ....---.+....+..+..+--+      +...+||..
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-~~~~FgEGit~~~d~l~qLTWk~------~~~f~yd~~  118 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-PPRYFGEGITILGDKLYQLTWKE------GTGFVYDPN  118 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--EEEEEEETTEEEEEESSS------SEEEEEETT
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-CccccceeEEEECCEEEEEEecC------CeEEEEccc
Confidence            345678877777666555 4  4689999998776666666 33444444555677777787655      999999999


Q ss_pred             CCcEEEEEeecCceeEEEEcCCeEEEEEc--CeEEEEEcCCceeeEEEeccCCCcc---eEEEccCCCceEEEEecCCCC
Q 015198          123 QSRCIGEFAFRSDVRSVKLSRDRIVVVLE--HKIYVYSFVDLKLLHQIETLANLRG---LCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       123 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~g~~dg  197 (411)
                      +-+.+.++...+.=..++...+ .++..|  ..++++|..+.+..+.+....+...   .-.+.+- +|.+.|-.=..|.
T Consensus       119 tl~~~~~~~y~~EGWGLt~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~  196 (264)
T PF05096_consen  119 TLKKIGTFPYPGEGWGLTSDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR  196 (264)
T ss_dssp             TTEEEEEEE-SSS--EEEECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred             cceEEEEEecCCcceEEEcCCC-EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence            9999999998777778884433 344454  5688889888877777654332111   1122222 3444444444555


Q ss_pred             eEEEEEcCCcceEEEec---------------cccceeEEEecCCCCEEEEEc
Q 015198          198 QVRIEHFGLNMIKLINA---------------HDSHIACFTLTLDGLLLATAS  235 (411)
Q Consensus       198 ~i~i~~~~~~~~~~~~~---------------~~~~i~~l~~sp~g~~l~s~s  235 (411)
                      .++|+..+++.+..+..               ...-.+.||++|....|...+
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            56666666655544421               134578899988776555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.87  E-value=0.27  Score=42.88  Aligned_cols=185  Identities=12%  Similarity=0.101  Sum_probs=110.2

Q ss_pred             CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCce--eEEEEcCCeEEEE--EcCeEEEEEcC
Q 015198           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDV--RSVKLSRDRIVVV--LEHKIYVYSFV  160 (411)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~--~dg~i~iwd~~  160 (411)
                      ........+.|..++.++-+.+..   ....|+.+|+.+++.......+...  ..+....+..+..  .++...+||..
T Consensus        42 d~~aFTQGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~  118 (264)
T PF05096_consen   42 DPTAFTQGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPN  118 (264)
T ss_dssp             -TT-EEEEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             CCcccCccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccc
Confidence            444445556675666666666553   2358999999999988877744333  3466667766666  79999999999


Q ss_pred             CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEEEecc--c---cceeEEEecCCCCEEEEE
Q 015198          161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAH--D---SHIACFTLTLDGLLLATA  234 (411)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~--~---~~i~~l~~sp~g~~l~s~  234 (411)
                      +.+.+.++.-...   -..+..++  ..|+.+- ....+++.+. +.+....+...  .   ..++.+.+- +|.+.|=.
T Consensus       119 tl~~~~~~~y~~E---GWGLt~dg--~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV  191 (264)
T PF05096_consen  119 TLKKIGTFPYPGE---GWGLTSDG--KRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV  191 (264)
T ss_dssp             TTEEEEEEE-SSS-----EEEECS--SCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE
T ss_pred             cceEEEEEecCCc---ceEEEcCC--CEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe
Confidence            9999988865532   23333443  3344432 2345666443 33444444332  2   235556664 67666666


Q ss_pred             cCCCeEEEEEECCCCceEEEEeCC-------------CCCcceEEEEeCCCCCEEEEEe
Q 015198          235 STRGTLIRIFNTVDGTRLQEVRRG-------------VDRAEIYSIALSPNVQWLAVAS  280 (411)
Q Consensus       235 s~dg~~I~vwd~~~~~~~~~~~~~-------------~~~~~v~~l~~spdg~~l~s~s  280 (411)
                      -.... |...|..+|+.+..+...             ....-.+.|++.|..+.|...+
T Consensus       192 W~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  192 WQTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            66666 888999999988766310             0134678999998776555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.77  E-value=0.02  Score=53.64  Aligned_cols=137  Identities=15%  Similarity=0.308  Sum_probs=89.9

Q ss_pred             cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE----ecCCCCeEEEEEcCCc---ceEEEecc----ccce
Q 015198          151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC----PGLQRGQVRIEHFGLN---MIKLINAH----DSHI  219 (411)
Q Consensus       151 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~dg~i~i~~~~~~---~~~~~~~~----~~~i  219 (411)
                      ...++-.|++.|+.+..+..+.. +..+.+.++.++..|..    .|-.+..|.-|+.+-+   .+...+.|    ....
T Consensus       355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF  433 (644)
T KOG2395|consen  355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF  433 (644)
T ss_pred             cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence            35688889999999999887765 66777777655444321    1334555554554432   22222333    2345


Q ss_pred             eEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          220 ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       220 ~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      .|.+-..+| +|++|+.+|. ||+||- .+....+.-.+ ...+|..+..+.||++|+..+ +..+.+-++.-.
T Consensus       434 sc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~k  502 (644)
T KOG2395|consen  434 SCFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGKWILATC-KTYLLLIDTLIK  502 (644)
T ss_pred             ceeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc-cCCceeeEEeeccCcEEEEec-ccEEEEEEEecc
Confidence            666666666 7999999999 999996 66544443322 566999999999999987554 556777776543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.75  E-value=0.0072  Score=37.38  Aligned_cols=34  Identities=15%  Similarity=0.371  Sum_probs=30.0

Q ss_pred             CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      ....|..++|+|...+||.++.+|.|.++.+ +++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            3457999999999999999999999999999 444

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.75  E-value=0.025  Score=53.01  Aligned_cols=138  Identities=17%  Similarity=0.276  Sum_probs=94.4

Q ss_pred             EEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe---------EEEE-EcCeEEEEEcCCc-e-eeEE
Q 015198          100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR---------IVVV-LEHKIYVYSFVDL-K-LLHQ  167 (411)
Q Consensus       100 ~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~-~dg~i~iwd~~~~-~-~~~~  167 (411)
                      .++.++...     ..|+-.|++.|+.+.+......|.-+.+.|+.         .++. .|+.|.-||.+-. + .+..
T Consensus       347 lil~~~~~~-----~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  347 LILMDGGEQ-----DKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             eEeeCCCCc-----CcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            445555544     78999999999999999976668777787764         3333 7889999998632 2 2222


Q ss_pred             EeccC--CCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198          168 IETLA--NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF  244 (411)
Q Consensus       168 ~~~~~--~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw  244 (411)
                      -+.+.  ......|++...+|.+ ++ |+.+|.|++++..+. ....+.+-..+|..|..+.+|++|+..+ +.. +.+-
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG~I-vv-gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty-LlLi  497 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESGYI-VV-GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTY-LLLI  497 (644)
T ss_pred             eeccccccccccceeeecCCceE-EE-eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccE-EEEE
Confidence            22221  1224556666666644 43 779999999877554 3445678899999999999999877655 344 6566


Q ss_pred             EC
Q 015198          245 NT  246 (411)
Q Consensus       245 d~  246 (411)
                      ++
T Consensus       498 ~t  499 (644)
T KOG2395|consen  498 DT  499 (644)
T ss_pred             EE
Confidence            54

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.74  E-value=0.16  Score=50.46  Aligned_cols=188  Identities=11%  Similarity=0.047  Sum_probs=96.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-------CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCC-C------
Q 015198           44 EIELISVSWNQDYGCFAAGT-------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-S------  109 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~------  109 (411)
                      ...+.+.+++|||+.+|...       |..-.||-.......... . .+. ......|++++..+....+. .      
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-t-~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-L-EGH-SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-e-cCC-CCCCceECCCCCceEEEecCcceEEEec
Confidence            34688999999999887543       334455544332222222 1 222 36667788875544333211 0      


Q ss_pred             CCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEE---EEcCCcee-e---EEEeccCCCcceEEE
Q 015198          110 QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYV---YSFVDLKL-L---HQIETLANLRGLCCL  180 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~i---wd~~~~~~-~---~~~~~~~~~~~~~~~  180 (411)
                      ....+.+.+.++..++...  .....|..+.|+|||..++  .++.|++   -....|+. +   ..+..... .....+
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~-~~~~~l  502 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLG-DTAVSL  502 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccC-Cccccc
Confidence            0011445555555544433  4466899999999999888  6888887   44344431 1   11211111 123556


Q ss_pred             ccCCCceEEEEecCCCCeEEEEEcCCcceEEEec--cccceeEEEecCCCCEEEEEcCCCe
Q 015198          181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGT  239 (411)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~  239 (411)
                      .|.+++.+++.....+..+..-..++.....+..  ...++..|+-+++  .|+....++.
T Consensus       503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        503 DWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             eEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            6777766554332222233333344433332222  2455666665552  3444455553

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.61  E-value=0.58  Score=43.18  Aligned_cols=242  Identities=11%  Similarity=0.069  Sum_probs=106.8

Q ss_pred             EEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCC---CC--------------C
Q 015198           49 SVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD---NS--------------Q  110 (411)
Q Consensus        49 ~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~--------------~  110 (411)
                      ...++|+.+.++... ...++-.|+++.+......+...-.....+..+.+...++....   +-              +
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a  164 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA  164 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence            456678877776554 66788888888766555555344333333333334433332211   10              0


Q ss_pred             CCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---E----cC-eEEEEEcC-CceeeEEEeccCCCcceEEEc
Q 015198          111 YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---L----EH-KIYVYSFV-DLKLLHQIETLANLRGLCCLS  181 (411)
Q Consensus       111 ~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~----dg-~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~  181 (411)
                      -....|.-.|+.+|+....+.....+..+.|+|....++   .    +. .-+||-++ .+...+.+..+.....+-.=-
T Consensus       165 ~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEf  244 (386)
T PF14583_consen  165 RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEF  244 (386)
T ss_dssp             ---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEE
T ss_pred             CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccc
Confidence            123578888999998877777888889999999755444   1    22 12555542 333333333332211222222


Q ss_pred             cCCCceEEEEecC----CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCC---------------eEEE
Q 015198          182 HHSSTSVLACPGL----QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG---------------TLIR  242 (411)
Q Consensus       182 ~~~~~~~l~~~g~----~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---------------~~I~  242 (411)
                      |.++|..|.+.+.    .+..|.-.+........+. ...+..-+-.++||++++-=+.|.               ..|+
T Consensus       245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~-~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~  323 (386)
T PF14583_consen  245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM-EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY  323 (386)
T ss_dssp             E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE-EE-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred             ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE-eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence            4455555554322    1222222333322222221 111233455578998776433321               1267


Q ss_pred             EEECCCCceEEEEeCCC--------C-CcceEEEEeCCCCCEEE-EEeCCCcEEEEEccc
Q 015198          243 IFNTVDGTRLQEVRRGV--------D-RAEIYSIALSPNVQWLA-VASDKGTVHIFSLRV  292 (411)
Q Consensus       243 vwd~~~~~~~~~~~~~~--------~-~~~v~~l~~spdg~~l~-s~s~dg~I~vwd~~~  292 (411)
                      ++++..++... +..+.        + ...=-...|+|||++++ .+...|...||=++-
T Consensus       324 ~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i  382 (386)
T PF14583_consen  324 LFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI  382 (386)
T ss_dssp             EEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred             EeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence            78887765432 21110        0 01124678999999866 555677777775543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.54  E-value=0.58  Score=42.36  Aligned_cols=198  Identities=12%  Similarity=0.088  Sum_probs=106.6

Q ss_pred             EEEEEcCCCCEEEEEe---CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC-C
Q 015198           48 ISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH-Q  123 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~-~  123 (411)
                      ..++++.||+++++..   ...|.|-|++..+....... .+   +..+...++..+..-|++      |.+.-..+. .
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG---C~~iyP~~~~~F~~lC~D------Gsl~~v~Ld~~  167 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG---CWLIYPSGNRGFSMLCGD------GSLLTVTLDAD  167 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS---EEEEEEEETTEEEEEETT------SCEEEEEETST
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC---EEEEEecCCCceEEEecC------CceEEEEECCC
Confidence            4568899999998877   77899999987555444433 22   222223333334444443      888888776 5


Q ss_pred             CcEEEEEe--e---cCce-eEEEEc-CCeEEEE--EcCeEEEEEcCCce--eeEEEecc----------CCCcceEEEcc
Q 015198          124 SRCIGEFA--F---RSDV-RSVKLS-RDRIVVV--LEHKIYVYSFVDLK--LLHQIETL----------ANLRGLCCLSH  182 (411)
Q Consensus       124 ~~~~~~~~--~---~~~i-~~~~~~-~~~~~~~--~dg~i~iwd~~~~~--~~~~~~~~----------~~~~~~~~~~~  182 (411)
                      |+......  +   ..++ ..-.+. ..+.++.  .+|.|+-.|+....  ....+...          ......++++.
T Consensus       168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~  247 (342)
T PF06433_consen  168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA  247 (342)
T ss_dssp             SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred             CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence            66653332  1   1222 222333 3344544  78999999886543  22233211          11123445544


Q ss_pred             CCCceEEEEec-----CCCCeEEEEEcCC---cceEEEeccccceeEEEecCCCC-EEEE-EcCCCeEEEEEECCCCceE
Q 015198          183 HSSTSVLACPG-----LQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLDGL-LLAT-ASTRGTLIRIFNTVDGTRL  252 (411)
Q Consensus       183 ~~~~~~l~~~g-----~~dg~i~i~~~~~---~~~~~~~~~~~~i~~l~~sp~g~-~l~s-~s~dg~~I~vwd~~~~~~~  252 (411)
                      ..+..+++.-.     -.++.-.||..+.   +.+..+.. ..++.+|+++.+.+ +|++ ...++. +.+||..+|+.+
T Consensus       248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~~  325 (342)
T PF06433_consen  248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKLV  325 (342)
T ss_dssp             TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--EE
T ss_pred             ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcEE
Confidence            33333332211     1334444554443   34444442 35688999998876 5654 456788 999999999999


Q ss_pred             EEEeC
Q 015198          253 QEVRR  257 (411)
Q Consensus       253 ~~~~~  257 (411)
                      .++..
T Consensus       326 ~~~~~  330 (342)
T PF06433_consen  326 RSIEQ  330 (342)
T ss_dssp             EEE--
T ss_pred             eehhc
Confidence            88875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.54  E-value=0.2  Score=43.63  Aligned_cols=161  Identities=10%  Similarity=0.030  Sum_probs=102.5

Q ss_pred             CCCcEEEEEeecCceeEEEEcCCeEEEE-----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC--
Q 015198          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL--  194 (411)
Q Consensus       122 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--  194 (411)
                      +.|+++........-..|.++|.....+     -.....++|..+.+....+....+.-..-.=.+++++.+|.++-.  
T Consensus        56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf  135 (366)
T COG3490          56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF  135 (366)
T ss_pred             cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence            5678888777777778888988654433     245578899988777766654433222222245667778876531  


Q ss_pred             --CCCeEEEEEcCC--cceEEEeccccceeEEEecCCCCEEEEEcCC-------Ce----------EEEEEECCCCceEE
Q 015198          195 --QRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTR-------GT----------LIRIFNTVDGTRLQ  253 (411)
Q Consensus       195 --~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-------g~----------~I~vwd~~~~~~~~  253 (411)
                        .-|.|-|++.+.  ..+-.+..|.-.-..+.+.+||+.|+.+...       |.          .+.+.|..+|+++.
T Consensus       136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie  215 (366)
T COG3490         136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE  215 (366)
T ss_pred             CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence              236777877654  4456677888778889999999998876531       00          13444555665543


Q ss_pred             EEeCC--CCCcceEEEEeCCCCCEEEEEeCC
Q 015198          254 EVRRG--VDRAEIYSIALSPNVQWLAVASDK  282 (411)
Q Consensus       254 ~~~~~--~~~~~v~~l~~spdg~~l~s~s~d  282 (411)
                      +....  .+.-.|..++..+||..++.+-..
T Consensus       216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~  246 (366)
T COG3490         216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYR  246 (366)
T ss_pred             hccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence            33221  244578888888888877665443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.45  E-value=0.00092  Score=63.51  Aligned_cols=198  Identities=12%  Similarity=0.098  Sum_probs=116.0

Q ss_pred             CCCCeEEEEEcCCC--CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEE
Q 015198           43 DEIELISVSWNQDY--GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        43 h~~~V~~l~~s~~g--~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ....+.|+++.-+.  ..+++|. +|.|.+-........-.....++...+.+++|.+ |...|+.| -|....+..+.|
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAag-ldkhrnds~~~I  133 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAG-LDKHRNDSSLKI  133 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhh-hhhhcccCCccc
Confidence            34567788776553  4677888 9999988775322211111235556677777776 34455544 333335689999


Q ss_pred             EECCCC--cEEEEEe----ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEcc-CCCce
Q 015198          119 WDDHQS--RCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSH-HSSTS  187 (411)
Q Consensus       119 wd~~~~--~~~~~~~----~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~  187 (411)
                      ||+.++  .+.....    ......+++|..+.+++.   ....++++|++.. .....+..  ..+....+.| .+  .
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k~vqG~tVdp~~~--n  209 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--KYVQGITVDPFSP--N  209 (783)
T ss_pred             eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--hhcccceecCCCC--C
Confidence            998877  2222222    234556788888887777   4568999998732 22222222  1112233444 33  3


Q ss_pred             EEEEecCCCCeEEEEEcCC---cceEEEecc----ccceeEEEecCCCC-EEEEEcCCCeEEEEEECC
Q 015198          188 VLACPGLQRGQVRIEHFGL---NMIKLINAH----DSHIACFTLTLDGL-LLATASTRGTLIRIFNTV  247 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~---~~~~~~~~~----~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~  247 (411)
                      +++  ...||.|.+|+...   .++..+...    ...+..++|.|... ++++...|...|+++|+.
T Consensus       210 Y~c--s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  210 YFC--SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cee--ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            453  34699999988322   222222222    22488999998653 566777765559999975

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.33  E-value=0.67  Score=40.73  Aligned_cols=167  Identities=9%  Similarity=-0.009  Sum_probs=89.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCC-CcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ..+-...|.++.|+|+.+.|.+..+.--.|-.+.+ ++.+....+ .+-...-.+.+..++.+.++-..+     +.+.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL-~g~~DpE~Ieyig~n~fvi~dER~-----~~l~~  154 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL-TGFSDPETIEYIGGNQFVIVDERD-----RALYL  154 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc-cccCChhHeEEecCCEEEEEehhc-----ceEEE
Confidence            34555669999999998888877744334444443 343334444 222333345677788888887776     88888


Q ss_pred             EECCCCcEEEE-----Ee-----e-cCceeEEEEcCCeEEEE---EcCeEEEEEcCCce-e--eEEEeccCCC--c---c
Q 015198          119 WDDHQSRCIGE-----FA-----F-RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-L--LHQIETLANL--R---G  176 (411)
Q Consensus       119 wd~~~~~~~~~-----~~-----~-~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~-~--~~~~~~~~~~--~---~  176 (411)
                      +.+.....+..     +.     + +.....++|+|....+.   ...-+.||...... .  ++....+...  .   .
T Consensus       155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D  234 (316)
T COG3204         155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD  234 (316)
T ss_pred             EEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence            87665532221     21     2 45677899998655444   34445555543221 1  1111111111  1   1


Q ss_pred             eEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEE
Q 015198          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI  212 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~  212 (411)
                      +..+.+++....|.+-+.+++.+.--+..+..+..+
T Consensus       235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~l  270 (316)
T COG3204         235 VSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELL  270 (316)
T ss_pred             cccceecCCCCcEEEEecCCceEEEEecCCCeeeeE
Confidence            233444443333333354555555566666655444

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.19  E-value=0.019  Score=35.50  Aligned_cols=35  Identities=17%  Similarity=0.379  Sum_probs=30.4

Q ss_pred             ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE
Q 015198          216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL  252 (411)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~  252 (411)
                      ...|..++|+|...+||.++.+|. |.+|.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcCc
Confidence            456899999999999999999999 999998 55543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.10  E-value=0.02  Score=47.93  Aligned_cols=101  Identities=16%  Similarity=0.150  Sum_probs=65.6

Q ss_pred             ecCCCCeEEEEEcCC--cceEEEeccccceeE-EEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC-cceEEE
Q 015198          192 PGLQRGQVRIEHFGL--NMIKLINAHDSHIAC-FTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-AEIYSI  267 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~-l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~~v~~l  267 (411)
                      .|..+|.|++|..+.  ........-...|.+ |.-..++.+..++..+|. ||.|++.-++.+.....  |. .++..+
T Consensus        75 vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~--h~~~~~e~~  151 (238)
T KOG2444|consen   75 VGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQ--HNFESGEEL  151 (238)
T ss_pred             eecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeeecc--ccCCCccee
Confidence            377899999976652  221111112222222 222345568889999999 99999988887766554  44 455556


Q ss_pred             EeCCCCCEEEEE--eCCCcEEEEEcccccc
Q 015198          268 ALSPNVQWLAVA--SDKGTVHIFSLRVRVV  295 (411)
Q Consensus       268 ~~spdg~~l~s~--s~dg~I~vwd~~~~~~  295 (411)
                      ..+..+++|+.+  +.|..++.|++..-..
T Consensus       152 ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d  181 (238)
T KOG2444|consen  152 IVVGSDEFLKIADTSHDRVLKKWNVEKIKD  181 (238)
T ss_pred             EEecCCceEEeeccccchhhhhcchhhhhc
Confidence            666666777777  7788888888876543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.10  E-value=2  Score=44.02  Aligned_cols=244  Identities=14%  Similarity=0.101  Sum_probs=120.9

Q ss_pred             CCCCeEEEEEcCCC------CEEEEEe-CCcEEEEecCCCcceEE-eec--CCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           43 DEIELISVSWNQDY------GCFAAGT-SCGFRIYNCEPFKETFR-RDL--KSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        43 h~~~V~~l~~s~~g------~~la~g~-dg~i~iw~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      -+..|.|+.++|-|      +++++|. +..+.+.-..+...... ..+  ..-+..++-..+-.+..+|..+..|    
T Consensus       529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgd----  604 (1096)
T KOG1897|consen  529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGD----  604 (1096)
T ss_pred             ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCC----
Confidence            45689999999752      2788888 66555444333222222 212  1123334444555555566555555    


Q ss_pred             CCeEEEEE--CCCCcEEEEEe---ecCceeEEEEcCCe--EEEE-EcCeEEEEEcCCceeeEE-EeccCCCcceEEEccC
Q 015198          113 PTKVIIWD--DHQSRCIGEFA---FRSDVRSVKLSRDR--IVVV-LEHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHH  183 (411)
Q Consensus       113 d~~i~vwd--~~~~~~~~~~~---~~~~i~~~~~~~~~--~~~~-~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~  183 (411)
                       |.+.-+.  ..+++.-..-+   ...++.--.|+..+  ..++ .|.-..+|.-+ +++... +... ....++.+..+
T Consensus       605 -G~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~k-ev~~~c~f~s~  681 (1096)
T KOG1897|consen  605 -GALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLK-EVNHMCPFNSD  681 (1096)
T ss_pred             -ceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchH-Hhhhhcccccc
Confidence             8776554  44443322211   23334333343322  2222 56655566532 333221 1111 11123444433


Q ss_pred             CCceEEEEecCCCCeEEE---EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCC-------------eEEEEEECC
Q 015198          184 SSTSVLACPGLQRGQVRI---EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-------------TLIRIFNTV  247 (411)
Q Consensus       184 ~~~~~l~~~g~~dg~i~i---~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-------------~~I~vwd~~  247 (411)
                      .-...++++  ..+.+++   +....-.++++.. ......+++.+....+++.+...             ..++++|-+
T Consensus       682 a~~d~l~~~--~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n  758 (1096)
T KOG1897|consen  682 AYPDSLASA--NGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN  758 (1096)
T ss_pred             cCCceEEEe--cCCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC
Confidence            323345443  3455665   3333333444433 33446677776444444433211             027788877


Q ss_pred             CCceEEEEeCCCC--CcceEEEEeCCC-CCEEEEEeC----------CCcEEEEEccccccC
Q 015198          248 DGTRLQEVRRGVD--RAEIYSIALSPN-VQWLAVASD----------KGTVHIFSLRVRVVG  296 (411)
Q Consensus       248 ~~~~~~~~~~~~~--~~~v~~l~~spd-g~~l~s~s~----------dg~I~vwd~~~~~~~  296 (411)
                      +.+.+...+-...  .-.|.++.|..| +.++++|+.          .|.|.||.+...++.
T Consensus       759 Tf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L  820 (1096)
T KOG1897|consen  759 TFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL  820 (1096)
T ss_pred             ceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence            7666544332111  124556668877 677887763          478888888874443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.26  Score=40.90  Aligned_cols=103  Identities=8%  Similarity=0.055  Sum_probs=64.3

Q ss_pred             CCEEEEEe---CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee
Q 015198           56 YGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF  132 (411)
Q Consensus        56 g~~la~g~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~  132 (411)
                      |.++.+.+   ...|++||+.+++......+.....---.+.-..+..+..+-.+      +.-..+|..+-+++..+..
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~t~~~lg~~~y  129 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE------GVAFKYDADTLEELGRFSY  129 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc------ceeEEEChHHhhhhccccc
Confidence            44454444   56799999998888877776321221122333456666666544      8899999999999888887


Q ss_pred             cCceeEEEEcCCeEEEEEcCe--EEEEEcCCceee
Q 015198          133 RSDVRSVKLSRDRIVVVLEHK--IYVYSFVDLKLL  165 (411)
Q Consensus       133 ~~~i~~~~~~~~~~~~~~dg~--i~iwd~~~~~~~  165 (411)
                      ++.=..++...+. ++..||+  ++.-|.++....
T Consensus       130 ~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~  163 (262)
T COG3823         130 EGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAEL  163 (262)
T ss_pred             CCcceeeecCCcc-eEeeCCceEEEecCHHHhhhc
Confidence            7777777665444 3334544  444455444333

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.03  E-value=0.17  Score=47.48  Aligned_cols=80  Identities=16%  Similarity=0.230  Sum_probs=55.8

Q ss_pred             EEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC------CCcceEEEEeC-----CCC---CE
Q 015198          210 KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV------DRAEIYSIALS-----PNV---QW  275 (411)
Q Consensus       210 ~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~------~~~~v~~l~~s-----pdg---~~  275 (411)
                      ..+....++|++++.|.-| ++|.|..+|. +.|.|++....++.-....      ....|+++.|+     .|+   -.
T Consensus        80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             EEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             hheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            3344557899999997555 9999999999 9999998888776633211      23468888887     233   36


Q ss_pred             EEEEeCCCcEEEEEcc
Q 015198          276 LAVASDKGTVHIFSLR  291 (411)
Q Consensus       276 l~s~s~dg~I~vwd~~  291 (411)
                      |++|++.|.+.+|++-
T Consensus       158 L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEETTSEEEEEEEE
T ss_pred             EEEEeCCCCEEEEEEe
Confidence            8899999999999986

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.99  E-value=0.83  Score=38.73  Aligned_cols=103  Identities=11%  Similarity=0.164  Sum_probs=69.8

Q ss_pred             eeEEEecCCCCEEEE-EcCCCeEEEEEE--CCCCc-----eEEEEeCCC--CCcceEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198          219 IACFTLTLDGLLLAT-ASTRGTLIRIFN--TVDGT-----RLQEVRRGV--DRAEIYSIALSPNVQWLAVASDKGTVHIF  288 (411)
Q Consensus       219 i~~l~~sp~g~~l~s-~s~dg~~I~vwd--~~~~~-----~~~~~~~~~--~~~~v~~l~~spdg~~l~s~s~dg~I~vw  288 (411)
                      -+.++|+.+.+.+.. -+.+-. |.-||  ..+|.     .+..++...  ..-..-.++...+|.+.++.-+.++|...
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~-V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYE-VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CccccccccCcEEEEEccCceE-EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence            356888888776554 445555 87787  55553     333333210  11123345566788888888888899999


Q ss_pred             EccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEc
Q 015198          289 SLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFG  368 (411)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (411)
                      |..+|+..                                                        .++++|......|+|.
T Consensus       239 dp~tGK~L--------------------------------------------------------~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  239 DPTTGKIL--------------------------------------------------------LEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCCCcEE--------------------------------------------------------EEEEcCCCceEEEEec
Confidence            99999865                                                        3899999889999997


Q ss_pred             cC--CEEEEEEe
Q 015198          369 SQ--NTVVIVSM  378 (411)
Q Consensus       369 ~~--~~~~~~~~  378 (411)
                      ..  +.+++.+.
T Consensus       263 Gkn~d~~yvT~a  274 (310)
T KOG4499|consen  263 GKNLDILYVTTA  274 (310)
T ss_pred             CCCccEEEEEeh
Confidence            65  66666665

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.85  E-value=1.2  Score=39.46  Aligned_cols=221  Identities=10%  Similarity=0.080  Sum_probs=117.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCC-----CcceEEeecCC-----CCEEEEEEeccCCe------------
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP-----FKETFRRDLKS-----GGFRIVEMLFRCNI------------   99 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~-----~~~~~~~~~~~-----~~~~~~~~~~~~~~------------   99 (411)
                      .--.-+.|+|+|.+.+-++.. .+...+||.++     ....+...+..     .......+.|+...            
T Consensus        21 ~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~  100 (336)
T TIGR03118        21 GLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGP  100 (336)
T ss_pred             cccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccc
Confidence            334458899999987776666 88999999972     12223333321     12233444444222            


Q ss_pred             EEEEecCCCCCCCCCeEEEEECCCCcE-----EEEEe--ecCc-eeEEEEcC----CeEEEE--EcCeEEEEEcCCceee
Q 015198          100 LALVGAGDNSQYPPTKVIIWDDHQSRC-----IGEFA--FRSD-VRSVKLSR----DRIVVV--LEHKIYVYSFVDLKLL  165 (411)
Q Consensus       100 ~~l~s~~~d~~~~d~~i~vwd~~~~~~-----~~~~~--~~~~-i~~~~~~~----~~~~~~--~dg~i~iwd~~~~~~~  165 (411)
                      ..++.++++     |+|.-|...-+..     ...+.  .... -..+++..    +..+.+  ..++|.+||-. .+.+
T Consensus       101 a~Fif~tEd-----GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~  174 (336)
T TIGR03118       101 SRFLFVTED-----GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPP  174 (336)
T ss_pred             eeEEEEeCC-----ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccc
Confidence            123444555     9999998432221     12222  1122 23445442    223333  57888888742 2221


Q ss_pred             EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198          166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF  244 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw  244 (411)
                      ..-.....+.--..++|-  +  +..   -.+.+++ |..+                   .++++.=+.+-.-|. |-+|
T Consensus       175 ~~~g~F~DP~iPagyAPF--n--Iqn---ig~~lyVtYA~q-------------------d~~~~d~v~G~G~G~-VdvF  227 (336)
T TIGR03118       175 PLPGSFIDPALPAGYAPF--N--VQN---LGGTLYVTYAQQ-------------------DADRNDEVAGAGLGY-VNVF  227 (336)
T ss_pred             cCCCCccCCCCCCCCCCc--c--eEE---ECCeEEEEEEec-------------------CCcccccccCCCcce-EEEE
Confidence            110000111011112221  1  211   1245665 4322                   222222233445677 9999


Q ss_pred             ECCCCceEEEEeCCCCCcceEEEEeCC------CCCEEEEEeCCCcEEEEEccccccCC
Q 015198          245 NTVDGTRLQEVRRGVDRAEIYSIALSP------NVQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~v~~l~~sp------dg~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      |+ .|..++++.....-...+.|+..|      .|.+|+---.||+|..||..+++-..
T Consensus       228 d~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g  285 (336)
T TIGR03118       228 TL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG  285 (336)
T ss_pred             cC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence            96 788888886443445677888765      46677766679999999999887553

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.40  E-value=2  Score=38.79  Aligned_cols=191  Identities=13%  Similarity=0.105  Sum_probs=84.0

Q ss_pred             CCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEE--ee----cCceeEEEEcCCeEEEEEcCeEEEEEc
Q 015198           86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF--AF----RSDVRSVKLSRDRIVVVLEHKIYVYSF  159 (411)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~--~~----~~~i~~~~~~~~~~~~~~dg~i~iwd~  159 (411)
                      ....+.++.|..+..-++.+..      +.|.. -...|+.=...  ..    .-...++.|..+.-+++.+..+.+...
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~------g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T~   87 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAY------GTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHTT   87 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETT------TEEEE-ESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEES
T ss_pred             CCCceEEEEEecCCEEEEEecC------CEEEE-ECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEec
Confidence            3446677777755554444443      54422 11223221111  11    234677888777666664433444444


Q ss_pred             CCceeeEEEecc-CCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcce-EEEeccccceeEEEecCCCCEEEEEcCC
Q 015198          160 VDLKLLHQIETL-ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI-KLINAHDSHIACFTLTLDGLLLATASTR  237 (411)
Q Consensus       160 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-~~~~~~~~~i~~l~~sp~g~~l~s~s~d  237 (411)
                      +.|+.=..+... .-+.....+...+++..+++ + ..|.|+.-...++.- .......+.+..+..+++|++++++..-
T Consensus        88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~-~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G  165 (302)
T PF14870_consen   88 DGGKTWERVPLSSKLPGSPFGITALGDGSAELA-G-DRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG  165 (302)
T ss_dssp             STTSS-EE----TT-SS-EEEEEEEETTEEEEE-E-TT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred             CCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-c-CCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence            444433333211 11111122222222333333 3 456666533333332 2234455778888899999988887655


Q ss_pred             CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      .. ..-||--... -...... ....|..|.|.|++.+.+.+ ..|.|++=+
T Consensus       166 ~~-~~s~~~G~~~-w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  166 NF-YSSWDPGQTT-WQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             SE-EEEE-TT-SS--EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             cE-EEEecCCCcc-ceEEccC-ccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            54 6677642211 1122221 45689999999998876644 788787766

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.25  E-value=3.1  Score=40.29  Aligned_cols=114  Identities=10%  Similarity=0.049  Sum_probs=68.1

Q ss_pred             CCCCCCeEEEEEcCCC-----CEEEEEeCCcEEEEecCCC-----cceEEeec---CCCCEEEEEEeccCCeEEEEecCC
Q 015198           41 DVDEIELISVSWNQDY-----GCFAAGTSCGFRIYNCEPF-----KETFRRDL---KSGGFRIVEMLFRCNILALVGAGD  107 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g-----~~la~g~dg~i~iw~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~  107 (411)
                      -|.-+.|..++|.|-+     .+||+-....|.||.+...     +.......   +.-+.-...+.|+|...+++.-..
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence            3455679999999863     4777777999999998631     21111111   011122234668887654443222


Q ss_pred             CCCCCCCeEEEEEC--CCCcEEEEEeecCceeEEEEcCCeEEEE--EcCe--EEEEEc
Q 015198          108 NSQYPPTKVIIWDD--HQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHK--IYVYSF  159 (411)
Q Consensus       108 d~~~~d~~i~vwd~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~--i~iwd~  159 (411)
                      .     ..-.++++  .+.+....++..+.|.|.+|.+||..++  .+..  -++||-
T Consensus       133 ~-----dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  133 R-----DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             C-----ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            1     22233443  3444555567889999999999998777  3333  467773

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.15  E-value=4.6  Score=41.59  Aligned_cols=193  Identities=13%  Similarity=0.112  Sum_probs=103.0

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCE------EEEEEecc-----------------CCeEEEEecCCCCCC
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF------RIVEMLFR-----------------CNILALVGAGDNSQY  111 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~------~~~~~~~~-----------------~~~~~l~s~~~d~~~  111 (411)
                      +..|.+++ ++.|.-.|..+++++.+...+....      .+..+.+.                 .+..+++ +..|   
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~-~T~D---  269 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL-PTSD---  269 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE-ecCC---
Confidence            44566666 8888888888878777765422111      01111111                 1123333 3334   


Q ss_pred             CCCeEEEEECCCCcEEEEEeecCcee-------------EEEEcC---CeEEEE--E----------cCeEEEEEcCCce
Q 015198          112 PPTKVIIWDDHQSRCIGEFAFRSDVR-------------SVKLSR---DRIVVV--L----------EHKIYVYSFVDLK  163 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~~~~~~i~-------------~~~~~~---~~~~~~--~----------dg~i~iwd~~~~~  163 (411)
                        +.|.-.|.++|+.+..+...+.|.             .+.-.|   ++.+++  .          +|.|+-+|.++|+
T Consensus       270 --g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       270 --ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             --CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence              999999999999998765433321             011111   344444  1          5789999999999


Q ss_pred             eeEEEeccCC---------Cc------ce-EEEccCCCceEEEEe-cC-----------------CCCeEEEEEcCCcce
Q 015198          164 LLHQIETLAN---------LR------GL-CCLSHHSSTSVLACP-GL-----------------QRGQVRIEHFGLNMI  209 (411)
Q Consensus       164 ~~~~~~~~~~---------~~------~~-~~~~~~~~~~~l~~~-g~-----------------~dg~i~i~~~~~~~~  209 (411)
                      .+..+.....         ..      .. ..++.+++..+++.. |.                 .+..+.++..+++..
T Consensus       348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~  427 (764)
T TIGR03074       348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER  427 (764)
T ss_pred             EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence            9988753210         00      00 122333333333221 10                 111222344445555


Q ss_pred             EEEeccccc---------eeEEEecC-CCC---EEEEEcCCCeEEEEEECCCCceEEEE
Q 015198          210 KLINAHDSH---------IACFTLTL-DGL---LLATASTRGTLIRIFNTVDGTRLQEV  255 (411)
Q Consensus       210 ~~~~~~~~~---------i~~l~~sp-~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (411)
                      -.++.....         ..-+.+.. +|+   .++.++.+|. ++++|.++|+.+...
T Consensus       428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ-IYVLDRRTGEPIVPV  485 (764)
T ss_pred             EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE-EEEEECCCCCEEeec
Confidence            444431111         11122322 563   7889999999 999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK10115 protease 2; Provisional

Probab=94.97  E-value=5  Score=41.05  Aligned_cols=240  Identities=13%  Similarity=0.065  Sum_probs=114.3

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CC----cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCC-CCCCeEE
Q 015198           45 IELISVSWNQDYGCFAAGT--SC----GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ-YPPTKVI  117 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~--dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-~~d~~i~  117 (411)
                      -.+..+.++|||++|+.+.  +|    .+++.|+.++..+ ...+.. ..  ..+.|.+++..++-...++. .....|.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence            4577789999999999876  33    3677788764322 222212 11  33666665433222221211 1336889


Q ss_pred             EEECCCC--cEEEEEee-cCcee-EEEEcCCeEEEE------EcCeEEEEEcC--CceeeEEEeccCCCcceEEEccCCC
Q 015198          118 IWDDHQS--RCIGEFAF-RSDVR-SVKLSRDRIVVV------LEHKIYVYSFV--DLKLLHQIETLANLRGLCCLSHHSS  185 (411)
Q Consensus       118 vwd~~~~--~~~~~~~~-~~~i~-~~~~~~~~~~~~------~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~  185 (411)
                      .+++.++  +....+.. ..... .+..+.++.+++      .++.+.+++..  +++....+..... ... .+.... 
T Consensus       203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~-  279 (686)
T PRK10115        203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD-HEY-SLDHYQ-  279 (686)
T ss_pred             EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC-CEE-EEEeCC-
Confidence            9999888  43444442 22222 333444665554      46788998852  3332222222222 122 222112 


Q ss_pred             ceEEEEecCCCCeEEE--EEcC-CcceEEEecc-c-cceeEEEecCCCCEEEEEcCCCe-EEEEEECCCCceEEEEeCCC
Q 015198          186 TSVLACPGLQRGQVRI--EHFG-LNMIKLINAH-D-SHIACFTLTLDGLLLATASTRGT-LIRIFNTVDGTRLQEVRRGV  259 (411)
Q Consensus       186 ~~~l~~~g~~dg~i~i--~~~~-~~~~~~~~~~-~-~~i~~l~~sp~g~~l~s~s~dg~-~I~vwd~~~~~~~~~~~~~~  259 (411)
                      ..+.+.+.......+|  .+.. ......+..+ . ..|..+.+. .+.++++...++. .+++++..+ ..+..+... 
T Consensus       280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~-~~~~~l~~~-  356 (686)
T PRK10115        280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKT-REVIGIAFD-  356 (686)
T ss_pred             CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCC-CceEEecCC-
Confidence            2333333211122233  2222 1222344444 2 367777776 3345555555665 144445433 334444311 


Q ss_pred             CCcceEEEEeC--CCCC-EEEEEeC---CCcEEEEEccccc
Q 015198          260 DRAEIYSIALS--PNVQ-WLAVASD---KGTVHIFSLRVRV  294 (411)
Q Consensus       260 ~~~~v~~l~~s--pdg~-~l~s~s~---dg~I~vwd~~~~~  294 (411)
                      ....+..+.++  +++. ++++.+.   -+.++.+|+.+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            22233334454  4443 4444333   3568888887754

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.96  E-value=0.91  Score=46.77  Aligned_cols=99  Identities=10%  Similarity=0.109  Sum_probs=65.8

Q ss_pred             CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-e
Q 015198           55 DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-F  132 (411)
Q Consensus        55 ~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~  132 (411)
                      .+..+++|+ .|.+...|+...-..+... .....++.+++|+.++..++.|-.+     |.|.+||+..++.++.+. +
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~n-e~v~~~Vtsvafn~dg~~l~~G~~~-----G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQN-ERVQGPVTSVAFNQDGSLLLAGLGD-----GHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcC-CccCCcceeeEecCCCceeccccCC-----CcEEEEEccCCcceeeeeec
Confidence            355678888 7888877776421111221 2456678899999999999988776     999999999999998887 5


Q ss_pred             cCceeEE---EEcCCeE-EEEEcCeEEEEEc
Q 015198          133 RSDVRSV---KLSRDRI-VVVLEHKIYVYSF  159 (411)
Q Consensus       133 ~~~i~~~---~~~~~~~-~~~~dg~i~iwd~  159 (411)
                      ..+..++   .+..++. .+..|..=.+|.+
T Consensus       172 ~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~l  202 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNSKLLTSDTGGSFWKL  202 (1206)
T ss_pred             CCccceEEEEEEeCCCcEEEEccCCCceEEE
Confidence            5444443   3334444 3334444346655

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.83  E-value=2  Score=35.85  Aligned_cols=168  Identities=14%  Similarity=0.089  Sum_probs=89.0

Q ss_pred             eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec-CceeE--EEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCC
Q 015198           99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-SDVRS--VKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLAN  173 (411)
Q Consensus        99 ~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~-~~i~~--~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~  173 (411)
                      +.++.+.+..   ....|++||+.+|+.+...... ..+..  +.-..+..+..  .++.-..+|.++.+.+..+.-.. 
T Consensus        56 g~i~esTG~y---g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G-  131 (262)
T COG3823          56 GHILESTGLY---GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG-  131 (262)
T ss_pred             CEEEEecccc---ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC-
Confidence            3555555442   3478999999999988776532 22221  22223444444  78999999998888877664333 


Q ss_pred             CcceEEEccCCCceEEEEecCCCCeEEE-E--EcCCcceEEEe--ccccc---eeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          174 LRGLCCLSHHSSTSVLACPGLQRGQVRI-E--HFGLNMIKLIN--AHDSH---IACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~--~~~~~~~~~~~--~~~~~---i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                        .-..+..+.++  |+.+   ||+-.+ |  ..+......+.  ....+   ++.+.| -+|.+.|=.-.+.. |...|
T Consensus       132 --eGWgLt~d~~~--Lims---dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~-I~rI~  202 (262)
T COG3823         132 --EGWGLTSDDKN--LIMS---DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTR-IARID  202 (262)
T ss_pred             --cceeeecCCcc--eEee---CCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecc-eEEEc
Confidence              23455555543  4442   344333 1  11111111111  11112   223333 25555554444444 55566


Q ss_pred             CCCCceEEEEeC----------CCCCcceEEEEeCCCCC-EEEEE
Q 015198          246 TVDGTRLQEVRR----------GVDRAEIYSIALSPNVQ-WLAVA  279 (411)
Q Consensus       246 ~~~~~~~~~~~~----------~~~~~~v~~l~~spdg~-~l~s~  279 (411)
                      ..+|+.+..+..          ..+....+.|++.|++. ++++|
T Consensus       203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            667766554432          11344678899999874 55554

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.83  E-value=0.55  Score=44.32  Aligned_cols=142  Identities=16%  Similarity=0.196  Sum_probs=85.3

Q ss_pred             CCeEEEEE----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCC------ceEEEEecCCCCeEEEEEc-CCcceEE
Q 015198          143 RDRIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS------TSVLACPGLQRGQVRIEHF-GLNMIKL  211 (411)
Q Consensus       143 ~~~~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~g~~dg~i~i~~~-~~~~~~~  211 (411)
                      .+..++..    ...++-.|++.|+.+..+..+..  .++.+.|..+      .+.|+ .-+..+..+|+.+ ++..+..
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd--vvVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD--VVVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCc--ceeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence            34445553    34678888999999999988776  3566655432      12232 2235556666443 2322222


Q ss_pred             Eec----cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE-EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEE
Q 015198          212 INA----HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE-VRRGVDRAEIYSIALSPNVQWLAVASDKGTVH  286 (411)
Q Consensus       212 ~~~----~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~  286 (411)
                      ...    ......+..-..+ -++|+++..|. |++||- -|....+ +.+  ....|..+..+.+|++|++.+. ..+.
T Consensus       554 ~esKdY~tKn~Fss~~tTes-GyIa~as~kGD-irLyDR-ig~rAKtalP~--lG~aIk~idvta~Gk~ilaTCk-~yll  627 (776)
T COG5167         554 VESKDYKTKNKFSSGMTTES-GYIAAASRKGD-IRLYDR-IGKRAKTALPG--LGDAIKHIDVTANGKHILATCK-NYLL  627 (776)
T ss_pred             eeehhccccccccccccccC-ceEEEecCCCc-eeeehh-hcchhhhcCcc--cccceeeeEeecCCcEEEEeec-ceEE
Confidence            211    1122223322233 48999999999 999994 4443333 333  4557999999999998876654 4588


Q ss_pred             EEEcccc
Q 015198          287 IFSLRVR  293 (411)
Q Consensus       287 vwd~~~~  293 (411)
                      +-|+.-.
T Consensus       628 L~d~~ik  634 (776)
T COG5167         628 LTDVPIK  634 (776)
T ss_pred             EEecccc
Confidence            8887654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.77  E-value=1.4  Score=43.60  Aligned_cols=100  Identities=10%  Similarity=0.114  Sum_probs=66.0

Q ss_pred             EEEecCCCCeEEEEEcCCcceEEEe--ccccceeEEEec--CCCCEEEEEcCCCeEEEEEECC---------CCceEEEE
Q 015198          189 LACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFTLT--LDGLLLATASTRGTLIRIFNTV---------DGTRLQEV  255 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~~~~~~~~--~~~~~i~~l~~s--p~g~~l~s~s~dg~~I~vwd~~---------~~~~~~~~  255 (411)
                      ++...+....+.||+.....+..-.  ...+.|..+.|.  |+|+.+.+.+-... |.+|--.         +...+..+
T Consensus        43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~-v~l~~Q~R~dy~~~~p~w~~i~~i  121 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH-VLLYTQLRYDYTNKGPSWAPIRKI  121 (631)
T ss_pred             EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE-EEEEEccchhhhcCCcccceeEEE
Confidence            3334445668888998876543333  347889999986  78998888888888 8888421         12344444


Q ss_pred             eCCCCC-cceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          256 RRGVDR-AEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       256 ~~~~~~-~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      ....+. .+|.+..|.++|.+++.+  .+.+.|++-.
T Consensus       122 ~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  122 DISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             EeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence            322233 589999999999766544  3458888643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.64  E-value=4.1  Score=38.55  Aligned_cols=143  Identities=14%  Similarity=0.111  Sum_probs=83.4

Q ss_pred             CeEEEEecCCCCCCCCCeEEEEECCCCc-----EEEEEeecCceeEEEEcC-----CeEEEE--EcCeEEEEEcC--Cce
Q 015198           98 NILALVGAGDNSQYPPTKVIIWDDHQSR-----CIGEFAFRSDVRSVKLSR-----DRIVVV--LEHKIYVYSFV--DLK  163 (411)
Q Consensus        98 ~~~~l~s~~~d~~~~d~~i~vwd~~~~~-----~~~~~~~~~~i~~~~~~~-----~~~~~~--~dg~i~iwd~~--~~~  163 (411)
                      +...++.|+..     |.++||+...+.     .+.+.+.+.+|..+..-+     +...++  .-..+.+|.+.  .|.
T Consensus        36 ~~d~IivGS~~-----G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~  110 (418)
T PF14727_consen   36 GSDKIIVGSYS-----GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT  110 (418)
T ss_pred             CccEEEEeccc-----cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence            34556666666     999999975543     445555788888887542     233343  67888888872  111


Q ss_pred             -------eeEEEeccCCCc---ceEEEccCC-CceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEE
Q 015198          164 -------LLHQIETLANLR---GLCCLSHHS-STSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLA  232 (411)
Q Consensus       164 -------~~~~~~~~~~~~---~~~~~~~~~-~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~  232 (411)
                             .+..+..|.-..   ..+.-.+.+ .+.-+++.-+.||.+.+++.+.-....+...---...+.|.+.-..|+
T Consensus       111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfv  190 (418)
T PF14727_consen  111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFV  190 (418)
T ss_pred             cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEE
Confidence                   222233332221   222222222 223444556799999998877655443332222223467778888888


Q ss_pred             EEcCCCeEEEEEEC
Q 015198          233 TASTRGTLIRIFNT  246 (411)
Q Consensus       233 s~s~dg~~I~vwd~  246 (411)
                      +++.... +.-|..
T Consensus       191 t~sss~~-l~~Yky  203 (418)
T PF14727_consen  191 TASSSWT-LECYKY  203 (418)
T ss_pred             EecCcee-EEEecH
Confidence            8888877 887764

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.43  E-value=3.2  Score=41.33  Aligned_cols=211  Identities=14%  Similarity=0.078  Sum_probs=108.5

Q ss_pred             EEEcCCCCEEEEEe-C----------CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           50 VSWNQDYGCFAAGT-S----------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        50 l~~s~~g~~la~g~-d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ++..|-|.-+|+.- +          -.|+||+...  ..+...+ -.+..++.|-|+.+..+++...+      |++.+
T Consensus        38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG--~lL~~~~-w~~~~lI~mgWs~~eeLI~v~k~------g~v~V  108 (829)
T KOG2280|consen   38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISG--QLLGRIL-WKHGELIGMGWSDDEELICVQKD------GTVHV  108 (829)
T ss_pred             EEecccCCceEEEecccccccccccceeEEEEeccc--cchHHHH-hcCCCeeeecccCCceEEEEecc------ceEEE
Confidence            44455555555554 2          2366776653  2222222 22337889999988777666443      99999


Q ss_pred             EECCCCcEEEEEe-----ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEec-cCCCcceEEEccCCC---ceE
Q 015198          119 WDDHQSRCIGEFA-----FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSS---TSV  188 (411)
Q Consensus       119 wd~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~  188 (411)
                      |++. |+.+....     ....|..+.+..+|..+. .+|.+.+-.-.....+..+.. +.......+|....+   ...
T Consensus       109 y~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~  187 (829)
T KOG2280|consen  109 YGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTI  187 (829)
T ss_pred             eecc-hhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCccee
Confidence            9953 33333311     234566666666777766 666666554222222223322 111111122222221   111


Q ss_pred             EEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198          189 LACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (411)
Q Consensus       189 l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (411)
                      ++-..-..+.... -.........+......+..+.+||++++|+--...|. |.+-+....+.+.++....+. +...+
T Consensus       188 ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~~-~p~qm  265 (829)
T KOG2280|consen  188 LLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDHD-PPKQM  265 (829)
T ss_pred             EEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCCC-chHhc
Confidence            1111100000000 00111112222223456778899999999999999999 999888877777777654232 22355


Q ss_pred             EeCCC
Q 015198          268 ALSPN  272 (411)
Q Consensus       268 ~~spd  272 (411)
                      +|..+
T Consensus       266 ~Wcgn  270 (829)
T KOG2280|consen  266 AWCGN  270 (829)
T ss_pred             eeecC
Confidence            55443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.39  E-value=4.1  Score=37.49  Aligned_cols=234  Identities=12%  Similarity=0.010  Sum_probs=113.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEee----cCCCCEEEEEEeccCC----e-EEEEecCCCCCC--CCC
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRD----LKSGGFRIVEMLFRCN----I-LALVGAGDNSQY--PPT  114 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~-~~l~s~~~d~~~--~d~  114 (411)
                      .-++|+|.|||++|++-..|.|++++.+.........    ..........++++|+    + .+++....+...  ...
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~   82 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN   82 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence            3578999999988776559999999933222111111    1245566788888883    3 344333110000  112


Q ss_pred             eEEEEECCCC-------cEEE-EEee----cCceeEEEEcCCeEEEE--E--------------cCeEEEEEcCCce---
Q 015198          115 KVIIWDDHQS-------RCIG-EFAF----RSDVRSVKLSRDRIVVV--L--------------EHKIYVYSFVDLK---  163 (411)
Q Consensus       115 ~i~vwd~~~~-------~~~~-~~~~----~~~i~~~~~~~~~~~~~--~--------------dg~i~iwd~~~~~---  163 (411)
                      .|.-|....+       +.+. .+..    ...-..|.|.||+.+.+  .              .|.|.-.+.. ++   
T Consensus        83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p~  161 (331)
T PF07995_consen   83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIPA  161 (331)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-T
T ss_pred             eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCCC
Confidence            3443443333       1111 1111    34556799999997776  1              1333333321 11   


Q ss_pred             ----------eeEEE-eccCCCcceEEEccCCC-ceEEEEecCCCCeEEE-EEcCC------------------------
Q 015198          164 ----------LLHQI-ETLANLRGLCCLSHHSS-TSVLACPGLQRGQVRI-EHFGL------------------------  206 (411)
Q Consensus       164 ----------~~~~~-~~~~~~~~~~~~~~~~~-~~~l~~~g~~dg~i~i-~~~~~------------------------  206 (411)
                                ....+ .+..   ....+++++. +.+.+.--+.++.=.| ....+                        
T Consensus       162 dnP~~~~~~~~~~i~A~GlR---N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  162 DNPFVGDDGADSEIYAYGLR---NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             TSTTTTSTTSTTTEEEE--S---EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCccccCCCceEEEEEeCCC---ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence                      01111 1111   3445666666 5555443223332233 11111                        


Q ss_pred             -----cceEEEeccccceeEEEecC-------CCCEEEEEcCCCeEEEEEECCCCceEE---EEeCCCCCcceEEEEeCC
Q 015198          207 -----NMIKLINAHDSHIACFTLTL-------DGLLLATASTRGTLIRIFNTVDGTRLQ---EVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       207 -----~~~~~~~~~~~~i~~l~~sp-------~g~~l~s~s~dg~~I~vwd~~~~~~~~---~~~~~~~~~~v~~l~~sp  271 (411)
                           .++..+.. ...+..+.|..       .|.+|++.-..+. |....+..+..+.   .+.. .....+..+++.|
T Consensus       239 ~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~-~~~~r~~~v~~~p  315 (331)
T PF07995_consen  239 CPGFVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGR-IWRLDLDEDGSVTEEEEFLG-GFGGRPRDVAQGP  315 (331)
T ss_dssp             -TTS---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEEECT-TSSS-EEEEEEET
T ss_pred             CCCcCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCE-EEEEeeecCCCccceEEccc-cCCCCceEEEEcC
Confidence                 11222333 34555666653       4556666665666 8877776553322   2222 1334799999999


Q ss_pred             CCCEEEEEeCCCcEE
Q 015198          272 NVQWLAVASDKGTVH  286 (411)
Q Consensus       272 dg~~l~s~s~dg~I~  286 (411)
                      ||.++++...+|.|+
T Consensus       316 DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  316 DGALYVSDDSDGKIY  330 (331)
T ss_dssp             TSEEEEEE-TTTTEE
T ss_pred             CCeEEEEECCCCeEe
Confidence            999888888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA02713 hypothetical protein; Provisional

Probab=94.29  E-value=6.3  Score=39.22  Aligned_cols=63  Identities=8%  Similarity=0.067  Sum_probs=38.4

Q ss_pred             CCCEEEEEcCC------CeEEEEEECCC-Cce--EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC--cEEEEEccccc
Q 015198          227 DGLLLATASTR------GTLIRIFNTVD-GTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKG--TVHIFSLRVRV  294 (411)
Q Consensus       227 ~g~~l~s~s~d------g~~I~vwd~~~-~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~I~vwd~~~~~  294 (411)
                      +|++.+.|+.+      .. +..||..+ .+-  +..+..  .......+.+  +|++.++|+.++  .+..||..+.+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~-ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTC-IFRYNTNTYNGWELITTTES--RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeCCCCCCcccee-EEEecCCCCCCeeEccccCc--ccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            56777777654      23 67899876 432  222222  2222222333  678888999888  67788877765

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.26  E-value=3.6  Score=36.33  Aligned_cols=230  Identities=11%  Similarity=0.097  Sum_probs=123.3

Q ss_pred             EEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEE
Q 015198           48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI  127 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~  127 (411)
                      .-.+|-+.+............+|..+-.-.+....+.+....+.++.|+|+...|.+....     ..-.||=..+|+.+
T Consensus        46 f~~a~~k~~~~~~~~~~r~~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~-----p~~iVElt~~Gdli  120 (316)
T COG3204          46 FPCAWFKAGQTNGLDLSRYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNK-----PAAIVELTKEGDLI  120 (316)
T ss_pred             eeeEEEeccccccccccchhhhccCCceEEEeccccccccccccceeeCCCcceEEEecCC-----CceEEEEecCCceE
Confidence            3344444444333322222455554432222222233445568889999988776665554     55556666889999


Q ss_pred             EEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeE-----EE--eccCC-CcceEEEccCCCceEEEEecC
Q 015198          128 GEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLH-----QI--ETLAN-LRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       128 ~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~-----~~--~~~~~-~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      .++.  .-.....+.+..++++++   .+..++++.+.....+.     .+  ..... ....-.+++++....+.++ -
T Consensus       121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a-K  199 (316)
T COG3204         121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA-K  199 (316)
T ss_pred             EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE-E
Confidence            9987  455667788888999888   67888888775442211     11  11111 2345566777766555543 2


Q ss_pred             CCCeEEEEEcCCcc----eEEEecc-------ccceeEEEecCC-CCEEEEEcCCCeEEEEEECCCCceEEEEe--CCCC
Q 015198          195 QRGQVRIEHFGLNM----IKLINAH-------DSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVR--RGVD  260 (411)
Q Consensus       195 ~dg~i~i~~~~~~~----~~~~~~~-------~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~--~~~~  260 (411)
                      +..-+.|+..+...    +.....+       -..|.++.|++. +.+|+-+.+++. +.-.|. .|+.+..+.  .+.|
T Consensus       200 Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~-l~Evd~-~G~~~~~lsL~~g~~  277 (316)
T COG3204         200 ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRR-LLEVDL-SGEVIELLSLTKGNH  277 (316)
T ss_pred             ccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCce-EEEEec-CCCeeeeEEeccCCC
Confidence            44445554333211    1111111       234667788864 556666677776 777775 555444332  2211


Q ss_pred             C-----cceEEEEeCCCCCEEEEEeCCCcEE
Q 015198          261 R-----AEIYSIALSPNVQWLAVASDKGTVH  286 (411)
Q Consensus       261 ~-----~~v~~l~~spdg~~l~s~s~dg~I~  286 (411)
                      .     ...-.++..++|.+. ..|+-+-.+
T Consensus       278 gL~~dipqaEGiamDd~g~lY-IvSEPnlfy  307 (316)
T COG3204         278 GLSSDIPQAEGIAMDDDGNLY-IVSEPNLFY  307 (316)
T ss_pred             CCcccCCCcceeEECCCCCEE-EEecCCcce
Confidence            1     123456666666533 334444333

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.18  E-value=3.1  Score=41.41  Aligned_cols=73  Identities=14%  Similarity=0.104  Sum_probs=49.9

Q ss_pred             cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC--CCCCEEEEEeCCCcEEEEEcc
Q 015198          217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS--PNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s--pdg~~l~s~s~dg~I~vwd~~  291 (411)
                      ....-+.-+.-++ ++....++..+.|||.+.+....+-.- ...+.|.++.|.  |||+.+++.+-.+.|.+|--.
T Consensus        30 ~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   30 SNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             CCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence            3444454555444 444455555599999988875443331 145689999987  799999999999999998543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.10  E-value=0.69  Score=47.91  Aligned_cols=143  Identities=9%  Similarity=0.051  Sum_probs=85.0

Q ss_pred             cCceeEEEEcCCeEEEE-----EcCeEEEEEcCCceeeE-----EEe----ccCCCcceEEEccCCCceEEEEecCCCCe
Q 015198          133 RSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLH-----QIE----TLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (411)
Q Consensus       133 ~~~i~~~~~~~~~~~~~-----~dg~i~iwd~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (411)
                      .-.|..+...+|....+     .+..|+.||+++...-.     -+.    .....+...++.|+|.-....+....|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            34566666677754443     34578999986432111     111    11223344455555543333333457888


Q ss_pred             EEEEEcCC--cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC--CCcceEEEEeCCCCC
Q 015198          199 VRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV--DRAEIYSIALSPNVQ  274 (411)
Q Consensus       199 i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~--~~~~v~~l~~spdg~  274 (411)
                      |++.....  ..+..+ .-....++++|+|.|+.+++|-..|+ +.-|. .+++....+.+..  ....|.+|+|-....
T Consensus       180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCe-EEEee-cccceeecccCCCcCCCcceeEEEEeccee
Confidence            88743332  222221 23456789999999999999999999 88885 4666555554421  235799999988777


Q ss_pred             EEEE
Q 015198          275 WLAV  278 (411)
Q Consensus       275 ~l~s  278 (411)
                      +|++
T Consensus       257 flvv  260 (1405)
T KOG3630|consen  257 FLVV  260 (1405)
T ss_pred             EEEE
Confidence            7664

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.05  E-value=3.5  Score=41.44  Aligned_cols=105  Identities=13%  Similarity=0.115  Sum_probs=66.9

Q ss_pred             CCceEEEEecCCCCeEEEEEcCC---------------------cceEEEeccccceeEEEec--CCCCEEEEEcCCCeE
Q 015198          184 SSTSVLACPGLQRGQVRIEHFGL---------------------NMIKLINAHDSHIACFTLT--LDGLLLATASTRGTL  240 (411)
Q Consensus       184 ~~~~~l~~~g~~dg~i~i~~~~~---------------------~~~~~~~~~~~~i~~l~~s--p~g~~l~s~s~dg~~  240 (411)
                      +....|++ +.+||.|.+|....                     ++...+. -....+.++++  ...++||+++.... 
T Consensus       112 g~~EVLl~-c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~-  188 (717)
T PF08728_consen  112 GGEEVLLL-CTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQE-  188 (717)
T ss_pred             CCeeEEEE-EecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCce-
Confidence            33445544 56899999985421                     0111111 24467889998  77888888888887 


Q ss_pred             EEEEECCCCc-eEEEEeCCCCCcceEEEEeCCCC-----C-EEEEEeCCCcEEEEEcc
Q 015198          241 IRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNV-----Q-WLAVASDKGTVHIFSLR  291 (411)
Q Consensus       241 I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg-----~-~l~s~s~dg~I~vwd~~  291 (411)
                      |.||-..... .........+...|-+|+|-++.     . +|++++-.|.+.+|++.
T Consensus       189 VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  189 VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            8888654321 11111121245578899997643     2 78889999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.90  E-value=4.2  Score=35.78  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=68.3

Q ss_pred             EEEccCCCceEEEEec--CCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE-CCCCceE-E
Q 015198          178 CCLSHHSSTSVLACPG--LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN-TVDGTRL-Q  253 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g--~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd-~~~~~~~-~  253 (411)
                      ...+.++++..+++..  .....+++..........+.  ...+....|++++...+....+.. .+++. ..+++.. .
T Consensus        27 ~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   27 TSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGEPV  103 (253)
T ss_pred             cceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCc-eEEEEecCCCcceeE
Confidence            3344444555565544  33344555544444333333  337788899999887777666666 66663 3344332 2


Q ss_pred             EEeCCCCCcceEEEEeCCCCCEEEEEe---CCCcEEEEEcccccc
Q 015198          254 EVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTVHIFSLRVRVV  295 (411)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~I~vwd~~~~~~  295 (411)
                      .+........|..+.+||||..+|...   .++.|.|=-+.....
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~  148 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGD  148 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCC
Confidence            233211222899999999999888766   357788887765543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK10115 protease 2; Provisional

Probab=93.82  E-value=8.9  Score=39.25  Aligned_cols=202  Identities=7%  Similarity=-0.017  Sum_probs=97.7

Q ss_pred             CEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---E-c-----CeEEEE
Q 015198           87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---L-E-----HKIYVY  157 (411)
Q Consensus        87 ~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~-d-----g~i~iw  157 (411)
                      ...+..+.++|++..++-+.+........|++.|+.+|+.+...-.... ..+.|.+|+..++   . +     ..|+.+
T Consensus       126 ~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        126 FYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             cEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            3455567788888766654332111235799999988864322211111 4589998876555   2 2     368888


Q ss_pred             EcCCc--eeeEEEeccCCCcceEEEcc-CCCceEEEEecCCCCeEEEEEc---CCcceEEEeccccceeEEEecCCCCEE
Q 015198          158 SFVDL--KLLHQIETLANLRGLCCLSH-HSSTSVLACPGLQRGQVRIEHF---GLNMIKLINAHDSHIACFTLTLDGLLL  231 (411)
Q Consensus       158 d~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~dg~i~i~~~---~~~~~~~~~~~~~~i~~l~~sp~g~~l  231 (411)
                      ++.++  +....+........+..... +....++.+....++.+.+++.   .+.....+.........+. +..+.++
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly  283 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY  283 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence            98877  33334443333333222222 2222233333334456776552   2222222222222222222 3333333


Q ss_pred             EEEcCCC-e-EEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          232 ATASTRG-T-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       232 ~s~s~dg-~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      +....++ . .|...++........+........|..+.+.. +.++++...+|.-+++-++
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEc
Confidence            3333222 2 14444554212223343321233688888873 3556666667765555444

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.79  E-value=0.37  Score=41.32  Aligned_cols=79  Identities=16%  Similarity=0.160  Sum_probs=50.4

Q ss_pred             eCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccc
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS  348 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (411)
                      +..++.+|++.+.+|.+++||+.+++..-.                                +.+....+.   +.. .+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~--------------------------------~~Si~pll~---~~~-~~   61 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLP--------------------------------PVSIAPLLN---SSP-VS   61 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccC--------------------------------CccHHHHhc---ccc-cc
Confidence            445788999999999999999999886421                                111111110   000 00


Q ss_pred             ccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          349 EWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                      +.      .+...+..+..+.++..++.-++|..|.|+.+.
T Consensus        62 ~~------~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   62 DK------SSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             cC------CCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            00      223445567777778888888899999998775

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.66  E-value=0.25  Score=29.60  Aligned_cols=31  Identities=32%  Similarity=0.457  Sum_probs=26.1

Q ss_pred             ceEEEEeCCCC---CEEEEEeCCCcEEEEEcccc
Q 015198          263 EIYSIALSPNV---QWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       263 ~v~~l~~spdg---~~l~s~s~dg~I~vwd~~~~  293 (411)
                      .|.++.|+|+.   .+|+.+-..|.|.|+|++++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            58899999854   48888888899999999964

It contains a characteristic DLL sequence motif.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.62  E-value=0.13  Score=51.49  Aligned_cols=178  Identities=15%  Similarity=0.209  Sum_probs=95.6

Q ss_pred             CeEEEEECCCCcEEEEE-e-ecCceeEEEEcCCe-EEE-EEcCeEEEEEcC--CceeeEEEec-----cCCCcceEEEcc
Q 015198          114 TKVIIWDDHQSRCIGEF-A-FRSDVRSVKLSRDR-IVV-VLEHKIYVYSFV--DLKLLHQIET-----LANLRGLCCLSH  182 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~-~-~~~~i~~~~~~~~~-~~~-~~dg~i~iwd~~--~~~~~~~~~~-----~~~~~~~~~~~~  182 (411)
                      +.+++-+....-...++ + +.+.+..+.|-... ..+ ..-|.+.+||+.  .|+....+..     ...+...+.+.+
T Consensus       111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp  190 (1283)
T KOG1916|consen  111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCP  190 (1283)
T ss_pred             hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecc
Confidence            55666654332211111 2 56777777775321 111 145777888873  3444333321     122223333333


Q ss_pred             C-CCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEE-----------ecCCCCEEEEEcCCCeEEEEEECC---
Q 015198          183 H-SSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFT-----------LTLDGLLLATASTRGTLIRIFNTV---  247 (411)
Q Consensus       183 ~-~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~-----------~sp~g~~l~s~s~dg~~I~vwd~~---  247 (411)
                      - .+..++ +.+..++.|++-.++......+.+|...+..++           ++|||..++++..||. +++|.+.   
T Consensus       191 ~~~~~~~i-c~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~g  268 (1283)
T KOG1916|consen  191 IAVNKVYI-CYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYITG  268 (1283)
T ss_pred             ccccccee-eeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeeec
Confidence            2 222344 447788899983333333344455766555443           5899999999999998 8888653   


Q ss_pred             --CCceEEEEeCCCCC-c-ceEEEEeCCC-------C--CEEEEEeCC-CcEEEEEccccccC
Q 015198          248 --DGTRLQEVRRGVDR-A-EIYSIALSPN-------V--QWLAVASDK-GTVHIFSLRVRVVG  296 (411)
Q Consensus       248 --~~~~~~~~~~~~~~-~-~v~~l~~spd-------g--~~l~s~s~d-g~I~vwd~~~~~~~  296 (411)
                        ...++...+.  |. . .|..+ +..+       +  .++++++.- ..+++|....-+|.
T Consensus       269 ~~~~rclhewkp--hd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  269 KIVHRCLHEWKP--HDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cccHhhhhccCC--CCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence              2234445554  33 2 23333 3322       1  244555543 45999998887766

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.57  E-value=1  Score=45.73  Aligned_cols=78  Identities=19%  Similarity=0.243  Sum_probs=54.5

Q ss_pred             ccceeEEEecCCCCEEEEEcCCCeEEEEEECCC----------Cce--EE-EEe------CCCCCcceEEEEeCCC---C
Q 015198          216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVD----------GTR--LQ-EVR------RGVDRAEIYSIALSPN---V  273 (411)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------~~~--~~-~~~------~~~~~~~v~~l~~spd---g  273 (411)
                      ...|..|.++|+|.+|+..|..|  |.|-.+..          |+.  .. ++.      .......|..+.|+|.   +
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            34688899999999999998876  44544431          111  11 111      1113457899999996   4


Q ss_pred             CEEEEEeCCCcEEEEEcccccc
Q 015198          274 QWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       274 ~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      ..|++-+.|+++++||+.....
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCCC
Confidence            7899999999999999976543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.54  E-value=0.43  Score=28.65  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=26.0

Q ss_pred             cceeEEEecCCC---CEEEEEcCCCeEEEEEECCCC
Q 015198          217 SHIACFTLTLDG---LLLATASTRGTLIRIFNTVDG  249 (411)
Q Consensus       217 ~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~~~  249 (411)
                      +.|.++.|+|+.   .+|+.+-..+. |.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcccC
Confidence            468899999754   48888888888 999999853

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.52  E-value=4.9  Score=35.34  Aligned_cols=159  Identities=14%  Similarity=0.068  Sum_probs=90.8

Q ss_pred             CeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE-CC
Q 015198           46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD-DH  122 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd-~~  122 (411)
                      .+.+.+++++++.+|...  ++.-.||-.......... +  ....+....|++++.+.+....+     ...+++. ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~--~g~~l~~PS~d~~g~~W~v~~~~-----~~~~~~~~~~   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-L--TGGSLTRPSWDPDGWVWTVDDGS-----GGVRVVRDSA   96 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-c--cCCccccccccCCCCEEEEEcCC-----CceEEEEecC
Confidence            688999999999887655  666566655543332222 1  22266777788876655554443     5555553 33


Q ss_pred             CCcEE-EEEe---ecCceeEEEEcCCeEEEE--E----cCeEEEEEcC---Cc---eeeEEEecc-CCCcceEEEccCCC
Q 015198          123 QSRCI-GEFA---FRSDVRSVKLSRDRIVVV--L----EHKIYVYSFV---DL---KLLHQIETL-ANLRGLCCLSHHSS  185 (411)
Q Consensus       123 ~~~~~-~~~~---~~~~i~~~~~~~~~~~~~--~----dg~i~iwd~~---~~---~~~~~~~~~-~~~~~~~~~~~~~~  185 (411)
                      +++.. ..+.   ....|.++.++|||..++  .    ++.|++--+.   .+   .....+... .....+..+.|.++
T Consensus        97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen   97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            44332 2222   122899999999998887  3    6788877652   23   111111111 11224567788888


Q ss_pred             ceEEEEecCCCCeEEE-EEcCCcceEEE
Q 015198          186 TSVLACPGLQRGQVRI-EHFGLNMIKLI  212 (411)
Q Consensus       186 ~~~l~~~g~~dg~i~i-~~~~~~~~~~~  212 (411)
                      ..+++.....++.+.. ....+.....+
T Consensus       177 ~~L~V~~~~~~~~~~~~v~~dG~~~~~l  204 (253)
T PF10647_consen  177 STLVVLGRSAGGPVVRLVSVDGGPSTPL  204 (253)
T ss_pred             CEEEEEeCCCCCceeEEEEccCCccccc
Confidence            7777766555554443 33444433333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.50  E-value=8.9  Score=38.24  Aligned_cols=190  Identities=13%  Similarity=0.055  Sum_probs=91.8

Q ss_pred             eEEEEecCCCC-CCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE--Ec------CeEEEEEcCCceeeEE
Q 015198           99 ILALVGAGDNS-QYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LE------HKIYVYSFVDLKLLHQ  167 (411)
Q Consensus        99 ~~~l~s~~~d~-~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~d------g~i~iwd~~~~~~~~~  167 (411)
                      +.+++.|+..+ ...-..+..+|..+++......  ....-.++++..+..+++  .|      ..+..||..+.+-.. 
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence            44445555442 2223678899988875443332  444556667777766666  44      457888887665332 


Q ss_pred             EeccCCCcceEEEccCCCceEEEEecCCCCeEEE-----EEcCCcceEEEeccccceeEEE-ecCCCCEEEEEcCCCe--
Q 015198          168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-----EHFGLNMIKLINAHDSHIACFT-LTLDGLLLATASTRGT--  239 (411)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-----~~~~~~~~~~~~~~~~~i~~l~-~sp~g~~l~s~s~dg~--  239 (411)
                      +..-..+.....++.- ++.+ .+.|+.||.-.+     |+.....-.............. ..-+|++.++|+.++.  
T Consensus       364 ~a~M~~~R~~~~v~~l-~g~i-YavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~  441 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAVL-DGKL-YAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN  441 (571)
T ss_pred             cCCccCccccceeEEE-CCEE-EEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence            1111111111222222 2233 344667765443     4433322222111111111111 1237888888886653  


Q ss_pred             ---EEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCc-----EEEEEcccc
Q 015198          240 ---LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT-----VHIFSLRVR  293 (411)
Q Consensus       240 ---~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~-----I~vwd~~~~  293 (411)
                         .+..||..+++-...-......... .++ .-++.+.+.|+.|+.     |..||..+.
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCC
Confidence               2778888776533211111011111 122 236677888887773     455555544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.35  E-value=7.2  Score=36.73  Aligned_cols=192  Identities=10%  Similarity=0.042  Sum_probs=85.3

Q ss_pred             eEEEEecCCCCCCCCCeEEEEECCC----CcEEEEEee----c----CceeEEEEcCCeEEEE---------EcCeEEEE
Q 015198           99 ILALVGAGDNSQYPPTKVIIWDDHQ----SRCIGEFAF----R----SDVRSVKLSRDRIVVV---------LEHKIYVY  157 (411)
Q Consensus        99 ~~~l~s~~~d~~~~d~~i~vwd~~~----~~~~~~~~~----~----~~i~~~~~~~~~~~~~---------~dg~i~iw  157 (411)
                      ..+++-+-..     +.|.|.|+.+    -+..+.+..    .    ..-..+..-|+|.+++         .-|.+.++
T Consensus        88 r~Li~PgL~S-----srIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll  162 (461)
T PF05694_consen   88 RYLILPGLRS-----SRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL  162 (461)
T ss_dssp             -EEEEEBTTT-------EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred             CcEEeeeecc-----CcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence            3455555454     8999999774    344455541    1    2233444567885555         13568888


Q ss_pred             EcCCceeeEEEeccCC-CcceEEEccCCCceEEEEec-------------------CCCCeEEEEEcCCcc-eEEEeccc
Q 015198          158 SFVDLKLLHQIETLAN-LRGLCCLSHHSSTSVLACPG-------------------LQRGQVRIEHFGLNM-IKLINAHD  216 (411)
Q Consensus       158 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g-------------------~~dg~i~i~~~~~~~-~~~~~~~~  216 (411)
                      |-++.+.....+.... ......+-+.+....++++.                   .....+.+|++..+. ++.+.--.
T Consensus       163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~  242 (461)
T PF05694_consen  163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE  242 (461)
T ss_dssp             -TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred             cCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence            8888887777755332 12233444455555565532                   135688899988755 44444322


Q ss_pred             --cceeEEEec--CCCCEEEEEc-CCCeEEEEEEC-CCCc----eEEEEeCCC--------C-------CcceEEEEeCC
Q 015198          217 --SHIACFTLT--LDGLLLATAS-TRGTLIRIFNT-VDGT----RLQEVRRGV--------D-------RAEIYSIALSP  271 (411)
Q Consensus       217 --~~i~~l~~s--p~g~~l~s~s-~dg~~I~vwd~-~~~~----~~~~~~~~~--------~-------~~~v~~l~~sp  271 (411)
                        .....|.|.  |+..+=+++. -..+ |..|-- ..++    .+..+....        -       ..-|+.|.+|.
T Consensus       243 ~g~~pLEvRflH~P~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl  321 (461)
T PF05694_consen  243 EGQMPLEVRFLHDPDANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL  321 (461)
T ss_dssp             TEEEEEEEEE-SSTT--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred             CCCceEEEEecCCCCccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence              234456665  4444433333 3344 555532 3442    222332210        0       23579999999


Q ss_pred             CCCEEEEEe-CCCcEEEEEccccccC
Q 015198          272 NVQWLAVAS-DKGTVHIFSLRVRVVG  296 (411)
Q Consensus       272 dg~~l~s~s-~dg~I~vwd~~~~~~~  296 (411)
                      |.++|..++ .+|.|+.||+......
T Consensus       322 DDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  322 DDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             TS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             CCCEEEEEcccCCcEEEEecCCCCCC
Confidence            999987655 6899999999987654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=92.91  E-value=7.6  Score=35.79  Aligned_cols=233  Identities=14%  Similarity=0.093  Sum_probs=109.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecC---CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLK---SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      ...+++|.|..+..-+++|.++.  ||......+.+.....   .....+..+.+.++..+++ +..      +.|..-+
T Consensus        45 ~~~l~~v~F~d~~~g~avG~~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~-G~~------g~i~~S~  115 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGSNRT--LLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIV-GQP------SLLLHTT  115 (334)
T ss_pred             CCceEEEEEeCCCcEEEEECCCE--EEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEe-CCC------ceEEEEC
Confidence            55789999987777788887664  4544444444443211   1123345565655443333 322      4333222


Q ss_pred             CCCCcEEEEEe----ecCc-eeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          121 DHQSRCIGEFA----FRSD-VRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       121 ~~~~~~~~~~~----~~~~-i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                       ..|+.-..+.    .... .....+.++..+++ ..|.|..=+ +.|+.=..+.... ......+...+++.++++ | 
T Consensus       116 -DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~-DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~-g-  190 (334)
T PRK13684        116 -DGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTT-DGGKNWEALVEDA-AGVVRNLRRSPDGKYVAV-S-  190 (334)
T ss_pred             -CCCCCCeEccCCcCCCCCceEEEEECCCcceeeeccceEEEEC-CCCCCceeCcCCC-cceEEEEEECCCCeEEEE-e-
Confidence             2222222211    1111 11222233322333 333332221 1222211111111 123445555666666554 4 


Q ss_pred             CCCeEEE-EEcCCcceEEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC--CCCcceEEEEeC
Q 015198          195 QRGQVRI-EHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG--VDRAEIYSIALS  270 (411)
Q Consensus       195 ~dg~i~i-~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~--~~~~~v~~l~~s  270 (411)
                      ..|.+.. ++..++.-... ..-...++.+.+.++++.++++ ..|. +++=....|..-......  .....+..+.+.
T Consensus       191 ~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~-~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~  268 (334)
T PRK13684        191 SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ-IRFNDPDDLESWSKPIIPEITNGYGYLDLAYR  268 (334)
T ss_pred             CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE-EEEccCCCCCccccccCCccccccceeeEEEc
Confidence            5666665 23332322222 2335678899999999877665 4565 543233444432222211  012357889999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccccc
Q 015198          271 PNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       271 pdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      +++..++ ++.+|.|. ...+.++
T Consensus       269 ~~~~~~~-~G~~G~v~-~S~d~G~  290 (334)
T PRK13684        269 TPGEIWA-GGGNGTLL-VSKDGGK  290 (334)
T ss_pred             CCCCEEE-EcCCCeEE-EeCCCCC
Confidence            9877554 55677444 4444444

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.87  E-value=0.8  Score=39.27  Aligned_cols=68  Identities=19%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             ecCCCCEEEEEcCCCeEEEEEECCCCceEEEE------eCC------CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEV------RRG------VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       224 ~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~------~~~------~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      +..++.+|++-+.+|. +++||+.+++.+..-      -..      .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus        18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            4457889999999999 999999988754322      110      1345788999999998877765 4778999876


Q ss_pred             cc
Q 015198          292 VR  293 (411)
Q Consensus       292 ~~  293 (411)
                      -+
T Consensus        96 L~   97 (219)
T PF07569_consen   96 LG   97 (219)
T ss_pred             cc
Confidence            55

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.78  E-value=8.3  Score=35.90  Aligned_cols=187  Identities=10%  Similarity=0.099  Sum_probs=100.1

Q ss_pred             CCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEE------EcCCeEEEE----E-c--CeEEEEEcC--C
Q 015198           97 CNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVK------LSRDRIVVV----L-E--HKIYVYSFV--D  161 (411)
Q Consensus        97 ~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~----~-d--g~i~iwd~~--~  161 (411)
                      |...++++....     +-+.+||+ .|+.++.+. .+.++.+.      +.....-++    . +  ..|++|.+.  +
T Consensus        66 p~kSlIigTdK~-----~GL~VYdL-~Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~  138 (381)
T PF02333_consen   66 PAKSLIIGTDKK-----GGLYVYDL-DGKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT  138 (381)
T ss_dssp             GGG-EEEEEETT-----TEEEEEET-TS-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred             cccceEEEEeCC-----CCEEEEcC-CCcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence            344455555554     88999995 566666664 22333333      322221122    2 2  468999774  3


Q ss_pred             ceeeEEEec-------cCCCcceEEEccC-CCceEEEEecCCCCeEEEEEcC----C----cceEEEeccccceeEEEec
Q 015198          162 LKLLHQIET-------LANLRGLCCLSHH-SSTSVLACPGLQRGQVRIEHFG----L----NMIKLINAHDSHIACFTLT  225 (411)
Q Consensus       162 ~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~l~~~g~~dg~i~i~~~~----~----~~~~~~~~~~~~i~~l~~s  225 (411)
                      +. +..+..       ......-+|+-.+ .++.+.++....+|.+..|...    +    +.++.|.. ...+..+...
T Consensus       139 g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVD  216 (381)
T PF02333_consen  139 GE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVD  216 (381)
T ss_dssp             TE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEE
T ss_pred             Cc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEe
Confidence            43 333321       1112234555444 3455556666688887764432    2    34566654 3467888888


Q ss_pred             CCCCEEEEEcCCCeEEEEEECCCC-----ceEEEEeCCCCCcceEEEEeC--CCCC--EEEEEeCCCcEEEEEcccc
Q 015198          226 LDGLLLATASTRGTLIRIFNTVDG-----TRLQEVRRGVDRAEIYSIALS--PNVQ--WLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       226 p~g~~l~s~s~dg~~I~vwd~~~~-----~~~~~~~~~~~~~~v~~l~~s--pdg~--~l~s~s~dg~I~vwd~~~~  293 (411)
                      .....|+.+-++.. |+-|+.+..     +.+....+......|-.|++-  .+++  +|++.-.+++..||+.+..
T Consensus       217 De~g~LYvgEE~~G-IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  217 DETGRLYVGEEDVG-IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             TTTTEEEEEETTTE-EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             cccCCEEEecCccE-EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            88889999999998 888887522     222222232244577778775  3433  4455556778999998864

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.61  E-value=7.8  Score=36.27  Aligned_cols=140  Identities=14%  Similarity=0.098  Sum_probs=72.5

Q ss_pred             CceeEEEEcCCeEEEEEc---------------CeEEEEEcCC--cee--eEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          134 SDVRSVKLSRDRIVVVLE---------------HKIYVYSFVD--LKL--LHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       134 ~~i~~~~~~~~~~~~~~d---------------g~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      .....|+|.++|++.+.+               +.|.+++-.+  |+.  ...+.....  ....+.+.+++ ++++  .
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~--~p~Gi~~~~~G-lyV~--~   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS--MVTGLAVAVGG-VYVA--T   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC--CccceeEecCC-EEEe--C
Confidence            345677888887776621               2677776432  332  223322222  23445555566 4332  2


Q ss_pred             CCCeEEEEEcCC------cceEEEe---c----cccceeEEEecCCCCEEEEEcCC-------------------CeEEE
Q 015198          195 QRGQVRIEHFGL------NMIKLIN---A----HDSHIACFTLTLDGLLLATASTR-------------------GTLIR  242 (411)
Q Consensus       195 ~dg~i~i~~~~~------~~~~~~~---~----~~~~i~~l~~sp~g~~l~s~s~d-------------------g~~I~  242 (411)
                      ....+++.+..+      +....+.   .    +......++|.|||.+.++-+..                   +. |.
T Consensus        89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~  167 (367)
T TIGR02604        89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LF  167 (367)
T ss_pred             CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce-EE
Confidence            343333433322      1111112   1    23446789999999876654421                   44 55


Q ss_pred             EEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198          243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK  282 (411)
Q Consensus       243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d  282 (411)
                      -+|...++. ..+..  .-.....++|+++|+++++-..+
T Consensus       168 r~~pdg~~~-e~~a~--G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       168 RYNPDGGKL-RVVAH--GFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             EEecCCCeE-EEEec--CcCCCccceECCCCCEEEEccCC
Confidence            566544443 23332  12345789999999987664433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.43  E-value=0.4  Score=40.42  Aligned_cols=99  Identities=8%  Similarity=0.009  Sum_probs=54.8

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEecc-CCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-e
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-F  132 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~  132 (411)
                      +.-+++|+ +|.|.+|+..-......... .....+..+... .++.+..++..+     +.|+.|++.-++.+.... |
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-s~~e~i~~~Ip~~~~~~~~c~~~~d-----g~ir~~n~~p~k~~g~~g~h  143 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC-SGEESIDLGIPNGRDSSLGCVGAQD-----GRIRACNIKPNKVLGYVGQH  143 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhh-cccccceeccccccccceeEEeccC-----CceeeeccccCceeeeeccc
Confidence            45677888 99999999874333332211 222233333333 233445555555     999999988888776655 4


Q ss_pred             c-CceeEEEEcCCeEEEE-----EcCeEEEEEcC
Q 015198          133 R-SDVRSVKLSRDRIVVV-----LEHKIYVYSFV  160 (411)
Q Consensus       133 ~-~~i~~~~~~~~~~~~~-----~dg~i~iwd~~  160 (411)
                      . .++..+.....+.++.     .|..++.|++.
T Consensus       144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            4 3443333333333332     34555566553

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.42  E-value=4.2  Score=38.70  Aligned_cols=143  Identities=12%  Similarity=0.143  Sum_probs=86.6

Q ss_pred             ccCCe-EEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe---------EEEE-EcCeEEEEEcCC-c
Q 015198           95 FRCNI-LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR---------IVVV-LEHKIYVYSFVD-L  162 (411)
Q Consensus        95 ~~~~~-~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~-~dg~i~iwd~~~-~  162 (411)
                      +..+. .++..++..     ..++-.|++.|+.+.+......+ -+.|.|+.         .++. .+..|.-.|.+- |
T Consensus       475 h~~dssli~~dg~~~-----~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g  548 (776)
T COG5167         475 HDNDSSLIYLDGGER-----DKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG  548 (776)
T ss_pred             ecCCcceEEecCCCc-----ccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccC
Confidence            33433 444455544     78888999999999998855555 56666642         3333 677777777643 3


Q ss_pred             eeeEEEeccC--CCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCe
Q 015198          163 KLLHQIETLA--NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGT  239 (411)
Q Consensus       163 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~  239 (411)
                      ..+.......  ......+...... .++|+ ++..|.|+++++-+ +....+.+....|..|..+.+|+++++.+.. .
T Consensus       549 NKi~v~esKdY~tKn~Fss~~tTes-GyIa~-as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y  625 (776)
T COG5167         549 NKIKVVESKDYKTKNKFSSGMTTES-GYIAA-ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-Y  625 (776)
T ss_pred             CceeeeeehhccccccccccccccC-ceEEE-ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-e
Confidence            2222221111  0011112222222 35665 66899999977655 4445567778899999999999987766643 4


Q ss_pred             EEEEEECC
Q 015198          240 LIRIFNTV  247 (411)
Q Consensus       240 ~I~vwd~~  247 (411)
                       +.+-|++
T Consensus       626 -llL~d~~  632 (776)
T COG5167         626 -LLLTDVP  632 (776)
T ss_pred             -EEEEecc
Confidence             6677764

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.28  E-value=3.6  Score=39.92  Aligned_cols=114  Identities=16%  Similarity=0.093  Sum_probs=65.6

Q ss_pred             CceeEEEEcCCe-----EEEE--EcCeEEEEEcC-----CceeeEEEecc---CCCcceEEEccCCCceEEEEecCCCCe
Q 015198          134 SDVRSVKLSRDR-----IVVV--LEHKIYVYSFV-----DLKLLHQIETL---ANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (411)
Q Consensus       134 ~~i~~~~~~~~~-----~~~~--~dg~i~iwd~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (411)
                      ..|..+.|.|-+     .+++  ....|.+|.+.     ..+.+.....+   .-++-.-...|+|+..+|++-...|-.
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            357788888752     3444  67889999983     23333222111   122222334566666677665445544


Q ss_pred             EEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECC
Q 015198          199 VRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV  247 (411)
Q Consensus       199 i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~  247 (411)
                      |.- -..+...++.--...+.|.|.+|.+||+.|+.+-...-.-++||-.
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            433 2223333333335678899999999999877654333237899843

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.24  E-value=3.7  Score=40.94  Aligned_cols=75  Identities=19%  Similarity=0.104  Sum_probs=45.9

Q ss_pred             CCCCCCccccCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceE-EeecCCCCEEEEEEeccCCeEEEEecC
Q 015198           31 SFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETF-RRDLKSGGFRIVEMLFRCNILALVGAG  106 (411)
Q Consensus        31 ~~~~~~~~~~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~  106 (411)
                      .+|+.+....-.|. .+-.+.|+.+..+|++.-+|++.+|++....... ..-+......|..+.+..+|.++.+.+
T Consensus        71 ~sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~  146 (829)
T KOG2280|consen   71 ISGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS  146 (829)
T ss_pred             ccccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecC
Confidence            34444444444555 7889999999888888779999999986421111 011122333455655555776666554

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=91.64  E-value=8.5  Score=35.86  Aligned_cols=169  Identities=16%  Similarity=0.204  Sum_probs=92.3

Q ss_pred             CeEEEEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc---eeeEEEeccCCCcceEEEccCC
Q 015198          114 TKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCCLSHHS  184 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~  184 (411)
                      +.|.+.| +....+..++   ....|.++.|..|-.+++   .-.-+.+.|+.+.   +.+..++.+.   ...-+++-+
T Consensus       406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPG---fS~YLHpig  481 (603)
T COG4880         406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPG---FSEYLHPIG  481 (603)
T ss_pred             ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCC---chhhccccC
Confidence            4566666 5566666665   478899999999988888   4556788888654   4444554433   334567777


Q ss_pred             CceEEEEecCCCCeEEE--EEcCC----cceEEEec--ccc----ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE
Q 015198          185 STSVLACPGLQRGQVRI--EHFGL----NMIKLINA--HDS----HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL  252 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i--~~~~~----~~~~~~~~--~~~----~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~  252 (411)
                      ++.+|-. |..+|.++|  ++...    +.+....-  .-.    .-.+..|+|...+++.-...+. . |+-++.|..+
T Consensus       482 en~~lGv-G~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~g-y-if~iedg~kl  558 (603)
T COG4880         482 ENRLLGV-GAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGG-Y-IFFIEDGSKL  558 (603)
T ss_pred             CCcEEEe-ecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCcc-E-EEEEecCcee
Confidence            7777765 778899888  44332    11111110  001    1123445555554444333333 2 5555666433


Q ss_pred             EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      ..  ...+...+...-|..|  +|...+.. .+.++|-++-+
T Consensus       559 ~k--~~e~k~na~RA~fi~d--ylY~vg~~-ev~~ldenswe  595 (603)
T COG4880         559 RK--RAERKLNADRAFFIKD--YLYLVGGN-EVWKLDENSWE  595 (603)
T ss_pred             ee--hhhhcccceeeEEecc--eEEEeccc-eeEEeccchHh
Confidence            22  2225545555555544  44443332 25555544443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=91.54  E-value=14  Score=35.91  Aligned_cols=137  Identities=13%  Similarity=0.040  Sum_probs=67.7

Q ss_pred             cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccc---eeEEEecCC
Q 015198          151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSH---IACFTLTLD  227 (411)
Q Consensus       151 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~---i~~l~~sp~  227 (411)
                      ....+++| ..|.....+.........  +...+++.+++..+   ..++..+..++.+.........   =..+..-|+
T Consensus       127 ~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~---~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~n  200 (477)
T PF05935_consen  127 SSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG---NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPN  200 (477)
T ss_dssp             EEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB---TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TT
T ss_pred             CceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC---CceEEEcCCCCEEEeeecCCcccccccccEECCC
Confidence            35566677 345665555443321111  44556677776543   6777777778766665433322   345667799


Q ss_pred             CCEEEEEcC-------------CCeEEEEEECCCCceEEEEeCCCCC-------------------------cceEEEEe
Q 015198          228 GLLLATAST-------------RGTLIRIFNTVDGTRLQEVRRGVDR-------------------------AEIYSIAL  269 (411)
Q Consensus       228 g~~l~s~s~-------------dg~~I~vwd~~~~~~~~~~~~~~~~-------------------------~~v~~l~~  269 (411)
                      |++|+.+..             ... |..+| .+|+.+..+....|-                         .-++++.+
T Consensus       201 Gn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y  278 (477)
T PF05935_consen  201 GNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY  278 (477)
T ss_dssp             S-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred             CCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence            998887772             122 55666 677766654321110                         14788999


Q ss_pred             CC-CCCEEEEEeCCCcEEEEEcccccc
Q 015198          270 SP-NVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       270 sp-dg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      .+ ++.+|+++-....|...|.++++.
T Consensus       279 d~~dd~iivSsR~~s~V~~Id~~t~~i  305 (477)
T PF05935_consen  279 DPSDDSIIVSSRHQSAVIKIDYRTGKI  305 (477)
T ss_dssp             ETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred             eCCCCeEEEEcCcceEEEEEECCCCcE
Confidence            88 555555555555677777666653

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.27  E-value=17  Score=36.28  Aligned_cols=232  Identities=14%  Similarity=0.082  Sum_probs=106.6

Q ss_pred             CCCCEEEEEe-C------CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCC-CCCCCCeEEEEECCCCc
Q 015198           54 QDYGCFAAGT-S------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-SQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        54 ~~g~~la~g~-d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~~~d~~i~vwd~~~~~  125 (411)
                      ..+.++++|+ +      ..+..||..+........+ ........+....+..+ +.|+.+ ....-..+..||..+++
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-~~~r~~~~~~~~~~~lY-v~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-PSPRCRVGVAVLNGKLY-VVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-CcccccccEEEECCEEE-EEccccCCCcccceEEEecCCCCc
Confidence            3455677777 5      3577888776543333333 22222333444445444 444544 23344788899987776


Q ss_pred             EEEEEe--ecCceeEEEEcCCeEEEE--Ec-----CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          126 CIGEFA--FRSDVRSVKLSRDRIVVV--LE-----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       126 ~~~~~~--~~~~i~~~~~~~~~~~~~--~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      -...-.  ....-.+++......+++  .|     .+|..||..+.+-...-.... .....+...- ++.+.+ .|+.+
T Consensus       361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~-~g~iYi-~GG~~  437 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVL-GGKLYI-IGGGD  437 (571)
T ss_pred             eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEE-CCEEEE-EcCcC
Confidence            443211  122222233333333444  23     347777776543221111111 1111222221 233333 35544


Q ss_pred             CeE------EEEEcCCcceEEE---eccccceeEEEecCCCCEEEEEcCCCe----EEEEEECCCCceEEEEeCCCCCcc
Q 015198          197 GQV------RIEHFGLNMIKLI---NAHDSHIACFTLTLDGLLLATASTRGT----LIRIFNTVDGTRLQEVRRGVDRAE  263 (411)
Q Consensus       197 g~i------~i~~~~~~~~~~~---~~~~~~i~~l~~sp~g~~l~s~s~dg~----~I~vwd~~~~~~~~~~~~~~~~~~  263 (411)
                      +.-      ..++.....-..+   ........ ++ .-++.+.+.|+.|+.    .|..||..+.+-...-........
T Consensus       438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~  515 (571)
T KOG4441|consen  438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA  515 (571)
T ss_pred             CCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence            433      2333333222111   11111111 22 236778888887751    277888877664433211112222


Q ss_pred             eEEEEeCCCCCEEEEEeCCC-----cEEEEEccccc
Q 015198          264 IYSIALSPNVQWLAVASDKG-----TVHIFSLRVRV  294 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg-----~I~vwd~~~~~  294 (411)
                      +....  -+++..++|+.||     +|..||..+.+
T Consensus       516 ~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  516 VGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             ccEEE--ECCEEEEEecccCccccceeEEcCCCCCc
Confidence            22222  2567778888886     46666655543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.65  E-value=2.5  Score=39.57  Aligned_cols=102  Identities=14%  Similarity=0.180  Sum_probs=67.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc--eEEeecCCCCEEEEEEeccCCe-EEEEecCCCCCCCCCe
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTK  115 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~d~~  115 (411)
                      -...+++|.++.|++|.+.||+-. +..|.+++..+.+.  ....+.+.+...+..+.|..+- ..+++.        ..
T Consensus        62 dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~--------~G  133 (657)
T KOG2377|consen   62 DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITD--------QG  133 (657)
T ss_pred             eecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEec--------CC
Confidence            344566999999999999999998 99999999854332  2223334556668888887653 344442        34


Q ss_pred             EEEEECCC-CcEEEEEe-ecCceeEEEEcCCeEEEE
Q 015198          116 VIIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV  149 (411)
Q Consensus       116 i~vwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~  149 (411)
                      +-+|.... .+.++..+ +...|+...|.++...+.
T Consensus       134 ~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  134 IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             eEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence            45554322 22233333 777888888988877666

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.03  E-value=1.1  Score=26.13  Aligned_cols=30  Identities=20%  Similarity=0.199  Sum_probs=21.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe--C--CcEEEE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT--S--CGFRIY   70 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~--d--g~i~iw   70 (411)
                      ......-....|+|||+.|+..+  +  |...||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34455678999999999998776  6  666666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PHA02713 hypothetical protein; Provisional

Probab=90.02  E-value=16  Score=36.41  Aligned_cols=25  Identities=12%  Similarity=0.036  Sum_probs=19.5

Q ss_pred             CCCEEEEEcCCC--eEEEEEECCCCceE
Q 015198          227 DGLLLATASTRG--TLIRIFNTVDGTRL  252 (411)
Q Consensus       227 ~g~~l~s~s~dg--~~I~vwd~~~~~~~  252 (411)
                      +|++.++|+.++  . +..||..+.+-.
T Consensus       512 ~~~iyv~Gg~~~~~~-~e~yd~~~~~W~  538 (557)
T PHA02713        512 DNTIMMLHCYESYML-QDTFNVYTYEWN  538 (557)
T ss_pred             CCEEEEEeeecceee-hhhcCccccccc
Confidence            778888998888  6 788888776643

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.77  E-value=2.3  Score=25.01  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=24.5

Q ss_pred             CCCCEEEEEcC-CCeEEEEEECCCCceEEEEeCC
Q 015198          226 LDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRG  258 (411)
Q Consensus       226 p~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~  258 (411)
                      |++++|+++.. ++. |.++|..+++.+..+..+
T Consensus         1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECC
Confidence            57777766654 566 999999999888888764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.67  E-value=6.1  Score=34.35  Aligned_cols=140  Identities=10%  Similarity=0.030  Sum_probs=75.3

Q ss_pred             CeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE----E--cCeEEEEEcCC----ceeeEEEeccCCCcceEEEc
Q 015198          114 TKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV----L--EHKIYVYSFVD----LKLLHQIETLANLRGLCCLS  181 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~----~--dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~  181 (411)
                      -.-.+||+.+++.. .+.  ...-..+-.+.+||+++.    .  ...+++++..+    ......-..-....+.-...
T Consensus        46 a~s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~  124 (243)
T PF07250_consen   46 AHSVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT  124 (243)
T ss_pred             EEEEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence            34568898887653 233  222233345778998888    2  24578887643    11110000011112223333


Q ss_pred             cCCCceEEEEecCCCCeEEEEEcCC--cceEE---Eec-----cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce
Q 015198          182 HHSSTSVLACPGLQRGQVRIEHFGL--NMIKL---INA-----HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR  251 (411)
Q Consensus       182 ~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~---~~~-----~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~  251 (411)
                      .-++|+.|++.|....+..+|....  .....   +..     ....---+...|+|++++.+..+..   |||..+.+.
T Consensus       125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~---i~d~~~n~v  201 (243)
T PF07250_consen  125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI---IYDYKTNTV  201 (243)
T ss_pred             ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE---EEeCCCCeE
Confidence            3467888888776655555554421  11111   110     1111224566799999998887654   789888877


Q ss_pred             EEEEeC
Q 015198          252 LQEVRR  257 (411)
Q Consensus       252 ~~~~~~  257 (411)
                      ++.+..
T Consensus       202 ~~~lP~  207 (243)
T PF07250_consen  202 VRTLPD  207 (243)
T ss_pred             EeeCCC
Confidence            777664

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.19  E-value=5.4  Score=42.42  Aligned_cols=132  Identities=12%  Similarity=0.232  Sum_probs=82.5

Q ss_pred             CeEEEEECCCCcEEEEEe-ecCceeEEEEc-C-------C--eEEEE-EcCeEEEEEcC----Cce---eeEEEeccCCC
Q 015198          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLS-R-------D--RIVVV-LEHKIYVYSFV----DLK---LLHQIETLANL  174 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~-~-------~--~~~~~-~dg~i~iwd~~----~~~---~~~~~~~~~~~  174 (411)
                      +.+.+|+.+++.....+. ....|..+..- |       .  ..+++ .--.|.++-+.    ++.   ....+......
T Consensus        99 n~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg  178 (1311)
T KOG1900|consen   99 NNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDG  178 (1311)
T ss_pred             CeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCC
Confidence            899999999977777776 56666666532 2       1  11222 44455555441    111   11223444556


Q ss_pred             cceEEEccCCCceEEEEecCCCCeEEE--EEcC----Cc-----------------ceEEEe-ccccceeEEEecCCCCE
Q 015198          175 RGLCCLSHHSSTSVLACPGLQRGQVRI--EHFG----LN-----------------MIKLIN-AHDSHIACFTLTLDGLL  230 (411)
Q Consensus       175 ~~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~----~~-----------------~~~~~~-~~~~~i~~l~~sp~g~~  230 (411)
                      +.+.++....+|+++. +| .||.|+=  +...    ++                 .+..+. .+..+|..+++......
T Consensus       179 ~~V~~I~~t~nGRIF~-~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I  256 (1311)
T KOG1900|consen  179 VSVNCITYTENGRIFF-AG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI  256 (1311)
T ss_pred             ceEEEEEeccCCcEEE-ee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence            6778888777777765 35 5665543  2211    11                 112223 56789999999988889


Q ss_pred             EEEEcCCCeEEEEEECCC
Q 015198          231 LATASTRGTLIRIFNTVD  248 (411)
Q Consensus       231 l~s~s~dg~~I~vwd~~~  248 (411)
                      |.+-++.+. |.+||+..
T Consensus       257 lY~lsek~~-v~~Y~i~~  273 (1311)
T KOG1900|consen  257 LYVLSEKGT-VSAYDIGG  273 (1311)
T ss_pred             eeeeccCce-EEEEEccC
Confidence            999999999 99999965

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.09  E-value=11  Score=40.37  Aligned_cols=143  Identities=17%  Similarity=0.266  Sum_probs=83.6

Q ss_pred             EEEEcCeEEEEEcCCceeeEEEeccCCCcceEEE-ccCC-----CceEEEEecCCCCeEEEEE----cCCcce------E
Q 015198          147 VVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL-SHHS-----STSVLACPGLQRGQVRIEH----FGLNMI------K  210 (411)
Q Consensus       147 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~l~~~g~~dg~i~i~~----~~~~~~------~  210 (411)
                      ++..|+.+.+|+.+++.....+.+..+.+-.+.+ .|.|     .-+++.+.+ .--.|.|.-    ......      .
T Consensus        94 WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~~~~~~~~~~f~~~~  172 (1311)
T KOG1900|consen   94 WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSFDEFTGELSIFNTSF  172 (1311)
T ss_pred             EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEeccccCcccccccce
Confidence            3348999999999987777777665554333322 2222     112222222 222333311    111111      2


Q ss_pred             EEeccccceeEEEecCCCCEEEEEcCCCeEEE--EEECCCC---c-e----------------EEEEeCCCCCcceEEEE
Q 015198          211 LINAHDSHIACFTLTLDGLLLATASTRGTLIR--IFNTVDG---T-R----------------LQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       211 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~--vwd~~~~---~-~----------------~~~~~~~~~~~~v~~l~  268 (411)
                      .+......|.++....+|+.+++|- ||. |+  +|....|   + +                +..+. +.+..+|..+.
T Consensus       173 ~i~~dg~~V~~I~~t~nGRIF~~G~-dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~  249 (1311)
T KOG1900|consen  173 KISVDGVSVNCITYTENGRIFFAGR-DGN-LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQIT  249 (1311)
T ss_pred             eeecCCceEEEEEeccCCcEEEeec-CCC-EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeE
Confidence            2334466788999888998777655 445 43  2222221   1 0                11122 23567999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      .......|.+-+..|+|.+|++...
T Consensus       250 ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  250 IDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             eccccceeeeeccCceEEEEEccCC
Confidence            9888889999999999999999873

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=89.07  E-value=17  Score=32.73  Aligned_cols=164  Identities=12%  Similarity=0.105  Sum_probs=87.5

Q ss_pred             CeEEEEECCCCcEEEEEee-------cCceeEEEEcCC------eE-EEE--EcCeEEEEEcCCceeeEEEeccCCCc--
Q 015198          114 TKVIIWDDHQSRCIGEFAF-------RSDVRSVKLSRD------RI-VVV--LEHKIYVYSFVDLKLLHQIETLANLR--  175 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~-------~~~i~~~~~~~~------~~-~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~--  175 (411)
                      -+|.+||+.+++.++.+..       .+.+..+.+...      +. ++.  ..+.|.++|+.+++.-+.+..+..+.  
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            5889999999999988873       345667777652      22 222  34689999999887765554322111  


Q ss_pred             -----------------ceEEEcc-CCCceEEEEecCCCCeE-EEE---EcCC---------cceEEEecc-ccceeEEE
Q 015198          176 -----------------GLCCLSH-HSSTSVLACPGLQRGQV-RIE---HFGL---------NMIKLINAH-DSHIACFT  223 (411)
Q Consensus       176 -----------------~~~~~~~-~~~~~~l~~~g~~dg~i-~i~---~~~~---------~~~~~~~~~-~~~i~~l~  223 (411)
                                       ..+++.+ +++++.|.+..-....+ +|-   ..+.         ..++.+ +. ......++
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~  192 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMA  192 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEE
Confidence                             1111211 22334444322111111 120   0010         112222 22 23566788


Q ss_pred             ecCCCCEEEEEcCCCeEEEEEECCCC---ceEEEE-eCCCCCcceEEEEeCC--CCCEEEEE
Q 015198          224 LTLDGLLLATASTRGTLIRIFNTVDG---TRLQEV-RRGVDRAEIYSIALSP--NVQWLAVA  279 (411)
Q Consensus       224 ~sp~g~~l~s~s~dg~~I~vwd~~~~---~~~~~~-~~~~~~~~v~~l~~sp--dg~~l~s~  279 (411)
                      ++++|.++++--..+. |..|+..+.   +....+ .....-..+..+.+.+  +|.+.+..
T Consensus       193 ~D~~G~ly~~~~~~~a-I~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  193 IDPNGNLYFTDVEQNA-IGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EETTTEEEEEECCCTE-EEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             ECCCCcEEEecCCCCe-EEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            9999998888888888 999998651   122222 2211134778899988  77655554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.98  E-value=16  Score=37.51  Aligned_cols=29  Identities=31%  Similarity=0.508  Sum_probs=24.4

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          263 EIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      .|..|.++|+|++|+..|..| |.|..+..
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~  114 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELPR  114 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEecc
Confidence            688999999999999998877 77777743

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=88.94  E-value=24  Score=34.41  Aligned_cols=237  Identities=11%  Similarity=0.064  Sum_probs=106.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      ....+|.++.+...|. +-+|++..+..||..+.+ .+..........|..+.-+-++...++..       .-+.+.+.
T Consensus       162 l~d~~V~aLv~D~~g~-lWvgT~dGL~~fd~~~gk-alql~s~~~dk~I~al~~d~qg~LWVGTd-------qGv~~~e~  232 (671)
T COG3292         162 LKDTPVVALVFDANGR-LWVGTPDGLSYFDAGRGK-ALQLASPPLDKAINALIADVQGRLWVGTD-------QGVYLQEA  232 (671)
T ss_pred             ccCccceeeeeeccCc-EEEecCCcceEEccccce-EEEcCCCcchhhHHHHHHHhcCcEEEEec-------cceEEEch
Confidence            3456788888888884 556675556667766533 33332212223344444444555544432       45666664


Q ss_pred             CCCcEEEEEe--ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeE-EEeccCCCcceEEEccCCCceEEEEecCCCC
Q 015198          122 HQSRCIGEFA--FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLH-QIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       122 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (411)
                      +..+......  ....|..+.-..+|.+-+ .++.+-.+......... ..+.+.....+..+..+.++.+-  .+..+|
T Consensus       233 ~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLW--v~t~~g  310 (671)
T COG3292         233 EGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLW--VGTYGG  310 (671)
T ss_pred             hhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEe--eeccCc
Confidence            4422111111  234454444444544444 33333333433322221 12223332344556666666655  355666


Q ss_pred             eEEEEEcCCcceEEEecccc-ceeEEEecC--CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC
Q 015198          198 QVRIEHFGLNMIKLINAHDS-HIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (411)
Q Consensus       198 ~i~i~~~~~~~~~~~~~~~~-~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (411)
                      .+++-...-.....+....+ .+-..+.+|  .+..+.-...-|. +.+-+-.+|..+.....- -...|+.+++..+|.
T Consensus       311 iv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~-L~van~stG~~v~sv~q~-Rg~nit~~~~d~~g~  388 (671)
T COG3292         311 IVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGE-LMVANGSTGELVRSVHQL-RGMNITTTLEDSRGR  388 (671)
T ss_pred             eEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccce-EEEecCCCCcEEEEeeec-cccccchhhhccCCc
Confidence            77763222222222221111 111111222  1111222222233 444444555555443321 223566667766554


Q ss_pred             EEEEEeCCCcEEEEEccc
Q 015198          275 WLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       275 ~l~s~s~dg~I~vwd~~~  292 (411)
                       +-.++..+-+..|+.++
T Consensus       389 -lWlgs~q~GLsrl~n~n  405 (671)
T COG3292         389 -LWLGSMQNGLSRLDNKN  405 (671)
T ss_pred             -EEEEecccchhhhccCC
Confidence             44455553366676665

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.99  E-value=6.6  Score=32.20  Aligned_cols=29  Identities=10%  Similarity=0.115  Sum_probs=22.8

Q ss_pred             ceEEEEEccC-------CEEEEEEeCCcEEEEEEec
Q 015198          361 THFIAAFGSQ-------NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       361 ~~~~~~~~~~-------~~~~~~~~dg~~~~~~~~~  389 (411)
                      .+..++|||.       -.|++.+.+|.|.+|.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            5667889984       4588888899999997663

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=87.93  E-value=6.3  Score=39.95  Aligned_cols=31  Identities=13%  Similarity=0.213  Sum_probs=25.9

Q ss_pred             cCceeEEEEcCCeEEEE-EcCeEEEEEcCCce
Q 015198          133 RSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK  163 (411)
Q Consensus       133 ~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~  163 (411)
                      ...|.+++.+.+..++. .+|.|+-|-++...
T Consensus       228 gh~~~qisvs~~HslvLT~~g~Vys~GlN~~h  259 (1267)
T KOG0783|consen  228 GHKVIQISVSHTHSLVLTKFGSVYSWGLNGSH  259 (1267)
T ss_pred             ccceEEEEeecceeEEEeecceEEEeecCccc
Confidence            56788999999998888 89999999886543

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=87.77  E-value=25  Score=33.54  Aligned_cols=30  Identities=20%  Similarity=0.482  Sum_probs=25.4

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          263 EIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      .|..++..+..+.|++...+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            499999999889999999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.16  E-value=40  Score=34.95  Aligned_cols=182  Identities=12%  Similarity=0.073  Sum_probs=99.5

Q ss_pred             CeEEEEECCCCcEEEEEeecCce---------eEEEEcC-----------------CeEEEE--EcCeEEEEEcCCceee
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDV---------RSVKLSR-----------------DRIVVV--LEHKIYVYSFVDLKLL  165 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i---------~~~~~~~-----------------~~~~~~--~dg~i~iwd~~~~~~~  165 (411)
                      +.|.-.|..+|+.+..+.....+         ..+.+..                 ++++++  .|+.++-.|.++|+.+
T Consensus       204 ~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~  283 (764)
T TIGR03074       204 NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLC  283 (764)
T ss_pred             CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEE
Confidence            88999999999999888743222         1222221                 123434  7999999999999988


Q ss_pred             EEEeccCC----------CcceEEEccCC---CceEEEEecC---------CCCeEEEEE-cCCcceEEEecc-------
Q 015198          166 HQIETLAN----------LRGLCCLSHHS---STSVLACPGL---------QRGQVRIEH-FGLNMIKLINAH-------  215 (411)
Q Consensus       166 ~~~~~~~~----------~~~~~~~~~~~---~~~~l~~~g~---------~dg~i~i~~-~~~~~~~~~~~~-------  215 (411)
                      ..+.....          +.........|   ++ .+++.++         -+|.|+-++ .+++.+-.+..-       
T Consensus       284 W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~  362 (764)
T TIGR03074       284 EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAP  362 (764)
T ss_pred             EEecCCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccC
Confidence            76532110          00000001111   22 2222211         146666633 444444333210       


Q ss_pred             ---------c-cce-eEEEecCCCCEEEEEc------------------CCCeEEEEEECCCCceEEEEeCCCCCc----
Q 015198          216 ---------D-SHI-ACFTLTLDGLLLATAS------------------TRGTLIRIFNTVDGTRLQEVRRGVDRA----  262 (411)
Q Consensus       216 ---------~-~~i-~~l~~sp~g~~l~s~s------------------~dg~~I~vwd~~~~~~~~~~~~~~~~~----  262 (411)
                               . ..+ ..++++++..+++.+.                  ..+. |.-.|.++|+.+-.++..+|.-    
T Consensus       363 ~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s-lvALD~~TGk~~W~~Q~~~hD~WD~D  441 (764)
T TIGR03074       363 PAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS-LVALDATTGKERWVFQTVHHDLWDMD  441 (764)
T ss_pred             CCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce-EEEEeCCCCceEEEecccCCcccccc
Confidence                     0 011 2345555554444322                  1234 7778899999888877533321    


Q ss_pred             ---ceEEEEeCC-CCC---EEEEEeCCCcEEEEEccccccCC
Q 015198          263 ---EIYSIALSP-NVQ---WLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       263 ---~v~~l~~sp-dg~---~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                         ...-+.+.. +|+   .++.++.+|.++++|-++|+..-
T Consensus       442 ~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       442 VPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             ccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence               111122322 563   78899999999999999998654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.87  E-value=28  Score=32.90  Aligned_cols=108  Identities=14%  Similarity=0.092  Sum_probs=59.4

Q ss_pred             EccCCCceEEEEecCCCCeEEE-EEcCCcc-eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc-----eE
Q 015198          180 LSHHSSTSVLACPGLQRGQVRI-EHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-----RL  252 (411)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-----~~  252 (411)
                      +...+++.++++ | ..|.+.. |+..... ...-......+..+.+.+++.+++++ ..|. + ++....++     ..
T Consensus       244 v~~~~dG~~~~v-g-~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l-~~S~d~G~~~~~~~f  318 (398)
T PLN00033        244 VNRSPDGDYVAV-S-SRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-L-YVSKGTGLTEEDFDF  318 (398)
T ss_pred             EEEcCCCCEEEE-E-CCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-E-EEecCCCCcccccce
Confidence            344556666655 3 4566665 4433321 11222335668899999999877665 4565 4 34444554     22


Q ss_pred             EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      ..+........+.++.|.+++..+ .++..|.+... .+.|+
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s-~D~G~  358 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRS-TDGGK  358 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEe-CCCCc
Confidence            333221122358899999887755 45567755443 34444

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=86.80  E-value=13  Score=28.86  Aligned_cols=112  Identities=10%  Similarity=0.050  Sum_probs=63.5

Q ss_pred             EEEEEcCCCCEEEEEe-CCcEEEEecCCCc--------ceEEeecCCCCEEEEEEecc--CCeEEEEecCCCCCCCCCeE
Q 015198           48 ISVSWNQDYGCFAAGT-SCGFRIYNCEPFK--------ETFRRDLKSGGFRIVEMLFR--CNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~-dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..-.|......|++++ .|.|.|++.....        .+....+...-..+.+-.+.  .+...|+-|+.      ..|
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~------t~l   75 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ------TSL   75 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc------ceE
Confidence            3456777777899888 9999999876322        22223332222222222333  23344444444      789


Q ss_pred             EEEECCCCcEEEEEeecCceeEEEEcC----CeEEEE--EcCeEEEEEcCCceee
Q 015198          117 IIWDDHQSRCIGEFAFRSDVRSVKLSR----DRIVVV--LEHKIYVYSFVDLKLL  165 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~--~dg~i~iwd~~~~~~~  165 (411)
                      ..||+..+..+..-.....|.++.+-.    +..+++  .+..|.-||.+..+..
T Consensus        76 laYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   76 LAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             EEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            999998887666555667777777632    222333  4555666665443433

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.72  E-value=18  Score=34.78  Aligned_cols=94  Identities=16%  Similarity=0.204  Sum_probs=58.6

Q ss_pred             ceeEEEecCCCCEEEEEcCCCeEEEEEEC----------CCCceEEEEe---------CCCCCcceEEEEeCCCC---CE
Q 015198          218 HIACFTLTLDGLLLATASTRGTLIRIFNT----------VDGTRLQEVR---------RGVDRAEIYSIALSPNV---QW  275 (411)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~----------~~~~~~~~~~---------~~~~~~~v~~l~~spdg---~~  275 (411)
                      .|..+..++.|..++-++.+|. + |..+          ++|+.....+         .....-.+..++|+|+.   ..
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi-~-vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGL-M-VMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCCceEEEecCCee-E-EEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            4677888999998888888885 3 3333          2343221111         11011256778999976   57


Q ss_pred             EEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCC
Q 015198          276 LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHS  316 (411)
Q Consensus       276 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (411)
                      |..-+.|+.|++||+......-....+   +.|+---.+|+
T Consensus       183 L~iL~sdnviRiy~lS~~telylqpge---pgRS~tn~Si~  220 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTELYLQPGE---PGRSPTNVSIL  220 (741)
T ss_pred             EEEEecCcEEEEEecCCcchhhccCCC---cCCCCccceee
Confidence            788889999999999987665333332   44544445555

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=86.02  E-value=26  Score=31.68  Aligned_cols=72  Identities=18%  Similarity=0.272  Sum_probs=53.4

Q ss_pred             ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCc----ceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          218 HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA----EIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~----~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      -|++|...++|.+|+++-.-.. |.+.|-++|+.+..+.+.. .+    .-...+|-.|-+++-.+..++.|.|||=.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~~-~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGKR-NSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             EeeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCCC-CCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            4677788899999999988888 9999999999998887631 11    11124454566666666788899999973

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=85.97  E-value=13  Score=32.30  Aligned_cols=139  Identities=12%  Similarity=0.037  Sum_probs=73.9

Q ss_pred             EEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe--EEEEEcCC---cce-EEE---eccccceeEEEe
Q 015198          154 IYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGL---NMI-KLI---NAHDSHIACFTL  224 (411)
Q Consensus       154 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--i~i~~~~~---~~~-~~~---~~~~~~i~~l~~  224 (411)
                      -.+||+.+++.. .+....+ ..+..-.+-++|.+|.+.|..+|.  ++++....   .+- ...   .....+-.....
T Consensus        48 s~~yD~~tn~~r-pl~v~td-~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~  125 (243)
T PF07250_consen   48 SVEYDPNTNTFR-PLTVQTD-TFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT  125 (243)
T ss_pred             EEEEecCCCcEE-eccCCCC-CcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence            357888776543 3333222 234444566788888876665544  55533222   110 000   112233334555


Q ss_pred             cCCCCEEEEEcCCCeEEEEEECCC-CceEEEE--eC----CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          225 TLDGLLLATASTRGTLIRIFNTVD-GTRLQEV--RR----GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       225 sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~~~--~~----~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      -|||+.|+.|+.......+|.-.. ......+  ..    .....---.+...|||++++.+..+.  .|||..+++..
T Consensus       126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~  202 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVV  202 (243)
T ss_pred             CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEE
Confidence            689999999888765356665422 1111111  11    00111222456679999998887665  67788887653

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=85.97  E-value=36  Score=33.26  Aligned_cols=130  Identities=11%  Similarity=0.170  Sum_probs=74.8

Q ss_pred             CeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE--EcCeEEEEEcCC-ceeeEEEeccCCCcceEEEccCCCceE
Q 015198          114 TKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                      +.+.+-+-.+|..+....  -...|+.+++..++..-+  ..+-+..|+.++ +..+....+. ....++++-.++++.+
T Consensus       354 g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dnsL  432 (671)
T COG3292         354 GELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNSL  432 (671)
T ss_pred             ceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCCE
Confidence            555666666676666543  345677777776665554  344566666555 2222222222 1235678888888885


Q ss_pred             EEEecCCCCeEEEEEcCCcceEEEe--c---cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC
Q 015198          189 LACPGLQRGQVRIEHFGLNMIKLIN--A---HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~~~~~~~~--~---~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (411)
                      .+  |..+|.++......+....+.  .   ..+.+..+.+.|+|++-+. +.+|  |..|+-+..
T Consensus       433 WI--GTs~Glvk~~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a-~g~g--va~~~sq~~  493 (671)
T COG3292         433 WI--GTSGGLVKRDPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLA-AGSG--VAAWESQRR  493 (671)
T ss_pred             EE--eccCCeEecCccccchhcccccccCcCCcchhhhhccCCCCceEEE-ecce--eeeeccccc
Confidence            53  668888887544433332221  2   2345778889999985333 3333  778875443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=85.96  E-value=0.11  Score=48.46  Aligned_cols=141  Identities=19%  Similarity=0.207  Sum_probs=88.9

Q ss_pred             EEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCce
Q 015198           88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK  163 (411)
Q Consensus        88 ~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~  163 (411)
                      ...+...|.+++.-++.+..+     ..+..|| +.++.+.....++....++|..++..++    ..+.+++||+.+..
T Consensus        35 v~pi~~~w~~e~~nlavaca~-----tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey  108 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACAN-----TIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY  108 (615)
T ss_pred             cccceeeEecCCCceehhhhh-----hHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence            344455566655445544444     7788888 6777777777788888899998876665    78999999996532


Q ss_pred             eeEEEec-cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEec-cccceeEEEecCCCCEEEEEcCCCe
Q 015198          164 LLHQIET-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA-HDSHIACFTLTLDGLLLATASTRGT  239 (411)
Q Consensus       164 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~  239 (411)
                      . ++++. .......  +.|++....++. |...|.+.|+...........+ |...++++++.+.+. .+.++.|..
T Consensus       109 t-qqLE~gg~~s~sl--l~wsKg~~el~i-g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~  181 (615)
T KOG2247|consen  109 T-QQLESGGTSSKSL--LAWSKGTPELVI-GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT  181 (615)
T ss_pred             H-HHHhccCcchHHH--HhhccCCccccc-cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence            2 22221 1111122  455555555554 5678888886655433333344 899999999998874 444555544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.57  E-value=8.3  Score=31.63  Aligned_cols=31  Identities=19%  Similarity=0.402  Sum_probs=25.2

Q ss_pred             cceeEEEecCCC------CEEEEEcCCCeEEEEEECCC
Q 015198          217 SHIACFTLTLDG------LLLATASTRGTLIRIFNTVD  248 (411)
Q Consensus       217 ~~i~~l~~sp~g------~~l~s~s~dg~~I~vwd~~~  248 (411)
                      ..+..++|||.|      -+|++.+.++. |.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecCC
Confidence            378899999965      37889999999 99997553

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.11  E-value=22  Score=37.98  Aligned_cols=73  Identities=8%  Similarity=-0.023  Sum_probs=43.9

Q ss_pred             ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      -+..++.+..+......+ .+...+. +-+|+.........+..       ....++.++..++++-.||.+.+||+..+
T Consensus       196 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g  266 (993)
T KOG1983|consen  196 LIEYESLQVLYYSPTKIL-IGFNRGL-VVIKDRASKYVQSAYLP-------NGQLESRDGSHFVSYHTDGSYAFWDVSSG  266 (993)
T ss_pred             ccccccceeeeecCCCcc-eeeeeee-eeehhcccccchhhccc-------ccccCccCCceEEEEEecCCEEeeecCCC
Confidence            344555555554444332 3344455 66676544333333332       11112889999999999999999999998


Q ss_pred             cc
Q 015198          294 VV  295 (411)
Q Consensus       294 ~~  295 (411)
                      ..
T Consensus       267 ~~  268 (993)
T KOG1983|consen  267 KL  268 (993)
T ss_pred             ce
Confidence            54

>PRK13684 Ycf48-like protein; Provisional

Probab=85.00  E-value=32  Score=31.73  Aligned_cols=150  Identities=13%  Similarity=0.102  Sum_probs=79.4

Q ss_pred             cCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEE-EcCCcce
Q 015198          133 RSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE-HFGLNMI  209 (411)
Q Consensus       133 ~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~-~~~~~~~  209 (411)
                      ...+.++.+.+++.+++  ..|.++.-.-..++.-..+... .......+...+++..+++ | ..|.+++- ...+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~-~~~~l~~i~~~~~g~~~~v-g-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRN-SSRRLQSMGFQPDGNLWML-A-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCC-CcccceeeeEcCCCCEEEE-e-cCCEEEEccCCCCCcc
Confidence            45788899999988777  4555543211222222222221 1123445555555555554 4 56777652 2222221


Q ss_pred             EEEec----cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC-CCCCcceEEEEeCCCCCEEEEEeCCCc
Q 015198          210 KLINA----HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKGT  284 (411)
Q Consensus       210 ~~~~~----~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~  284 (411)
                      .....    ....+..+.+.+++..++ ++.+|. |. .....|+.-..... ..-....+.+.|..+++.++ .+..|.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~-v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~  324 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGT-LL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGV  324 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCe-EE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCce
Confidence            21111    224577889999887655 445665 43 44455554433321 11223577888876666554 567787


Q ss_pred             EEEEE
Q 015198          285 VHIFS  289 (411)
Q Consensus       285 I~vwd  289 (411)
                      |.-|+
T Consensus       325 il~~~  329 (334)
T PRK13684        325 LLRYV  329 (334)
T ss_pred             EEEec
Confidence            76664

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=84.88  E-value=40  Score=32.85  Aligned_cols=188  Identities=10%  Similarity=0.035  Sum_probs=89.0

Q ss_pred             CCeEEEEec---CCCCCCCCCeEEEEECCCCcEEEEEeec-CceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEecc
Q 015198           97 CNILALVGA---GDNSQYPPTKVIIWDDHQSRCIGEFAFR-SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETL  171 (411)
Q Consensus        97 ~~~~~l~s~---~~d~~~~d~~i~vwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~  171 (411)
                      .++.+++..   ...     ....+.| ..|..+..+... .....+...++|.+++ ....++.+|+- |+.+..+...
T Consensus       113 ~~gl~~~~~~~~~~~-----~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~~-G~v~~~~~l~  185 (477)
T PF05935_consen  113 EDGLYFVNGNDWDSS-----SYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDLL-GKVIWEYDLP  185 (477)
T ss_dssp             TT-EEEEEETT--BE-----EEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-TT---EEEEEE--
T ss_pred             CCcEEEEeCCCCCCC-----ceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcCC-CCEEEeeecC
Confidence            466777776   222     6788888 677777766632 2222267788998888 67888888874 6666665443


Q ss_pred             CCC-cceEEEccCCCceEEEEecC-------------CCCeEEEEEcCCcceEEEec--c--------------------
Q 015198          172 ANL-RGLCCLSHHSSTSVLACPGL-------------QRGQVRIEHFGLNMIKLINA--H--------------------  215 (411)
Q Consensus       172 ~~~-~~~~~~~~~~~~~~l~~~g~-------------~dg~i~i~~~~~~~~~~~~~--~--------------------  215 (411)
                      ... ..--.+.+.++|.+|+.+..             .|..+.|+ ..++.+..+..  |                    
T Consensus       186 ~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~  264 (477)
T PF05935_consen  186 GGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGS  264 (477)
T ss_dssp             TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-S
T ss_pred             CcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccC
Confidence            321 01122334455555554330             23333333 44443333210  0                    


Q ss_pred             -----ccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC-----cceEE---------------EEe
Q 015198          216 -----DSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-----AEIYS---------------IAL  269 (411)
Q Consensus       216 -----~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-----~~v~~---------------l~~  269 (411)
                           -..++++.+.+ ++.+|+++-.... |...|.++++....+-.+..-     ..+..               ..|
T Consensus       265 ~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~-V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~  343 (477)
T PF05935_consen  265 GGGRDWLHINSIDYDPSDDSIIVSSRHQSA-VIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDW  343 (477)
T ss_dssp             STTSBS--EEEEEEETTTTEEEEEETTT-E-EEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS---
T ss_pred             CCCCCccccCccEEeCCCCeEEEEcCcceE-EEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcc
Confidence                 02478899988 5555555555556 889998888887776542100     00100               111


Q ss_pred             CCCCCEEEEEeCCC---cEEEEEccccc
Q 015198          270 SPNVQWLAVASDKG---TVHIFSLRVRV  294 (411)
Q Consensus       270 spdg~~l~s~s~dg---~I~vwd~~~~~  294 (411)
                       +-|++-+.--.+|   .|.|||=..+.
T Consensus       344 -~~gQH~~~~~~~g~~~~l~vFDNg~~r  370 (477)
T PF05935_consen  344 -FWGQHTAHLIPDGPQGNLLVFDNGNGR  370 (477)
T ss_dssp             --SS-EEEEE-TTS---SEEEEE--TTG
T ss_pred             -cccccceEEcCCCCeEEEEEEECCCCC
Confidence             2355666666777   89999977655

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=84.34  E-value=15  Score=34.91  Aligned_cols=37  Identities=8%  Similarity=-0.227  Sum_probs=31.3

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF   75 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~   75 (411)
                      .+.+....+.++..+|++++.|+.. -|.|.|+|+...
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~  339 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG  339 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            4566778899999999999888877 799999999864

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=83.98  E-value=18  Score=28.07  Aligned_cols=70  Identities=16%  Similarity=0.117  Sum_probs=45.0

Q ss_pred             EEecCCCCEEEEEcCCCeEEEEEECCCC--------ceEEEEeCCCCCcceEEEEeCC-----CCCEEEEEeCCCcEEEE
Q 015198          222 FTLTLDGLLLATASTRGTLIRIFNTVDG--------TRLQEVRRGVDRAEIYSIALSP-----NVQWLAVASDKGTVHIF  288 (411)
Q Consensus       222 l~~sp~g~~l~s~s~dg~~I~vwd~~~~--------~~~~~~~~~~~~~~v~~l~~sp-----dg~~l~s~s~dg~I~vw  288 (411)
                      -.|......|+.++.-|+ |.|++....        ..+..+.   -...|++|+-.+     +...|+.|+.. .|..|
T Consensus         4 GkfDG~~pcL~~aT~~gK-V~IH~ph~~~~~~~~~~~~i~~LN---in~~italaaG~l~~~~~~D~LliGt~t-~llaY   78 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGK-VFIHNPHERGQRTGRQDSDISFLN---INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAY   78 (136)
T ss_pred             EEeCCCceeEEEEecCCE-EEEECCCccccccccccCceeEEE---CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEE
Confidence            345555567888888888 999986532        2344444   334566665433     34467776655 59999


Q ss_pred             EccccccC
Q 015198          289 SLRVRVVG  296 (411)
Q Consensus       289 d~~~~~~~  296 (411)
                      |+......
T Consensus        79 DV~~N~d~   86 (136)
T PF14781_consen   79 DVENNSDL   86 (136)
T ss_pred             EcccCchh
Confidence            99988643

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=83.79  E-value=16  Score=36.82  Aligned_cols=32  Identities=9%  Similarity=0.144  Sum_probs=27.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCC
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP   74 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~   74 (411)
                      ...-++++.-+|.|+-++.+. ||.|++|+..+
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~   45 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP   45 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence            345678888899999999999 99999999865

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.59  E-value=4.1  Score=40.50  Aligned_cols=33  Identities=27%  Similarity=0.283  Sum_probs=26.2

Q ss_pred             ceEEEEeCC----CCCEEEEEeCCCcEEEEEcccccc
Q 015198          263 EIYSIALSP----NVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       263 ~v~~l~~sp----dg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      .+..++++.    +..+|++.+.|+++++||+.++++
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            455566666    678999999999999999999998

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.33  E-value=27  Score=29.60  Aligned_cols=50  Identities=12%  Similarity=0.177  Sum_probs=36.6

Q ss_pred             CEEEEEcCCCeEEEEEECC--CCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198          229 LLLATASTRGTLIRIFNTV--DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK  282 (411)
Q Consensus       229 ~~l~s~s~dg~~I~vwd~~--~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d  282 (411)
                      ..|+.+..... |.+|++.  ..+.+.+|..   -+.|..+.++..|++|++--.+
T Consensus        29 d~Lfva~~g~~-Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   29 DALFVAASGCK-VEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             ceEEEEcCCCE-EEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEee
Confidence            34444455566 9999987  3456667764   4689999999999999986544

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=82.80  E-value=42  Score=31.39  Aligned_cols=194  Identities=14%  Similarity=0.049  Sum_probs=98.5

Q ss_pred             cCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee
Q 015198           53 NQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF  132 (411)
Q Consensus        53 s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~  132 (411)
                      .-+++.++...+|.|.-.|.++...+....+......+..-....++.++++...      +.+..+|..+|+.+.....
T Consensus        66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~------g~~y~ld~~~G~~~W~~~~  139 (370)
T COG1520          66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD------GKLYALDASTGTLVWSRNV  139 (370)
T ss_pred             eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc------ceEEEEECCCCcEEEEEec
Confidence            3345444443477777777776655544333110111111122226666665443      8899999889999988885


Q ss_pred             cC--ceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCC-CcceEEEcc-CCCceEEEEecCC--CCeEEE-EE
Q 015198          133 RS--DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLAN-LRGLCCLSH-HSSTSVLACPGLQ--RGQVRI-EH  203 (411)
Q Consensus       133 ~~--~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~g~~--dg~i~i-~~  203 (411)
                      ..  .+..-.+-.++....  .++.++..|..+|+....+..... ..... ..+ ..++ .+.. +..  ++.+.- ..
T Consensus       140 ~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~-~~~~~~~~-~vy~-~~~~~~~~~~a~~~  216 (370)
T COG1520         140 GGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIY-GSPAIASG-TVYV-GSDGYDGILYALNA  216 (370)
T ss_pred             CCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccc-cCceeecc-eEEE-ecCCCcceEEEEEc
Confidence            54  222333344555555  378999999888888777654321 11111 111 1122 2222 323  332322 22


Q ss_pred             cCCcceEEEecc----ccceeEE-Ee-----cCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          204 FGLNMIKLINAH----DSHIACF-TL-----TLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       204 ~~~~~~~~~~~~----~~~i~~l-~~-----sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      .++......+.+    ...+... .+     .-++ -+..++.++. +...|..+|+.+..+..
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~-~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGK-LLCLDADTGELIWSFPA  278 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEECC-cEEEEecCCe-EEEEEcCCCceEEEEec
Confidence            244333332111    0001000 11     1122 2356677787 88889999998888775

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=82.54  E-value=0.21  Score=46.75  Aligned_cols=139  Identities=11%  Similarity=0.109  Sum_probs=89.9

Q ss_pred             EEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEecc-
Q 015198          140 KLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH-  215 (411)
Q Consensus       140 ~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~-  215 (411)
                      .|-+.+..++   .+..+..|| +.++....+..   +...+.+.++-++..++...-..+.+++|+.+.+..+++... 
T Consensus        41 ~w~~e~~nlavaca~tiv~~YD-~agq~~le~n~---tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   41 RWRPEGHNLAVACANTIVIYYD-KAGQVILELNP---TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             eEecCCCceehhhhhhHHHhhh-hhcceecccCC---chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            3444443343   566677777 33444433322   225567777777777766666889999999887665555321 


Q ss_pred             ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEE
Q 015198          216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVH  286 (411)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~  286 (411)
                      ...-.-+.|++.+..++.+...|. +.|++..+.+.+...-  .|...++++++.+.+. .+.++.|..+.
T Consensus       117 ~~s~sll~wsKg~~el~ig~~~gn-~viynhgtsR~iiv~G--kh~RRgtq~av~lEd~-vil~dcd~~L~  183 (615)
T KOG2247|consen  117 TSSKSLLAWSKGTPELVIGNNAGN-IVIYNHGTSRRIIVMG--KHQRRGTQIAVTLEDY-VILCDCDNTLS  183 (615)
T ss_pred             cchHHHHhhccCCccccccccccc-eEEEeccchhhhhhhc--ccccceeEEEecccce-eeecCcHHHHH
Confidence            111222678999999999999999 9999977766553333  2777899999998765 44555554443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=82.16  E-value=44  Score=31.24  Aligned_cols=149  Identities=12%  Similarity=0.033  Sum_probs=71.6

Q ss_pred             EEEEEeccCCeEEEEecCCCC------CCCCC-eEEEEECCC--CcE--EEEEe-ecCceeEEEEcCCeEEEEEcCeEEE
Q 015198           89 RIVEMLFRCNILALVGAGDNS------QYPPT-KVIIWDDHQ--SRC--IGEFA-FRSDVRSVKLSRDRIVVVLEHKIYV  156 (411)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~------~~~d~-~i~vwd~~~--~~~--~~~~~-~~~~i~~~~~~~~~~~~~~dg~i~i  156 (411)
                      ....+.+.+++.++++...+-      ....+ .|.+++..+  |+.  ...+. .-.....+++.+++.+++....|..
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~~   94 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDILF   94 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEEE
Confidence            345667777777766642110      00113 677776433  332  22332 2345678999999955555555655


Q ss_pred             E-EcCC-c----eeeEEEeccCC-----CcceEEEccCCCceEEEEecCCC------------------CeEEEEEcCCc
Q 015198          157 Y-SFVD-L----KLLHQIETLAN-----LRGLCCLSHHSSTSVLACPGLQR------------------GQVRIEHFGLN  207 (411)
Q Consensus       157 w-d~~~-~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~g~~d------------------g~i~i~~~~~~  207 (411)
                      | |... +    +....+..-..     ......+.+.+++.+.++.|+..                  |.|.-.+..+.
T Consensus        95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~  174 (367)
T TIGR02604        95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG  174 (367)
T ss_pred             EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence            5 4321 1    21111211111     11233455666766665555321                  22222333333


Q ss_pred             ceEEEeccccceeEEEecCCCCEEEEEcCC
Q 015198          208 MIKLINAHDSHIACFTLTLDGLLLATASTR  237 (411)
Q Consensus       208 ~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d  237 (411)
                      ....+...-.....++|+++|+++++-..+
T Consensus       175 ~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       175 KLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             eEEEEecCcCCCccceECCCCCEEEEccCC
Confidence            333333223334678899988877664433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=82.07  E-value=44  Score=31.23  Aligned_cols=154  Identities=19%  Similarity=0.277  Sum_probs=86.7

Q ss_pred             eEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEec----CCCCE--EEEEcC-C---CeEEEEEECC--CCceEEE
Q 015198          187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLT----LDGLL--LATAST-R---GTLIRIFNTV--DGTRLQE  254 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~s----p~g~~--l~s~s~-d---g~~I~vwd~~--~~~~~~~  254 (411)
                      .+++. ...++-+.+++.+++.++.+..  +.++.+..-    -+|+.  |+.++. +   .. |++|.+.  ++ .+..
T Consensus        69 SlIig-TdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~-l~~f~id~~~g-~L~~  143 (381)
T PF02333_consen   69 SLIIG-TDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNS-LRLFRIDPDTG-ELTD  143 (381)
T ss_dssp             -EEEE-EETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-E-EEEEEEETTTT-EEEE
T ss_pred             ceEEE-EeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCe-EEEEEecCCCC-cceE
Confidence            34443 4577889999999999888753  334443332    13442  444443 2   45 9999775  33 3334


Q ss_pred             EeCCC-----CCcceEEEEeC--C-CCC-EEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCC
Q 015198          255 VRRGV-----DRAEIYSIALS--P-NVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISP  325 (411)
Q Consensus       255 ~~~~~-----~~~~v~~l~~s--p-dg~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (411)
                      +....     ....++.+|+-  + +|. +.++...+|.+..|.+.......                            
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~----------------------------  195 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK----------------------------  195 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS----------------------------
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc----------------------------
Confidence            33211     12346777764  3 455 55677889999999997543221                            


Q ss_pred             CCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEecCCCCc
Q 015198          326 STGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGE  394 (411)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~  394 (411)
                                     +      .-..+.+|+++.....+++-...+.|+++=++--|+.|..+++.+..
T Consensus       196 ---------------v------~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~  243 (381)
T PF02333_consen  196 ---------------V------SATLVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGND  243 (381)
T ss_dssp             ---------------E------EEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S-
T ss_pred             ---------------E------eeEEEEEecCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCc
Confidence                           0      01124578888866666655666999998888878888877765543

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=81.59  E-value=15  Score=26.35  Aligned_cols=42  Identities=17%  Similarity=0.179  Sum_probs=27.5

Q ss_pred             cCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEe
Q 015198          235 STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS  280 (411)
Q Consensus       235 s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  280 (411)
                      ..+|. +.-||..+++....+.+   -.-.+.+++++|+.+|+.+-
T Consensus        34 ~~~GR-ll~ydp~t~~~~vl~~~---L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   34 RPTGR-LLRYDPSTKETTVLLDG---LYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             ---EE-EEEEETTTTEEEEEEEE---ESSEEEEEE-TTSSEEEEEE
T ss_pred             CCCcC-EEEEECCCCeEEEehhC---CCccCeEEEcCCCCEEEEEe
Confidence            44677 88999988876444443   22578999999999776653

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=80.22  E-value=8.9  Score=22.38  Aligned_cols=29  Identities=10%  Similarity=-0.097  Sum_probs=21.0

Q ss_pred             CCCCEEEEEe--CCcEEEEecCCCcceEEee
Q 015198           54 QDYGCFAAGT--SCGFRIYNCEPFKETFRRD   82 (411)
Q Consensus        54 ~~g~~la~g~--dg~i~iw~~~~~~~~~~~~   82 (411)
                      |++++|.++.  ++.|.++|..+........
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            6788777766  8999999987755444433

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=80.19  E-value=6.3  Score=22.80  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=19.7

Q ss_pred             EeccccceeEEEecCCCCEEEEEcC-C--CeEEEEE
Q 015198          212 INAHDSHIACFTLTLDGLLLATAST-R--GTLIRIF  244 (411)
Q Consensus       212 ~~~~~~~i~~l~~sp~g~~l~s~s~-d--g~~I~vw  244 (411)
                      +...........|+|||+.|+-.+. +  |. -.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence            3344556678899999998776554 3  44 5554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	411
4av8_A	339	Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length		1e-18
3vu4_A	355	Crystal Structure Of Kluyvelomyces Marxianus Hsv2 L		1e-15

>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length = 339

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 110/251 (43%), Gaps = 21/251 (8%)
Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           ++   +NQD  C    T   F IYN  P K    +++   G   + ML R N +A V   
Sbjct: 17  IVDYEFNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAG--TIRMLHRTNYIAFVSTK 74
Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDL--KL 164
               +      IWDD + + I      + V+ + LSR+ IVV     I ++ F +   K+
Sbjct: 75  KELLH------IWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNPWNKI 128
Query: 165 LHQIE-----TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHI 219
              I+       AN  GL   S+  +   +    LQ    ++   G+    L+ AH + +
Sbjct: 129 TEDIKFGGVCEFAN--GLLVYSNEFNLGQIHVTRLQTDAEQVVGKGV----LVKAHANPV 182
Query: 220 ACFXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279
                             GTLIR+F T +G  ++E RRG+DR  I  +  SP+   LAV 
Sbjct: 183 KMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLAVV 242
Query: 280 SDKGTVHIFSL 290
           SDK T+H+F +
Sbjct: 243 SDKWTLHVFEV 253

>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2 Length = 355

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 104/252 (41%), Gaps = 24/252 (9%)
Query: 53  NQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112
           NQD  C    T   F IYN  P      ++++      V ML R N +A V         
Sbjct: 28  NQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH--LSKVRMLHRTNYVAFVTG------V 79
Query: 113 PTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSF-------VDLKLL 165
              V IWDD + + +      + V+ + LSR+ IVV     I V+ F        D    
Sbjct: 80  KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRF 139
Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQR-GQVRIEHFGLNMIK------LINAHDSH 218
             +   +N  GL   S+  +   +    LQ  G    +  G+          LI AH + 
Sbjct: 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP 197
Query: 219 IACFXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278
           I                  GT+IR+F T DG  ++E RRG+DRA++  +  S +   LAV
Sbjct: 198 IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAV 257
Query: 279 ASDKGTVHIFSL 290
            SDK T+H+F +
Sbjct: 258 VSDKWTLHVFEI 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	411
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.98
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.81
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.73
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.73
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.65
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.63
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.62
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.6
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.6
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.55
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.54
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.54
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.54
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.54
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.52
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.45
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.42
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.42
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.42
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.42
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.4
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.37
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.37
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.33
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.31
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.31
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.3
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.3
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.27
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.2
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.19
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.19
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.18
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.16
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.14
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.13
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.13
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.11
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.11
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.03
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.03
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.96
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.93
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.93
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.9
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.9
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.9
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.9
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.87
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.87
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.85
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.84
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.81
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.81
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.8
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.8
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.8
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.8
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.79
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.77
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.76
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.71
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.71
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.69
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.62
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.61
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.61
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.6
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.57
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.54
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.52
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.49
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.49
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.45
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.45
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.43
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.42
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.42
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.4
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.39
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.38
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.36
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.29
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.26
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.26
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.23
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.23
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.18
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.17
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.15
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.1
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.09
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.08
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.06
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.02
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.02
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.99
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.99
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.97
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.93
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.9
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.78
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.69
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.69
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.68
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.68
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.6
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.53
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.5
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.4
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.37
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.34
3ott_A	758	Two-component system sensor histidine kinase; beta	97.29
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.26
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.25
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.2
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.09
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.99
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.92
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.91
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.83
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.81
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.74
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.58
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.5
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.48
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.4
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.36
3ott_A	758	Two-component system sensor histidine kinase; beta	96.2
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.13
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.07
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.86
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.54
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.46
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.45
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.44
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.3
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.02
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.69
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.94
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.65
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.59
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.24
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.24
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.21
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.67
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.86
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.68
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.56
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.12
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.97
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	86.88
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	86.53
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	83.47
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	83.32
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	82.34
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	81.36
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	81.19

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=304.57  Aligned_cols=284  Identities=14%  Similarity=0.222  Sum_probs=244.5

Q ss_pred             cccCCCCCCeEEEEEcCC----CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQD----YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~----g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      ....+|.+.|++++|+|+    +.+|++|+ |+.|+||++..........+.+|...+.++.+++++..+++++.|    
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D----  101 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD----  101 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC----
Confidence            456789999999999985    67899999 999999999875554555567888999999999999999999988    


Q ss_pred             CCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198          113 PTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                       +.|++||+.+++.+..+. +...+.+++|+|++.+++   .|+.|++||+++++....+..+..  .+.++.+++++.+
T Consensus       102 -~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~  178 (321)
T 3ow8_A          102 -AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSPDGKY  178 (321)
T ss_dssp             -SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECTTSSE
T ss_pred             -CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECCCCCE
Confidence             999999999999998887 788899999999999888   689999999999998888887766  4556666677788


Q ss_pred             EEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198          189 LACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (411)
                      |++ |+.||.|++|+.. ++.+..+.+|..+|.+++|+|++++|++++.|+. |++||+++++.+..+.+  |...|.++
T Consensus       179 las-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~  254 (321)
T 3ow8_A          179 LAS-GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSG--HASWVLNV  254 (321)
T ss_dssp             EEE-EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECC--CSSCEEEE
T ss_pred             EEE-EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcC--CCCceEEE
Confidence            876 6689999999875 4667788999999999999999999999999999 99999999999989888  88899999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccc
Q 015198          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (411)
                      +|+|++++|++++.|++|+|||++++++..                                                  
T Consensus       255 ~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~--------------------------------------------------  284 (321)
T 3ow8_A          255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVH--------------------------------------------------  284 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEE--------------------------------------------------
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCEEEE--------------------------------------------------
Confidence            999999999999999999999999887543                                                  


Q ss_pred             cccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198          348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~  388 (411)
                            ++.-+.+.+..++|+++ ..|++++.||.|++|+++
T Consensus       285 ------~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          285 ------TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ------EECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ------EEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence                  22223346677899998 789999999999999864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.9e-40  Score=311.25  Aligned_cols=281  Identities=12%  Similarity=0.175  Sum_probs=244.6

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+|.++|++++|+|++++|++|+ |+.|+|||+.+.+....  +.+|...+.++.|++++.++++++.|     +.|
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~D-----~~i  174 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSAD-----MTI  174 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCC
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--EeccCCcEEEEEEcCCCCEEEEEeCC-----CeE
Confidence            45679999999999999999999999 99999999998665443  44788889999999999999999988     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      ++||+.+++++..+. |...|.+++|+|++.+++   .|+.|++||+++++++..+..|...  +.++.+++++.+|++ 
T Consensus       175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~--v~~~~~~~~g~~l~s-  251 (410)
T 1vyh_C          175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW--VRMVRPNQDGTLIAS-  251 (410)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECTTSSEEEE-
T ss_pred             EEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc--EEEEEECCCCCEEEE-
Confidence            999999999998887 899999999999998777   6999999999999999999988774  455566667777775 


Q ss_pred             cCCCCeEEEEEcCC-cceEEEeccccceeEEEecCC--------------------CCEEEEEcCCCeEEEEEECCCCce
Q 015198          193 GLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLD--------------------GLLLATASTRGTLIRIFNTVDGTR  251 (411)
Q Consensus       193 g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~--------------------g~~l~s~s~dg~~I~vwd~~~~~~  251 (411)
                      |+.|+.|++|+... .....+..|...|.+++|+|+                    |.+|++|+.|+. |++||++++++
T Consensus       252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~~~  330 (410)
T 1vyh_C          252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMC  330 (410)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEE
T ss_pred             EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCCce
Confidence            66899999998754 566778899999999999996                    679999999999 99999999999


Q ss_pred             EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCC
Q 015198          252 LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP  331 (411)
Q Consensus       252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (411)
                      +..+.+  |...|.+++|+|+|++|++++.||.|++||+.+++...                                  
T Consensus       331 ~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~----------------------------------  374 (410)
T 1vyh_C          331 LMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK----------------------------------  374 (410)
T ss_dssp             EEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE----------------------------------
T ss_pred             EEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE----------------------------------
Confidence            999988  88899999999999999999999999999998776542                                  


Q ss_pred             CCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEE
Q 015198          332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (411)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~  387 (411)
                                            .+..+...+..++|+++ ..|++++.||.|.+|.+
T Consensus       375 ----------------------~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          375 ----------------------TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ----------------------EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             ----------------------EEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence                                  33444456778999998 67888899999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1e-38  Score=294.64  Aligned_cols=285  Identities=11%  Similarity=0.064  Sum_probs=239.6

Q ss_pred             CCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        35 ~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      .....+.+|.+.|++++|+|++++|++|+ |+.|+|||+.+........  .+...+..+.|+|++.++++++.|     
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d-----  118 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP--LRSSWVMTCAYAPSGNYVACGGLD-----  118 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSSCEEEEEECTTSSEEEEEETT-----
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee--cCCccEEEEEECCCCCEEEEEeCC-----
Confidence            34456789999999999999999999999 9999999998866555443  567778899999999999999988     


Q ss_pred             CeEEEEECCCCc----EEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          114 TKVIIWDDHQSR----CIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       114 ~~i~vwd~~~~~----~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                      +.|++|++.+++    ....+. |...|.++.|++++.++.  .|+.|++||+++++.+..+..|...+  .++.+++++
T Consensus       119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v--~~~~~~~~~  196 (340)
T 1got_B          119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV--MSLSLAPDT  196 (340)
T ss_dssp             CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEECTTS
T ss_pred             CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCce--EEEEECCCC
Confidence            999999987753    344455 889999999999988766  79999999999999999998888754  455555666


Q ss_pred             eEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          187 SVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                      .++++ |+.|+.|++|+.. +.....+.+|...|.+++|+|++++|++++.|+. |++||+++++.+..+....+...|.
T Consensus       197 ~~l~s-g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~  274 (340)
T 1got_B          197 RLFVS-GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             SEEEE-EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             CEEEE-EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceE
Confidence            77765 6689999999975 4567788999999999999999999999999999 9999999998887776433445799


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcc
Q 015198          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKY  345 (411)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (411)
                      +++|+|+|++|++|+.||.|++||+.+++...                                                
T Consensus       275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~------------------------------------------------  306 (340)
T 1got_B          275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAG------------------------------------------------  306 (340)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEE------------------------------------------------
T ss_pred             EEEECCCCCEEEEECCCCeEEEEEcccCcEee------------------------------------------------
Confidence            99999999999999999999999998776432                                                


Q ss_pred             cccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198          346 FSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (411)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~  386 (411)
                              .+.-+.+.+..++|+++ ..|++++.||.|++|+
T Consensus       307 --------~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          307 --------VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --------EeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence                    33334456778899998 6788888999999994

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2e-38  Score=294.44  Aligned_cols=306  Identities=29%  Similarity=0.387  Sum_probs=246.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ....|.+.|++++|+|||++|++|++..++||++++........+  +...++.+.+..+..++++++ +     +.|++
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-d-----~~v~i   85 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV-K-----EVVHI   85 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS-T-----TEEEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC-c-----cEEEE
Confidence            457899999999999999999999966789999998666555543  346667777777666555554 3     89999


Q ss_pred             EECCCCcEEEEEeecCceeEEEEcCCeEEEEEcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEEEe-cCCC
Q 015198          119 WDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACP-GLQR  196 (411)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~d  196 (411)
                      ||+.+++.+..+.+...|.++.++++...++.++.|++||+.++ +.+..+..   +...+++++    .+++++ |+.+
T Consensus        86 Wd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~----~~la~~sg~~~  158 (355)
T 3vu4_A           86 WDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN----GLLVYSNEFNL  158 (355)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET----TEEEEEESSCT
T ss_pred             EECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc----cEEEEeCCCcC
Confidence            99999999999999999999999999988889999999999988 77766655   345666766    356665 8899


Q ss_pred             CeEEEEEcCCcc-----------------eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC
Q 015198          197 GQVRIEHFGLNM-----------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV  259 (411)
Q Consensus       197 g~i~i~~~~~~~-----------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~  259 (411)
                      |.|++|+.....                 +..+.+|...|.+++|+|+|++|++++.|+..|++||+++++.+..+..+.
T Consensus       159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~  238 (355)
T 3vu4_A          159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL  238 (355)
T ss_dssp             TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT
T ss_pred             cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            999999987643                 788899999999999999999999999999229999999999999998544


Q ss_pred             CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccc
Q 015198          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR  339 (411)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (411)
                      |...|.+++|+|++++|++++.|++|+|||++.+...+                                  ...+..  
T Consensus       239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~----------------------------------~~~~~~--  282 (355)
T 3vu4_A          239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK----------------------------------RHALKG--  282 (355)
T ss_dssp             CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC----------------------------------SEETTT--
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc----------------------------------cccccc--
Confidence            77899999999999999999999999999998865321                                  111111  


Q ss_pred             cccCcccccccceEEEEeCCCc---eEEEEEccC-CEEEEEEeCCcEEEEEEecCCCCcE
Q 015198          340 GVLPKYFSSEWSFAQFHIPEVT---HFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEM  395 (411)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~~~~~  395 (411)
                      .+++.++.+.|.++.+.++...   ...++|+++ +.|++++.||.+++|.+...+.++.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~~  342 (355)
T 3vu4_A          283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMER  342 (355)
T ss_dssp             TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTTE
T ss_pred             eeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCce
Confidence            1577888899999999988744   377899998 5788888899999999987555543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-38  Score=295.53  Aligned_cols=288  Identities=8%  Similarity=0.039  Sum_probs=242.6

Q ss_pred             CCCccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           34 HPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        34 ~~~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      +.....+.+|.+.|++++|+|++++|++|+ |+.|+|||..+........  .+...+..+.|+|++..+++++.|    
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--~~~~~v~~~~~sp~g~~lasg~~d----  127 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT--MPCTWVMACAYAPSGCAIACGGLD----  127 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSSCCCEEEECTTSSEEEEESTT----
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe--cCCCCEEEEEECCCCCEEEEeeCC----
Confidence            344456789999999999999999999999 9999999998766554443  566678889999999999999998    


Q ss_pred             CCeEEEEECCCC------cEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc
Q 015198          113 PTKVIIWDDHQS------RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH  182 (411)
Q Consensus       113 d~~i~vwd~~~~------~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (411)
                       +.+++|++...      .....+. |...|.++.|+|++..++   .|+.|++||+++++.+..+..|...+..+.+++
T Consensus       128 -~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          128 -NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP  206 (354)
T ss_dssp             -SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred             -CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence             99999997643      2234444 899999999999987666   699999999999999999999988888888888


Q ss_pred             CCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC
Q 015198          183 HSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR  261 (411)
Q Consensus       183 ~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~  261 (411)
                      ++++.+|++ |+.||.|++|+.. ++.+..+.+|...|.+++|+|++.+|++++.|+. |++||+++++.+..+....+.
T Consensus       207 ~~~g~~l~s-gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~  284 (354)
T 2pbi_B          207 SETGNTFVS-GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESII  284 (354)
T ss_dssp             CSSCCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCC
T ss_pred             CCCCCEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCcc
Confidence            877777775 6689999999865 5667788999999999999999999999999999 999999999888777654345


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccc
Q 015198          262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGV  341 (411)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (411)
                      ..+.+++|+|++++|++++.|+.|+|||+.+++...                                            
T Consensus       285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~--------------------------------------------  320 (354)
T 2pbi_B          285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS--------------------------------------------  320 (354)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE--------------------------------------------
T ss_pred             cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE--------------------------------------------
Confidence            578999999999999999999999999998876432                                            


Q ss_pred             cCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198          342 LPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (411)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~  386 (411)
                                  .+.-+.+.+..++|+|+ ..|++++.||.|++|.
T Consensus       321 ------------~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          321 ------------ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ------------EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ------------EEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence                        22223356778899998 6788888899999994

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.3e-38  Score=289.32  Aligned_cols=248  Identities=12%  Similarity=0.141  Sum_probs=210.4

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      .....+|.+.|++++|+|++++|++|+ ||.|+|||+++.......  ..+...+.++.|++++..+++++.|     +.
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~s~d-----~~   78 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI--QVTETPVRAGKFIARKNWIIVGSDD-----FR   78 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEEEGGGTEEEEEETT-----SE
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe--eccCCcEEEEEEeCCCCEEEEECCC-----CE
Confidence            345778999999999999999999999 999999999876554443  3677778899999999999999988     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      |++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||++++ .....+..|...+..+++++. ++..|+
T Consensus        79 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~  157 (304)
T 2ynn_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK-DPSTFA  157 (304)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT-CTTEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC-CCCEEE
Confidence            9999999999999988 899999999999998887   6999999999877 555677788775555555442 334565


Q ss_pred             EecCCCCeEEEEEcCC-cceEEE-eccccceeEEEecC--CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE
Q 015198          191 CPGLQRGQVRIEHFGL-NMIKLI-NAHDSHIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~-~~~~~~-~~~~~~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (411)
                      + |+.|+.|++|+... .....+ ..|...+..+.|+|  ++.+|++++.|+. |++||+++++++.++.+  |...|.+
T Consensus       158 s-gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~--h~~~v~~  233 (304)
T 2ynn_A          158 S-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVSF  233 (304)
T ss_dssp             E-EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEEC--CSSCEEE
T ss_pred             E-EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeCC--CCCCEEE
Confidence            4 67999999999754 333333 45678899999986  7789999999999 99999999999999998  8889999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          267 IALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       267 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      ++|+|++++|++++.||+|++||+++++..
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVE  263 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            999999999999999999999999988754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6e-38  Score=289.47  Aligned_cols=281  Identities=12%  Similarity=0.084  Sum_probs=216.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCC----------CcceEEeecCCCCEEEEEEeccCCeEEEEecCCCC
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEP----------FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS  109 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  109 (411)
                      ...|...|.+++|+|||++|++++|+++++||...          ........ ..+...+.++.|++++.++ +++.| 
T Consensus        26 ~~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~l~-~~s~d-  102 (344)
T 4gqb_B           26 PACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAG-VQTEAGVADLTWVGERGIL-VASDS-  102 (344)
T ss_dssp             CSSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEE-EEESSCEEEEEEETTTEEE-EEETT-
T ss_pred             cccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeee-eccCCCEEEEEEeCCCeEE-EEECC-
Confidence            34578889999999999999988888899987421          00000010 1234468889999987654 55666 


Q ss_pred             CCCCCeEEEEECCCCcEEEEEe-----ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEc
Q 015198          110 QYPPTKVIIWDDHQSRCIGEFA-----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS  181 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  181 (411)
                          |.|+|||+.+++.+..+.     |...|.+++|+|++.+++   .|+.|++||+++++++..+.+|...+..++++
T Consensus       103 ----g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~  178 (344)
T 4gqb_B          103 ----GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS  178 (344)
T ss_dssp             ----SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ----CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec
Confidence                999999999987654432     789999999999999888   69999999999999999999998866655555


Q ss_pred             cCCCceEEEEecCCCCeEEEEEcCC-cceEEE--eccccceeEEEecCC-CCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          182 HHSSTSVLACPGLQRGQVRIEHFGL-NMIKLI--NAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       182 ~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~--~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      ++... +++ +|+.|+.|++|+... +....+  ..|...+.+++|+|+ +++|++|+.|+. |++||+++++++.++.+
T Consensus       179 ~~~~~-~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~~~~~~~~~  255 (344)
T 4gqb_B          179 PHKDS-VFL-SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKSTSCVLSSAV  255 (344)
T ss_dssp             SSCTT-EEE-EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC--CCEEEEC
T ss_pred             CCCCC-cee-eeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCCcEEEEEcC
Confidence            54432 344 577899999998764 444444  345667899999985 568999999999 99999999999999998


Q ss_pred             CCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccc
Q 015198          258 GVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLS  336 (411)
Q Consensus       258 ~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (411)
                        |...|++++|+|++ ++|++++.|++|+|||+++++..                                        
T Consensus       256 --h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~----------------------------------------  293 (344)
T 4gqb_B          256 --HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF----------------------------------------  293 (344)
T ss_dssp             --CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE----------------------------------------
T ss_pred             --CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE----------------------------------------
Confidence              88899999999998 57999999999999999877532                                        


Q ss_pred             ccccccCcccccccceEEEEeCCCceEEEEEccC-CE-EEEEEeCCcEEEEEEec
Q 015198          337 FMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NT-VVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~dg~~~~~~~~~  389 (411)
                                       .+.-+.+.+..++|+|+ +. |++++.||.|++|.++.
T Consensus       294 -----------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          294 -----------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             -----------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             -----------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence                             11222356778899997 44 55677899999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.4e-37  Score=281.14  Aligned_cols=293  Identities=16%  Similarity=0.221  Sum_probs=235.1

Q ss_pred             ccccCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcce---EEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198           37 TAFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKET---FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      ...+.+|.+.|++++|+|++ ++|++|+ |+.|++|++......   ....+.+|...+.++.|++++.++++++.|   
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D---   86 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD---   86 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT---
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC---
Confidence            34578999999999999975 8999999 999999998753322   223455788889999999999999999988   


Q ss_pred             CCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC---
Q 015198          112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS---  184 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---  184 (411)
                        ++|++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||++ ++.+..+..|...+..+.+.+..   
T Consensus        87 --~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           87 --KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             --SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred             --CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence              999999999999999888 999999999999998887   69999999986 46777788887766666666543   


Q ss_pred             -CceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCc
Q 015198          185 -STSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA  262 (411)
Q Consensus       185 -~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~  262 (411)
                       ++..+++ ++.|+.|++|+... +....+.+|...|.+++|+|+|++|++++.|+. |++||+.+++.+..+..   ..
T Consensus       164 ~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~---~~  238 (319)
T 3frx_A          164 DDSVTIIS-AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSA---QD  238 (319)
T ss_dssp             --CCEEEE-EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---CS
T ss_pred             CCccEEEE-EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---CC
Confidence             2335554 67899999999765 456678899999999999999999999999999 99999999999988874   45


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccccccccc
Q 015198          263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL  342 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (411)
                      .|.+++|+|++.+|++++.++ +++|+++.+........+                                       .
T Consensus       239 ~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~---------------------------------------~  278 (319)
T 3frx_A          239 EVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPE---------------------------------------F  278 (319)
T ss_dssp             CEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCC---------------------------------------C
T ss_pred             cEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCcc---------------------------------------c
Confidence            799999999999999888665 999999876543211111                                       0


Q ss_pred             CcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                      ..+         .+........++|+|+ +.|++++.||.|++|++..
T Consensus       279 ~~~---------~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          279 AGY---------SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             TTC---------CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             ccc---------ccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            000         0001124556899999 7788888899999999875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5e-37  Score=283.91  Aligned_cols=295  Identities=15%  Similarity=0.160  Sum_probs=229.9

Q ss_pred             cccCCCCC-CeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEee-cCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           38 AFSDVDEI-ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRD-LKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        38 ~~~~~h~~-~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      ..+.+|.+ .|++++|+|+|++||+|+ |+.|+||++++........ ..+|...+.++.|+|++.+|++++.|     +
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~   83 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----A   83 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----C
Confidence            45678887 999999999999999999 9999999998754332222 24788889999999999999999988     9


Q ss_pred             eEEEEECCCCc--EEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc---eeeEEEeccCCCcceEEEccCCC
Q 015198          115 KVIIWDDHQSR--CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCCLSHHSS  185 (411)
Q Consensus       115 ~i~vwd~~~~~--~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~  185 (411)
                      .|++||+..+.  ++..+. |...|.+++|+|++.+++   .|+.|++||++++   +.+..+..|...+  .++.++|+
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v--~~~~~~p~  161 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV--KHVVWHPS  161 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE--EEEEECSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe--EEEEECCC
Confidence            99999987764  456666 899999999999998888   6999999999765   3455666676644  45555666


Q ss_pred             ceEEEEecCCCCeEEEEEcCCc---ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-------------
Q 015198          186 TSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-------------  249 (411)
Q Consensus       186 ~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-------------  249 (411)
                      +.+|++ |+.|+.|++|+....   ....+.+|...|.+++|+|+|++|++++.|+. |+|||....             
T Consensus       162 ~~~l~s-~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~  239 (345)
T 3fm0_A          162 QELLAS-ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDP  239 (345)
T ss_dssp             SSCEEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---C
T ss_pred             CCEEEE-EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCC
Confidence            667765 668999999987653   35678899999999999999999999999999 999996322             


Q ss_pred             --ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCC
Q 015198          250 --TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPST  327 (411)
Q Consensus       250 --~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (411)
                        +++..+.+. |...|.+++|+|++..|++++.|+.|++|+++.+.....                             
T Consensus       240 ~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----------------------------  289 (345)
T 3fm0_A          240 SWKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ-----------------------------  289 (345)
T ss_dssp             EEEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTS-----------------------------
T ss_pred             ccceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcce-----------------------------
Confidence              233444433 677999999999999999999999999999987653210                             


Q ss_pred             CCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEec
Q 015198          328 GANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~  389 (411)
                           ..+...             ......+...+..++|+|+  ..|++++.||.|++|++..
T Consensus       290 -----~~~~~~-------------~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          290 -----PTFSLT-------------AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             -----CCEEEE-------------EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             -----eeEEEE-------------eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence                 000000             0000122356788999997  4788888999999999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.9e-36  Score=278.52  Aligned_cols=296  Identities=16%  Similarity=0.204  Sum_probs=226.2

Q ss_pred             ccccCCCCCCeEEEEE-----cC-CCCEEEEEe-CCcEEEEecCCCcc-----eEEeecCCCCEEEEEEeccCCeEEEEe
Q 015198           37 TAFSDVDEIELISVSW-----NQ-DYGCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSGGFRIVEMLFRCNILALVG  104 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~-----s~-~g~~la~g~-dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~s  104 (411)
                      ...+.+|.+.|++++|     ++ ++++|++|+ |+.|+||++...+.     .....+.+|...+.++.|++++.++++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence            3457899999999999     76 899999999 99999999975321     223345678888999999999999999


Q ss_pred             cCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEe---ccCCCcce
Q 015198          105 AGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE---TLANLRGL  177 (411)
Q Consensus       105 ~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~---~~~~~~~~  177 (411)
                      ++.|     ++|++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||+... ......   .|...+..
T Consensus        94 ~s~D-----~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           94 SSWD-----KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSC  167 (343)
T ss_dssp             EETT-----SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEE
T ss_pred             EcCC-----CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeee
Confidence            9988     999999999999999887 999999999999998777   6999999999743 332322   34444444


Q ss_pred             EEEccCCC--------ceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECC-C
Q 015198          178 CCLSHHSS--------TSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-D  248 (411)
Q Consensus       178 ~~~~~~~~--------~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-~  248 (411)
                      +.+++...        +.++++ ++.|+.|++|+........+.+|...|.+++|+|+|++|++|+.|+. |++||+. .
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~~  245 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFAS-VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILNL  245 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEE-EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSCC
T ss_pred             eeeccccccccccCCCCCEEEE-EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCCC
Confidence            44444321        146665 66899999999888888889999999999999999999999999999 9999994 4


Q ss_pred             CceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC--CCCCCCCCCCcccccccCCCCCccccCCC
Q 015198          249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE--DSSSSLSTPSQSTELLNHSSSFDTLISPS  326 (411)
Q Consensus       249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (411)
                      ......+.   +...|.+++|+|++++|+++ .|+.|++|++.+++...  ....+                        
T Consensus       246 ~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~------------------------  297 (343)
T 2xzm_R          246 TYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAE------------------------  297 (343)
T ss_dssp             SSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCC------------------------
T ss_pred             cccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecC------------------------
Confidence            44455554   34469999999999988755 57779999998876432  00000                        


Q ss_pred             CCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          327 TGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                          .          +...       ...+-....+..++|+++ ..|++++.||.|++|.+..
T Consensus       298 ----~----------~~~~-------~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          298 ----P----------ITKA-------EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             ----S----------GGGB-------TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             ----c----------chhh-------hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence                0          0000       000011234567899998 7788889999999999874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-37  Score=289.41  Aligned_cols=282  Identities=13%  Similarity=0.107  Sum_probs=214.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-------CCcEEEEecCCCcce--EEeecCCCCEEEEEEeccCCeEEEEecCCCCC
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-------SCGFRIYNCEPFKET--FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ  110 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-------dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  110 (411)
                      ...|+..|++++|+|||++||+|+       |+.|++|+..+....  +......+...+.++.|++++.+++++. |  
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~-d--  114 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASD-S--  114 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEET-T--
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEEC-C--
Confidence            457999999999999999999998       356788877543221  1111125667799999999988776654 4  


Q ss_pred             CCCCeEEEEECCCCcEEEEE-----eecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc
Q 015198          111 YPPTKVIIWDDHQSRCIGEF-----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH  182 (411)
Q Consensus       111 ~~d~~i~vwd~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (411)
                         +.|+|||+.+++.....     .|...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+..+++++
T Consensus       115 ---g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~  191 (357)
T 4g56_B          115 ---GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP  191 (357)
T ss_dssp             ---SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             ---CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence               99999999888654322     3788999999999998887   699999999999999999999888666666665


Q ss_pred             CCCceEEEEecCCCCeEEEEEcCC-cceEEE--eccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCC
Q 015198          183 HSSTSVLACPGLQRGQVRIEHFGL-NMIKLI--NAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (411)
Q Consensus       183 ~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~--~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (411)
                      +.+. +++ +++.||.|++|+... +....+  ..|...+.+++|+|++ .+|++|+.|+. |++||+++++.+..+.. 
T Consensus       192 ~~~~-~~~-s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~~~~~~~~~~-  267 (357)
T 4g56_B          192 GKDT-IFL-SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKNPDSAQTSAV-  267 (357)
T ss_dssp             TCSS-CEE-EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSCGGGCEEECC-
T ss_pred             CCCc-eee-eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCCCcEeEEEec-
Confidence            5443 333 466899999998754 333333  4567789999999974 68999999999 99999999999999988 


Q ss_pred             CCCcceEEEEeCCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccc
Q 015198          259 VDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSF  337 (411)
Q Consensus       259 ~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (411)
                       |...|++++|+|++ ++|++++.|++|+|||+++++.....                                      
T Consensus       268 -~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--------------------------------------  308 (357)
T 4g56_B          268 -HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--------------------------------------  308 (357)
T ss_dssp             -CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--------------------------------------
T ss_pred             -cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--------------------------------------
Confidence             78899999999987 57999999999999999887643211                                      


Q ss_pred             cccccCcccccccceEEEEeCCCceEEEEEcc-C-CEEEEEEeCCcEEEEEEec
Q 015198          338 MRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS-Q-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                         -+.+.+..++|+| + ..|++++.||.|++|.+..
T Consensus       309 -------------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          309 -------------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             -------------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             -------------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence                               1224567789998 4 6788899999999999976

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.2e-36  Score=282.70  Aligned_cols=280  Identities=13%  Similarity=0.135  Sum_probs=225.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecC----------------CCCEEEEEEeccCCeEEEEec
Q 015198           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLK----------------SGGFRIVEMLFRCNILALVGA  105 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~s~  105 (411)
                      +|.+.|.+++|+|||++||+|+++.++||++.++........+                .+...+.++.|++++..++++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~  141 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  141 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence            6999999999999999999998999999999876554333211                112247889999999999999


Q ss_pred             CCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEc
Q 015198          106 GDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS  181 (411)
Q Consensus       106 ~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  181 (411)
                      +.|     +.|++||+.+++.+..+. |...|.+++|+|++..++   .|+.|++||+++++....+..+.   .+.++.
T Consensus       142 ~~d-----~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~v~~~~  213 (393)
T 1erj_A          142 AED-----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVTTVA  213 (393)
T ss_dssp             ETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred             cCC-----CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC---CcEEEE
Confidence            988     999999999999988887 899999999999998877   69999999999999887776443   344455


Q ss_pred             cCC-CceEEEEecCCCCeEEEEEcCCc-ceEEE-------eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC---
Q 015198          182 HHS-STSVLACPGLQRGQVRIEHFGLN-MIKLI-------NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG---  249 (411)
Q Consensus       182 ~~~-~~~~l~~~g~~dg~i~i~~~~~~-~~~~~-------~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~---  249 (411)
                      +++ ++.+|++ |+.|+.|++|+.... .+..+       .+|...|.+++|+|+|++|++++.|+. |++||+++.   
T Consensus       214 ~~~~~~~~l~~-~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~~~  291 (393)
T 1erj_A          214 VSPGDGKYIAA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNK  291 (393)
T ss_dssp             ECSTTCCEEEE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC------
T ss_pred             EECCCCCEEEE-EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCCc
Confidence            555 5566665 678999999987653 34444       578999999999999999999999999 999999763   


Q ss_pred             ---------ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCc
Q 015198          250 ---------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD  320 (411)
Q Consensus       250 ---------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (411)
                               .+...+.+  |...|.+++|+|++++|++++.|+.|++||+.+++...                       
T Consensus       292 ~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~-----------------------  346 (393)
T 1erj_A          292 SDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL-----------------------  346 (393)
T ss_dssp             ---------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE-----------------------
T ss_pred             ccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE-----------------------
Confidence                     34456666  78899999999999999999999999999998876432                       


Q ss_pred             cccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEcc------C-CEEEEEEeCCcEEEEEEec
Q 015198          321 TLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS------Q-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                                       .++-+...+..++|++      + +.|++++.||.+++|++..
T Consensus       347 ---------------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          347 ---------------------------------MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ---------------------------------EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             ---------------------------------EECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence                                             2333344566677765      4 5688888899999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.6e-36  Score=272.74  Aligned_cols=285  Identities=13%  Similarity=0.210  Sum_probs=231.9

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      .....+|.+.|++++|+|++++|++|+ |+.|++|+..+.+...  .+..|...+.++.|++++..+++++.|     +.
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~   88 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDD-----KT   88 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--hhccCCCceEEEEEcCCCCEEEEECCC-----CE
Confidence            345689999999999999999999999 9999999998755433  344788889999999999999999988     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      |++||+.+++.+..+. |...|.++.|+|++.+++   .|+.|++||+++++.+..+..|..++.  ++.+++++.++++
T Consensus        89 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~  166 (312)
T 4ery_A           89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS--AVHFNRDGSLIVS  166 (312)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEEECTTSSEEEE
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEE--EEEEcCCCCEEEE
Confidence            9999999999999988 899999999999998887   699999999999999999988877554  4555556667765


Q ss_pred             ecCCCCeEEEEEcCC-cceEEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc-eEEEE
Q 015198          192 PGLQRGQVRIEHFGL-NMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE-IYSIA  268 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~-~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~-v~~l~  268 (411)
                       |+.||.|++|+... +.+..+ ..+...+..++|+|++++|++++.|+. |++||+++++.+..+..+..... +....
T Consensus       167 -~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
T 4ery_A          167 -SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCIFANF  244 (312)
T ss_dssp             -EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred             -EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence             66899999999765 344444 356678999999999999999999999 99999999999988887432222 22333


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccc
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS  348 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (411)
                      ..+++.+|++++.||.|++||+++++...                                                   
T Consensus       245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~---------------------------------------------------  273 (312)
T 4ery_A          245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQ---------------------------------------------------  273 (312)
T ss_dssp             ECSSSCEEEECCTTSCEEEEETTTCCEEE---------------------------------------------------
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCchhhh---------------------------------------------------
Confidence            34688999999999999999998876442                                                   


Q ss_pred             ccceEEEEeCCCceEEEEEccC-CEEEEEE--eCCcEEEEEEe
Q 015198          349 EWSFAQFHIPEVTHFIAAFGSQ-NTVVIVS--MDGSFYRCSFD  388 (411)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~dg~~~~~~~~  388 (411)
                           .++-+.+.+..++|+++ +.+++++  .||.|++|+.+
T Consensus       274 -----~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          274 -----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             -----EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             -----hhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence                 23333456778899998 5555555  49999999875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.5e-37  Score=289.82  Aligned_cols=289  Identities=15%  Similarity=0.163  Sum_probs=229.1

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..+.+|.+.|++++|+|++++|++|+ |+.|+|||+.+.+......  .|...+.++.|+|++..+++++.|     +.+
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--~h~~~v~~~~~s~~g~~las~~~d-----~~v  132 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK--LHCPWVMECAFAPNGQSVACGGLD-----SAC  132 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--CCCTTCCCCEECTTSSEEEECCSS-----SCC
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe--cCCCCEEEEEECCCCCEEEEeeCC-----CcE
Confidence            45789999999999999999999999 9999999998866554443  566678888999999999999998     999


Q ss_pred             EEEECCCCc-------EEEEEe-ecCceeEEEEcCCe-E-EEE--EcCeEEEEEcCCceeeEEE-----eccCCCcceEE
Q 015198          117 IIWDDHQSR-------CIGEFA-FRSDVRSVKLSRDR-I-VVV--LEHKIYVYSFVDLKLLHQI-----ETLANLRGLCC  179 (411)
Q Consensus       117 ~vwd~~~~~-------~~~~~~-~~~~i~~~~~~~~~-~-~~~--~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~  179 (411)
                      ++||+.+..       ....+. |...|.++.|.|++ . ++.  .|+.|++||+++++.+..+     ..|..  .+.+
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~--~v~~  210 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA--DVLS  210 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS--CEEE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc--CeEE
Confidence            999986532       223333 78899999999864 2 333  7999999999999988877     33444  4455


Q ss_pred             EccCC-CceEEEEecCCCCeEEEEEcC--CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198          180 LSHHS-STSVLACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       180 ~~~~~-~~~~l~~~g~~dg~i~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (411)
                      +.+++ ++.+++ +|+.|+.|++|+..  ...+..+.+|...|.+++|+|++++|++++.|+. |++||+++++.+..+.
T Consensus       211 ~~~~~~~~~~l~-sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          211 LSINSLNANMFI-SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             EEECSSSCCEEE-EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEEEC
T ss_pred             EEeecCCCCEEE-EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEEec
Confidence            55544 445555 47799999999975  4677888999999999999999999999999999 9999999999988876


Q ss_pred             CCCC-----CcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCC
Q 015198          257 RGVD-----RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP  331 (411)
Q Consensus       257 ~~~~-----~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (411)
                      ....     ...|.+++|+|+|++|++|+.||.|++||+.+++........                             
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-----------------------------  339 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL-----------------------------  339 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS-----------------------------
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc-----------------------------
Confidence            5321     124899999999999999999999999999877643210000                             


Q ss_pred             CCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                             ..-+.+.+..++|+++ ..|++++.||.+++|.+..
T Consensus       340 -----------------------~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          340 -----------------------QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             -----------------------CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             -----------------------cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence                                   0012245667899998 6778888899999999874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.6e-36  Score=296.84  Aligned_cols=289  Identities=12%  Similarity=0.099  Sum_probs=224.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec-----CCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-----KSGGFRIVEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      ....+|.+.|++++|+|+|++|++|+ |+.|+|||+.+.+.......     ..|...+.++.|+|++..+++++.|   
T Consensus       184 ~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D---  260 (611)
T 1nr0_A          184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD---  260 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT---
T ss_pred             eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC---
Confidence            34678999999999999999999999 99999999987554332210     1577889999999999999999988   


Q ss_pred             CCCeEEEEECCCCcEEEEE-------------------------------------------e-ecCceeEEEEcCCeEE
Q 015198          112 PPTKVIIWDDHQSRCIGEF-------------------------------------------A-FRSDVRSVKLSRDRIV  147 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~-------------------------------------------~-~~~~i~~~~~~~~~~~  147 (411)
                        ++|++||+.+++++..+                                           . |...|.+++|+|++.+
T Consensus       261 --~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~  338 (611)
T 1nr0_A          261 --KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT  338 (611)
T ss_dssp             --SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             --CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE
Confidence              99999999888765443                                           2 6678999999999998


Q ss_pred             EE---EcCeEEEEEcCCceeeEEE-eccCC--------------------------------------------------
Q 015198          148 VV---LEHKIYVYSFVDLKLLHQI-ETLAN--------------------------------------------------  173 (411)
Q Consensus       148 ~~---~dg~i~iwd~~~~~~~~~~-~~~~~--------------------------------------------------  173 (411)
                      ++   .|+.|++||+.+++....+ ..|..                                                  
T Consensus       339 l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~  418 (611)
T 1nr0_A          339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA  418 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence            88   6999999999776543221 00000                                                  


Q ss_pred             -----------------------------CcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE--EEeccccceeEE
Q 015198          174 -----------------------------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK--LINAHDSHIACF  222 (411)
Q Consensus       174 -----------------------------~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~--~~~~~~~~i~~l  222 (411)
                                                   ...+.+++++|++.+|++ |+.|+.|++|+.......  ...+|...|+++
T Consensus       419 ~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~las-gs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v  497 (611)
T 1nr0_A          419 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV-GGQDSKVHVYKLSGASVSEVKTIVHPAEITSV  497 (611)
T ss_dssp             ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE-EETTSEEEEEEEETTEEEEEEEEECSSCEEEE
T ss_pred             EeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEE-eCCCCeEEEEEccCCceeeeeccCCCCceEEE
Confidence                                         012345667778888876 668999999998764332  226799999999


Q ss_pred             EecCCCCEEEEEcCCCeEEEEEECCC-CceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 015198          223 TLTLDGLLLATASTRGTLIRIFNTVD-GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSS  301 (411)
Q Consensus       223 ~~sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~  301 (411)
                      +|+|+|++|++++.|+. |++||+.+ ++.+.......|...|.+++|+|||++|++++.|++|+|||++++++..    
T Consensus       498 ~fspdg~~las~s~d~~-v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~----  572 (611)
T 1nr0_A          498 AFSNNGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP----  572 (611)
T ss_dssp             EECTTSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC----
T ss_pred             EECCCCCEEEEEcCCCC-EEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccccc----
Confidence            99999999999999999 99999987 5544331112278899999999999999999999999999998765321    


Q ss_pred             CCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeC-CCceEEEEEccCCEEEEEEeCC
Q 015198          302 SLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIP-EVTHFIAAFGSQNTVVIVSMDG  380 (411)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dg  380 (411)
                                                                        ......+ .+.+..++|+++++|++++.||
T Consensus       573 --------------------------------------------------~~~~~~h~~~~v~~v~fs~d~~l~s~~~D~  602 (611)
T 1nr0_A          573 --------------------------------------------------IIIKGAHAMSSVNSVIWLNETTIVSAGQDS  602 (611)
T ss_dssp             --------------------------------------------------EEETTSSTTSCEEEEEEEETTEEEEEETTS
T ss_pred             --------------------------------------------------chhhccCcccCeeEEEEcCCCEEEEecCCC
Confidence                                                              0000011 2456778999998899999999


Q ss_pred             cEEEEEE
Q 015198          381 SFYRCSF  387 (411)
Q Consensus       381 ~~~~~~~  387 (411)
                      .|++|++
T Consensus       603 ~i~lW~~  609 (611)
T 1nr0_A          603 NIKFWNV  609 (611)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEec
Confidence            9999987

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-35  Score=270.49  Aligned_cols=284  Identities=12%  Similarity=0.126  Sum_probs=240.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..+.+|.+.|++++|+|++++|++|+ |+.|++||+.+.+....  +..|...+.++.|++++..+++++.|     +.|
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i   98 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT--LDGHTGTIWSIDVDCFTKYCVTGSAD-----YSI   98 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----TEE
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCCCEEEEEeCC-----CeE
Confidence            34789999999999999999999999 99999999987655443  44788889999999999999998888     999


Q ss_pred             EEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---Ec-----CeEEEEEcCCce-----------eeEEEeccCCCcce
Q 015198          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE-----HKIYVYSFVDLK-----------LLHQIETLANLRGL  177 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d-----g~i~iwd~~~~~-----------~~~~~~~~~~~~~~  177 (411)
                      ++||+.+++.+..+.+...+.+++|+|++.+++   .+     +.|++||+...+           .+..+..+.....+
T Consensus        99 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B           99 KLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             EEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             EEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            999999999999999999999999999998888   45     899999996543           33344444443356


Q ss_pred             EEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE
Q 015198          178 CCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (411)
                      .++.+++++.+|++ ++.||.|++|+...  ..+..+..|...|.+++|+|++++|++++.|+. |++||+++++.+..+
T Consensus       179 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          179 TVAGWSTKGKYIIA-GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVSTLQVLKKY  256 (369)
T ss_dssp             EEEEECGGGCEEEE-EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             eEEEEcCCCCEEEE-EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCCCceeeee
Confidence            66677777778776 56899999999875  667788899999999999999999999999999 999999999999888


Q ss_pred             eCCCCCcceEEEEeCCCCCEEEEEeCCC--------------cEEEEEccccccCCCCCCCCCCCCcccccccCCCCCcc
Q 015198          256 RRGVDRAEIYSIALSPNVQWLAVASDKG--------------TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDT  321 (411)
Q Consensus       256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg--------------~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (411)
                      .   +...+..++|+|+++++++++.++              .+++||+.+++..                         
T Consensus       257 ~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------------------  308 (369)
T 3zwl_B          257 E---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI-------------------------  308 (369)
T ss_dssp             E---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE-------------------------
T ss_pred             c---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch-------------------------
Confidence            7   566899999999999999999998              7888888777643                         


Q ss_pred             ccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          322 LISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                                     ..+..+...+..++|+++ +.|++++.||.|++|.+..
T Consensus       309 -------------------------------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          309 -------------------------------GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             -------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             -------------------------------hheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence                                           234444567778999998 6788888899999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=271.93  Aligned_cols=240  Identities=15%  Similarity=0.200  Sum_probs=213.2

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+|...|.+++|++++.++++++ |+.|++||+.+.+......  .+...+..+.|+|++..+++++.+     +.|+
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~g~~d-----g~v~  147 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID--AGPVDAWTLAFSPDSQYLATGTHV-----GKVN  147 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--CCTTCCCCEEECTTSSEEEEECTT-----SEEE
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe--CCCccEEEEEECCCCCEEEEEcCC-----CcEE
Confidence            4679999999999999999999999 9999999999866544433  566677788999999999999988     9999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      +||+.+++....+. +...|.+++|+|++.+++   .|+.|++||+++++.+..+..|..++..++++  +++.+|++ |
T Consensus       148 i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s--pd~~~l~s-~  224 (321)
T 3ow8_A          148 IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS--PDSQLLVT-A  224 (321)
T ss_dssp             EEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEEC--TTSCEEEE-E
T ss_pred             EEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEc--CCCCEEEE-E
Confidence            99999999988887 788899999999999888   69999999999999999999888766655555  45667765 6


Q ss_pred             CCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198          194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (411)
Q Consensus       194 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (411)
                      +.|+.|++|+... .....+.+|...|.+++|+|++++|++++.|+. |++||+.+++++.++..  |...|.+++|+|+
T Consensus       225 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~--h~~~v~~v~~s~~  301 (321)
T 3ow8_A          225 SDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFFD--HQDQVWGVKYNGN  301 (321)
T ss_dssp             CTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTT
T ss_pred             cCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEcC--CCCcEEEEEECCC
Confidence            7899999998764 567788899999999999999999999999999 99999999999999987  8889999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcc
Q 015198          273 VQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       273 g~~l~s~s~dg~I~vwd~~  291 (411)
                      +++|++++.||.|+|||+.
T Consensus       302 g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          302 GSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SSEEEEEETTCCEEEEECC
T ss_pred             CCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999963

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.5e-36  Score=276.94  Aligned_cols=244  Identities=13%  Similarity=0.113  Sum_probs=198.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEE--eecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR--RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      .|...|.+++|+|++ .|++|+ ||.|+|||+++.+....  ..+.+|...|.++.|++++..+++++.|     +.|++
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~i  153 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIKV  153 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEEE
Confidence            356789999999996 566777 99999999987665433  2334788889999999999999999988     99999


Q ss_pred             EECCCCcEEEEEe-ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      ||+.+++++..+. |...|.+++|++++. +++   .|+.|++||+++++....+..+.....+.++.+++++..++++|
T Consensus       154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg  233 (344)
T 4gqb_B          154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG  233 (344)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred             EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence            9999999999998 999999999999874 343   69999999999999888875544444556666666443333457


Q ss_pred             CCCCeEEEEEcC-CcceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198          194 LQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       194 ~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (411)
                      +.||.|++|+.. ++.+..+.+|...|++++|+|++ ++|++|+.|+. |+|||+.+++++ .+.+  |...|++++|+|
T Consensus       234 ~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~-~~~~--H~~~V~~v~~sp  309 (344)
T 4gqb_B          234 DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELF-RSQA--HRDFVRDATWSP  309 (344)
T ss_dssp             ETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEE-EECC--CSSCEEEEEECS
T ss_pred             ccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEE-EEcC--CCCCEEEEEEeC
Confidence            799999999865 57788899999999999999998 58999999999 999999888765 4555  888999999999


Q ss_pred             CCC-EEEEEeCCCcEEEEEcccccc
Q 015198          272 NVQ-WLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       272 dg~-~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      +++ +|++++.|++|++|++.+...
T Consensus       310 ~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          310 LNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             SSTTEEEEEETTSCEEEEECCC---
T ss_pred             CCCeEEEEEcCCCeEEEEECCCCCC
Confidence            986 577999999999999987643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-35  Score=270.47  Aligned_cols=286  Identities=14%  Similarity=0.168  Sum_probs=215.5

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec-CC-CCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-KS-GGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      ...+.+|.+.|++++|+|+  +|++|+ |+.|+||++..........+ .. |...+.++.|+|++.++++++.|     
T Consensus         7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-----   79 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD-----   79 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT-----
T ss_pred             ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC-----
Confidence            3457799999999999998  999999 99999999986433232223 23 77789999999999999999988     


Q ss_pred             CeEEEEECCC-------CcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCC----ceeeEEEeccCCCcceE
Q 015198          114 TKVIIWDDHQ-------SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD----LKLLHQIETLANLRGLC  178 (411)
Q Consensus       114 ~~i~vwd~~~-------~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~  178 (411)
                      +.|++||+..       .+.+..+. |...|.+++|+|++.+++   .|+.|++||++.    .+++..+..|...+  .
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v--~  157 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV--K  157 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE--E
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce--E
Confidence            9999999853       34556666 899999999999999888   699999999943    25667777777744  4


Q ss_pred             EEccCCCceEEEEecCCCCeEEEEEcCC---cceEEEeccccceeEEEecCC--CCEEEEEcCCCeEEEEEECCCC----
Q 015198          179 CLSHHSSTSVLACPGLQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLD--GLLLATASTRGTLIRIFNTVDG----  249 (411)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~---~~~~~~~~~~~~i~~l~~sp~--g~~l~s~s~dg~~I~vwd~~~~----  249 (411)
                      ++.++|++.+|++ |+.|+.|++|+...   +++..+.+|...|.+++|+|+  +.+|++++.|+. |++||+..+    
T Consensus       158 ~v~~~p~~~~l~s-~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~  235 (330)
T 2hes_X          158 HVIWHPSEALLAS-SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDD  235 (330)
T ss_dssp             EEEECSSSSEEEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTS
T ss_pred             EEEECCCCCEEEE-EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCccc
Confidence            5555556677775 66899999998653   467788999999999999998  779999999999 999998654    


Q ss_pred             ----ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCC
Q 015198          250 ----TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISP  325 (411)
Q Consensus       250 ----~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (411)
                          .....+.. .|...|.+++|++++ +|++++.||.|+|||+.+++...                            
T Consensus       236 ~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~----------------------------  285 (330)
T 2hes_X          236 QQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKV----------------------------  285 (330)
T ss_dssp             CEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEE----------------------------
T ss_pred             cceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEE----------------------------
Confidence                23333332 277899999999765 79999999999999987653110                            


Q ss_pred             CCCCCCCCcccccccccCcccccccceEEE-EeCCC-ceEEEEEcc--C-CEEEEEEeCCcEEEEEEec
Q 015198          326 STGANPGSSLSFMRGVLPKYFSSEWSFAQF-HIPEV-THFIAAFGS--Q-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~--~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                                +... ..+.. .+..++|++  + ..|++++.||.|++|++..
T Consensus       286 --------------------------~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          286 --------------------------FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             --------------------------EEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             --------------------------EeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence                                      0000 01112 456788988  4 5688899999999998764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-35  Score=280.35  Aligned_cols=244  Identities=12%  Similarity=0.226  Sum_probs=215.3

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      .....+|.+.|.+++|+|++++|++|+ |+.|+|||+.+.+..  ..+.+|...+.++.|+|++..+++++.|     +.
T Consensus       143 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~--~~~~~h~~~V~~v~~~p~~~~l~s~s~D-----~~  215 (410)
T 1vyh_C          143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--RTMHGHDHNVSSVSIMPNGDHIVSASRD-----KT  215 (410)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--ECCCCCSSCEEEEEECSSSSEEEEEETT-----SE
T ss_pred             EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEEcCCCCCEEEEEEeCCCCEEEEEeCC-----Ce
Confidence            345678999999999999999999999 999999999875543  3355788889999999999999999988     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCC------
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS------  185 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------  185 (411)
                      |++||+.+++++..+. |...|.++.+++++.+++   .|+.|++||+.+++....+..|...+..++++++..      
T Consensus       216 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  295 (410)
T 1vyh_C          216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE  295 (410)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred             EEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhh
Confidence            9999999999999988 899999999999998887   699999999999999999988888766666665421      


Q ss_pred             ------------ceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE
Q 015198          186 ------------TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL  252 (411)
Q Consensus       186 ------------~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~  252 (411)
                                  +.+|++ |+.|+.|++|+.. +..+..+.+|...|.+++|+|+|++|++++.|+. |++||+.+++++
T Consensus       296 ~~~~~~~~~~~~g~~l~s-gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~~~~  373 (410)
T 1vyh_C          296 ATGSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCM  373 (410)
T ss_dssp             CCSCC-------CCEEEE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCC
T ss_pred             hccccccccCCCCCEEEE-EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceE
Confidence                        456654 7799999999965 5677888999999999999999999999999999 999999999999


Q ss_pred             EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      ..+..  |...|++++|+|++.+|++|+.||+|+||+++
T Consensus       374 ~~~~~--h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          374 KTLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEcC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99988  88899999999999999999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-34  Score=286.06  Aligned_cols=275  Identities=17%  Similarity=0.245  Sum_probs=234.8

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+|...|.+++|+|++++|++++ |+.|++|+.... ....  +..+...+.++.|+|++..+++++.+     +.|
T Consensus       297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~v  368 (577)
T 2ymu_A          297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQT--LTGHSSSVWGVAFSPDGQTIASASDD-----KTV  368 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEE
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEE--EeCCCCCEEEEEECCCCCEEEEEeCC-----CEE
Confidence            44678999999999999999999999 999999998753 2222  34677888999999999999999888     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      ++|| .+++.+..+. |...|.+++|+|++.+++   .|+.|++||. +++.+..+..|...+  .++.+++++.+|++ 
T Consensus       369 ~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v--~~~~~s~d~~~l~~-  443 (577)
T 2ymu_A          369 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV--WGVAFSPDDQTIAS-  443 (577)
T ss_dssp             EEEE-TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCE--EEEEECTTSSEEEE-
T ss_pred             EEEc-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCe--EEEEECCCCCEEEE-
Confidence            9999 5677777777 899999999999998887   6899999995 567888888887754  45555666677776 


Q ss_pred             cCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198          193 GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (411)
Q Consensus       193 g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (411)
                      ++.|+.|++|+.+++.+..+.+|...|.+++|+|++++|++++.|+. |++||. +++.+..+.+  |...|++++|+||
T Consensus       444 ~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~d  519 (577)
T 2ymu_A          444 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFSPD  519 (577)
T ss_dssp             EETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEECTT
T ss_pred             EcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEcC-CCCEEEEEeC--CCCCEEEEEEcCC
Confidence            56899999999999999999999999999999999999999999999 999995 7888999988  8889999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccce
Q 015198          273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF  352 (411)
Q Consensus       273 g~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (411)
                      |++|++++.||.|+|||. +++..                                                        
T Consensus       520 g~~l~s~~~dg~v~lwd~-~~~~~--------------------------------------------------------  542 (577)
T 2ymu_A          520 GQTIASASDDKTVKLWNR-NGQLL--------------------------------------------------------  542 (577)
T ss_dssp             SSCEEEEETTSEEEEECT-TSCEE--------------------------------------------------------
T ss_pred             CCEEEEEECcCEEEEEeC-CCCEE--------------------------------------------------------
Confidence            999999999999999995 33322                                                        


Q ss_pred             EEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198          353 AQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (411)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~  386 (411)
                      ..+.-+.+.+..++|+++ ..|++++.||.|++|+
T Consensus       543 ~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          543 QTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            234444567778999998 6788899999999994

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.8e-35  Score=289.18  Aligned_cols=291  Identities=13%  Similarity=0.121  Sum_probs=230.5

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      .....+|.+.|++++|+|+|++||+|+ |+.|+|||+.+.+......+..|...+.++.|+|++..+++++.+. ...+.
T Consensus        52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~-~~~~~  130 (611)
T 1nr0_A           52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR-ERFGH  130 (611)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS-SCSEE
T ss_pred             CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCC-CceeE
Confidence            345679999999999999999999999 9999999997655444444557778899999999998887766530 01247


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      |++||  .++.+..+. |...|.+++|+|++. .++   .|+.|++||..+++.+..+..|...+  .+++++|++.+|+
T Consensus       131 v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V--~~v~fspdg~~la  206 (611)
T 1nr0_A          131 VFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV--HSVRYNPDGSLFA  206 (611)
T ss_dssp             EEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE--EEEEECTTSSEEE
T ss_pred             EEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCce--EEEEECCCCCEEE
Confidence            88887  455555666 899999999999975 344   79999999999999999998888754  4555566677777


Q ss_pred             EecCCCCeEEEEEcC-CcceEEEe-------ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC-----
Q 015198          191 CPGLQRGQVRIEHFG-LNMIKLIN-------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR-----  257 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~-~~~~~~~~-------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-----  257 (411)
                      + |+.|+.|++|+.. ++.+..+.       +|...|.+++|+|+|++|++++.|+. |++||+.+++.+.++..     
T Consensus       207 s-~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~~~~  284 (611)
T 1nr0_A          207 S-TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIE  284 (611)
T ss_dssp             E-EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGG
T ss_pred             E-EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCCCcc
Confidence            6 6689999999964 45555553       79999999999999999999999999 99999998876654431     


Q ss_pred             ------------------------------------CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 015198          258 ------------------------------------GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSS  301 (411)
Q Consensus       258 ------------------------------------~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~  301 (411)
                                                          ..|...|++++|+|||++|++++.|++|++||+.+++.......
T Consensus       285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~  364 (611)
T 1nr0_A          285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD  364 (611)
T ss_dssp             GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC
T ss_pred             ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeccc
Confidence                                                12778899999999999999999999999999998764321100


Q ss_pred             CCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCc
Q 015198          302 SLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGS  381 (411)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~  381 (411)
                                                                             .+...+..++|++++.+++++.|+.
T Consensus       365 -------------------------------------------------------~h~~~v~~~~~s~~~~l~s~s~d~~  389 (611)
T 1nr0_A          365 -------------------------------------------------------VHATMITGIKTTSKGDLFTVSWDDH  389 (611)
T ss_dssp             -------------------------------------------------------SCSSCEEEEEECTTSCEEEEETTTE
T ss_pred             -------------------------------------------------------CCcceEEEEEECCCCcEEEEEcCCc
Confidence                                                                   0113456678888899999999999


Q ss_pred             EEEEEEec
Q 015198          382 FYRCSFDP  389 (411)
Q Consensus       382 ~~~~~~~~  389 (411)
                      +++|.+..
T Consensus       390 v~~w~~~~  397 (611)
T 1nr0_A          390 LKVVPAGG  397 (611)
T ss_dssp             EEEECSSS
T ss_pred             eEEeecCC
Confidence            99997653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.7e-34  Score=264.19  Aligned_cols=294  Identities=14%  Similarity=0.152  Sum_probs=234.7

Q ss_pred             cccCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCcc---eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      ..+.+|.+.|++|+|+|+ +++|++|+ |+.|+|||+...+.   .....+.+|...+.++.|++++.++++++.|    
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d----  107 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD----  107 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT----
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc----
Confidence            457899999999999998 68999999 99999999976432   2334456788899999999999999999988    


Q ss_pred             CCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeE-EEeccCCCcceEEEccCCCce
Q 015198          113 PTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLH-QIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  187 (411)
                       +.|++|+........... +...+..+.+++++..++   .|+.+++||+....... ....+...+..+++.+++...
T Consensus       108 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  186 (340)
T 4aow_A          108 -GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP  186 (340)
T ss_dssp             -SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred             -ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence             999999999888877776 778888999999888777   68999999987654432 335566666777888877766


Q ss_pred             EEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE
Q 015198          188 VLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (411)
                      ++++ ++.|+.|++|+... +.+..+.+|...|++++|+|++++|++++.|+. |++||+++++.+..+..   ...|..
T Consensus       187 ~~~s-~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~---~~~v~~  261 (340)
T 4aow_A          187 IIVS-CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDG---GDIINA  261 (340)
T ss_dssp             EEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---SSCEEE
T ss_pred             EEEE-EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecC---CceEEe
Confidence            6665 66899999988765 566778899999999999999999999999999 99999999999988874   458999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccc
Q 015198          267 IALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF  346 (411)
Q Consensus       267 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (411)
                      +.|+|++.++ +++.|+.|+|||++++........+                                            
T Consensus       262 ~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------------------  296 (340)
T 4aow_A          262 LCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQE--------------------------------------------  296 (340)
T ss_dssp             EEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC--------------------------------------------
T ss_pred             eecCCCCcee-eccCCCEEEEEECCCCeEEEecccc--------------------------------------------
Confidence            9999987655 5667999999999887644321111                                            


Q ss_pred             ccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          347 SSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                         ............+..++|+++ +.|++++.||.|++|++..
T Consensus       297 ---~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          297 ---VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             ----------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             ---ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence               000112223356677899998 7788888999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8e-34  Score=260.39  Aligned_cols=280  Identities=12%  Similarity=0.094  Sum_probs=229.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcc---eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..+|.+.|.+++|+|++++|++++|+.|++|++.+.+.   ........+...+.++.|++++..+++++.+     +.|
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i  121 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STL  121 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----CcE
Confidence            34799999999999999999999999999999986432   2222223677889999999999888888887     999


Q ss_pred             EEEECCCCc--EEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          117 IIWDDHQSR--CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       117 ~vwd~~~~~--~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      ++||+.+++  ....+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+  .++.+++++..|+
T Consensus       122 ~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~  199 (337)
T 1gxr_A          122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA--SCIDISNDGTKLW  199 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEECTTSSEEE
T ss_pred             EEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCce--EEEEECCCCCEEE
Confidence            999999887  444454 788999999999988777   68999999999999999998877744  4555555667777


Q ss_pred             EecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198          191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (411)
                      + ++.||.|++|+...........+...+.+++|+|++++|++++.++. |++||+.+++.. .+..  |...|.+++|+
T Consensus       200 ~-~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~-~~~~--~~~~v~~~~~~  274 (337)
T 1gxr_A          200 T-GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKY-QLHL--HESCVLSLKFA  274 (337)
T ss_dssp             E-EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEE-EECC--CSSCEEEEEEC
T ss_pred             E-EecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeE-EEcC--CccceeEEEEC
Confidence            5 55899999999876555545568889999999999999999999999 999999888764 4555  78899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccccc
Q 015198          271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW  350 (411)
Q Consensus       271 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (411)
                      |++++|++++.||.|++||+.+++...                                                     
T Consensus       275 ~~~~~l~~~~~dg~i~~~~~~~~~~~~-----------------------------------------------------  301 (337)
T 1gxr_A          275 YCGKWFVSTGKDNLLNAWRTPYGASIF-----------------------------------------------------  301 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEE-----------------------------------------------------
T ss_pred             CCCCEEEEecCCCcEEEEECCCCeEEE-----------------------------------------------------
Confidence            999999999999999999998876431                                                     


Q ss_pred             ceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198          351 SFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~  388 (411)
                         .. .+...+..++|+++ +.|++++.||.+++|++-
T Consensus       302 ---~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          302 ---QS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ---EE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             ---Ee-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence               11 12345667889998 778888899999999873

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9e-36  Score=276.71  Aligned_cols=248  Identities=14%  Similarity=0.156  Sum_probs=197.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEE--eecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFR--RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ..+|...|++++|+|++++|+++.||.|+|||+.+.+....  .....|...+.++.|+|++..+++++.|     +.|+
T Consensus        90 ~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~  164 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVK  164 (357)
T ss_dssp             EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEE
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEE
Confidence            45789999999999999777655599999999987543322  2233677889999999999999999988     9999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      +||+.+++.+..+. |...|.+++|++++. +++   .|+.|++||+++++....+........+.++.++|++..++++
T Consensus       165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~  244 (357)
T 4g56_B          165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC  244 (357)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEE
Confidence            99999999999998 899999999999864 333   6899999999998887766554444455666666654333445


Q ss_pred             cCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198          193 GLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       193 g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (411)
                      |+.|+.|++|+.. .+.+..+.+|...|++++|+|++ ++|++++.|+. |+|||+++++.+..+ +  |...|++++|+
T Consensus       245 g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~-~--H~~~V~~vafs  320 (357)
T 4g56_B          245 GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDL-S--HRDFVTGVAWS  320 (357)
T ss_dssp             EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEEC-C--CSSCEEEEEEC
T ss_pred             eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEEC-C--CCCCEEEEEEe
Confidence            7789999998865 56788889999999999999987 58999999999 999999999887654 4  88899999999


Q ss_pred             C-CCCEEEEEeCCCcEEEEEccccccC
Q 015198          271 P-NVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       271 p-dg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      | |+++|++++.||+|++|++.+..+.
T Consensus       321 P~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          321 PLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             SSSTTEEEEEETTSCEEEEECC-----
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            8 8999999999999999999876543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.1e-34  Score=269.99  Aligned_cols=284  Identities=14%  Similarity=0.121  Sum_probs=223.3

Q ss_pred             ccccCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCC
Q 015198           37 TAFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPP  113 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d  113 (411)
                      .....+|.+.|++++|+|++ ++|++|+ |+.|+|||+.+........+..+...+.++.|++ ++..+++++.|     
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----  140 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----  140 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----
Confidence            34567899999999999999 9999999 9999999999866665555456888999999999 77899998888     


Q ss_pred             CeEEEEECCCCcEEEEEe----ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          114 TKVIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                      +.|++||+.+ ..+..+.    +...|.+++|+|++.+++   .|+.|++||+ +++.+..+..|...+  .++.+++++
T Consensus       141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v--~~~~~~~~~  216 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV--THAEFNPRC  216 (383)
T ss_dssp             TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE--EEEEECSSC
T ss_pred             CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE--EEEEECCCC
Confidence            9999999885 5555554    347899999999998888   6899999999 577888888887754  455555566


Q ss_pred             e-EEEEecCCCCeEEEEEcCC----cceEEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC-
Q 015198          187 S-VLACPGLQRGQVRIEHFGL----NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-  259 (411)
Q Consensus       187 ~-~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-  259 (411)
                      . +++ +|+.|+.|++|+...    ........|...|.+++|+| ++++|++++.|+. |++||+++++.+..+..+. 
T Consensus       217 ~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~  294 (383)
T 3ei3_B          217 DWLMA-TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPH  294 (383)
T ss_dssp             TTEEE-EEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCB
T ss_pred             CCEEE-EEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCccccccccccc
Confidence            6 555 467899999999875    33333347999999999999 9999999999999 9999999988776666421 


Q ss_pred             ----CC----------cceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCC
Q 015198          260 ----DR----------AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISP  325 (411)
Q Consensus       260 ----~~----------~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (411)
                          |.          ..+..++|+|++++  +++.|+.|+|||+.+++...                            
T Consensus       295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~----------------------------  344 (383)
T 3ei3_B          295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH----------------------------  344 (383)
T ss_dssp             CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE----------------------------
T ss_pred             cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceee----------------------------
Confidence                11          24455777777776  77899999999999887543                            


Q ss_pred             CCCCCCCCcccccccccCcccccccceEEEEe--CCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          326 STGANPGSSLSFMRGVLPKYFSSEWSFAQFHI--PEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                                                  .+..  ..+....++|++++.++++++||.|++|+++.
T Consensus       345 ----------------------------~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          345 ----------------------------QLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED  382 (383)
T ss_dssp             ----------------------------EECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred             ----------------------------eecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence                                        2221  12455667999996666666799999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.4e-34  Score=267.62  Aligned_cols=246  Identities=12%  Similarity=0.187  Sum_probs=202.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc------ceEEeecCCCCEEEEEEeccCC----e---EEEE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK------ETFRRDLKSGGFRIVEMLFRCN----I---LALV  103 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~---~~l~  103 (411)
                      ..+.+|.+.|++++|+|  ++|++|+ ||.|+||++++.+      ....  +..|...+.++.|+++    +   ..++
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS--HFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE--EECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE--EecCCCcEEEEEEecccccCCccccEEE
Confidence            45779999999999999  7999999 9999999998765      3333  3377788999999998    8   8888


Q ss_pred             ecCCCCCCCCCeEEEEECCCCcE-----EEEEe-e-----cCceeEEEEc----CCeEE-EE---EcCeEEEEEcCC---
Q 015198          104 GAGDNSQYPPTKVIIWDDHQSRC-----IGEFA-F-----RSDVRSVKLS----RDRIV-VV---LEHKIYVYSFVD---  161 (411)
Q Consensus       104 s~~~d~~~~d~~i~vwd~~~~~~-----~~~~~-~-----~~~i~~~~~~----~~~~~-~~---~dg~i~iwd~~~---  161 (411)
                      +++.|     +.|++||+.+++.     +..+. |     ...|.+++|+    |++.. ++   .|+.|++||+.+   
T Consensus        86 s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           86 TTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEcCC-----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence            88887     9999999988886     77776 6     5999999999    99887 66   689999999988   


Q ss_pred             ---ceeeE-----EEec-------cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEec---c---ccce
Q 015198          162 ---LKLLH-----QIET-------LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINA---H---DSHI  219 (411)
Q Consensus       162 ---~~~~~-----~~~~-------~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~---~---~~~i  219 (411)
                         ++.+.     .+..       +..  .+.++.+++++ ++++ |+.||.|++|+.. .+.+..+..   |   ...|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQ--FATSVDISERG-LIAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  236 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCC--CCCEEEECTTS-EEEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             ccccceeeccCcceeeeeeccccCCCC--CceEEEECCCc-eEEE-EeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence               76666     6644       444  44555666666 5554 7789999999876 566777888   8   9999


Q ss_pred             eEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEEEEeCCC-----------CCcceEEEEeCCCCCEEEEEeCCCcE
Q 015198          220 ACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWLAVASDKGTV  285 (411)
Q Consensus       220 ~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l~s~s~dg~I  285 (411)
                      .+++|+|++++|++++.|   +. |++||+++++.+..+....           |...|.+++|+|++++|++++.||.|
T Consensus       237 ~~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  315 (397)
T 1sq9_A          237 RSVKFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  315 (397)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             ceEEECCCCCEEEEEecCCCCce-EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence            999999999999999999   99 9999999999988887521           56789999999999999999999999


Q ss_pred             EEEEccccccCC
Q 015198          286 HIFSLRVRVVGE  297 (411)
Q Consensus       286 ~vwd~~~~~~~~  297 (411)
                      +|||+++++...
T Consensus       316 ~iwd~~~~~~~~  327 (397)
T 1sq9_A          316 RFWDVKTKERIT  327 (397)
T ss_dssp             EEEETTTTEEEE
T ss_pred             EEEEcCCCceeE
Confidence            999999887553

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.6e-34  Score=261.34  Aligned_cols=239  Identities=13%  Similarity=0.146  Sum_probs=202.2

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc--eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      ....|...|.+++|+|++++|++|+ |+.|++|++.+...  .....+.+|...+.++.|.+++. +++++.|     +.
T Consensus        92 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d-----~~  165 (340)
T 1got_B           92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD-----TT  165 (340)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT-----SC
T ss_pred             EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC-----Cc
Confidence            3467899999999999999999999 99999999976432  23334557777888888888877 5555656     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      |++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+..  +.++|++.+|++
T Consensus       166 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~--v~~~p~~~~l~s  243 (340)
T 1got_B          166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA--ICFFPNGNAFAT  243 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE--EEECTTSSEEEE
T ss_pred             EEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEE--EEEcCCCCEEEE
Confidence            9999999999999888 899999999999998877   6999999999999999999888875554  455556677775


Q ss_pred             ecCCCCeEEEEEcCCcc-eEEEe--ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198          192 PGLQRGQVRIEHFGLNM-IKLIN--AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~~-~~~~~--~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (411)
                       |+.||.|++|+..... +..+.  .+...|.+++|+|+|++|++|+.|+. |++||+.+++.+..+.+  |...|.+++
T Consensus       244 -~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~~~~--h~~~v~~~~  319 (340)
T 1got_B          244 -GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSCLG  319 (340)
T ss_dssp             -EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEEEE
T ss_pred             -EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEcccCcEeeEeec--CCCcEEEEE
Confidence             6689999999987543 33333  22347999999999999999999999 99999999999999988  888999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEE
Q 015198          269 LSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd  289 (411)
                      |+|+|++|++|+.|+.|+|||
T Consensus       320 ~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          320 VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-33  Score=253.83  Aligned_cols=280  Identities=14%  Similarity=0.127  Sum_probs=231.1

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      ....+.+|.+.|++++| +++++|++|+ ||.|++||+.+.......  ..+...+.++.|++++..+++++.|     +
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----g   81 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV--YTGQGFLNSVCYDSEKELLLFGGKD-----T   81 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE--EECSSCEEEEEEETTTTEEEEEETT-----S
T ss_pred             HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe--ecCCccEEEEEECCCCCEEEEecCC-----C
Confidence            34567899999999999 9999999999 999999999875544333  3677889999999999999999888     9


Q ss_pred             eEEEEECCCC---cEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          115 KVIIWDDHQS---RCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       115 ~i~vwd~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      .|++|++...   +.+..+. |...|.++.|+++....+ .|+.|++||  .++.+..+..+...+..+.+.+. ++..+
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~-~~~~l  158 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF-SENKF  158 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET-TTTEE
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC-CCCEE
Confidence            9999997654   5566666 899999999965543333 799999999  67888888888876666666552 33455


Q ss_pred             EEecCCCCeEEEEEcCCcceEEEec-cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198          190 ACPGLQRGQVRIEHFGLNMIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (411)
                      ++ ++.||.|++|+ ..+....+.. |...+.+++|+|++. |++++.|+. |++||+++++.+..+..  |...|.+++
T Consensus       159 ~~-~~~d~~i~i~d-~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~~~  232 (313)
T 3odt_A          159 LT-ASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYEG--HESFVYCIK  232 (313)
T ss_dssp             EE-EETTSCEEEEE-TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEEEE
T ss_pred             EE-EECCCCEEEEe-cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhhc--CCceEEEEE
Confidence            54 56899999998 4555666666 899999999999998 899999999 99999999999999987  888999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccc
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS  348 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (411)
                      |+|++ .|++++.||.|++||+++++..                                                    
T Consensus       233 ~~~~~-~l~~~~~dg~v~iwd~~~~~~~----------------------------------------------------  259 (313)
T 3odt_A          233 LLPNG-DIVSCGEDRTVRIWSKENGSLK----------------------------------------------------  259 (313)
T ss_dssp             ECTTS-CEEEEETTSEEEEECTTTCCEE----------------------------------------------------
T ss_pred             EecCC-CEEEEecCCEEEEEECCCCcee----------------------------------------------------
Confidence            99999 5889999999999999987643                                                    


Q ss_pred             ccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          349 EWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                          ..+..+...+..++|++++.+++++.||.+++|++..
T Consensus       260 ----~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          260 ----QVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             ----EEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred             ----EEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence                2455555677788999998899999999999999886

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-33  Score=285.78  Aligned_cols=303  Identities=14%  Similarity=0.200  Sum_probs=228.3

Q ss_pred             cccCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcc---eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      ..+.+|.+.|++++|+|++ ++|++|+ |+.|+||++.....   .....+.+|...+.++.|++++.++++++.|    
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D----  451 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD----  451 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT----
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC----
Confidence            4577999999999999875 7899999 99999999975432   2233455788889999999999999999988    


Q ss_pred             CCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEE---eccCCCcceEEEccCCC
Q 015198          113 PTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLCCLSHHSS  185 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~  185 (411)
                       +.|++||+.+++.+..+. |...|.+++|+|++..++   .|+.|++||+.........   ..|...+..++++++..
T Consensus       452 -g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  530 (694)
T 3dm0_A          452 -GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL  530 (694)
T ss_dssp             -SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred             -CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence             999999999999998887 999999999999998777   6999999998654333222   23444445555555543


Q ss_pred             ceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcce
Q 015198          186 TSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (411)
Q Consensus       186 ~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (411)
                      ...+++ |+.|+.|++|+... +....+.+|...|++++|+|+|++|++++.|+. |++||+.+++.+..+.   +...|
T Consensus       531 ~~~l~s-~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~---~~~~v  605 (694)
T 3dm0_A          531 QPTIVS-ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLE---ANSVI  605 (694)
T ss_dssp             SCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCB---CSSCE
T ss_pred             cceEEE-EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEec---CCCcE
Confidence            345654 67899999999765 556778899999999999999999999999999 9999999999887765   44579


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCc
Q 015198          265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK  344 (411)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (411)
                      .+++|+|++.+|++++. +.|+|||+++++.......+..                        .. .......+   + 
T Consensus       606 ~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~------------------------~~-~~~~~~~~---~-  655 (694)
T 3dm0_A          606 HALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLK------------------------AE-AEKADNSG---P-  655 (694)
T ss_dssp             EEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------------------------------
T ss_pred             EEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccc------------------------cc-cccccccc---c-
Confidence            99999999998887765 5599999999876543222200                        00 00000000   0 


Q ss_pred             ccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198          345 YFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~  388 (411)
                              ...+........++|+++ ..|++++.||.|++|.+.
T Consensus       656 --------~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          656 --------AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             -------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             --------ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence                    000000112456789998 788888899999999875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.5e-34  Score=262.89  Aligned_cols=304  Identities=10%  Similarity=0.128  Sum_probs=232.5

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEE-EEe----CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC---eEEEEecCCCCC
Q 015198           39 FSDVDEIELISVSWNQDYGCFA-AGT----SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN---ILALVGAGDNSQ  110 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la-~g~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~  110 (411)
                      ...+|.+.|.+++|+|++..++ +|+    |+.|+||++.+.+......+ .+...+.++.|+++   +..+++++.|  
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~d--   89 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFG--   89 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETT--
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCC--
Confidence            3467999999999999997665 443    79999999998665444333 56778899999998   5888888887  


Q ss_pred             CCCCeEEEEECCCCc-EEEEEe-ecCceeEEEE------cCCeEEEE---EcCeEEEEEcCCce-eeEEEeccCC--Ccc
Q 015198          111 YPPTKVIIWDDHQSR-CIGEFA-FRSDVRSVKL------SRDRIVVV---LEHKIYVYSFVDLK-LLHQIETLAN--LRG  176 (411)
Q Consensus       111 ~~d~~i~vwd~~~~~-~~~~~~-~~~~i~~~~~------~~~~~~~~---~dg~i~iwd~~~~~-~~~~~~~~~~--~~~  176 (411)
                         +.|++||+.+++ .+..+. |...|.++.|      +|++..++   .|+.|++||+++++ .+..+..+..  ...
T Consensus        90 ---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (357)
T 3i2n_A           90 ---GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD  166 (357)
T ss_dssp             ---SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred             ---CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence               999999999987 777777 8999999955      67887777   68999999999886 6777765443  123


Q ss_pred             eEEEc----cCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecC---CCCEEEEEcCCCeEEEEEECCCC
Q 015198          177 LCCLS----HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTL---DGLLLATASTRGTLIRIFNTVDG  249 (411)
Q Consensus       177 ~~~~~----~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp---~g~~l~s~s~dg~~I~vwd~~~~  249 (411)
                      +.++.    +++++.++++ ++.||.|++|+...........|...|.+++|+|   ++.+|++++.|+. |++||++++
T Consensus       167 v~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~  244 (357)
T 3i2n_A          167 CWTVAFGNAYNQEERVVCA-GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRTQ  244 (357)
T ss_dssp             EEEEEEECCCC-CCCEEEE-EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEEE
T ss_pred             eEEEEEEeccCCCCCEEEE-EccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcCC
Confidence            33443    5677778776 5689999999998877777788999999999999   9999999999999 999999877


Q ss_pred             ceEEEEe-----CCCCCcceEEEEeCCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCcccc
Q 015198          250 TRLQEVR-----RGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLI  323 (411)
Q Consensus       250 ~~~~~~~-----~~~~~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (411)
                      +.+..+.     .  |...|.+++|+|+++ +|++++.||.|++||++++.........                     
T Consensus       245 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------  301 (357)
T 3i2n_A          245 HPTKGFASVSEKA--HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE---------------------  301 (357)
T ss_dssp             ETTTEEEEEEEEC--CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT---------------------
T ss_pred             CcccceeeeccCC--CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC---------------------
Confidence            6544443     5  788999999999998 8999999999999999987654211111                     


Q ss_pred             CCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEE-EEEeCCcEEEEEEec
Q 015198          324 SPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVV-IVSMDGSFYRCSFDP  389 (411)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~dg~~~~~~~~~  389 (411)
                           +...           ...........+..+...+..++|+++ ..|+ +++.||.+++|++..
T Consensus       302 -----g~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          302 -----GIEM-----------GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             -----SCCC-----------CCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             -----CCcc-----------ccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence                 0000           000011223455556677888999998 5566 578899999999875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=266.87  Aligned_cols=296  Identities=16%  Similarity=0.171  Sum_probs=232.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      +|.+.|++++|+|++++|++|+ |+.|++|+.. .....  .+..+...+.++.|++++..+++++.|     +.|++||
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd  177 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GALLN--VLNFHRAPIVSVKWNKDGTHIISMDVE-----NVTILWN  177 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEE--EECCCCSCEEEEEECTTSSEEEEEETT-----CCEEEEE
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeee--eccCCCccEEEEEECCCCCEEEEEecC-----CeEEEEE
Confidence            4788999999999999999999 9999999943 23332  344788889999999999888888887     9999999


Q ss_pred             CCCCcEEEEEe-ecCc---------------eeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEcc
Q 015198          121 DHQSRCIGEFA-FRSD---------------VRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH  182 (411)
Q Consensus       121 ~~~~~~~~~~~-~~~~---------------i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (411)
                      +.+++.+..+. +...               +.++.|++++.+++  .++.|++||+.+++.+..+..|...+..++++ 
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-  256 (425)
T 1r5m_A          178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-  256 (425)
T ss_dssp             TTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-
T ss_pred             CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC-
Confidence            99999988887 4444               99999999988777  79999999999999988888887755555554 


Q ss_pred             CCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC
Q 015198          183 HSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR  261 (411)
Q Consensus       183 ~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~  261 (411)
                       +++.+|++ ++.|+.|++|+... +.+..+..|...|.+++|+|++ +|++++.|+. |++||+++++.+..+..  |.
T Consensus       257 -~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~  330 (425)
T 1r5m_A          257 -DTNKLLLS-ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALSIV--DG  330 (425)
T ss_dssp             -TTTTEEEE-EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEEEC--TT
T ss_pred             -CCCCEEEE-EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEeccc--CC
Confidence             45567765 56899999998654 5677788899999999999999 9999999999 99999999999988887  77


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccc
Q 015198          262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGV  341 (411)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (411)
                      ..|.+++|+|++++|++++.||.|++||+++++........                           .....+..    
T Consensus       331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~---------------------------~~~~~~~~----  379 (425)
T 1r5m_A          331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG---------------------------NRDGILNP----  379 (425)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------------------------------------C----
T ss_pred             ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeec---------------------------ccccccCc----
Confidence            89999999999999999999999999999988732100000                           00000000    


Q ss_pred             cCcccccccceEEEEeCCC--ceEEEEEccC-CEEEEEEeCCcEEEEEEe
Q 015198          342 LPKYFSSEWSFAQFHIPEV--THFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~dg~~~~~~~~  388 (411)
                           ........+..+..  .+..++|+++ ..|++++.||.|++|.++
T Consensus       380 -----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          380 -----LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             -----EECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             -----ccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence                 00112344555544  7888999998 678889999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1e-33  Score=263.54  Aligned_cols=241  Identities=12%  Similarity=0.129  Sum_probs=202.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ...|.++|++++|+|++++|++|+ |+.|++|++++.+......+..|...+.++.|++++..+++++.|     +.|++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~v   78 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYV   78 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEE
Confidence            345899999999999999999998 999999999876522333455788889999999999889998887     99999


Q ss_pred             EECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCcee---eEEE-eccCCCcceEEEccCCCceE
Q 015198          119 WDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL---LHQI-ETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       119 wd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~  188 (411)
                      ||+.+++....+.   |...|.+++|+|++.+++   .|+.|++||++.++.   ...+ ..|..  .+.++.+++++.+
T Consensus        79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~  156 (372)
T 1k8k_C           79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS--TVLSLDWHPNSVL  156 (372)
T ss_dssp             EEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS--CEEEEEECTTSSE
T ss_pred             EECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC--CeeEEEEcCCCCE
Confidence            9998887665543   788999999999998877   689999999987653   3333 33444  4566666667777


Q ss_pred             EEEecCCCCeEEEEEcC-------------------CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC
Q 015198          189 LACPGLQRGQVRIEHFG-------------------LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~-------------------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (411)
                      |++ |+.||.|++|+..                   ++.+..+..|...|.+++|+|++++|++++.|+. |++||++++
T Consensus       157 l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~  234 (372)
T 1k8k_C          157 LAA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKK  234 (372)
T ss_dssp             EEE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGT
T ss_pred             EEE-EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCC
Confidence            776 5689999999853                   4667777899999999999999999999999999 999999999


Q ss_pred             ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      +.+..+..  |...|.+++|+|++++|+++ .|+.|++|++++
T Consensus       235 ~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          235 MAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             TEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             ceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            99999987  77899999999999988877 899999999998

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1e-33  Score=256.07  Aligned_cols=247  Identities=13%  Similarity=0.118  Sum_probs=196.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC--CeEEEEecCCCCCCCCCe
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTK  115 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~d~~  115 (411)
                      ...+|.+.|++++|+|+|++||+|+ |+.|+||+++.........+.+|...+.++.|++  ++..+++++.|     ++
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-----~~   78 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GK   78 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----TE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC-----CE
Confidence            3678999999999999999999999 9999999997533223334558888899999975  37789999988     99


Q ss_pred             EEEEECCCCc--EEEEEe-ecCceeEEEEcCC--eEEEE---EcCeEEEEEcCCcee--eEEEeccCCCcceEEEccCC-
Q 015198          116 VIIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHS-  184 (411)
Q Consensus       116 i~vwd~~~~~--~~~~~~-~~~~i~~~~~~~~--~~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~-  184 (411)
                      |++||+.+++  .+..+. |...|.+++|+|+  +.+++   .|+.|++||++++..  ...+..|...+..++++++. 
T Consensus        79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  158 (297)
T 2pm7_B           79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (297)
T ss_dssp             EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence            9999998874  455555 8899999999997  65555   799999999987532  35567777755555665542 


Q ss_pred             ----------CceEEEEecCCCCeEEEEEcCCc-----ceEEEeccccceeEEEecCCC---CEEEEEcCCCeEEEEEEC
Q 015198          185 ----------STSVLACPGLQRGQVRIEHFGLN-----MIKLINAHDSHIACFTLTLDG---LLLATASTRGTLIRIFNT  246 (411)
Q Consensus       185 ----------~~~~l~~~g~~dg~i~i~~~~~~-----~~~~~~~~~~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~  246 (411)
                                ++.+|++ |+.|+.|++|+....     ....+.+|...|.+++|+|++   .+|++++.|+. |+|||+
T Consensus       159 ~~~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~  236 (297)
T 2pm7_B          159 EEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQ  236 (297)
T ss_dssp             -----------CCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEE
T ss_pred             cccccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEe
Confidence                      2346665 678999999987642     456778999999999999985   89999999999 999999


Q ss_pred             CCCc--e-EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          247 VDGT--R-LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       247 ~~~~--~-~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      +++.  . ...+....|...|.+++|+|+|++|++++.|+.|+||+...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            7753  1 22332233678999999999999999999999999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5e-33  Score=261.70  Aligned_cols=238  Identities=16%  Similarity=0.214  Sum_probs=204.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      ...|.+++|+|+|++|++|+ |+.|+|||+++.+....  +.+|...+.++.|++++..+++++.|     +.|++||+.
T Consensus       123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~  195 (393)
T 1erj_A          123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLR  195 (393)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETT
T ss_pred             ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECC
Confidence            34599999999999999999 99999999987554333  45788889999999999999999988     999999999


Q ss_pred             CCcEEEEEeecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEE-------eccCCCcceEEEccCCCceEEEE
Q 015198          123 QSRCIGEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQI-------ETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       123 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      ++++...+.+...+.+++|+| ++.+++   .|+.|++||+++++.+..+       ..|..  .+.++.+++++.+|++
T Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s  273 (393)
T 1erj_A          196 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--SVYSVVFTRDGQSVVS  273 (393)
T ss_dssp             TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS--CEEEEEECTTSSEEEE
T ss_pred             CCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC--CEEEEEECCCCCEEEE
Confidence            999999898889999999999 787777   6999999999998887776       23444  4556666777778875


Q ss_pred             ecCCCCeEEEEEcCC-------------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC
Q 015198          192 PGLQRGQVRIEHFGL-------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~-------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (411)
                       |+.|+.|++|+...             .+...+.+|...|.+++|+|++++|++|+.|+. |++||+.+++.+..+.+ 
T Consensus       274 -~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~~~~~~l~~-  350 (393)
T 1erj_A          274 -GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQG-  350 (393)
T ss_dssp             -EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEEC-
T ss_pred             -EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCCeEEEEECC-
Confidence             66899999998753             234567889999999999999999999999999 99999999999999988 


Q ss_pred             CCCcceEEEEeCC------CCCEEEEEeCCCcEEEEEccccc
Q 015198          259 VDRAEIYSIALSP------NVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       259 ~~~~~v~~l~~sp------dg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                       |...|.+++|++      ++++|++|+.||+|+||+++..+
T Consensus       351 -h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~  391 (393)
T 1erj_A          351 -HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA  391 (393)
T ss_dssp             -CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred             -CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence             888999999886      68899999999999999997653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.6e-32  Score=270.96  Aligned_cols=276  Identities=16%  Similarity=0.218  Sum_probs=231.9

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+|...|.+++|+|++++|++++ |+.|++|+.+. +. . ..+..|...+.++.|+|++..+++++.|     +.|
T Consensus       256 ~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~-~-~~~~~h~~~v~~~~~~~~~~~l~t~~~d-----~~i  327 (577)
T 2ymu_A          256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QL-L-QTLTGHSSSVWGVAFSPDGQTIASASDD-----KTV  327 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CE-E-EEECCCSSCEEEEEECTTSSEEEEEETT-----SCE
T ss_pred             EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cE-E-EEEecCCCCeEEEEECCCCCEEEEEeCC-----CeE
Confidence            45678999999999999999999999 99999999764 22 2 2345788889999999999999999888     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      ++||... +.+..+. |...+.+++|+|++..++   .|+.|++||. +++.+..+..|...+  .++.+++++.+|++ 
T Consensus       328 ~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v--~~~~~s~dg~~l~~-  402 (577)
T 2ymu_A          328 KLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV--RGVAFSPDGQTIAS-  402 (577)
T ss_dssp             EEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCE--EEEEECTTSSCEEE-
T ss_pred             EEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCe--EEEEECCCCCEEEE-
Confidence            9999654 4455555 889999999999998887   6899999995 678888888887754  45555666777776 


Q ss_pred             cCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198          193 GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (411)
Q Consensus       193 g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (411)
                      ++.|+.|++|+.+++.+..+.+|...|.+++|+|++++|++++.|+. |++||. +++.+..+..  |...|.+++|+||
T Consensus       403 ~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-v~~w~~-~~~~~~~~~~--~~~~v~~~~~spd  478 (577)
T 2ymu_A          403 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFSPD  478 (577)
T ss_dssp             EETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEECTT
T ss_pred             EeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-EEEEEC-CCCEEEEEcC--CCCCEEEEEEcCC
Confidence            56899999999999999999999999999999999999999999999 999996 6788888888  8889999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccce
Q 015198          273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF  352 (411)
Q Consensus       273 g~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (411)
                      +++|++++.|+.|++||.. ++..                                                        
T Consensus       479 ~~~las~~~d~~i~iw~~~-~~~~--------------------------------------------------------  501 (577)
T 2ymu_A          479 GQTIASASDDKTVKLWNRN-GQLL--------------------------------------------------------  501 (577)
T ss_dssp             SCEEEEEETTSEEEEEETT-SCEE--------------------------------------------------------
T ss_pred             CCEEEEEeCCCEEEEEcCC-CCEE--------------------------------------------------------
Confidence            9999999999999999953 3322                                                        


Q ss_pred             EEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEE
Q 015198          353 AQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (411)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~  387 (411)
                      ..+.-+...+..++|+++ ..|++++.||.|++|+.
T Consensus       502 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            233444456778899998 67888888999999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.3e-33  Score=258.55  Aligned_cols=285  Identities=13%  Similarity=0.170  Sum_probs=223.9

Q ss_pred             ccCCCCCCeEEEEEcCC----CCEEE-EEeCCcEEEEecCCCcceEEeec---CCCCEEEEEEeccCC----eEEEEecC
Q 015198           39 FSDVDEIELISVSWNQD----YGCFA-AGTSCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCN----ILALVGAG  106 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~----g~~la-~g~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~l~s~~  106 (411)
                      ...+|.++|++++|+|+    ...++ ++.++.|+||++.+.+.......   ..+...+.++.|+++    +.++++++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            35689999999999984    33444 44488999999987554333221   125567888889887    77888888


Q ss_pred             CCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEE---eccCCCcceE
Q 015198          107 DNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLC  178 (411)
Q Consensus       107 ~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~  178 (411)
                      .|     +.|++||+.+++.+..+. |...|.+++|+| ++.+++   .|+.|++||+++++.+..+   ..|..  .+.
T Consensus        93 ~d-----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~  165 (366)
T 3k26_A           93 SR-----GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD--EVL  165 (366)
T ss_dssp             TT-----CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS--CEE
T ss_pred             CC-----CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC--cee
Confidence            87     999999999999999998 999999999999 777776   6899999999999998888   45655  455


Q ss_pred             EEccCCCceEEEEecCCCCeEEEEEcCCcc-e----------------------------EEEeccccceeEEEecCCCC
Q 015198          179 CLSHHSSTSVLACPGLQRGQVRIEHFGLNM-I----------------------------KLINAHDSHIACFTLTLDGL  229 (411)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-~----------------------------~~~~~~~~~i~~l~~sp~g~  229 (411)
                      ++.+++++.+|++ ++.||.|++|+..... .                            .....|...|.+++|+  ++
T Consensus       166 ~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~  242 (366)
T 3k26_A          166 SADYDLLGEKIMS-CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD  242 (366)
T ss_dssp             EEEECTTSSEEEE-EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred             EEEECCCCCEEEE-ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence            5666667777776 5589999999877521 1                            1223399999999998  77


Q ss_pred             EEEEEcCCCeEEEEEECCCCce--------------EEEEeCCCCCcceEEEEeCCC--CCEEEEEeCCCcEEEEEcccc
Q 015198          230 LLATASTRGTLIRIFNTVDGTR--------------LQEVRRGVDRAEIYSIALSPN--VQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       230 ~l~s~s~dg~~I~vwd~~~~~~--------------~~~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~I~vwd~~~~  293 (411)
                      +|++++.|+. |++||+.+++.              +..+..  |...|++++|+|+  +++|++++.||.|++||++++
T Consensus       243 ~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          243 LILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             EEEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             EEEEEecCCE-EEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence            9999999999 99999987754              667776  7788999999999  999999999999999999987


Q ss_pred             ccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeC--CCceEEEEEccC-
Q 015198          294 VVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIP--EVTHFIAAFGSQ-  370 (411)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-  370 (411)
                      +....                                                    ....+..+  ...+..++|+++ 
T Consensus       320 ~~~~~----------------------------------------------------~~~~~~~~~~~~~v~~~~~s~~~  347 (366)
T 3k26_A          320 DPHKA----------------------------------------------------KCTTLTHHKCGAAIRQTSFSRDS  347 (366)
T ss_dssp             SGGGC----------------------------------------------------EEEEECCTTCCSCEEEEEECTTS
T ss_pred             CCccc----------------------------------------------------cceEEcccccCCceEEEEeCCCC
Confidence            64320                                                    01122222  356778899998 


Q ss_pred             CEEEEEEeCCcEEEEEEe
Q 015198          371 NTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       371 ~~~~~~~~dg~~~~~~~~  388 (411)
                      +.|++++.||.|++|++.
T Consensus       348 ~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          348 SILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SEEEEEETTSEEEEEEC-
T ss_pred             CeEEEEeCCCEEEEEEec
Confidence            778888899999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.2e-33  Score=256.94  Aligned_cols=249  Identities=16%  Similarity=0.180  Sum_probs=197.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ..+|...|.+++|+|++++|++|+ |+.|+||++..........+.+|...+.++.|+|++..+++++.|     +.|++
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D-----~~v~i  131 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWV  131 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC-----CeEEE
Confidence            468999999999999999999999 999999999875544445566888899999999999999999988     99999


Q ss_pred             EECCCCc---EEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce--eeEEEeccCCCcceEEEccCCCceEE
Q 015198          119 WDDHQSR---CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       119 wd~~~~~---~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      ||+.++.   ++..+. |...|.+++|+|++.+++   .|+.|++||+++++  +...+..|..  .+.++++++++.+|
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~--~v~~l~~sp~g~~l  209 (345)
T 3fm0_A          132 WEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES--TVWSLAFDPSGQRL  209 (345)
T ss_dssp             EEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECTTSSEE
T ss_pred             EECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC--ceEEEEECCCCCEE
Confidence            9988764   344454 889999999999998887   69999999998775  3456777776  45556666677788


Q ss_pred             EEecCCCCeEEEEEcCC----------------cceEEEec-cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc--
Q 015198          190 ACPGLQRGQVRIEHFGL----------------NMIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--  250 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~----------------~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--  250 (411)
                      ++ |+.|+.|++|+...                .++..+.+ |...|.+++|+|++..|++++.|+. |++|+...+.  
T Consensus       210 ~s-~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~  287 (345)
T 3fm0_A          210 AS-CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSDP  287 (345)
T ss_dssp             EE-EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSCT
T ss_pred             EE-EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCCc
Confidence            76 66899999997521                12333444 8889999999999999999999999 9999987542  


Q ss_pred             --eEEEE---eCCCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEEccccccCC
Q 015198          251 --RLQEV---RRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       251 --~~~~~---~~~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                        ....+   ....|...|++++|+|++ .+|++++.||+|++|++.++++..
T Consensus       288 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          288 QQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             TSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             ceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence              11111   112278899999999998 499999999999999999988653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-34  Score=269.92  Aligned_cols=241  Identities=11%  Similarity=0.078  Sum_probs=189.5

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ...+.++|++++|+|++++|++|+ |+.|+||++.+........+..|...+.++.|++++.++++++.|     +.|++
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~v   81 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYV   81 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEE
Confidence            344678999999999999999998 999999999875323444466788899999999999999999988     99999


Q ss_pred             EECCCCc---EEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce---eeEEEec-cCCCcceEEEccCCCce
Q 015198          119 WDDHQSR---CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK---LLHQIET-LANLRGLCCLSHHSSTS  187 (411)
Q Consensus       119 wd~~~~~---~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~  187 (411)
                      ||+.+++   ....+. |...|.+++|+|++.+++   .|+.|++||+++++   ....+.. |..  .+.++.+++++.
T Consensus        82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~  159 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS--TILSLDWHPNNV  159 (377)
T ss_dssp             C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS--CEEEEEECTTSS
T ss_pred             EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC--CeEEEEEcCCCC
Confidence            9998877   444444 899999999999988777   68999999998876   4667766 665  455556666777


Q ss_pred             EEEEecCCCCeEEEEEcC-------------------CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198          188 VLACPGLQRGQVRIEHFG-------------------LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~-------------------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (411)
                      +|++ |+.|+.|++|+..                   ++.+..+ .|...|.+++|+|++++|++++.|+. |++||+.+
T Consensus       160 ~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~  236 (377)
T 3dwl_C          160 LLAA-GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSA  236 (377)
T ss_dssp             EEEE-EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECS
T ss_pred             EEEE-EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCC
Confidence            7776 6689999999974                   3445555 89999999999999999999999999 99999999


Q ss_pred             Cce----EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          249 GTR----LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       249 ~~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      ++.    +..+..  |...|.+++|+|++++|++++.++ +.+|+...+
T Consensus       237 ~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~~~~  282 (377)
T 3dwl_C          237 PEQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYS-PILLQGNES  282 (377)
T ss_dssp             TTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSS-EEEECCCC-
T ss_pred             CCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCc-EEEEEeCCC
Confidence            987    677777  788999999999999999987666 557777643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=259.96  Aligned_cols=279  Identities=15%  Similarity=0.182  Sum_probs=226.7

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEe-CCcEEEEec----CCCcc------eEEee--cCC------CCEEEEEEeccCCeE
Q 015198           41 DVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNC----EPFKE------TFRRD--LKS------GGFRIVEMLFRCNIL  100 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~-~la~g~-dg~i~iw~~----~~~~~------~~~~~--~~~------~~~~~~~~~~~~~~~  100 (411)
                      ..|.+.|++++|+|+++ +|++|+ |+.|++|++    .+.+.      .....  +..      +...+.++.|++++.
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            34668999999999999 999999 999999999    76552      22211  111      456899999999999


Q ss_pred             EEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCC--
Q 015198          101 ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANL--  174 (411)
Q Consensus       101 ~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~--  174 (411)
                      ++++++.|     +.|++|| .+++.+..+. |...|.+++|+|++.+++   .|+.|++||+.+++.+..+..+...  
T Consensus       122 ~l~~~~~d-----g~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          122 SIVTGVEN-----GELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             EEEEEETT-----SCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred             EEEEEeCC-----CeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence            99998887     9999999 7788888887 899999999999998777   6899999999999999888776654  


Q ss_pred             -------------cceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeE
Q 015198          175 -------------RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTL  240 (411)
Q Consensus       175 -------------~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~  240 (411)
                                   +..+.+.+  ++. ++ +++.+|.|++|+... +.+..+..|...|.+++|+|++++|++++.|+. 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~--~~~-~~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-  270 (425)
T 1r5m_A          196 SINAENHSGDGSLGVDVEWVD--DDK-FV-IPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT-  270 (425)
T ss_dssp             ----------CCCBSCCEEEE--TTE-EE-EECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC-
T ss_pred             ceeeccccCCcceeeEEEEcC--CCE-EE-EEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE-
Confidence                         44445544  444 44 356899999988765 566778899999999999999999999999999 


Q ss_pred             EEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCc
Q 015198          241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD  320 (411)
Q Consensus       241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (411)
                      |++||+++++.+..+..  |...|.+++|+|++ +|++++.|+.|++||+++++...                       
T Consensus       271 i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~-----------------------  324 (425)
T 1r5m_A          271 LRIWHGGNGNSQNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA-----------------------  324 (425)
T ss_dssp             EEEECSSSBSCSEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE-----------------------
T ss_pred             EEEEECCCCccceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE-----------------------
Confidence            99999999998888877  78899999999999 99999999999999998876432                       


Q ss_pred             cccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          321 TLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                                       .+..+...+..++|+++ +.|++++.||.|++|++..
T Consensus       325 ---------------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          325 ---------------------------------LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             ---------------------------------EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             ---------------------------------ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence                                             33444456778899998 7788888899999999885

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1e-32  Score=250.38  Aligned_cols=244  Identities=14%  Similarity=0.166  Sum_probs=205.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      .....|..+|.+++|+|++++|++|+ |+.|++||+.+.+....  +..|...+.++.|+|++.++++++.|     ++|
T Consensus        49 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sgs~D-----~~v  121 (304)
T 2ynn_A           49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTKPYVLSGSDD-----LTV  121 (304)
T ss_dssp             EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETT-----SCE
T ss_pred             EEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE--EeCCCCcEEEEEEcCCCCEEEEECCC-----CeE
Confidence            34567999999999999999999999 99999999998665544  34788889999999999999999988     999


Q ss_pred             EEEECCCCcE-EEEEe-ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEec-cCCCcceEEEccCCCceEE
Q 015198          117 IIWDDHQSRC-IGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       117 ~vwd~~~~~~-~~~~~-~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l  189 (411)
                      ++||++++.. ...+. |...|.+++|+| ++..++   .|+.|++||+++++....+.. +...+..+.+.+.+++.+|
T Consensus       122 ~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (304)
T 2ynn_A          122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (304)
T ss_dssp             EEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEE
T ss_pred             EEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEE
Confidence            9999988744 45555 899999999999 455555   699999999988776666643 4455667778887787788


Q ss_pred             EEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198          190 ACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (411)
                      ++ |+.|+.|++|+... +++..+.+|...|.+++|+|++.+|++|+.||. |++||+.+++.+..+..  +...+++++
T Consensus       202 ~s-~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~~~--~~~~~~~~~  277 (304)
T 2ynn_A          202 IT-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNV--GLERSWCIA  277 (304)
T ss_dssp             EE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCCEEEEECC--SSSSEEEEE
T ss_pred             EE-EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCe-EEEEECCCCceeeeccC--CCccEEEEE
Confidence            76 66899999998764 667889999999999999999999999999999 99999999999999987  777999999


Q ss_pred             eCCCCC--EEEEEeCCCcEEEEEcccc
Q 015198          269 LSPNVQ--WLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       269 ~spdg~--~l~s~s~dg~I~vwd~~~~  293 (411)
                      |+|++.  +|++|+.|| +.+|++.+.
T Consensus       278 ~~~~~~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          278 THPTGRKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             ECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred             ECCCCCceEEEEecCCc-eEEEEeccC
Confidence            999875  577777666 888888753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.7e-34  Score=272.40  Aligned_cols=288  Identities=12%  Similarity=0.052  Sum_probs=216.3

Q ss_pred             ccCCCCCCeEEEEEcC-CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCe
Q 015198           39 FSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTK  115 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~-~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~  115 (411)
                      ...+|...|+||+|+| ++++||+|+ ||.|+|||+++........+.+|...|.++.|+| ++..|++++.|     ++
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-----~~  188 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME-----GT  188 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-----SC
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-----CE
Confidence            3457889999999999 467999999 9999999998766655555667888999999997 67788999988     99


Q ss_pred             EEEEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          116 VIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      |++||++++.......   +...+.+++|+|++.+++   .||.|++||++. +.+..+..|...+..+++  ++++..+
T Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~--~p~~~~~  265 (435)
T 4e54_B          189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVAL--NPCCDWF  265 (435)
T ss_dssp             EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEE--CTTCSSE
T ss_pred             EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeee--cCCCceE
Confidence            9999987765443333   345678999999998887   689999999864 566677778775555544  4444444


Q ss_pred             EEecCCCCeEEEEEcCCc----ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC----
Q 015198          190 ACPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR----  261 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~~----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~----  261 (411)
                      +++|+.|+.|++|+....    ......+|...|++++|+|+|++|++++.|+. |+|||+.+++....+..+.+.    
T Consensus       266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~  344 (435)
T 4e54_B          266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQH  344 (435)
T ss_dssp             EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSS
T ss_pred             EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEeccccccccc
Confidence            445778999999987642    23334679999999999999999999999999 999999999888777653221    


Q ss_pred             cceEEEEeCCCCCEEEEEe------------CCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCC
Q 015198          262 AEIYSIALSPNVQWLAVAS------------DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGA  329 (411)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s------------~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (411)
                      ..+....|+|++.+++++.            .++.|++||+.+++....+..+                           
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~---------------------------  397 (435)
T 4e54_B          345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP---------------------------  397 (435)
T ss_dssp             SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS---------------------------
T ss_pred             ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC---------------------------
Confidence            1234456777777776664            2357999999888754211100                           


Q ss_pred             CCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          330 NPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                                                 -......+++|+|++.+++++.||.|++|++.+
T Consensus       398 ---------------------------~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~  430 (435)
T 4e54_B          398 ---------------------------ESSGISSLNEFNPMGDTLASAMGYHILIWSQQE  430 (435)
T ss_dssp             ---------------------------SCCCCCCEEEECTTSSCEEEECSSEEEECCCC-
T ss_pred             ---------------------------CCCcEEEEEEECCCCCEEEEEcCCcEEEEECCc
Confidence                                       001233456899998888888899999998876

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2e-32  Score=250.27  Aligned_cols=241  Identities=9%  Similarity=0.162  Sum_probs=199.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+|...|.+++|+|++++|++|+ |+.|+|||+.+.+....  +.+|...+.++.|++++..+++++.|     +.|+
T Consensus        60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D-----~~i~  132 (319)
T 3frx_A           60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRD-----KTIK  132 (319)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETT-----SCEE
T ss_pred             EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCC-----CeEE
Confidence            4678999999999999999999999 99999999998654433  44788889999999999999999988     9999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCCeE------EEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRI------VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~------~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      +||++ ++++..+. |...|.++.+.|...      .++   .|+.|++||+++++....+..|...+  .++.++|++.
T Consensus       133 vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v--~~~~~sp~g~  209 (319)
T 3frx_A          133 VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI--NTLTASPDGT  209 (319)
T ss_dssp             EEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCE--EEEEECTTSS
T ss_pred             EEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcE--EEEEEcCCCC
Confidence            99986 45666665 899999999998643      444   79999999999999988888888754  4555566777


Q ss_pred             EEEEecCCCCeEEEEEcCCcc-eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC------C
Q 015198          188 VLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV------D  260 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~------~  260 (411)
                      +|++ |+.||.|++|+..... +..+. +...|.+++|+|++.+|++++. +. +++|++..+..+..+....      +
T Consensus       210 ~l~s-~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~-~~-i~v~~~~~~~~~~~~~~~~~~~~~~~  285 (319)
T 3frx_A          210 LIAS-AGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATA-TG-IKVFSLDPQYLVDDLRPEFAGYSKAA  285 (319)
T ss_dssp             EEEE-EETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEET-TE-EEEEEETTEEEEEEECCCCTTCCGGG
T ss_pred             EEEE-EeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcC-CC-cEEEEeCcCeeeeccCccccccccCc
Confidence            8876 6689999999987654 44444 5578999999999999998875 45 9999998887777765421      3


Q ss_pred             CcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       261 ~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      ...+.+++|+|||++|++|+.||.|+|||+.++
T Consensus       286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            457899999999999999999999999999875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1e-33  Score=258.38  Aligned_cols=245  Identities=14%  Similarity=0.116  Sum_probs=191.3

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC--CeEEEEecCCCCCCCCCe
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTK  115 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~d~~  115 (411)
                      ...+|.+.|++++|+|+|++||+|+ |+.|+|||+.+........+.+|...+.++.|++  ++..|++++.|     ++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D-----~~   82 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD-----RK   82 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT-----SC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC-----CE
Confidence            3568999999999999999999999 9999999998755444445668888899999975  47788898888     99


Q ss_pred             EEEEECCCCc--EEEEEe-ecCceeEEEEcCC--eEEEE---EcCeEEEEEcCCcee---eEEEeccCCCcceEEEccCC
Q 015198          116 VIIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL---LHQIETLANLRGLCCLSHHS  184 (411)
Q Consensus       116 i~vwd~~~~~--~~~~~~-~~~~i~~~~~~~~--~~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~  184 (411)
                      |++||+++++  .+..+. |...|.+++|+|+  +.+++   .|+.|++||++.+..   ...+..|...+..+.++++.
T Consensus        83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred             EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence            9999998874  555565 8899999999997  66666   799999999987532   23344565555555565542


Q ss_pred             ---------------CceEEEEecCCCCeEEEEEcCC----cceEEEeccccceeEEEecCCC----CEEEEEcCCCeEE
Q 015198          185 ---------------STSVLACPGLQRGQVRIEHFGL----NMIKLINAHDSHIACFTLTLDG----LLLATASTRGTLI  241 (411)
Q Consensus       185 ---------------~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~i~~l~~sp~g----~~l~s~s~dg~~I  241 (411)
                                     .+.+|+ +|+.|+.|++|+...    ..+..+.+|...|.+++|+|++    ++|++++.|+. |
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-v  240 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-V  240 (316)
T ss_dssp             CC------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-E
T ss_pred             CCccccccccccCccccceEE-EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-E
Confidence                           124555 577999999998864    3566778999999999999987    89999999999 9


Q ss_pred             EEEECCCC---c-eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          242 RIFNTVDG---T-RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       242 ~vwd~~~~---~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      ++||+.+.   + ....+..  |...|++++|+|++++|++++.|++|+||+...
T Consensus       241 ~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          241 FIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            99998763   1 1223444  677999999999999999999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.7e-33  Score=264.47  Aligned_cols=278  Identities=10%  Similarity=0.037  Sum_probs=218.9

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      ..+++++|+|++++|++++ |+.|++|++.+......  +..+ .......+++++..+++++.|     +.|++||+.+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~  128 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM--LKRA-DYTAVDTAKLQMRRFILGTTE-----GDIKVLDSNF  128 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT--SCSC-CEEEEEEECSSSCEEEEEETT-----SCEEEECTTS
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeE--EecC-CceEEEEEecCCCEEEEEECC-----CCEEEEeCCC
Confidence            3455899999999999999 99999999986544322  2233 333444578888889998887     9999999999


Q ss_pred             CcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeE
Q 015198          124 SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQV  199 (411)
Q Consensus       124 ~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i  199 (411)
                      ++.+..+. |...|.+++|+|++.+++   .|+.|++||+.+++.+..+..|...+..+++  ++++.+|++ ++.||.|
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s-~~~d~~v  205 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI--IDRGRNVLS-ASLDGTI  205 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE--ETTTTEEEE-EETTSCE
T ss_pred             cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE--cCCCCEEEE-EcCCCcE
Confidence            98888765 999999999999998777   6899999999999999999888875555555  455667765 6689999


Q ss_pred             EEEEcCC-cceEEEec---cc---------------------cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE
Q 015198          200 RIEHFGL-NMIKLINA---HD---------------------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (411)
Q Consensus       200 ~i~~~~~-~~~~~~~~---~~---------------------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (411)
                      ++|+... +.+..+..   |.                     ..+.+++|+|++++|++++.||. |++||+++++.+..
T Consensus       206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~  284 (420)
T 3vl1_A          206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTIQ  284 (420)
T ss_dssp             EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTTCCEEEE
T ss_pred             EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCCCceeEE
Confidence            9998764 55555554   22                     44555666899999999999999 99999999998887


Q ss_pred             EeCCCCCcceEEEEeCCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCC
Q 015198          255 VRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGS  333 (411)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (411)
                      +... |...|.+++|+|+++ +|++++.||.|++||++++++..                                    
T Consensus       285 ~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~------------------------------------  327 (420)
T 3vl1_A          285 LPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV------------------------------------  327 (420)
T ss_dssp             ECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS------------------------------------
T ss_pred             cccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch------------------------------------
Confidence            7654 678999999999999 99999999999999999876421                                    


Q ss_pred             cccccccccCcccccccceEEEEe-CCCceEEEEEccCCEEEEEEeCCcEEEEEEecC
Q 015198          334 SLSFMRGVLPKYFSSEWSFAQFHI-PEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPV  390 (411)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~  390 (411)
                                         ..+.. +...+..+.+.+.+.|++++.||.+++|.+...
T Consensus       328 -------------------~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          328 -------------------GEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             -------------------EEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred             -------------------hhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence                               13333 233455555554467788888999999999863

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=252.69  Aligned_cols=243  Identities=16%  Similarity=0.259  Sum_probs=186.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc-----ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-----ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      +|.+.|.+++|+|++++|++|+ |+.|+||+++...     ......+.+|...+.++.|+|++.++++++.|     +.
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D-----~~  130 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD-----KS  130 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT-----SC
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC-----CE
Confidence            4999999999999999999999 9999999985321     12233455788889999999999999999988     99


Q ss_pred             EEEEECCC----CcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc--eeeEEEeccCCCcceEEEccCCC
Q 015198          116 VIIWDDHQ----SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL--KLLHQIETLANLRGLCCLSHHSS  185 (411)
Q Consensus       116 i~vwd~~~----~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~  185 (411)
                      |++||+..    .+++..+. |...|.+++|+|++.+++   .|+.|++||+.++  +++..+..|...+..+.++++..
T Consensus       131 v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  210 (330)
T 2hes_X          131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG  210 (330)
T ss_dssp             EEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred             EEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence            99999843    24566666 899999999999998887   6999999998766  67788888888666666666544


Q ss_pred             ceEEEEecCCCCeEEEEEcCCc---------ceEEEec-cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc--eEE
Q 015198          186 TSVLACPGLQRGQVRIEHFGLN---------MIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQ  253 (411)
Q Consensus       186 ~~~l~~~g~~dg~i~i~~~~~~---------~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~  253 (411)
                      +..|++ |+.|+.|++|+....         ....+.. |...|.+++|++++ +|++++.||. |++||..+++  .+.
T Consensus       211 ~~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~~~~~~~  287 (330)
T 2hes_X          211 VFRLCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDGEWKVFA  287 (330)
T ss_dssp             SCEEEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETTEEEEEE
T ss_pred             eeEEEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCCceEEEe
Confidence            666665 668999999987542         2333344 89999999999766 7999999999 9999998774  233


Q ss_pred             EEeCCCCCc-ceEEEEeCC--CCCEEEEEeCCCcEEEEEcccc
Q 015198          254 EVRRGVDRA-EIYSIALSP--NVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       254 ~~~~~~~~~-~v~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      .... .|.. .|.+++|+|  ++++|++++.||+|+||++++.
T Consensus       288 ~~~~-~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~  329 (330)
T 2hes_X          288 KRAL-CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA  329 (330)
T ss_dssp             EESC-TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred             cccc-ccccceEEEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence            3322 2665 899999999  7899999999999999998753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-34  Score=270.53  Aligned_cols=248  Identities=13%  Similarity=0.178  Sum_probs=205.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCC--cceEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i  116 (411)
                      ..|...|.+++|+|++++|++|+ |+.|++|++...  .......+..|...+.++.|+++ +.++++++.|     +.|
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~v  138 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN-----GEI  138 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS-----SCE
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC-----CeE
Confidence            46889999999999999999999 999999999862  12233345578888999999998 7888888887     999


Q ss_pred             EEEECCCCc------EEEEE----eecCceeEEEEcCC-eEEEE---EcCeEEEEEcCCceeeEEEeccCC----CcceE
Q 015198          117 IIWDDHQSR------CIGEF----AFRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLAN----LRGLC  178 (411)
Q Consensus       117 ~vwd~~~~~------~~~~~----~~~~~i~~~~~~~~-~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~  178 (411)
                      ++||+.+++      ....+    .|...|.+++|+|+ +.+++   .|+.|++||+++++.+..+..+..    ...+.
T Consensus       139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~  218 (416)
T 2pm9_A          139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS  218 (416)
T ss_dssp             EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE
T ss_pred             EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE
Confidence            999998886      33333    37889999999998 55555   799999999999999888876521    22455


Q ss_pred             EEccCCCc-eEEEEecCCCC---eEEEEEcCC--cceEEEe-ccccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCc
Q 015198          179 CLSHHSST-SVLACPGLQRG---QVRIEHFGL--NMIKLIN-AHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGT  250 (411)
Q Consensus       179 ~~~~~~~~-~~l~~~g~~dg---~i~i~~~~~--~~~~~~~-~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~  250 (411)
                      ++.+++++ .++++ ++.++   .|++|+...  ..+..+. +|...|.+++|+| ++++|++++.|+. |++||+++++
T Consensus       219 ~~~~~~~~~~~l~~-~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~~  296 (416)
T 2pm9_A          219 VVEWHPKNSTRVAT-ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESAE  296 (416)
T ss_dssp             EEEECSSCTTEEEE-EECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSCC
T ss_pred             EEEECCCCCCEEEE-EECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCCc
Confidence            55566655 34544 56787   999999875  4567777 8999999999999 9999999999999 9999999999


Q ss_pred             eEEEEeCCCCCcceEEEEeCCCC-CEEEEEeCCCcEEEEEccccccCC
Q 015198          251 RLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       251 ~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      .+..+..  |...|.+++|+|++ .+|++++.||.|+||++.+++...
T Consensus       297 ~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~  342 (416)
T 2pm9_A          297 QLSQFPA--RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL  342 (416)
T ss_dssp             EEEEEEC--SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred             cceeecC--CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence            9999988  78899999999999 899999999999999999887543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.4e-32  Score=251.60  Aligned_cols=240  Identities=14%  Similarity=0.193  Sum_probs=200.3

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc----eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE----TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      ....|...|.+++|+|+|.+|++|+ |+.+++|++.....    .....+..|...+..+.|++++..+++++.|     
T Consensus       101 ~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D-----  175 (354)
T 2pbi_B          101 AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD-----  175 (354)
T ss_dssp             EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT-----
T ss_pred             EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC-----
Confidence            3456788999999999999999999 99999999864211    1112233577788899999999888888888     


Q ss_pred             CeEEEEECCCCcEEEEEe-ecCceeEEEEcC--CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSR--DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~--~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      ++|++||+++++.+..+. |...|.++.++|  ++.+++   .|+.|++||+++++++..+..|...+..  +.++|++.
T Consensus       176 ~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~--v~~~p~~~  253 (354)
T 2pbi_B          176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNS--VRYYPSGD  253 (354)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EEECTTSS
T ss_pred             CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEE--EEEeCCCC
Confidence            999999999999999988 899999999987  455555   6999999999999999999888875554  44555666


Q ss_pred             EEEEecCCCCeEEEEEcCCc-ceEEEecc--ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcce
Q 015198          188 VLACPGLQRGQVRIEHFGLN-MIKLINAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~~-~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (411)
                      +|++ |+.|+.|++|+.... .+..+..+  ...+.+++|+|+|++|++|+.|+. |++||+.+++.+..+.+  |...|
T Consensus       254 ~l~s-~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~l~~--h~~~v  329 (354)
T 2pbi_B          254 AFAS-GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVLKGSRVSILFG--HENRV  329 (354)
T ss_dssp             EEEE-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCSEEEEECC--CSSCE
T ss_pred             EEEE-EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECCCCceEEEEEC--CCCcE
Confidence            7765 668999999998754 33344332  347889999999999999999999 99999999999988887  88899


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          265 YSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      .+++|+|||++|++|+.|++|+||+
T Consensus       330 ~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          330 STLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999999999996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-32  Score=260.47  Aligned_cols=250  Identities=14%  Similarity=0.183  Sum_probs=199.0

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEe-CCcEEEEecCC---Ccce-EEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           41 DVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEP---FKET-FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        41 ~~h~~~V~~l~~s~-~g~~la~g~-dg~i~iw~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      .+|.+.|++++|+| ++++|++|+ |+.|+|||+.+   .... ....+ .|...+.++.|++++..+++++.|     +
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d-----g  133 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD-----G  133 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC-----C
Confidence            88999999999999 999999999 99999999875   2211 11222 467789999999999999999988     9


Q ss_pred             eEEEEECC---CCcEEEEEe-------------ecCceeEEE--EcCCeEEEE---EcCeEEEEEcCCceeeEEEec--c
Q 015198          115 KVIIWDDH---QSRCIGEFA-------------FRSDVRSVK--LSRDRIVVV---LEHKIYVYSFVDLKLLHQIET--L  171 (411)
Q Consensus       115 ~i~vwd~~---~~~~~~~~~-------------~~~~i~~~~--~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~--~  171 (411)
                      .|++||+.   +++.+..+.             +...+.++.  +++++.+++   .|+.|++||+++++.+..+..  |
T Consensus       134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h  213 (437)
T 3gre_A          134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR  213 (437)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred             EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence            99999984   666555443             233455555  456777777   689999999999999999987  5


Q ss_pred             CCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEe-ccccceeEEEec----CCCCEEEEEcCCCeEEEEEE
Q 015198          172 ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLIN-AHDSHIACFTLT----LDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       172 ~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~-~~~~~i~~l~~s----p~g~~l~s~s~dg~~I~vwd  245 (411)
                      ..  .+.++.+++++.+|++ |+.||.|++|+... +.+..+. .|...|.+++|+    +++.+|++++.|+. |++||
T Consensus       214 ~~--~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd  289 (437)
T 3gre_A          214 HG--AVSSICIDEECCVLIL-GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWN  289 (437)
T ss_dssp             GC--CEEEEEECTTSCEEEE-EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEE
T ss_pred             CC--ceEEEEECCCCCEEEE-EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEE
Confidence            55  4555666666777775 66899999999765 4556665 788899999555    56889999999999 99999


Q ss_pred             CCCCceEEEEeCCC------------------------CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 015198          246 TVDGTRLQEVRRGV------------------------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSS  301 (411)
Q Consensus       246 ~~~~~~~~~~~~~~------------------------~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~  301 (411)
                      +++++.+..+..+.                        |...|++++|+ ++++|++++.|+.|++||+.+++....+..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence            99999988887532                        55678999999 779999999999999999999987654443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.8e-32  Score=275.94  Aligned_cols=284  Identities=13%  Similarity=0.154  Sum_probs=236.6

Q ss_pred             ccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      .....+|.+.|.+++|+|++++|++|+ +|.|+|||+.+.......  ..+...+.++.|++++..+++++.|     +.
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d-----g~   78 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI--QVTETPVRAGKFIARKNWIIVGSDD-----FR   78 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEEEGGGTEEEEEETT-----SE
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE--ecCCCcEEEEEEeCCCCEEEEEeCC-----Ce
Confidence            345788999999999999999999999 999999999886554443  3778889999999999999998888     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCC-CceEE
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHS-STSVL  189 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l  189 (411)
                      |++||+.+++.+..+. |...|.+++|+|++..++   .|+.|++||+.++ .....+..|...+.  ++.++| ++..+
T Consensus        79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~--~~~~~p~~~~~l  156 (814)
T 3mkq_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM--CVAFNPKDPSTF  156 (814)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE--EEEEETTEEEEE
T ss_pred             EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE--EEEEEcCCCCEE
Confidence            9999999999999988 899999999999998777   6899999999876 67777777777544  445555 45566


Q ss_pred             EEecCCCCeEEEEEcCC-cceEEEeccc-cceeEEEecC--CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          190 ACPGLQRGQVRIEHFGL-NMIKLINAHD-SHIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~-~~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                      ++ ++.||.|++|+... .....+..+. ..+.+++|+|  ++.+|++++.||. |++||+.+++.+..+..  |...|.
T Consensus       157 ~~-~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~--~~~~v~  232 (814)
T 3mkq_A          157 AS-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVS  232 (814)
T ss_dssp             EE-EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEEEC--CSSCEE
T ss_pred             EE-EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEcC--CCCCEE
Confidence            55 66899999998754 4455555554 8999999999  9999999999999 99999999999999987  788999


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcc
Q 015198          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKY  345 (411)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (411)
                      +++|+|++++|++++.||.|++||+.+++...                                                
T Consensus       233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~------------------------------------------------  264 (814)
T 3mkq_A          233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK------------------------------------------------  264 (814)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTCSEEE------------------------------------------------
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE------------------------------------------------
Confidence            99999999999999999999999998876432                                                


Q ss_pred             cccccceEEEEeCCCceEEEEEccCCE--EEEEEeCCcEEEEEEec
Q 015198          346 FSSEWSFAQFHIPEVTHFIAAFGSQNT--VVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dg~~~~~~~~~  389 (411)
                              .+..+......++|++++.  +++++.++.+.+|.+..
T Consensus       265 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          265 --------TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             --------EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             --------EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence                    3333445667788888843  67788888888887654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.9e-32  Score=251.82  Aligned_cols=248  Identities=16%  Similarity=0.187  Sum_probs=199.5

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc--eEEeecCCCCEEEEEEeccC--CeEEEEecCCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYP  112 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~  112 (411)
                      ....+|.+.|++++|+|++++|++|+ ||.|+||++.+...  .....+..|...+.++.|++  ++..+++++.|    
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d----   80 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD----   80 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT----
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC----
Confidence            34679999999999999999999999 99999999986432  23334557888899999998  58888888887    


Q ss_pred             CCeEEEEECCCC---------cEEEEEe-ecCceeEEEEcCC--eEEEE---EcCeEEEEEcCCceeeEEEe--------
Q 015198          113 PTKVIIWDDHQS---------RCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKLLHQIE--------  169 (411)
Q Consensus       113 d~~i~vwd~~~~---------~~~~~~~-~~~~i~~~~~~~~--~~~~~---~dg~i~iwd~~~~~~~~~~~--------  169 (411)
                       +.|++||+.++         +.+..+. |...|.+++|+|+  +.+++   .|+.|++||+++++.+..+.        
T Consensus        81 -g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           81 -KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             -SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred             -CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence             99999999887         4566665 8999999999998  77666   68999999998776544332        


Q ss_pred             -----ccCCCcceEEEccCCC---ceEEEEecCCCCeEEEEEcCCcc---eEEEeccccceeEEEecCCC----CEEEEE
Q 015198          170 -----TLANLRGLCCLSHHSS---TSVLACPGLQRGQVRIEHFGLNM---IKLINAHDSHIACFTLTLDG----LLLATA  234 (411)
Q Consensus       170 -----~~~~~~~~~~~~~~~~---~~~l~~~g~~dg~i~i~~~~~~~---~~~~~~~~~~i~~l~~sp~g----~~l~s~  234 (411)
                           .+..  .+.++.++++   +..+++ ++.++.+.+|......   +..+.+|...|.+++|+|++    ++|+++
T Consensus       160 ~~~~~~~~~--~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          160 SIPPANHLQ--SDFCLSWCPSRFSPEKLAV-SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             SCCCSSCSC--CCEEEEECCCSSSCCEEEE-EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred             ccccCCccc--ceeEEEeccCCCCCcEEEE-ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEE
Confidence                 2333  3444555443   556665 5578888776655443   55667899999999999998    899999


Q ss_pred             cCCCeEEEEEECCCC----------------------------------------------ceEEEEeCCCCCcceEEEE
Q 015198          235 STRGTLIRIFNTVDG----------------------------------------------TRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       235 s~dg~~I~vwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~l~  268 (411)
                      +.||. |++||++++                                              +.+..+..  |...|++++
T Consensus       237 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~  313 (351)
T 3f3f_A          237 CKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVS  313 (351)
T ss_dssp             ETTSC-EEEEEEEECC---------------------------------------CCSEEEEEEEEECT--TSSCEEEEE
T ss_pred             cCCCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec--ccccEEEEE
Confidence            99999 999999875                                              45556666  788999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      |+|++++|++++.||.|+||++.+++..
T Consensus       314 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          314 WNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             ECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             EcCCCCEEEEecCCCcEEEEecCcCcch
Confidence            9999999999999999999999988654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.8e-32  Score=250.55  Aligned_cols=197  Identities=16%  Similarity=0.150  Sum_probs=158.8

Q ss_pred             EEEEeccCCeEEE--EecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceee
Q 015198           90 IVEMLFRCNILAL--VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLL  165 (411)
Q Consensus        90 ~~~~~~~~~~~~l--~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~  165 (411)
                      +..++|+|++.++  ++++.|     ++|+|||+.+++++..+.|...|.+++|+|++.+++  .++.+++|+..+++.+
T Consensus       136 ~~~v~fSpDg~~la~as~~~d-----~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~  210 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVP-----AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCI  210 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSS-----CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEE
T ss_pred             EEEEEEcCCCCEEEEEECCCC-----CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcce
Confidence            3456788887654  566666     999999999999999999999999999999999988  6788889988888776


Q ss_pred             EEEeccCCCcceEEEccCCCceEEEEecCCCC----eEEEEEcCCc-----ceEEEeccccceeEEEecCCCCEEEEEcC
Q 015198          166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRG----QVRIEHFGLN-----MIKLINAHDSHIACFTLTLDGLLLATAST  236 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg----~i~i~~~~~~-----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~  236 (411)
                      ...........+.++.+++++..+++++ .++    .+++|+....     ....+.+|...|++++|+|+|++||+|+.
T Consensus       211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s-~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIADDTVLIAAS-LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEETTEEEEEEE-ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred             eeeecCCCCCCEEEEEEcCCCCEEEEEe-cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence            5543333333455666666777777643 444    4555765432     23456789999999999999999999999


Q ss_pred             CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      |+. |+|||+++++++.++..+ |...|++++|+|||++||+++.|++|+|||+..+-
T Consensus       290 D~~-V~iwd~~~~~~~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          290 DNS-IALVKLKDLSMSKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             TSC-EEEEETTTTEEEEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             CCE-EEEEECCCCcEEEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            999 999999999999887433 88999999999999999999999999999997553

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.8e-32  Score=256.81  Aligned_cols=287  Identities=9%  Similarity=0.048  Sum_probs=224.5

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      ..+....|++++++|++|+ |+.|++||+.+...  ...+..|...+.++.|++++..+++++.|     +.|++||+.+
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~  170 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ--REIDQAHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVKD  170 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE--EEETTSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce--eeecccccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCCC
Confidence            4455567899999999999 99999999986443  33345788899999999999999999988     9999999999


Q ss_pred             CcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccC---CCcceE------------------
Q 015198          124 SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA---NLRGLC------------------  178 (411)
Q Consensus       124 ~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~------------------  178 (411)
                      ++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..+.   ..+..+                  
T Consensus       171 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            99998888 899999999999998777   68999999999999998887532   222222                  


Q ss_pred             -EEccCCCceEEEEecCCCCeEEEEEcCCc-ceEEE-eccccceeEEEecCCCC-EEEEEcCCCeEEEEEECCCCce-EE
Q 015198          179 -CLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLI-NAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTVDGTR-LQ  253 (411)
Q Consensus       179 -~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~-~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~~-~~  253 (411)
                       ++.+++++.+|++ |+.||.|++|+.... .+..+ ..|...|.+++|+|++. +|++++.||. |++||+++++. +.
T Consensus       251 ~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~  328 (420)
T 3vl1_A          251 NNLEFGTYGKYVIA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPECPVG  328 (420)
T ss_dssp             CTTCSSCTTEEEEE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSE
T ss_pred             cceEEcCCCCEEEE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcCchh
Confidence             3445677888876 668999999987653 34444 45789999999999999 9999999999 99999998754 66


Q ss_pred             EEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCC
Q 015198          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGS  333 (411)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (411)
                      .+..+ +...|.++.+ +++++|++++.|+.|++|++..+.........                               
T Consensus       329 ~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~-------------------------------  375 (420)
T 3vl1_A          329 EFLIN-EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEF-------------------------------  375 (420)
T ss_dssp             EEEES-TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECT-------------------------------
T ss_pred             hhhcc-CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceec-------------------------------
Confidence            67654 5668888865 57889999999999999999886543211100                               


Q ss_pred             cccccccccCcccccccceEEEEeCCCceEEEEEccCC----EEEEEEeCCcEEEEEEec
Q 015198          334 SLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQN----TVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~dg~~~~~~~~~  389 (411)
                           .           ....+....+.+..++|++++    .|++++.+|.+.+|+++.
T Consensus       376 -----~-----------~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          376 -----E-----------TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             -----T-----------SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             -----c-----------CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence                 0           000122223456678899883    599999999999998753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-32  Score=253.73  Aligned_cols=250  Identities=13%  Similarity=0.126  Sum_probs=201.3

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC--eEEEEecCCCCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQYPPT  114 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~~~d~  114 (411)
                      ....+|.+.|++++|+|++++|++|+ ||.|+||++..........+..|...+.++.|+++  +.++++++.|     +
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g   79 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----G   79 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----S
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-----C
Confidence            34678999999999999999999999 99999999985444444456678888999999866  7888888887     9


Q ss_pred             eEEEEECCCCc--EEEEEe-ecCceeEEEEcCC--eEEEE---EcCeEEEEEcCCcee--eEEEeccCCCcceEEEccCC
Q 015198          115 KVIIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHS  184 (411)
Q Consensus       115 ~i~vwd~~~~~--~~~~~~-~~~~i~~~~~~~~--~~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~  184 (411)
                      .|++||+.+++  .+..+. |...|.+++|+|+  +.+++   .|+.|++||+++++.  ...+..|...+..+++.+..
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            99999999987  555555 8899999999998  76666   699999999987743  33455666644444444421


Q ss_pred             -----------CceEEEEecCCCCeEEEEEcCCc-----ceEEEeccccceeEEEecCC---CCEEEEEcCCCeEEEEEE
Q 015198          185 -----------STSVLACPGLQRGQVRIEHFGLN-----MIKLINAHDSHIACFTLTLD---GLLLATASTRGTLIRIFN  245 (411)
Q Consensus       185 -----------~~~~l~~~g~~dg~i~i~~~~~~-----~~~~~~~~~~~i~~l~~sp~---g~~l~s~s~dg~~I~vwd  245 (411)
                                 ++.++++ |+.||.|++|+....     ....+.+|...|.+++|+|+   +++|++++.||. |++||
T Consensus       160 ~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd  237 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWT  237 (379)
T ss_dssp             ----------CTTCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEE
T ss_pred             ccccccccCCCCCCEEEE-EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEEe
Confidence                       4667765 668999999987542     34567789999999999999   899999999999 99999


Q ss_pred             CCCCc---eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          246 TVDGT---RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       246 ~~~~~---~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      ++++.   ....+....+...|.+++|+|++++|++++.||.|++|+++.+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            98875   22333333367799999999999999999999999999998654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=266.63  Aligned_cols=242  Identities=9%  Similarity=-0.008  Sum_probs=188.8

Q ss_pred             CCCCeEEEEEcCCC---------CEEEE-------------------Ee-CCcEEEEecCCCcceE--EeecCCCCEEEE
Q 015198           43 DEIELISVSWNQDY---------GCFAA-------------------GT-SCGFRIYNCEPFKETF--RRDLKSGGFRIV   91 (411)
Q Consensus        43 h~~~V~~l~~s~~g---------~~la~-------------------g~-dg~i~iw~~~~~~~~~--~~~~~~~~~~~~   91 (411)
                      +.+.|++|+|+|++         ++||+                   ++ |++|+||++++.+...  ...+..+...+.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            56788899998876         56666                   44 6789999998754322  122324456688


Q ss_pred             EEeccCC------eEEEEecCCCCCCCCCeEEEEECCCCcE-----------EEEEe-ecCceeEEEEcCCeEEEE--Ec
Q 015198           92 EMLFRCN------ILALVGAGDNSQYPPTKVIIWDDHQSRC-----------IGEFA-FRSDVRSVKLSRDRIVVV--LE  151 (411)
Q Consensus        92 ~~~~~~~------~~~l~s~~~d~~~~d~~i~vwd~~~~~~-----------~~~~~-~~~~i~~~~~~~~~~~~~--~d  151 (411)
                      .+.|+|+      +.+|++++.|     ++|++||+.+++.           ...+. |...|.+++|++++.++.  .|
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~D-----gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~D  286 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQE-----GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKN  286 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETT-----SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETT
T ss_pred             EEEECCCCCCCCCCceEEEEecC-----CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCC
Confidence            8888886      5688988888     9999999877642           22444 788999999998876555  79


Q ss_pred             CeEEEEEcCCce-eeEEEeccCCCcceEEEccCCCc-eEEEEecCCCCeEEEEEcCC-cceEEEecccc--ceeEEEecC
Q 015198          152 HKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSST-SVLACPGLQRGQVRIEHFGL-NMIKLINAHDS--HIACFTLTL  226 (411)
Q Consensus       152 g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~--~i~~l~~sp  226 (411)
                      |+|++||+++++ ....+..|...+..+++.+.+++ .+|++ |+.|++|+||+... +....+.+|..  .|.+++|+|
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS-~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp  365 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST-VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP  365 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE-EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred             CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE-eccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence            999999998764 45567888886666654666665 56664 67999999999764 55556666653  588999999


Q ss_pred             CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          227 DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      +++.|++++.|+. |++||++++.++..+.+  |.+.|++++|+|+|++|++|+.||+|++||+..+
T Consensus       366 ~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          366 QIYSYIYSDGASS-LRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             TTTEEEEECSSSE-EEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             CcCeEEEeCCCCc-EEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            9999999999999 99999999998888887  8889999999999999999999999999998654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.6e-31  Score=242.72  Aligned_cols=237  Identities=12%  Similarity=0.226  Sum_probs=207.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      +|...|.+++|+|++++|++++ |+.|++|++++.+......+..+...+..+.|++++..+++++.+     +.|++||
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~~~d  169 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWD  169 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC-----CcEEEEe
Confidence            7899999999999999999999 999999999886644444455777788999999999888888887     9999999


Q ss_pred             CCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       121 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      +.+++.+..+. |...|.+++|+|++..++   .|+.|++||+++++.+..+.. ..  .+.++.+++++.++++ ++.+
T Consensus       170 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~--~v~~~~~s~~~~~l~~-~~~~  245 (337)
T 1gxr_A          170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-TS--QIFSLGYCPTGEWLAV-GMES  245 (337)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SS--CEEEEEECTTSSEEEE-EETT
T ss_pred             CCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-CC--ceEEEEECCCCCEEEE-EcCC
Confidence            99999998887 899999999999997777   689999999999988877753 33  4556666777778876 5589


Q ss_pred             CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEE
Q 015198          197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL  276 (411)
Q Consensus       197 g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l  276 (411)
                      +.|++|+........+..|...|.+++|+|++++|++++.||. |++||+.+++.+....   |...|.+++|+|++++|
T Consensus       246 ~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l  321 (337)
T 1gxr_A          246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             SCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEE
T ss_pred             CcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECCCCeEEEEec---CCCcEEEEEECCCCCEE
Confidence            9999999988888888999999999999999999999999999 9999999999886654   67789999999999999


Q ss_pred             EEEeCCCcEEEEEcc
Q 015198          277 AVASDKGTVHIFSLR  291 (411)
Q Consensus       277 ~s~s~dg~I~vwd~~  291 (411)
                      ++++.||.|++|++.
T Consensus       322 ~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          322 VTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEETTSCEEEEEEE
T ss_pred             EEecCCCeEEEEEEe
Confidence            999999999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.2e-32  Score=248.37  Aligned_cols=242  Identities=13%  Similarity=0.127  Sum_probs=193.1

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+|...|.+++|+|++.+|++|+ |+.|+|||+.+.+....  +..|...+.++.|+|++..+++++.|     +.|+
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~~~d-----~~i~  143 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR--FVGHQSEVYSVAFSPDNRQILSAGAE-----REIK  143 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEE--EECCCSCEEEEEECSSTTEEEEEETT-----SCEE
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEE--EcCCCCcEEEEEECCCCCEEEEEcCC-----CEEE
Confidence            4678999999999999999999999 99999999998655433  44788889999999999999999888     9999


Q ss_pred             EEECCCCcEEEEE----eecCceeEEEEcCCe----------EEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEE
Q 015198          118 IWDDHQSRCIGEF----AFRSDVRSVKLSRDR----------IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCL  180 (411)
Q Consensus       118 vwd~~~~~~~~~~----~~~~~i~~~~~~~~~----------~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  180 (411)
                      +||+.. +.....    .|...|.+++|+|++          .+++   .|+.|++|| ...+....+..|...  +.++
T Consensus       144 ~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~--v~~~  219 (343)
T 2xzm_R          144 LWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESN--VNHL  219 (343)
T ss_dssp             EEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSC--EEEE
T ss_pred             EEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCcccc--ceEE
Confidence            999874 333333    267889999999986          4444   699999999 456777788888774  4556


Q ss_pred             ccCCCceEEEEecCCCCeEEEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEE--EEeC
Q 015198          181 SHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ--EVRR  257 (411)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~--~~~~  257 (411)
                      ++++++.+|++ |+.||.|++|+. ..........+...|.+++|+|++.+|+++ .|+. |++||+.+++...  .+..
T Consensus       220 ~~s~~g~~l~s-gs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~-v~iw~~~~~~~~~~~~~~~  296 (343)
T 2xzm_R          220 SISPNGKYIAT-GGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQG-VKIFNLMTQSKAPVCTIEA  296 (343)
T ss_dssp             EECTTSSEEEE-EETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSC-EEEEESSSCCSCSEEECCC
T ss_pred             EECCCCCEEEE-EcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCC-EEEEEeCCCCCCceEEeec
Confidence            66667778876 668999999997 333333333456779999999999987755 5778 9999998876543  3331


Q ss_pred             C---------CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          258 G---------VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       258 ~---------~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .         .|...|.+++|+|+|++|++|+.||.|++|++++++
T Consensus       297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            0         266789999999999999999999999999998875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-31  Score=253.00  Aligned_cols=249  Identities=12%  Similarity=0.149  Sum_probs=201.4

Q ss_pred             cccCCCCCCeEEEEEcC-CCCEEEEEe-CCcEEEEecCCCcceEEeec-----------CCCCEEEEEEeccC-CeEEEE
Q 015198           38 AFSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDL-----------KSGGFRIVEMLFRC-NILALV  103 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~-~g~~la~g~-dg~i~iw~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~l~  103 (411)
                      ....+|.+.|++++|+| ++++|++|+ ||.|++|++++.........           ..+...+.++.|++ ++..++
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            34667999999999999 999999999 99999999987544332211           24778899999999 667788


Q ss_pred             ecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe---EEEE---EcCeEEEEEcCCceeeEEEeccCCCcce
Q 015198          104 GAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR---IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGL  177 (411)
Q Consensus       104 s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~  177 (411)
                      +++.|     +.|++||+.+++.+..+.+...+.++.+.+.+   .+++   .|+.|++||+++++.+..+..|...+. 
T Consensus       117 s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~-  190 (408)
T 4a11_B          117 SSSFD-----KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL-  190 (408)
T ss_dssp             EEETT-----SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE-
T ss_pred             EEeCC-----CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE-
Confidence            88877     99999999999999999999999999999854   3555   789999999999999999988877544 


Q ss_pred             EEEccCCCceEEEEecCCCCeEEEEEcCCc--ceEEE---------------eccccceeEEEecCCCCEEEEEcCCCeE
Q 015198          178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIKLI---------------NAHDSHIACFTLTLDGLLLATASTRGTL  240 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~~~~---------------~~~~~~i~~l~~sp~g~~l~s~s~dg~~  240 (411)
                       ++.+++++..++++|+.||.|++|+....  .+..+               ..|...|.+++|+|++++|++++.|+. 
T Consensus       191 -~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-  268 (408)
T 4a11_B          191 -AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-  268 (408)
T ss_dssp             -EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred             -EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-
Confidence             45555555543345778999999987643  23333               578899999999999999999999999 


Q ss_pred             EEEEECCCC-----------------------------------------------ceEEEEeCCCCCcceEEEEeCCCC
Q 015198          241 IRIFNTVDG-----------------------------------------------TRLQEVRRGVDRAEIYSIALSPNV  273 (411)
Q Consensus       241 I~vwd~~~~-----------------------------------------------~~~~~~~~~~~~~~v~~l~~spdg  273 (411)
                      |++||+.++                                               +.+..+..  |...|.+++|+|++
T Consensus       269 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~  346 (408)
T 4a11_B          269 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--HYKTVDCCVFQSNF  346 (408)
T ss_dssp             EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--CSSCEEEEEEETTT
T ss_pred             EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc--CCCeEEEEEEcCCC
Confidence            999998764                                               33445555  77899999999999


Q ss_pred             CEEEEEeCCCcEEEEEccccccC
Q 015198          274 QWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       274 ~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      ++|++++.||.|++||+++++..
T Consensus       347 ~~l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          347 QELYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             TEEEEEETTSCEEEEEECC----
T ss_pred             CEEEEECCCCeEEEEeCCCCCcc
Confidence            99999999999999999998754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-30  Score=246.37  Aligned_cols=281  Identities=14%  Similarity=0.099  Sum_probs=222.2

Q ss_pred             cCCCCCC--eEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           40 SDVDEIE--LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        40 ~~~h~~~--V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..+|...  +.+++|++  ..+++++ |+.|++|++++......... .+...+.++.|++++..+++++.|     +.|
T Consensus        87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~d-----g~i  158 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAET-DESTYVASVKWSHDGSFLSVGLGN-----GLV  158 (401)
T ss_dssp             CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEEC-CTTCCEEEEEECTTSSEEEEEETT-----SCE
T ss_pred             CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeec-CCCCCEEEEEECCCCCEEEEECCC-----CeE
Confidence            3466655  44566665  4455556 99999999998665554443 467889999999999999998887     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcC-CceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      ++||+.+++.+..+. |...|.+++|+++....+ .|+.|++||++ ..+.+..+..|...  +.++.+++++.+|++ |
T Consensus       159 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s-~  235 (401)
T 4aez_A          159 DIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE--VCGLAWRSDGLQLAS-G  235 (401)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC--EEEEEECTTSSEEEE-E
T ss_pred             EEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCC--eeEEEEcCCCCEEEE-E
Confidence            999999999999987 899999999977644444 79999999998 46677788888774  455555666777776 6


Q ss_pred             CCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCC-EEEEEc--CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198          194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL-LLATAS--TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (411)
Q Consensus       194 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s--~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (411)
                      +.||.|++|+... ..+..+..|...|.+++|+|++. ++++++  .|+. |++||+.+++.+..+.   +...|.+++|
T Consensus       236 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~~~~~~~~~---~~~~v~~~~~  311 (401)
T 4aez_A          236 GNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVD---AGSQVTSLIW  311 (401)
T ss_dssp             ETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEE
T ss_pred             eCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCCCCEEEEEe---CCCcEEEEEE
Confidence            6899999998764 56677888999999999999774 666655  7999 9999999999998887   5568999999


Q ss_pred             CCCCCEEEEEe--CCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccc
Q 015198          270 SPNVQWLAVAS--DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (411)
Q Consensus       270 spdg~~l~s~s--~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (411)
                      +|++++|++++  .||.|+|||+.+++...                                                  
T Consensus       312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~--------------------------------------------------  341 (401)
T 4aez_A          312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTK--------------------------------------------------  341 (401)
T ss_dssp             CSSSSEEEEEECTTTCEEEEEEEETTEEEE--------------------------------------------------
T ss_pred             CCCCCeEEEEeecCCCcEEEEecCCcccee--------------------------------------------------
Confidence            99999999854  89999999998865321                                                  


Q ss_pred             cccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                          ...+.-+...+..++|+++ ..|++++.||.|++|++..
T Consensus       342 ----~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          342 ----QVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             ----EEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             ----EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence                0122333456667899998 6788888899999999986

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.2e-31  Score=251.85  Aligned_cols=275  Identities=14%  Similarity=0.215  Sum_probs=221.1

Q ss_pred             cccCCCCCCe-EEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           38 AFSDVDEIEL-ISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        38 ~~~~~h~~~V-~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      ....+|...| .++.+  ++++|++|+ ||.|++||+.+.+....  +..|...+.++.|++++ .+++++.|     +.
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~--~~~h~~~V~~l~~~~~~-~l~s~s~d-----g~  184 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ--LSGHDGGVWALKYAHGG-ILVSGSTD-----RT  184 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECSTT-EEEEEETT-----SC
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEE--EeCCCcCEEEEEEcCCC-EEEEEeCC-----CC
Confidence            3567888875 66666  567999999 99999999987654433  44788899999999888 77777777     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEc--CCeEEEE---EcCeEEEEEcCCcee-----------------------eE
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLS--RDRIVVV---LEHKIYVYSFVDLKL-----------------------LH  166 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~--~~~~~~~---~dg~i~iwd~~~~~~-----------------------~~  166 (411)
                      |++||+.+++.+..+. |...|.+++|+  +++.+++   .|+.|++||+++++.                       +.
T Consensus       185 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (464)
T 3v7d_B          185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  264 (464)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred             EEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence            9999999999999988 89999999998  5666666   699999999987653                       33


Q ss_pred             EEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          167 QIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                      .+..|..  .+.++.++  +.++++ |+.||.|++|+.. .+.+..+.+|...|.+++|+|++++|++++.|+. |++||
T Consensus       265 ~~~~~~~--~v~~~~~~--~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd  338 (464)
T 3v7d_B          265 VLRGHMA--SVRTVSGH--GNIVVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWD  338 (464)
T ss_dssp             EECCCSS--CEEEEEEE--TTEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEE
T ss_pred             EccCccc--eEEEEcCC--CCEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEE
Confidence            3444444  44555544  346655 6689999999875 4667788899999999999999999999999999 99999


Q ss_pred             CCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCC
Q 015198          246 TVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISP  325 (411)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (411)
                      +++++.+..+..  |...|.+++|+  +.+|++++.||.|++||+.++....                            
T Consensus       339 ~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~----------------------------  386 (464)
T 3v7d_B          339 LENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF----------------------------  386 (464)
T ss_dssp             TTTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE----------------------------
T ss_pred             CCCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee----------------------------
Confidence            999999999988  88899999997  5899999999999999998865321                            


Q ss_pred             CCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          326 STGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                                                  .++ .......++|++++.+++++.||.+++|++..
T Consensus       387 ----------------------------~~~-~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~  421 (464)
T 3v7d_B          387 ----------------------------SYH-HTNLSAITTFYVSDNILVSGSENQFNIYNLRS  421 (464)
T ss_dssp             ----------------------------EEE-CTTCCCEEEEEECSSEEEEEETTEEEEEETTT
T ss_pred             ----------------------------eec-CCCCccEEEEEeCCCEEEEecCCeEEEEECCC
Confidence                                        111 12344567788887777777799999998875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.3e-31  Score=246.95  Aligned_cols=288  Identities=10%  Similarity=0.101  Sum_probs=225.9

Q ss_pred             CCCccccCCCCCCeEEEEEcCC---CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCC
Q 015198           34 HPQTAFSDVDEIELISVSWNQD---YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS  109 (411)
Q Consensus        34 ~~~~~~~~~h~~~V~~l~~s~~---g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  109 (411)
                      ........+|.+.|++++|+|+   |++|++|+ ||.|+||++++........+..|...+.++.|++++..+++++.| 
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-  107 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD-  107 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC-
Confidence            3344567899999999999999   69999999 999999999874444434455788889999999999999999888 


Q ss_pred             CCCCCeEEEEECCCCcEEEEEeecCceeEEEE--cCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC
Q 015198          110 QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKL--SRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS  184 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (411)
                          +.|++||+.+++.+....|...|.+++|  ++++.+++   .|+.|++||+++++.+..+..+.   ...++.+.+
T Consensus       108 ----g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~  180 (368)
T 3mmy_A          108 ----KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCYCADVIY  180 (368)
T ss_dssp             ----SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEEEEEEET
T ss_pred             ----CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---CceEEEecC
Confidence                9999999999998887789999999999  89988776   68999999999999998888765   345555554


Q ss_pred             CceEEEEecCCCCeEEEEEcCCcceEEE---eccccceeEEEecCCCCE----EEEEcCCCeEEEEEECCCC---ceEEE
Q 015198          185 STSVLACPGLQRGQVRIEHFGLNMIKLI---NAHDSHIACFTLTLDGLL----LATASTRGTLIRIFNTVDG---TRLQE  254 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i~~~~~~~~~~~---~~~~~~i~~l~~sp~g~~----l~s~s~dg~~I~vwd~~~~---~~~~~  254 (411)
                      +  .+++ +..++.+.+|+.........   ..+...+.++++.++...    +++++.|+. |++||++..   +.+..
T Consensus       181 ~--~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~  256 (368)
T 3mmy_A          181 P--MAVV-ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFT  256 (368)
T ss_dssp             T--EEEE-EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEE
T ss_pred             C--eeEE-EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEEEecCCCCcccccee
Confidence            4  3333 44789999998876433222   223455566666655544    999999999 999999887   55667


Q ss_pred             EeCCCCCc------------ceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccc
Q 015198          255 VRRGVDRA------------EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTL  322 (411)
Q Consensus       255 ~~~~~~~~------------~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (411)
                      +..  |..            .|.+++|+|++++|++++.||.|+|||+++++....                        
T Consensus       257 ~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------  310 (368)
T 3mmy_A          257 FKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT------------------------  310 (368)
T ss_dssp             EEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE------------------------
T ss_pred             eee--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE------------------------
Confidence            776  544            699999999999999999999999999998875432                        


Q ss_pred             cCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEecCC
Q 015198          323 ISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVH  391 (411)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~~  391 (411)
                                                      +..+...+..++|+++ ..|++++.||....|.+...+
T Consensus       311 --------------------------------~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          311 --------------------------------SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             --------------------------------CCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred             --------------------------------ecCCCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence                                            2222345677899998 678888888877766655433

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.5e-31  Score=238.84  Aligned_cols=239  Identities=12%  Similarity=0.125  Sum_probs=197.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcE
Q 015198           47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (411)
Q Consensus        47 V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~  126 (411)
                      +++|+||+++ +||+|.|++|+|||+++++......++.|...+.++.|++++.++++++.|     +.|++||+++++.
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~~  101 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKR  101 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCcee
Confidence            5789999986 888888999999999987766666667888889999999999999999988     9999999999887


Q ss_pred             EEEEe-e-----------------------------------------cCceeEEEEcCCeEEEE---EcCeEEEEEcCC
Q 015198          127 IGEFA-F-----------------------------------------RSDVRSVKLSRDRIVVV---LEHKIYVYSFVD  161 (411)
Q Consensus       127 ~~~~~-~-----------------------------------------~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~  161 (411)
                      +..+. |                                         ...+..+.+.+++.+++   .|+.|++||+++
T Consensus       102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            66654 2                                         23456666777776666   689999999987


Q ss_pred             cee----eEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEc--
Q 015198          162 LKL----LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS--  235 (411)
Q Consensus       162 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s--  235 (411)
                      ++.    ......+...+....+.+.....+...+++.++.|++|+...........+...+..+.|+|++..+++++  
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~  261 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF  261 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc
Confidence            653    33444455555556666655554555668899999999998888777788899999999999999877654  


Q ss_pred             CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .|+. |++||+++++++.++.+  |.+.|++++|+|||++|++|+.||+|+|||+.+.+
T Consensus       262 ~d~~-i~iwd~~~~~~~~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          262 AQNQ-LVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TTCC-EEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             CCCE-EEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            7899 99999999999999998  88999999999999999999999999999997654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6e-31  Score=239.42  Aligned_cols=242  Identities=14%  Similarity=0.230  Sum_probs=203.1

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+|...|.+++|+|++++|++|+ |+.|++||+++.+....  +..|...+.++.|++++..+++++.|     +.|
T Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i  131 (312)
T 4ery_A           59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESV  131 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETT-----SCE
T ss_pred             hhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCC-----CcE
Confidence            34678999999999999999999999 99999999997655443  34777889999999999999999988     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      ++||+++++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..... ..+..+.+++++.+|++ 
T Consensus       132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~-  209 (312)
T 4ery_A          132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILA-  209 (312)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSC-CCEEEEEECTTSSEEEE-
T ss_pred             EEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCC-CceEEEEECCCCCEEEE-
Confidence            999999999998887 889999999999998777   699999999999888877643322 23455666667778776 


Q ss_pred             cCCCCeEEEEEcCC-cceEEEeccccceeE---EEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198          193 GLQRGQVRIEHFGL-NMIKLINAHDSHIAC---FTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       193 g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~---l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (411)
                      ++.|+.|++|+... +.+..+.+|...+.+   ....+++.+|++|+.||. |++||+.+++.+..+.+  |...|.+++
T Consensus       210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~--h~~~v~~~~  286 (312)
T 4ery_A          210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQG--HTDVVISTA  286 (312)
T ss_dssp             EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTTCCEEEEECC--CSSCEEEEE
T ss_pred             EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCCchhhhhhhc--cCCcEEEEe
Confidence            56899999998764 556677777665332   333478899999999999 99999999999999988  888999999


Q ss_pred             eCCCCCEEEEEe--CCCcEEEEEcc
Q 015198          269 LSPNVQWLAVAS--DKGTVHIFSLR  291 (411)
Q Consensus       269 ~spdg~~l~s~s--~dg~I~vwd~~  291 (411)
                      |+|++++|++++  .|++|++|+.+
T Consensus       287 ~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          287 CHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ecCcCCceEEEEccCCccEEEecCC
Confidence            999999999987  69999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.7e-32  Score=256.73  Aligned_cols=244  Identities=11%  Similarity=0.153  Sum_probs=190.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc---------eEEeecCCCC------------EEEEEEeccCC
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE---------TFRRDLKSGG------------FRIVEMLFRCN   98 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~---------~~~~~~~~~~------------~~~~~~~~~~~   98 (411)
                      ..|.+.|++++|+|+|++||+|+ ||.|+||++.+...         .....+..|.            ..+.++.|+++
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            45788999999999999999999 99999999986542         1223344666            66889999998


Q ss_pred             e--EEEEecCCCCCCCCCeEEEEECCCCcEE---------------------------------------EEE--eecCc
Q 015198           99 I--LALVGAGDNSQYPPTKVIIWDDHQSRCI---------------------------------------GEF--AFRSD  135 (411)
Q Consensus        99 ~--~~l~s~~~d~~~~d~~i~vwd~~~~~~~---------------------------------------~~~--~~~~~  135 (411)
                      +  ..+++++.|     +.|++||+.+++..                                       ..+  .|...
T Consensus       105 ~~~~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          105 KNAAQFLLSTND-----KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             CSSSEEEEEECS-----SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             CCcceEEEeCCC-----CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence            7  677777777     99999998764432                                       122  27889


Q ss_pred             eeEEEEcCCeEEEE--EcCeEEEEEcCC-ceeeEEE-------eccCCCcceEEEccCCCc-eEEEEecCCCCeEEEEEc
Q 015198          136 VRSVKLSRDRIVVV--LEHKIYVYSFVD-LKLLHQI-------ETLANLRGLCCLSHHSST-SVLACPGLQRGQVRIEHF  204 (411)
Q Consensus       136 i~~~~~~~~~~~~~--~dg~i~iwd~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~l~~~g~~dg~i~i~~~  204 (411)
                      |.+++|+|++.+++  .|+.|++||+++ ++.+..+       ..|..  .+.++.+++++ .+|++ |+.||.|++|+.
T Consensus       180 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s-~~~dg~i~iwd~  256 (447)
T 3dw8_B          180 INSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTE--VITAAEFHPNSCNTFVY-SSSKGTIRLCDM  256 (447)
T ss_dssp             CCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCC--CEEEEEECSSCTTEEEE-EETTSCEEEEET
T ss_pred             eEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCc--ceEEEEECCCCCcEEEE-EeCCCeEEEEEC
Confidence            99999999998888  799999999984 4444432       24444  45566666666 56665 668999999997


Q ss_pred             CCcc-----eEEEecccc------------ceeEEEecCCCCEEEEEcCCCeEEEEEECCC-CceEEEEeCCCCCcc---
Q 015198          205 GLNM-----IKLINAHDS------------HIACFTLTLDGLLLATASTRGTLIRIFNTVD-GTRLQEVRRGVDRAE---  263 (411)
Q Consensus       205 ~~~~-----~~~~~~~~~------------~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~~~~~~~~~~~---  263 (411)
                      ....     +..+..|..            .|.+++|+|+|++|++++. +. |++||+++ ++.+..+..  |...   
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~--~~~~~~~  332 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQV--HEYLRSK  332 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEES--CGGGTTT
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeec--ccccccc
Confidence            6544     577888876            8999999999999999998 98 99999997 888888887  4321   


Q ss_pred             ------------eEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          264 ------------IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       264 ------------v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                                  +..++|+|++++|++++.||.|+|||+.+++..
T Consensus       333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence                        334999999999999999999999999998753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.3e-32  Score=252.22  Aligned_cols=248  Identities=12%  Similarity=0.176  Sum_probs=201.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCc-----ceEEeecCCCCEEEEEEeccCC-eEEEEecCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-----ETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQ  110 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~  110 (411)
                      .....|...|.+++|+|+|++|++|+ |+.++||++....     ......+.+|...+..+.|.++ ...+++++.|  
T Consensus       102 ~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D--  179 (380)
T 3iz6_a          102 HAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD--  179 (380)
T ss_dssp             EEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT--
T ss_pred             eEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCC--
Confidence            34567999999999999999999999 9999999986422     1112234577777888888885 4567888887  


Q ss_pred             CCCCeEEEEECCCCcEEEEEe------ecCceeEEEEcC-CeEEEE---EcCeEEEEEcC-CceeeEEEeccCCCcceEE
Q 015198          111 YPPTKVIIWDDHQSRCIGEFA------FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFV-DLKLLHQIETLANLRGLCC  179 (411)
Q Consensus       111 ~~d~~i~vwd~~~~~~~~~~~------~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~  179 (411)
                         ++|++||+.+++.+..+.      |...|.++.+++ ++.+++   .|+.|++||++ .++.+..+.+|...+..++
T Consensus       180 ---~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~  256 (380)
T 3iz6_a          180 ---QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK  256 (380)
T ss_dssp             ---SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEE
T ss_pred             ---CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEE
Confidence               999999999999988872      678899999987 666666   69999999997 4577888888888666555


Q ss_pred             EccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccc-------cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce
Q 015198          180 LSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHD-------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR  251 (411)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~-------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~  251 (411)
                      ++  |++.+|++ |+.||.|++|+... ..+..+..+.       ..|.+++|+|+|++|++|+.||. |++||+.+++.
T Consensus       257 ~~--p~~~~l~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~~~  332 (380)
T 3iz6_a          257 FF--PDGQRFGT-GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLLAEM  332 (380)
T ss_dssp             EC--TTSSEEEE-ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTTCCE
T ss_pred             Ee--cCCCeEEE-EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCCCce
Confidence            55  45667765 77999999999765 4445554432       24899999999999999999999 99999999998


Q ss_pred             EEEEeC--CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          252 LQEVRR--GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       252 ~~~~~~--~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      +..+..  ..|.+.|.+++|+|||++|++|+.|++|+||++...+
T Consensus       333 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          333 VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            887732  2278899999999999999999999999999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.1e-30  Score=257.35  Aligned_cols=285  Identities=11%  Similarity=0.113  Sum_probs=220.6

Q ss_pred             cccCCCCCCeEEEEEcCCCC-EEEEEe-CCcEEEEecCCCcceEEeecCCCCE---EEEEEeccCC-eEEEEecCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF---RIVEMLFRCN-ILALVGAGDNSQY  111 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~-~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~s~~~d~~~  111 (411)
                      ....+|...|.+++|+|+++ +|++++ |+.|++||+.+.+....  +..+..   .+.++.|+++ +..+++++.|   
T Consensus       154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---  228 (615)
T 1pgu_A          154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSD---  228 (615)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETT---
T ss_pred             eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeCC---
Confidence            44678999999999999998 788888 99999999987554433  446666   8999999999 9999988887   


Q ss_pred             CCCeEEEEECCCCcEEEEE-----eecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccC-----------
Q 015198          112 PPTKVIIWDDHQSRCIGEF-----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA-----------  172 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~-----------  172 (411)
                        +.|++||+.+++.+..+     .|...|.+++|+ ++.+++   .|+.|++||+++++.+..+..+.           
T Consensus       229 --g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (615)
T 1pgu_A          229 --RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV  305 (615)
T ss_dssp             --CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred             --CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence              99999999999999998     688999999999 887776   58999999998877766654431           


Q ss_pred             ----------------------------------CCcc-------------------------------eEEEccCCC--
Q 015198          173 ----------------------------------NLRG-------------------------------LCCLSHHSS--  185 (411)
Q Consensus       173 ----------------------------------~~~~-------------------------------~~~~~~~~~--  185 (411)
                                                        ..+.                               +.++.+.+.  
T Consensus       306 ~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~  385 (615)
T 1pgu_A          306 ATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE  385 (615)
T ss_dssp             EEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTC
T ss_pred             eCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcE
Confidence                                              1000                               011111100  


Q ss_pred             ----------------------------------------------------------------------ceEEEEecCC
Q 015198          186 ----------------------------------------------------------------------TSVLACPGLQ  195 (411)
Q Consensus       186 ----------------------------------------------------------------------~~~l~~~g~~  195 (411)
                                                                                            +.++++ ++.
T Consensus       386 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~  464 (615)
T 1pgu_A          386 YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV-GLE  464 (615)
T ss_dssp             CEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE-EET
T ss_pred             EEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE-eec
Confidence                                                                                  122222 223


Q ss_pred             -CCeEEEEEcCCcce--EEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC-
Q 015198          196 -RGQVRIEHFGLNMI--KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-  271 (411)
Q Consensus       196 -dg~i~i~~~~~~~~--~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-  271 (411)
                       |+.|++|+......  ..+..|...|.+++|+|++++|++++.|+. |++||+.+++.+..+... |...|++++|+| 
T Consensus       465 ~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~-h~~~v~~~~~sp~  542 (615)
T 1pgu_A          465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRWAF-RTSKINAISWKPA  542 (615)
T ss_dssp             TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCSCC-CSSCEEEEEECCC
T ss_pred             CCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCCCcceeEeecC-CCCceeEEEEcCc
Confidence             56666666555443  455678899999999999999999999999 999999999988776543 678999999999 


Q ss_pred             ---------CCCEEEEEeCCCcEEEEEccccc-cCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccc
Q 015198          272 ---------NVQWLAVASDKGTVHIFSLRVRV-VGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGV  341 (411)
Q Consensus       272 ---------dg~~l~s~s~dg~I~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (411)
                               ++++|++++.||.|++||++++. ...                                            
T Consensus       543 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------------------------------------------  578 (615)
T 1pgu_A          543 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK--------------------------------------------  578 (615)
T ss_dssp             C------CCSCCEEEEEETTSCEEEEESSCTTCCEE--------------------------------------------
T ss_pred             cccccccccCCCEEEEEcCCCcEEEEECCCCceech--------------------------------------------
Confidence                     99999999999999999998873 221                                            


Q ss_pred             cCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          342 LPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                                  .+..+...+..++|++++.|++++.||.|++|+++.
T Consensus       579 ------------~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          579 ------------ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ------------ETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred             ------------hhhcCccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence                        111122466778999996699999999999999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.4e-31  Score=246.44  Aligned_cols=245  Identities=12%  Similarity=0.025  Sum_probs=197.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccCCeE-EEEecCCCCCCCCCe
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTK  115 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~d~~  115 (411)
                      ...+|.+.|++++|+|++++|++++ |+.|+||++.+... .....+..+...+.++.|++++. .+++++.|     +.
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~   80 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ-----GE   80 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT-----SC
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC-----Ce
Confidence            3558999999999999999999999 99999999987551 11111226777899999999988 88888887     99


Q ss_pred             EEEEEC-CCCcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCC---------ceeeEEEeccCCCcceEEE
Q 015198          116 VIIWDD-HQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD---------LKLLHQIETLANLRGLCCL  180 (411)
Q Consensus       116 i~vwd~-~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~  180 (411)
                      |++||+ .+++......  |...|.+++|+| +..++   .|+.|++||+++         ++.+..+. +..  .+.++
T Consensus        81 i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~--~v~~~  156 (342)
T 1yfq_A           81 ILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN--KIFTM  156 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC--CEEEE
T ss_pred             EEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC--ceEEE
Confidence            999999 8887755555  889999999999 55555   699999999987         66665554 444  45566


Q ss_pred             ccCCCceEEEEecCCCCeEEEEEcCC-c---ceEEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCC------
Q 015198          181 SHHSSTSVLACPGLQRGQVRIEHFGL-N---MIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDG------  249 (411)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~i~i~~~~~-~---~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~------  249 (411)
                      .+++++  +++ ++.++.|++|+... .   .......|...+.+++|+| ++++|++++.||. |++|+++..      
T Consensus       157 ~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~  232 (342)
T 1yfq_A          157 DTNSSR--LIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNS  232 (342)
T ss_dssp             EECSSE--EEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTC
T ss_pred             EecCCc--EEE-EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCccccc
Confidence            666765  443 56899999999876 2   2234457888999999999 9999999999999 999999887      


Q ss_pred             ceEEEEeCCC-------CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          250 TRLQEVRRGV-------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       250 ~~~~~~~~~~-------~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +.+..+..+.       |...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  286 (342)
T 1yfq_A          233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence            7777887731       1338999999999999999999999999999988754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.7e-30  Score=245.21  Aligned_cols=275  Identities=15%  Similarity=0.139  Sum_probs=224.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      .++.|+|+++ ++||+|.|++|+|||..+++......++.+...|.++.|++++.++++|+.|     +.|++||+.+++
T Consensus       107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~  180 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQK  180 (420)
T ss_dssp             TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTE
T ss_pred             cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCc
Confidence            4577999976 5899988999999999987766656666788889999999999999999988     999999999999


Q ss_pred             EEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCc-eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEE
Q 015198          126 CIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE  202 (411)
Q Consensus       126 ~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~  202 (411)
                      .+..+. |...+.++.+++.-.... .|+.+++||.... ..+..+..|..  .+..+.+.+++.++++ ++.|+.+++|
T Consensus       181 ~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~--~~~~~~~~~~g~~l~s-~~~D~~v~i~  257 (420)
T 4gga_A          181 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLAS-GGNDNLVNVW  257 (420)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTTSSEEEE-EETTSCEEEE
T ss_pred             EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccc--ceeeeeecCCCCeeee-eeccccceEE
Confidence            999988 899999999987644444 7999999998764 55567777776  4455566666777776 5689999998


Q ss_pred             EcCCc-----ceEEEeccccceeEEEecCCCC-EEEE--EcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC
Q 015198          203 HFGLN-----MIKLINAHDSHIACFTLTLDGL-LLAT--ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (411)
Q Consensus       203 ~~~~~-----~~~~~~~~~~~i~~l~~sp~g~-~l~s--~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (411)
                      +....     .+.....|...|.+++|+|++. ++++  |+.|+. |++||+.+++++..+..   ...+.++.|+++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~  333 (420)
T 4gga_A          258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDA---HSQVCSILWSPHYK  333 (420)
T ss_dssp             ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEEC---SSCEEEEEEETTTT
T ss_pred             eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeecc---ccceeeeeecCCCC
Confidence            87542     3566788999999999999765 5554  467999 99999999999988875   45789999999999


Q ss_pred             EEEEEe--CCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccce
Q 015198          275 WLAVAS--DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF  352 (411)
Q Consensus       275 ~l~s~s--~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (411)
                      .|++++  .|+.|+|||+.++++..                                                       
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~~~~v~-------------------------------------------------------  358 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPTMAKVA-------------------------------------------------------  358 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEEE-------------------------------------------------------
T ss_pred             eEEEEEecCCCEEEEEECCCCcEEE-------------------------------------------------------
Confidence            988765  78999999999887543                                                       


Q ss_pred             EEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          353 AQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                       +++-+.+.+..++|+++ ..|++++.||.|++|++.+
T Consensus       359 -~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          359 -ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             -EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             -EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence             23333456778899998 6788889999999999865

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=260.11  Aligned_cols=280  Identities=14%  Similarity=0.163  Sum_probs=220.1

Q ss_pred             CCCCeEEEEEcCCCC-EEEEE----------e-CCcEEEEecCCCcce-EEeecCCCCEEEEEEeccCCeEEEEecCCCC
Q 015198           43 DEIELISVSWNQDYG-CFAAG----------T-SCGFRIYNCEPFKET-FRRDLKSGGFRIVEMLFRCNILALVGAGDNS  109 (411)
Q Consensus        43 h~~~V~~l~~s~~g~-~la~g----------~-dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  109 (411)
                      +...|.+++|+|+++ +|++|          + |+.|+||++.+.... ....+ .+...+.++.|++++.++++++.| 
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-   88 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDN-   88 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESS-
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccC-
Confidence            345789999999987 99999          7 899999999875432 11222 567789999999999999998887 


Q ss_pred             CCCCCeEEEEECCC----CcEEEEEe-ecCceeEEEEcCC-eEEEE---EcCeEEEEEcCCce------eeEEE---ecc
Q 015198          110 QYPPTKVIIWDDHQ----SRCIGEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLK------LLHQI---ETL  171 (411)
Q Consensus       110 ~~~d~~i~vwd~~~----~~~~~~~~-~~~~i~~~~~~~~-~~~~~---~dg~i~iwd~~~~~------~~~~~---~~~  171 (411)
                          +.|++||+.+    .+.+..+. |...|.+++|+|+ +.+++   .|+.|++||+.+++      ....+   ..|
T Consensus        89 ----g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  164 (416)
T 2pm9_A           89 ----GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS  164 (416)
T ss_dssp             ----SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred             ----CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence                9999999887    35666666 8999999999998 66665   68999999998876      33222   445


Q ss_pred             CCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEecc------ccceeEEEecCCC-CEEEEEcCCC---eE
Q 015198          172 ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAH------DSHIACFTLTLDG-LLLATASTRG---TL  240 (411)
Q Consensus       172 ~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~------~~~i~~l~~sp~g-~~l~s~s~dg---~~  240 (411)
                      ...+..++++++. +.++++ ++.||.|++|+... +.+..+..+      ...|.+++|+|++ .+|++++.|+   . 
T Consensus       165 ~~~v~~~~~~~~~-~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~-  241 (416)
T 2pm9_A          165 VDEVISLAWNQSL-AHVFAS-AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS-  241 (416)
T ss_dssp             SCCCCEEEECSSC-TTEEEE-ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC-
T ss_pred             CCCeeEEEeCCCC-CcEEEE-EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce-
Confidence            5545555554432 345554 67899999999765 455666665      7899999999997 6899999998   9 


Q ss_pred             EEEEECCCC-ceEEEEe-CCCCCcceEEEEeCC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCC
Q 015198          241 IRIFNTVDG-TRLQEVR-RGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSS  317 (411)
Q Consensus       241 I~vwd~~~~-~~~~~~~-~~~~~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (411)
                      |++||++++ +.+..+. .  |...|.+++|+| ++++|++++.||.|++||+++++...                    
T Consensus       242 i~~~d~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~--------------------  299 (416)
T 2pm9_A          242 ILIWDLRNANTPLQTLNQG--HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS--------------------  299 (416)
T ss_dssp             CCEEETTSTTSCSBCCCSC--CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE--------------------
T ss_pred             EEEEeCCCCCCCcEEeecC--ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce--------------------
Confidence            999999987 5565665 5  788999999999 99999999999999999999876432                    


Q ss_pred             CCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC--CEEEEEEeCCcEEEEEEec
Q 015198          318 SFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~~~~~~~~~  389 (411)
                                                          .+..+...+..++|+++  ..|++++.||.|++|++..
T Consensus       300 ------------------------------------~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          300 ------------------------------------QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             ------------------------------------EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             ------------------------------------eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence                                                33334445667889997  4778888899999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.9e-30  Score=275.71  Aligned_cols=319  Identities=12%  Similarity=0.149  Sum_probs=240.4

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+|.+.|++++|+|+|++|++|+ ||.|+|||+.+.+....  +..|...+.++.|++++.++++++.|     +.|+
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d-----~~v~  682 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD--IKAHEDEVLCCAFSSDDSYIATCSAD-----KKVK  682 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEE
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE--eccCCCCEEEEEEecCCCEEEEEeCC-----CeEE
Confidence            4678999999999999999999999 99999999998665544  44788899999999999999999888     9999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCC--eEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~--~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      +||+.+++.+..+. |...|.+++|+|+  +.+++   .|+.|++||+.+++.+..+..|...+..++  +++++.++++
T Consensus       683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~--~sp~~~~l~s  760 (1249)
T 3sfz_A          683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR--FSPDDELLAS  760 (1249)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEE--ECSSTTEEEE
T ss_pred             EEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEE--EecCCCEEEE
Confidence            99999999999988 8999999999994  44555   689999999999999999988887555544  4556667765


Q ss_pred             ecCCCCeEEEEEcCCcc-e------------------------------------------------------EEE-ecc
Q 015198          192 PGLQRGQVRIEHFGLNM-I------------------------------------------------------KLI-NAH  215 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~~-~------------------------------------------------------~~~-~~~  215 (411)
                       ++.||.|++|+..... .                                                      ..+ .+|
T Consensus       761 -~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~  839 (1249)
T 3sfz_A          761 -CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH  839 (1249)
T ss_dssp             -EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred             -EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence             6689999999865321 1                                                      111 267


Q ss_pred             ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      ...|.+++|+|+++++++++.|+. |++||+.++..+..+.+  |...|.+++|+|+|++|++++.||.|++|++.+...
T Consensus       840 ~~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~  916 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRG--HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK  916 (1249)
T ss_dssp             SSCCCEEEECSSTTEEEEECSSSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeeecCC--CccceEEEEECCCCCEEEEEeCCCeEEEEEccccce
Confidence            889999999999999999999999 99999999999988887  888999999999999999999999999999987654


Q ss_pred             CCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEE
Q 015198          296 GEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVV  374 (411)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  374 (411)
                      .........     .+ .............    .......        .+. .........+......++|+++ +.++
T Consensus       917 ~~~~~~~~~-----~~-~~~~~~~~~~~~~----~~~~~~~--------~~~-~~~~~~~~~~~~~i~~~~~sp~g~~l~  977 (1249)
T 3sfz_A          917 NSAIVLKQE-----ID-VVFQENETMVLAV----DNIRGLQ--------LIA-GKTGQIDYLPEAQVSCCCLSPHLEYVA  977 (1249)
T ss_dssp             CCSSSEEEE-----EE-EEEETTEEEEEEE----ESSSSEE--------EEE-ESSCCEEEECCSCEEEEEECTTSSEEE
T ss_pred             eeeecccce-----ee-EEEcCCCcEEEEe----cCCcceE--------EEe-cCcceEEEcccCcEEEEEEcCCCCEEE
Confidence            321111100     00 0000000000000    0000000        000 0000112233456778899998 7788


Q ss_pred             EEEeCCcEEEEEEec
Q 015198          375 IVSMDGSFYRCSFDP  389 (411)
Q Consensus       375 ~~~~dg~~~~~~~~~  389 (411)
                      +++.||.+++|.+..
T Consensus       978 ~g~~~g~i~i~d~~~  992 (1249)
T 3sfz_A          978 FGDEDGAIKIIELPN  992 (1249)
T ss_dssp             EEETTSCCEEEETTT
T ss_pred             EEcCCCCEEEEEcCC
Confidence            888899999998875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.5e-31  Score=260.57  Aligned_cols=279  Identities=11%  Similarity=0.126  Sum_probs=227.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCC----cceEEeecCCCCEE-EEEEeccC--CeEEEEecCCCCCCC
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPF----KETFRRDLKSGGFR-IVEMLFRC--NILALVGAGDNSQYP  112 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~----~~~~~~~~~~~~~~-~~~~~~~~--~~~~l~s~~~d~~~~  112 (411)
                      ...|.+.|.+++|+|++++|++++++.|+||++++.    +....  +..|... +.++.|+|  ++.++++++.|    
T Consensus        14 ~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~--~~~h~~~~v~~~~~sp~~~~~~l~s~~~d----   87 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQ--FTGHGSSVVTTVKFSPIKGSQYLCSGDES----   87 (615)
T ss_dssp             CCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEE--ECTTTTSCEEEEEECSSTTCCEEEEEETT----
T ss_pred             CCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceE--EecCCCceEEEEEECcCCCCCEEEEecCC----
Confidence            346889999999999999999999999999999875    44333  4478888 99999999  99999999988    


Q ss_pred             CCeEEEEECCCC--------cEEEEEe-ecCceeEEEEcCCeEEEE---Ec----CeEEEEEcCCceeeEEEeccCCCcc
Q 015198          113 PTKVIIWDDHQS--------RCIGEFA-FRSDVRSVKLSRDRIVVV---LE----HKIYVYSFVDLKLLHQIETLANLRG  176 (411)
Q Consensus       113 d~~i~vwd~~~~--------~~~~~~~-~~~~i~~~~~~~~~~~~~---~d----g~i~iwd~~~~~~~~~~~~~~~~~~  176 (411)
                       +.|++||+.++        +.+..+. |...|.+++|+|++.+++   .+    +.|++||  .++.+..+..|...+.
T Consensus        88 -g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~  164 (615)
T 1pgu_A           88 -GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN  164 (615)
T ss_dssp             -SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred             -CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence             99999998754        5666666 889999999999998887   23    5788888  5677788888777544


Q ss_pred             eEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEecccc---ceeEEEecCC-CCEEEEEcCCCeEEEEEECCCCce
Q 015198          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDS---HIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTR  251 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~---~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~  251 (411)
                        ++.+++++..++++++.|+.|++|+... +.+..+..|..   .|.+++|+|+ +++|++++.|+. |++||+.+++.
T Consensus       165 --~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~  241 (615)
T 1pgu_A          165 --ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEF  241 (615)
T ss_dssp             --EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCE
T ss_pred             --EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCE
Confidence              4555555553333467899999998654 56677888999   9999999999 999999999999 99999999999


Q ss_pred             EEEE-e---CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCC
Q 015198          252 LQEV-R---RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPST  327 (411)
Q Consensus       252 ~~~~-~---~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (411)
                      +..+ .   .  |...|.+++|+ ++++|++++.|+.|++||+++++...                              
T Consensus       242 ~~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~------------------------------  288 (615)
T 1pgu_A          242 LKYIEDDQEP--VQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ------------------------------  288 (615)
T ss_dssp             EEECCBTTBC--CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE------------------------------
T ss_pred             eEEecccccc--cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE------------------------------
Confidence            9888 4   4  88899999999 99999999999999999999876542                              


Q ss_pred             CCCCCCcccccccccCcccccccceEEEEeC----CCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          328 GANPGSSLSFMRGVLPKYFSSEWSFAQFHIP----EVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                                                .+..+    ......+.|...+.+++++.||.+++|.+..
T Consensus       289 --------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          289 --------------------------KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             --------------------------EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred             --------------------------EEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence                                      22222    1234556676568899999999999998764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.6e-30  Score=243.64  Aligned_cols=247  Identities=12%  Similarity=0.141  Sum_probs=200.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ..+|...|++|+|+|+|++|++|+ |+.|+|||+++.+.+..  +..|...+.++.+++.  .+++++.|     +.+++
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~--~~~h~~~v~~~s~~~~--~l~sgs~d-----~~i~~  213 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARVGSLSWNSY--ILSSGSRS-----GHIHH  213 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEETT--EEEEEETT-----SEEEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE--EeCCCCceEEEeeCCC--EEEEEeCC-----CceeE
Confidence            357888999999999999999999 99999999998665444  3477778888877654  67777777     99999


Q ss_pred             EECCCC-cEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce----eeEEEeccCCCcceEEEccCCCceEE
Q 015198          119 WDDHQS-RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK----LLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       119 wd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      ||.... ..+..+. |...+..+.+++++.+++   .|+.|++|+..+++    .+.....+...+..+++.+.....+.
T Consensus       214 ~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la  293 (420)
T 4gga_A          214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  293 (420)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred             eeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence            998764 4455666 899999999999998888   69999999997764    34556667766666666666554444


Q ss_pred             EEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEc--CCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198          190 ACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS--TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s--~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (411)
                      ..+|+.|+.|++|+...........+...+.++.|+|+++.|++++  .|+. |+|||+.+++++.++.+  |.+.|+++
T Consensus       294 ~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~-I~iwd~~~~~~v~~l~g--H~~~V~~l  370 (420)
T 4gga_A          294 TGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLSL  370 (420)
T ss_dssp             EEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEEE
T ss_pred             EEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE-EEEEECCCCcEEEEEcC--CCCCEEEE
Confidence            4457789999999987655444445567788999999999888764  7899 99999999999999998  88999999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEccccccCCC
Q 015198          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGED  298 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~  298 (411)
                      +|+|||++|++|+.|++|+|||+....+.+.
T Consensus       371 ~~spdg~~l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          371 TMSPDGATVASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             EECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred             EEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence            9999999999999999999999987765543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-30  Score=244.67  Aligned_cols=245  Identities=12%  Similarity=0.118  Sum_probs=196.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      .|...|.+++|+|++++|++|+ ||.|++||+.+.+....  +..+...+.++.|+++  .+++++.|     +.|++||
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~--~l~~~~~d-----g~i~i~d  202 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT--MAGHQARVGCLSWNRH--VLSSGSRS-----GAIHHHD  202 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEEETT--EEEEEETT-----SEEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE--ecCCCCceEEEEECCC--EEEEEcCC-----CCEEEEe
Confidence            4889999999999999999999 99999999987665444  3477788888888654  66677776     9999999


Q ss_pred             CC-CCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe-cC
Q 015198          121 DH-QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP-GL  194 (411)
Q Consensus       121 ~~-~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~  194 (411)
                      +. .+..+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+..++++++... +++++ |+
T Consensus       203 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-ll~~~~gs  281 (401)
T 4aez_A          203 VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN-LLATGGGT  281 (401)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTT-EEEEECCT
T ss_pred             cccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCC-EEEEecCC
Confidence            98 456666776 899999999999998887   6899999999999999888888886666666665443 33332 34


Q ss_pred             CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEE--EcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198          195 QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLAT--ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (411)
Q Consensus       195 ~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s--~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (411)
                      .|+.|++|+...........+...|.+++|+|++++|++  |+.||. |++||+.+++.........|...|.+++|+|+
T Consensus       282 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~-i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d  360 (401)
T 4aez_A          282 MDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD  360 (401)
T ss_dssp             TTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCE-EEEEEEETTEEEEEEEEECCSSCCCEEEECTT
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCc-EEEEecCCccceeEEEecCCCCCEEEEEECCC
Confidence            899999999765444333357788999999999999998  558999 99999998766555332228889999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccccccCC
Q 015198          273 VQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       273 g~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      +++|++++.||.|++|++.+++...
T Consensus       361 g~~l~s~~~dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          361 GRILSTAASDENLKFWRVYDGDHVK  385 (401)
T ss_dssp             SSEEEEECTTSEEEEEECCC-----
T ss_pred             CCEEEEEeCCCcEEEEECCCCcccc
Confidence            9999999999999999999988654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.1e-30  Score=243.45  Aligned_cols=279  Identities=11%  Similarity=0.214  Sum_probs=217.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ..+|...|.+++|  ++++|++|+ ||.|++||+.+.+....  +..|...+.++.|  ++..+++++.|     |.|++
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~--~~~~l~sg~~d-----g~i~v  197 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI--LTGHTGSVLCLQY--DERVIITGSSD-----STVRV  197 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE--ECCCSSCEEEEEC--CSSEEEEEETT-----SCEEE
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEE--EcCCCCcEEEEEE--CCCEEEEEcCC-----CeEEE
Confidence            4567788999887  789999999 99999999987665444  4477888888888  55577777777     99999


Q ss_pred             EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceee---EEEeccCCCcceEEEccCCCceEEEEec
Q 015198          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLL---HQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      ||+.+++.+..+. |...|.+++|+++....+ .|+.|++||+.+++..   ..+..|...+.  ++.++  +.++++ |
T Consensus       198 wd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~--~~~~~--~~~l~s-~  272 (435)
T 1p22_A          198 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN--VVDFD--DKYIVS-A  272 (435)
T ss_dssp             EESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE--EEEEE--TTEEEE-E
T ss_pred             EECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE--EEEeC--CCEEEE-E
Confidence            9999999999988 899999999987643333 7999999999887655   55566666444  44443  346655 6


Q ss_pred             CCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198          194 LQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (411)
Q Consensus       194 ~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (411)
                      +.||.|++|+.. ++.+..+.+|...|.++++  ++++|++|+.||. |++||+++++.+..+..  |...|.+++|  +
T Consensus       273 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~~~--~  345 (435)
T 1p22_A          273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF--D  345 (435)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEC--C
T ss_pred             eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEeC--CcCcEEEEEe--c
Confidence            689999999865 4677888999999999998  5689999999999 99999999999999988  8889999999  7


Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccce
Q 015198          273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF  352 (411)
Q Consensus       273 g~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (411)
                      +.+|++|+.||.|++||+.+++........                                               ...
T Consensus       346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-----------------------------------------------~~~  378 (435)
T 1p22_A          346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGT-----------------------------------------------LCL  378 (435)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHTSTTSCTTT-----------------------------------------------TEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCCCccccccc-----------------------------------------------hhe
Confidence            899999999999999999988643200000                                               011


Q ss_pred             EEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          353 AQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                      ..+..+.+.+..++| ....|++++.||.|++|++..
T Consensus       379 ~~~~~h~~~v~~l~~-~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          379 RTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             EEECCCSSCCCCEEE-CSSCEEECCSSSEEEEEC---
T ss_pred             eeccCCCCCeEEEEe-CCCEEEEEeCCCEEEEEECCC
Confidence            223333345556677 347799999999999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.98  E-value=3e-31  Score=246.09  Aligned_cols=238  Identities=13%  Similarity=0.168  Sum_probs=198.2

Q ss_pred             CCCCCeEEEEEcCC----CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCe
Q 015198           42 VDEIELISVSWNQD----YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTK  115 (411)
Q Consensus        42 ~h~~~V~~l~~s~~----g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~  115 (411)
                      .|...|++++|+|+    +++|++|+ ||.|++||+.+.+....  +..+...+.++.|++ ++..+++++.|     +.
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~s~~~d-----g~  139 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH--YVGHGNAINELKFHPRDPNLLLSVSKD-----HA  139 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE--EESCCSCEEEEEECSSCTTEEEEEETT-----SC
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee--ecCCCCcEEEEEECCCCCCEEEEEeCC-----Ce
Confidence            47789999999999    67899999 99999999997665444  447888899999999 88888998887     99


Q ss_pred             EEEEECCCCcEEEEE---e-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEec------------------
Q 015198          116 VIIWDDHQSRCIGEF---A-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET------------------  170 (411)
Q Consensus       116 i~vwd~~~~~~~~~~---~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~------------------  170 (411)
                      |++||+.+++.+..+   . |...|.+++|+|++.+++   .|+.|++||+++++.+..+..                  
T Consensus       140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            999999999999988   3 899999999999998777   689999999988765543332                  


Q ss_pred             ----------cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC---------------cceEEEeccccceeEEEec
Q 015198          171 ----------LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---------------NMIKLINAHDSHIACFTLT  225 (411)
Q Consensus       171 ----------~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~---------------~~~~~~~~~~~~i~~l~~s  225 (411)
                                |...+..+++.    +.++++ ++.|+.|++|+...               ..+..+..|...|.+++|+
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~----~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  294 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL----GDLILS-KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS  294 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE----TTEEEE-ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE
T ss_pred             ccCccccccCCcceEEEEEEc----CCEEEE-EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc
Confidence                      66655555555    335554 66899999998764               2366778899999999999


Q ss_pred             CC--CCEEEEEcCCCeEEEEEECCCCc----eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          226 LD--GLLLATASTRGTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       226 p~--g~~l~s~s~dg~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      |+  +++|++++.||. |++||+.+++    ....+..+.+...|.+++|+|++++|++++.||.|++||+.+
T Consensus       295 ~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          295 MDFWQKMLALGNQVGK-LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             ECTTSSEEEEECTTSC-EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCCCcEEEEEecCCc-EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            99  999999999999 9999999875    444677644478999999999999999999999999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.98  E-value=3.3e-30  Score=233.05  Aligned_cols=248  Identities=12%  Similarity=0.109  Sum_probs=193.9

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC--CcEEEEEe-ecCceeEEEEcCC--eEEEE---EcCeE
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ--SRCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKI  154 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~--~~~~~~~~-~~~~i~~~~~~~~--~~~~~---~dg~i  154 (411)
                      +.+|...+.++.|++++..+++++.|     ++|++||+..  .+.+..+. |...|.+++|+++  +.+++   .|++|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            34788889999999999999999988     9999999864  36677777 9999999999863  66665   69999


Q ss_pred             EEEEcCCce--eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc---ceEEEeccccceeEEEecCC--
Q 015198          155 YVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLD--  227 (411)
Q Consensus       155 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~l~~sp~--  227 (411)
                      ++||+++++  .+..+..|...+..++++++..+.+|++ |+.|+.|++|+....   ....+.+|...|.+++|+|+  
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s-~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  158 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEE-EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence            999998774  5566677777666666665533667765 668999999987653   24567899999999999997  


Q ss_pred             -----------CCEEEEEcCCCeEEEEEECCCCc----eEEEEeCCCCCcceEEEEeCCCC---CEEEEEeCCCcEEEEE
Q 015198          228 -----------GLLLATASTRGTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPNV---QWLAVASDKGTVHIFS  289 (411)
Q Consensus       228 -----------g~~l~s~s~dg~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spdg---~~l~s~s~dg~I~vwd  289 (411)
                                 +++|++|+.|+. |++||+++++    ....+.+  |...|.+++|+|++   ++|++++.|++|+|||
T Consensus       159 ~~~~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          159 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             -----------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             cccccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence                       579999999999 9999998876    5566776  88899999999985   8999999999999999


Q ss_pred             ccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEcc
Q 015198          290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS  369 (411)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (411)
                      ++++.....                                 ..       .+.           .......+..++|++
T Consensus       236 ~~~~~~~~~---------------------------------~~-------~~~-----------~~~~~~~v~~~~~s~  264 (297)
T 2pm7_B          236 QDNEQGPWK---------------------------------KT-------LLK-----------EEKFPDVLWRASWSL  264 (297)
T ss_dssp             ESSTTSCCE---------------------------------EE-------ESS-----------SSCCSSCEEEEEECS
T ss_pred             eCCCCCccc---------------------------------ee-------eee-----------cccCCCcEEEEEECC
Confidence            987532100                                 00       000           000123567789999


Q ss_pred             C-CEEEEEEeCCcEEEEEEecC
Q 015198          370 Q-NTVVIVSMDGSFYRCSFDPV  390 (411)
Q Consensus       370 ~-~~~~~~~~dg~~~~~~~~~~  390 (411)
                      + +.|++++.||.|++|....+
T Consensus       265 ~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          265 SGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             SSCCEEEEETTSCEEEEEECTT
T ss_pred             CCCEEEEEcCCCcEEEEEECCC
Confidence            8 67888889999999998763

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.98  E-value=1.1e-30  Score=245.54  Aligned_cols=244  Identities=16%  Similarity=0.161  Sum_probs=202.4

Q ss_pred             ccccCCCCCCeEEEEEcCC----C---CEEEEEe-CCcEEEEecCCCcc-----eEEeecCCC-----CEEEEEEecc--
Q 015198           37 TAFSDVDEIELISVSWNQD----Y---GCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSG-----GFRIVEMLFR--   96 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~----g---~~la~g~-dg~i~iw~~~~~~~-----~~~~~~~~~-----~~~~~~~~~~--   96 (411)
                      .....+|...|.+++|+|+    +   ++|++++ |+.|++|++.+...     ...  +..+     ...+.++.|+  
T Consensus        55 ~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~  132 (397)
T 1sq9_A           55 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK--LDLLDSDMKKHSFWALKWGAS  132 (397)
T ss_dssp             EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE--ECCSCTTGGGSCEEEEEEECC
T ss_pred             ceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee--ecccccccCCCcEEEEEEeec
Confidence            3456689999999999999    9   9999999 99999999987554     333  3244     4788899999  


Q ss_pred             --CCeEE-EEecCCCCCCCCCeEEEEECCC------CcEEE-----EEe--------ecCceeEEEEcCCeEEEE---Ec
Q 015198           97 --CNILA-LVGAGDNSQYPPTKVIIWDDHQ------SRCIG-----EFA--------FRSDVRSVKLSRDRIVVV---LE  151 (411)
Q Consensus        97 --~~~~~-l~s~~~d~~~~d~~i~vwd~~~------~~~~~-----~~~--------~~~~i~~~~~~~~~~~~~---~d  151 (411)
                        +++.. +++++.|     +.|++||+.+      ++.+.     .+.        |...|.+++|+|++ +++   .|
T Consensus       133 ~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d  206 (397)
T 1sq9_A          133 NDRLLSHRLVATDVK-----GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN  206 (397)
T ss_dssp             C----CEEEEEEETT-----SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT
T ss_pred             cCCCCceEEEEEeCC-----CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC
Confidence              88888 8888887     9999999888      65554     553        68899999999999 666   68


Q ss_pred             CeEEEEEcCCceeeEEEec---c---CCCcceEEEccCCCceEEEEecCCC---CeEEEEEcC-CcceEEEec-------
Q 015198          152 HKIYVYSFVDLKLLHQIET---L---ANLRGLCCLSHHSSTSVLACPGLQR---GQVRIEHFG-LNMIKLINA-------  214 (411)
Q Consensus       152 g~i~iwd~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~l~~~g~~d---g~i~i~~~~-~~~~~~~~~-------  214 (411)
                      +.|++||+++++.+..+..   |   ...  +.++.+++++.+|++ ++.|   |.|++|+.. .+.+..+..       
T Consensus       207 g~i~i~d~~~~~~~~~~~~~~~h~~~~~~--i~~i~~~~~~~~l~~-~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~  283 (397)
T 1sq9_A          207 GTVQISELSTLRPLYNFESQHSMINNSNS--IRSVKFSPQGSLLAI-AHDSNSFGCITLYETEFGERIGSLSVPTHSSQA  283 (397)
T ss_dssp             SEEEEEETTTTEEEEEEECCC---CCCCC--EEEEEECSSTTEEEE-EEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred             CcEEEEECCCCceeEEEeccccccccCCc--cceEEECCCCCEEEE-EecCCCCceEEEEECCCCcccceeccCcccccc
Confidence            9999999999999999987   6   664  455555666677776 5578   999999865 566777888       


Q ss_pred             ------cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe------CCCC---------------CcceEEE
Q 015198          215 ------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR------RGVD---------------RAEIYSI  267 (411)
Q Consensus       215 ------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~------~~~~---------------~~~v~~l  267 (411)
                            |...|.+++|+|++++|++++.|+. |++||+++++.+..+.      .  |               ...|.++
T Consensus       284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~v~~~  360 (397)
T 1sq9_A          284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDDIE--IEEDILAVDEHGDSLAEPGVFDV  360 (397)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEECCGGGCS--SGGGCCCBCTTSCBCSSCCEEEE
T ss_pred             cccccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecccCccc--chhhhhccccccccccCCceeEE
Confidence                  9999999999999999999999999 9999999999999998      5  5               7899999


Q ss_pred             EeCCCC----------CEEEEEeCCCcEEEEEccccc
Q 015198          268 ALSPNV----------QWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       268 ~~spdg----------~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      +|+|++          ++|++++.||.|++|++++++
T Consensus       361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            999998          799999999999999998874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.98  E-value=6.3e-29  Score=238.71  Aligned_cols=241  Identities=13%  Similarity=0.145  Sum_probs=194.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEecc--CCeEEEEecCCCCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR--CNILALVGAGDNSQYPPT  114 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~d~  114 (411)
                      ....+|.+.|++++|+|++ +|++|+ ||.|++||+++.+....  +..|...+.++.+.  +++..+++++.|     +
T Consensus       156 ~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~l~s~s~d-----~  227 (464)
T 3v7d_B          156 LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNIKYIVTGSRD-----N  227 (464)
T ss_dssp             EEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEEESSSCEEEEEEETT-----S
T ss_pred             EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE--ECCCCCccEEEEEecCCCCCEEEEEcCC-----C
Confidence            3456899999999999988 888888 99999999998655443  33566666666665  688889999888     9


Q ss_pred             eEEEEECCCCcE-----------------------EEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEe
Q 015198          115 KVIIWDDHQSRC-----------------------IGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIE  169 (411)
Q Consensus       115 ~i~vwd~~~~~~-----------------------~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~  169 (411)
                      .|++||+.+++.                       +..+. |...+.++..+.+....+ .|+.|++||+++++.+..+.
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  307 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS  307 (464)
T ss_dssp             CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence            999999887753                       33333 677787775554433333 69999999999999999998


Q ss_pred             ccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198          170 TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (411)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (411)
                      .|...+..++  +++++..+++ |+.||.|++|+.. ++.+..+.+|...|.+++|+  +.+|++++.||. |++||+.+
T Consensus       308 ~~~~~v~~~~--~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~  381 (464)
T 3v7d_B          308 GHTDRIYSTI--YDHERKRCIS-ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDAND  381 (464)
T ss_dssp             CCSSCEEEEE--EETTTTEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTT
T ss_pred             CCCCCEEEEE--EcCCCCEEEE-EeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCC
Confidence            8877555444  4555667765 6689999999974 67788889999999999997  579999999999 99999999


Q ss_pred             CceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      ++....+.   +...+..++|++++++|++++ ||.|++||+++++..
T Consensus       382 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          382 YSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             CCEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred             Cceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence            88776665   555778889999999999998 899999999998765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=2.3e-30  Score=236.18  Aligned_cols=246  Identities=15%  Similarity=0.153  Sum_probs=191.8

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc--EEEEEe-ecCceeEEEEcCC--eEEEE---EcCeE
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKI  154 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~--~~~~~~-~~~~i~~~~~~~~--~~~~~---~dg~i  154 (411)
                      +.+|...+.++.|++++..|++++.|     ++|++||+.+++  .+..+. |...|.+++|+++  +.+++   .|+.|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v   83 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV   83 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence            44788889999999999999999988     999999998875  355666 8999999999863  55555   69999


Q ss_pred             EEEEcCCc--eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc----eEEEeccccceeEEEecCC-
Q 015198          155 YVYSFVDL--KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINAHDSHIACFTLTLD-  227 (411)
Q Consensus       155 ~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~----~~~~~~~~~~i~~l~~sp~-  227 (411)
                      ++||++++  +.+..+..|...+..++++++.++.+|++ |+.|+.|++|+.....    ...+.+|...|.+++|+|+ 
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence            99999887  35666777888777777777655667765 7799999999887542    3445688999999999997 


Q ss_pred             ----------------CCEEEEEcCCCeEEEEEECCCC---ceEEEEeCCCCCcceEEEEeCCCC----CEEEEEeCCCc
Q 015198          228 ----------------GLLLATASTRGTLIRIFNTVDG---TRLQEVRRGVDRAEIYSIALSPNV----QWLAVASDKGT  284 (411)
Q Consensus       228 ----------------g~~l~s~s~dg~~I~vwd~~~~---~~~~~~~~~~~~~~v~~l~~spdg----~~l~s~s~dg~  284 (411)
                                      +++|++|+.|+. |++||++.+   +.+..+.+  |...|.+++|+|++    ++|++++.|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred             CCccccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeeccc--CCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence                            478999999999 999999765   34556666  88899999999987    88999999999


Q ss_pred             EEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEE
Q 015198          285 VHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFI  364 (411)
Q Consensus       285 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (411)
                      |+||++++.....                                  .                  ....+.-..+.+..
T Consensus       240 v~iw~~~~~~~~~----------------------------------~------------------~~~~~~~~~~~v~~  267 (316)
T 3bg1_A          240 VFIWTCDDASSNT----------------------------------W------------------SPKLLHKFNDVVWH  267 (316)
T ss_dssp             EEEEECSSTTCCC----------------------------------C------------------BCCEEEECSSCEEE
T ss_pred             EEEEEccCccccc----------------------------------h------------------hhhhhhcCCCcEEE
Confidence            9999998743210                                  0                  00011222356778


Q ss_pred             EEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          365 AAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       365 ~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                      ++|+++ +.|++++.||.|++|....
T Consensus       268 v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          268 VSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            899998 6788889999999999876

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=9e-29  Score=236.47  Aligned_cols=275  Identities=13%  Similarity=0.183  Sum_probs=219.7

Q ss_pred             cccCCCCCCe-EEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           38 AFSDVDEIEL-ISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        38 ~~~~~h~~~V-~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      ....+|.+.| .+  +.+++++|++|+ ||.|++||+.+.+....  +..|...+.++.++++  .+++++.|     +.
T Consensus       112 ~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~--~l~s~~~d-----g~  180 (445)
T 2ovr_B          112 KVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRT--LVGHTGGVWSSQMRDN--IIISGSTD-----RT  180 (445)
T ss_dssp             EEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEE--CCCCSSCEEEEEEETT--EEEEEETT-----SC
T ss_pred             EEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEE--EcCCCCCEEEEEecCC--EEEEEeCC-----Ce
Confidence            4567898875 55  445689999999 99999999987664433  4578888888888754  56677776     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      |++||+.+++.+..+. |...|.++.++++....+ .|+.|++||+.+++.+..+..|...+..+.  ++  +..+++ |
T Consensus       181 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~--~~--~~~l~~-~  255 (445)
T 2ovr_B          181 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ--YD--GRRVVS-G  255 (445)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE--EC--SSCEEE-E
T ss_pred             EEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEE--EC--CCEEEE-E
Confidence            9999999999999888 899999999987764444 799999999999999999988887555444  43  345654 6


Q ss_pred             CCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198          194 LQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (411)
Q Consensus       194 ~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (411)
                      +.||.|++|+.. .+.+..+.+|...|.+++|  ++.+|++++.|+. |++||+++++.+..+..  |...+.++.+  +
T Consensus       256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~~v~~~~~--~  328 (445)
T 2ovr_B          256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTG--HQSLTSGMEL--K  328 (445)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECC--CCSCEEEEEE--E
T ss_pred             cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcC--CcccEEEEEE--e
Confidence            689999998865 4667788899999999999  8899999999999 99999999999999987  7778888887  4


Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccce
Q 015198          273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF  352 (411)
Q Consensus       273 g~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (411)
                      +++|++++.||.|++||+++++.......+                                                  
T Consensus       329 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------------------------------------------------  358 (445)
T 2ovr_B          329 DNILVSGNADSTVKIWDIKTGQCLQTLQGP--------------------------------------------------  358 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECST--------------------------------------------------
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEccC--------------------------------------------------
Confidence            679999999999999999887654211110                                                  


Q ss_pred             EEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          353 AQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                         ..+...+..++|.+ +.|++++.||.|++|++..
T Consensus       359 ---~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~  391 (445)
T 2ovr_B          359 ---NKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKT  391 (445)
T ss_dssp             ---TSCSSCEEEEEECS-SEEEEEETTSEEEEEETTT
T ss_pred             ---CCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCC
Confidence               00123455667753 7899999999999998875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=2.8e-29  Score=230.58  Aligned_cols=244  Identities=14%  Similarity=0.143  Sum_probs=194.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+|...|.+++|+|++++|++|+ |+.|++|+...........  .+...+....+.+++..+++++.|     +.++
T Consensus        81 ~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~s~d-----~~~~  153 (340)
T 4aow_A           81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLSVAFSSDNRQIVSGSRD-----KTIK  153 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECTTSSCEEEEETT-----SCEE
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec--CCCCceeEEEEeecCccceeecCC-----CeEE
Confidence            4578999999999999999999999 9999999998755544443  455566677788888888888887     9999


Q ss_pred             EEECCCCcEEEEEe--ecCceeEEEEcCCe--EEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          118 IWDDHQSRCIGEFA--FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       118 vwd~~~~~~~~~~~--~~~~i~~~~~~~~~--~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      +||+..........  |...+..++|++++  .+++   .|+.|++||+++++.+..+..|...+.  ++.+++++.+|+
T Consensus       154 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~--~~~~s~~~~~l~  231 (340)
T 4aow_A          154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN--TVTVSPDGSLCA  231 (340)
T ss_dssp             EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE--EEEECTTSSEEE
T ss_pred             EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEE--EEEECCCCCEEE
Confidence            99987665443332  78899999998764  3333   689999999999999999988887554  455556667777


Q ss_pred             EecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC-------CCCCcc
Q 015198          191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR-------GVDRAE  263 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-------~~~~~~  263 (411)
                      + |+.||.|++|+...........+...|.+++|+|++.++ +++.|+. |++||++++..+..+..       ..|...
T Consensus       232 s-~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~  308 (340)
T 4aow_A          232 S-GGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPS-IKIWDLEGKIIVDELKQEVISTSSKAEPPQ  308 (340)
T ss_dssp             E-EETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTE-EEEEETTTTEEEEEECCC-------CCCCC
T ss_pred             E-EeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCE-EEEEECCCCeEEEeccccceeeeccCCCCC
Confidence            5 668999999998765544444456789999999998755 5566899 99999998877766643       136779


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      |++++|+|||++|++|+.||.|+|||+++|.
T Consensus       309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          309 CTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            9999999999999999999999999999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.2e-29  Score=238.52  Aligned_cols=238  Identities=12%  Similarity=0.110  Sum_probs=190.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCcEEEEecCCCc---ceEEeecC-------------------------------------
Q 015198           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFK---ETFRRDLK-------------------------------------   84 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~---~~~~~~~~-------------------------------------   84 (411)
                      .+|.+++|+++|++|+++.++.|++||+.+++   .......+                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI   84 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence            57899999999998887779999999998766   22221100                                     


Q ss_pred             ---------------CCCEEEEEEeccCCeEEE-EecCCCCCCCCCeEEEEECC--CCcEEEEEe---ecCceeEEEEcC
Q 015198           85 ---------------SGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDH--QSRCIGEFA---FRSDVRSVKLSR  143 (411)
Q Consensus        85 ---------------~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~~i~vwd~~--~~~~~~~~~---~~~~i~~~~~~~  143 (411)
                                     .+...+.++.|++++..| ++++.|     +.|++||+.  +++.+..+.   +...|.+++|+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             ---------------CCCCCEEEEEECTTSSEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred             cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC-----CeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence                           112258899999998875 888777     999999998  888888874   578999999999


Q ss_pred             CeEEEE---EcCeEEEEEcCCceeeE----EEeccCCCcceEEEccCC-CceEEEEecCCCCeEEEEEcCC-cceEE-Ee
Q 015198          144 DRIVVV---LEHKIYVYSFVDLKLLH----QIETLANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFGL-NMIKL-IN  213 (411)
Q Consensus       144 ~~~~~~---~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~dg~i~i~~~~~-~~~~~-~~  213 (411)
                      ++.+++   .++.|++|++.+++...    .+..|...+..+++++++ .+.+|++ |+.|+.|++|+... ..+.. +.
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~  238 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT-SDRDEHIKISHYPQCFIVDKWLF  238 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE-EETTSCEEEEEESCTTCEEEECC
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE-EcCCCcEEEEECCCCceeeeeec
Confidence            998877   58999999998776544    666777755555555541 1566665 66899999998764 44555 45


Q ss_pred             ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC-----------------------CCCcceEEEEeC
Q 015198          214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG-----------------------VDRAEIYSIALS  270 (411)
Q Consensus       214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~-----------------------~~~~~v~~l~~s  270 (411)
                      +|...|.+++|+ ++++|++++.|+. |++||+.+++.+..+..+                       .....|.+++|+
T Consensus       239 ~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          239 GHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             CCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             CCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence            899999999999 9999999999999 999999999998888631                       123478999999


Q ss_pred             CCCCEEEEEe-CCCcEEEEEc
Q 015198          271 PNVQWLAVAS-DKGTVHIFSL  290 (411)
Q Consensus       271 pdg~~l~s~s-~dg~I~vwd~  290 (411)
                      |++++|++++ .|+.|+||++
T Consensus       317 ~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          317 KNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             SSSSEEEEEETTCSEEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEe
Confidence            9999999998 8999999999

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.7e-29  Score=258.13  Aligned_cols=202  Identities=10%  Similarity=0.043  Sum_probs=162.6

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ..+|.+.|++++|+|++++||+|+ ||.|+||+....+....  + .+...+..+.|++ +.++++++.|     +.|++
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--~-~~~~~V~~l~fsp-g~~L~S~s~D-----~~v~l   83 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--L-EDRSAIKEMRFVK-GIYLVVINAK-----DTVYV   83 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE--C-SSCCCEEEEEEET-TTEEEEEETT-----CEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--c-CCCCCEEEEEEcC-CCEEEEEECc-----CeEEE
Confidence            358999999999999999999999 99999999876443222  3 4667889999999 5588888887     99999


Q ss_pred             EECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeE-----------EEeccCCCcceEEEccCC
Q 015198          119 WDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLH-----------QIETLANLRGLCCLSHHS  184 (411)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  184 (411)
                      ||+.+++++..+.+...|.+++|+|++.+++   .||.|++||+++++...           .+..|...+..++++++.
T Consensus        84 Wd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~  163 (902)
T 2oaj_A           84 LSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD  163 (902)
T ss_dssp             EETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred             EECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC
Confidence            9999999999999889999999999999888   69999999999887631           123355555555554432


Q ss_pred             CceEEEEecCCCCeEEEEEcCCc-ceEEEecc------------------ccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          185 STSVLACPGLQRGQVRIEHFGLN-MIKLINAH------------------DSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~------------------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                       +..++ +|+.||.| +|+.... .+..+..|                  ...|.+++|+|+|++|++++.|+. |++||
T Consensus       164 -~~~l~-~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd  239 (902)
T 2oaj_A          164 -IGTVL-ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWD  239 (902)
T ss_dssp             -EEEEE-EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEE
T ss_pred             -CCEEE-EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEE
Confidence             23444 47799999 9997654 45555544                  477999999999999999999999 99999


Q ss_pred             CCCCceEEE
Q 015198          246 TVDGTRLQE  254 (411)
Q Consensus       246 ~~~~~~~~~  254 (411)
                      +++++++..
T Consensus       240 ~~~g~~~~~  248 (902)
T 2oaj_A          240 ANSGHMIMA  248 (902)
T ss_dssp             TTTCCEEEE
T ss_pred             CCCCcEEEE
Confidence            999987654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-29  Score=259.48  Aligned_cols=295  Identities=13%  Similarity=0.155  Sum_probs=207.3

Q ss_pred             cCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCCCcceEEeecC----------------CCCEEEEEEeccCCeEE
Q 015198           40 SDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKETFRRDLK----------------SGGFRIVEMLFRCNILA  101 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~  101 (411)
                      ..+|.+.|++++|+|+ +..|++|+ |+.| |||+.+.+.......+                .|...+.++.|+|++..
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~  225 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH  225 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence            4689999999999996 57888888 9999 9999875544333211                12356999999999999


Q ss_pred             EEecCCCCCCCCCeEEEEECCCCcEEEEEe------e-------------cCceeEEEEc----CCe-EEEE---Ec---
Q 015198          102 LVGAGDNSQYPPTKVIIWDDHQSRCIGEFA------F-------------RSDVRSVKLS----RDR-IVVV---LE---  151 (411)
Q Consensus       102 l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~------~-------------~~~i~~~~~~----~~~-~~~~---~d---  151 (411)
                      +++++.|     +.|++||+++++++....      |             ...|.+++|+    |++ .+++   .+   
T Consensus       226 lasgs~D-----g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~  300 (902)
T 2oaj_A          226 IITIHED-----NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG  300 (902)
T ss_dssp             EEEEETT-----CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred             EEEEECC-----CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence            9999998     999999999998876421      1             3468899994    553 3333   12   


Q ss_pred             --CeEEEEEc----------------------------------------------------------------------
Q 015198          152 --HKIYVYSF----------------------------------------------------------------------  159 (411)
Q Consensus       152 --g~i~iwd~----------------------------------------------------------------------  159 (411)
                        ..+.+|++                                                                      
T Consensus       301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~  380 (902)
T 2oaj_A          301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETML  380 (902)
T ss_dssp             SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEE
T ss_pred             CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEE
Confidence              25666652                                                                      


Q ss_pred             -CCceeeEE-------EeccCCCcceEE--------------------------------EccCCCceEEEEecCCCCeE
Q 015198          160 -VDLKLLHQ-------IETLANLRGLCC--------------------------------LSHHSSTSVLACPGLQRGQV  199 (411)
Q Consensus       160 -~~~~~~~~-------~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~g~~dg~i  199 (411)
                       .++.....       +..+...+..++                                +++++++.+|++ |+.|++|
T Consensus       381 ~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS-gs~DgtV  459 (902)
T 2oaj_A          381 YPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT-GHSNGSV  459 (902)
T ss_dssp             TTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE-EETTSEE
T ss_pred             CCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE-ecCCCcE
Confidence             21111000       000001111111                                233567777765 7799999


Q ss_pred             EEEEcCCcceE---EEe---------ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc-----------------
Q 015198          200 RIEHFGLNMIK---LIN---------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-----------------  250 (411)
Q Consensus       200 ~i~~~~~~~~~---~~~---------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-----------------  250 (411)
                      ++|+.....+.   .+.         +|...|.+++|+|+|++||+|+.||. |+|||+.+++                 
T Consensus       460 rlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt-V~lwd~~~~~~~~~~~~~~~~~~~~~~  538 (902)
T 2oaj_A          460 RIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD-VVLFKYEVNQFYSVENRPESGDLEMNF  538 (902)
T ss_dssp             EEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC-EEEEEEEECCC---------------C
T ss_pred             EEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE-EEEEEecCccccCccccCCCcccceee
Confidence            99998754321   121         78899999999999999999999999 9999997663                 


Q ss_pred             ----------------------------eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 015198          251 ----------------------------RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (411)
Q Consensus       251 ----------------------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~  302 (411)
                                                  ++..+.+  |.+.|++++|+||| +||+|+.|++|+|||++++.....    
T Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~----  611 (902)
T 2oaj_A          539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM----  611 (902)
T ss_dssp             CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE----
T ss_pred             eeccccCCccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE----
Confidence                                        3556666  88899999999999 999999999999999877653210    


Q ss_pred             CCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEE-eCCCceEEEEEc-----cC----CE
Q 015198          303 LSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFH-IPEVTHFIAAFG-----SQ----NT  372 (411)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~----~~  372 (411)
                                                          . .+.          .+. -+.+.+..++|+     ++    ..
T Consensus       612 ------------------------------------~-~~~----------~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~  644 (902)
T 2oaj_A          612 ------------------------------------E-NIR----------EISGAQSACVTCIEFVIMEYGDDGYSSIL  644 (902)
T ss_dssp             ------------------------------------E-EGG----------GTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred             ------------------------------------e-ehh----------HhccccccceEEEEEEEEecCCCCCcceE
Confidence                                                0 000          000 122356778888     77    47


Q ss_pred             EEEEEeCCcEEEEEEecCCCCcEE
Q 015198          373 VVIVSMDGSFYRCSFDPVHGGEML  396 (411)
Q Consensus       373 ~~~~~~dg~~~~~~~~~~~~~~~~  396 (411)
                      |++++.||.|++|++.+...|++.
T Consensus       645 l~sgs~D~tv~~wd~~p~~~g~~~  668 (902)
T 2oaj_A          645 MVCGTDMGEVITYKILPASGGKFD  668 (902)
T ss_dssp             EEEEETTSEEEEEEEEECGGGCEE
T ss_pred             EEEEecCCcEEEEEEecCCCCcEE
Confidence            888999999999999776566655

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=1e-28  Score=253.55  Aligned_cols=245  Identities=13%  Similarity=0.130  Sum_probs=208.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+|...|.+++|+|++++|++|+ ||.|+||++.+.+.....  ..|...+.++.|++++..+++++.|     +.|
T Consensus        49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i  121 (814)
T 3mkq_A           49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDD-----LTV  121 (814)
T ss_dssp             EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETT-----SEE
T ss_pred             EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE--ecCCCCEEEEEEeCCCCEEEEEcCC-----CEE
Confidence            34568999999999999999999999 999999999986655444  3678889999999999888898887     999


Q ss_pred             EEEECCCC-cEEEEEe-ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEeccC-CCcceEEEccCCCceEE
Q 015198          117 IIWDDHQS-RCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLA-NLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       117 ~vwd~~~~-~~~~~~~-~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l  189 (411)
                      ++||+.++ .....+. |...|.+++|+| ++..++   .|+.|++||+.+++....+..+. ..+..+++++.+++.++
T Consensus       122 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             EEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred             EEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence            99999887 5566666 889999999999 777776   68999999999888877776654 66677778776677787


Q ss_pred             EEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198          190 ACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (411)
                      ++ |+.||.|++|+.. ++.+..+.+|...|.+++|+|++++|++++.||. |++||+.+++.+..+..  +...+.+++
T Consensus       202 ~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--~~~~v~~~~  277 (814)
T 3mkq_A          202 IT-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNV--GLERSWCIA  277 (814)
T ss_dssp             EE-ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECC--SSSSEEEEE
T ss_pred             EE-EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeec--CCCcEEEEE
Confidence            76 6689999999865 4667788899999999999999999999999999 99999999999999887  677999999


Q ss_pred             eCCCCC--EEEEEeCCCcEEEEEccccc
Q 015198          269 LSPNVQ--WLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       269 ~spdg~--~l~s~s~dg~I~vwd~~~~~  294 (411)
                      |+|++.  +++++ .++.+.+|++..+.
T Consensus       278 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          278 THPTGRKNYIASG-FDNGFTVLSLGNDE  304 (814)
T ss_dssp             ECTTCGGGEEEEE-ETTEEEEEECSCCS
T ss_pred             EccCCCceEEEEE-eCCCEEEEEcCCCC
Confidence            999987  35555 46669999987654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=2.1e-28  Score=233.90  Aligned_cols=280  Identities=15%  Similarity=0.201  Sum_probs=219.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+|.+.|.+++|+  +++|++|+ ||.|++||+++.+....  +..|...+.++.++++.  +++++.|     +.|
T Consensus       153 ~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~--l~s~s~d-----g~i  221 (445)
T 2ovr_B          153 RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT--LYGHTSTVRCMHLHEKR--VVSGSRD-----ATL  221 (445)
T ss_dssp             EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTE--EEEEETT-----SEE
T ss_pred             EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE--ECCCCCcEEEEEecCCE--EEEEeCC-----CEE
Confidence            4567899999999998  56999999 99999999988654433  44777788888887654  6666666     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      ++||+.+++.+..+. |...|.++.++......+ .|+.|++||+++++.+..+..|...+.  ++.+  ++..+++ |+
T Consensus       222 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~--~~~~--~~~~l~~-~~  296 (445)
T 2ovr_B          222 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQF--DGIHVVS-GS  296 (445)
T ss_dssp             EEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE--EEEE--CSSEEEE-EE
T ss_pred             EEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceE--EEEE--CCCEEEE-Ee
Confidence            999999999999887 899999999944333333 799999999999999999988877554  4444  3456655 66


Q ss_pred             CCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC-CCcceEEEEeCCC
Q 015198          195 QRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-DRAEIYSIALSPN  272 (411)
Q Consensus       195 ~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-~~~~v~~l~~spd  272 (411)
                      .||.|++|+.. ++.+..+.+|...+.++.+  ++++|++++.||. |++||+++++.+..+.... |...|.+++|+  
T Consensus       297 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--  371 (445)
T 2ovr_B          297 LDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--  371 (445)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--
T ss_pred             CCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCCCCCEEEEEEC--
Confidence            89999999875 5677788899999988877  5679999999999 9999999999998887532 66789999995  


Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccce
Q 015198          273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF  352 (411)
Q Consensus       273 g~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (411)
                      +++|++++.||.|++||+.+++........                                            .     
T Consensus       372 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--------------------------------------------~-----  402 (445)
T 2ovr_B          372 KNFVITSSDDGTVKLWDLKTGEFIRNLVTL--------------------------------------------E-----  402 (445)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEEEC--------------------------------------------T-----
T ss_pred             CCEEEEEeCCCeEEEEECCCCceeeeeecc--------------------------------------------c-----
Confidence            589999999999999999988754211000                                            0     


Q ss_pred             EEEEeCCCceEEEEEccCC-EEEEEEeCCc----EEEEEEec
Q 015198          353 AQFHIPEVTHFIAAFGSQN-TVVIVSMDGS----FYRCSFDP  389 (411)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~----~~~~~~~~  389 (411)
                        .....+.+..++|++++ .+++++.||.    +++|+++.
T Consensus       403 --~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          403 --SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             --TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             --cCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence              00122456778999984 4566677897    99999886

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=7.7e-29  Score=265.70  Aligned_cols=282  Identities=13%  Similarity=0.129  Sum_probs=224.8

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC--CeEEEEecCCCCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPT  114 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~d~  114 (411)
                      ....+|.+.|.+++|+|++++|++|+ |+.|+|||+.+.+.....  ..|...+.++.|++  +..++++++.|     +
T Consensus       651 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~sg~~d-----~  723 (1249)
T 3sfz_A          651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY--DEHSEQVNCCHFTNKSNHLLLATGSND-----F  723 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECSSSSCCEEEEEETT-----S
T ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE--cCCCCcEEEEEEecCCCceEEEEEeCC-----C
Confidence            34568999999999999999999999 999999999986655444  36777888888887  66788888888     9


Q ss_pred             eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEe---------------------
Q 015198          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE---------------------  169 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~---------------------  169 (411)
                      .|++||+.+++++..+. |...|.+++|+|++.+++   .||.|++||+.+++....+.                     
T Consensus       724 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  803 (1249)
T 3sfz_A          724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC  803 (1249)
T ss_dssp             CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred             eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence            99999999999998887 899999999999998777   68999999998776555442                     


Q ss_pred             ----------------------------------ccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEec
Q 015198          170 ----------------------------------TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA  214 (411)
Q Consensus       170 ----------------------------------~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~  214 (411)
                                                        .|..  .+.++.+++++.++++ ++.+|.|++|+... ..+..+.+
T Consensus       804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~-~~~dg~v~vwd~~~~~~~~~~~~  880 (1249)
T 3sfz_A          804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS--TIQYCDFSPYDHLAVI-ALSQYCVELWNIDSRLKVADCRG  880 (1249)
T ss_dssp             CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS--CCCEEEECSSTTEEEE-ECSSSCEEEEETTTTEEEEEECC
T ss_pred             EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC--ceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCCceeeecCC
Confidence                                              2222  2334445556667765 66899999998764 55667788


Q ss_pred             cccceeEEEecCCCCEEEEEcCCCeEEEEEECC-----------------------------------------------
Q 015198          215 HDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-----------------------------------------------  247 (411)
Q Consensus       215 ~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-----------------------------------------------  247 (411)
                      |...|.+++|+|+|++|++++.|+. |++||+.                                               
T Consensus       881 h~~~v~~v~~spdg~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  959 (1249)
T 3sfz_A          881 HLSWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYL  959 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEE
T ss_pred             CccceEEEEECCCCCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEc
Confidence            9999999999999999999888888 8888743                                               


Q ss_pred             --------------------------------CCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          248 --------------------------------DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       248 --------------------------------~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                                                      +++.+..+..  |...|.+++|+|+|++|++++.||.|++||+.+++.
T Consensus       960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A          960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG--HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC--CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred             ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence                                            2233333333  777899999999999999999999999999998764


Q ss_pred             CCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEE
Q 015198          296 GEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVI  375 (411)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (411)
                      ...                                                         ......+..++|++++.+++
T Consensus      1038 ~~~---------------------------------------------------------~~~~~~v~~~~~~~~~~l~~ 1060 (1249)
T 3sfz_A         1038 VFL---------------------------------------------------------QAHQETVKDFRLLQDSRLLS 1060 (1249)
T ss_dssp             ECC---------------------------------------------------------BCCSSCEEEEEECSSSEEEE
T ss_pred             EEE---------------------------------------------------------ecCCCcEEEEEEcCCCcEEE
Confidence            320                                                         01113456678999999999


Q ss_pred             EEeCCcEEEEEEec
Q 015198          376 VSMDGSFYRCSFDP  389 (411)
Q Consensus       376 ~~~dg~~~~~~~~~  389 (411)
                      ++.||.+++|++..
T Consensus      1061 ~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A         1061 WSFDGTVKVWNVIT 1074 (1249)
T ss_dssp             EESSSEEEEEETTT
T ss_pred             EECCCcEEEEECCC
Confidence            99999999998865

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=2e-29  Score=254.36  Aligned_cols=242  Identities=14%  Similarity=0.154  Sum_probs=193.3

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+|...|.+++|+|++++|++|+ |+.|+|||+.+......  +..|...+.++.|++++..+++++.|     ++|+
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D-----~~i~  497 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDNRQIVSASRD-----RTIK  497 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSSCEEEEETT-----SCEE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCCCEEEEEeCC-----CEEE
Confidence            4678999999999999999999999 99999999987554433  44788889999999999999999988     9999


Q ss_pred             EEECCCCcEEEEE----eecCceeEEEEcCCe--EEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198          118 IWDDHQSRCIGEF----AFRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       118 vwd~~~~~~~~~~----~~~~~i~~~~~~~~~--~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                      +||+.........    .|...|.+++|+|++  ..++   .|+.|++||+++++....+..|...+.  ++.+++++.+
T Consensus       498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~--~v~~spdg~~  575 (694)
T 3dm0_A          498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS--TVAVSPDGSL  575 (694)
T ss_dssp             EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEEECTTSSE
T ss_pred             EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE--EEEEeCCCCE
Confidence            9997554333322    167789999999986  3344   699999999999999999988887544  5555566677


Q ss_pred             EEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC---------
Q 015198          189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV---------  259 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~---------  259 (411)
                      |++ |+.||.|++|+...........+...|.+++|+|++.+|++++ ++. |+|||+++++.+..+....         
T Consensus       576 l~s-g~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~  652 (694)
T 3dm0_A          576 CAS-GGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHG-IKIWDLESKSIVEDLKVDLKAEAEKADN  652 (694)
T ss_dssp             EEE-EETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTE-EEEEETTTTEEEEEECCCCC--------
T ss_pred             EEE-EeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCC-EEEEECCCCCChhhhccccccccccccc
Confidence            775 6689999999986543332234567899999999998887765 667 9999999998887775321         


Q ss_pred             --------CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          260 --------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       260 --------~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                              +...+++++|+|||++|++|+.||.|+||++..
T Consensus       653 ~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             --------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence                    111378999999999999999999999999863

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=2.3e-29  Score=235.63  Aligned_cols=238  Identities=11%  Similarity=0.060  Sum_probs=188.4

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           41 DVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        41 ~~h~~~V~~l~~s~-~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      .+|...|.+++|+| ++++|++++ |+.|++||+.............+...+.++.|++++..+++++.|     +.|++
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i  189 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST-----GRLLL  189 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT-----SEEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCC-----CCEEE
Confidence            47999999999999 689999999 999999999863222222122344678899999999999999988     99999


Q ss_pred             EECCCCcEEEEEe-ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCC----ceeeEEEeccCCCcceEEEccCC-CceE
Q 015198          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVD----LKLLHQIETLANLRGLCCLSHHS-STSV  188 (411)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~  188 (411)
                      ||+ +++.+..+. |...|.+++|+|++. +++   .|+.|++||+++    ++.+..+ .|..  .+.++.+++ ++.+
T Consensus       190 ~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~--~v~~~~~s~~~~~~  265 (383)
T 3ei3_B          190 LGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK--PVNAAYFNPTDSTK  265 (383)
T ss_dssp             EET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS--CEEEEEECTTTSCE
T ss_pred             EEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC--ceEEEEEcCCCCCE
Confidence            998 677787777 899999999999987 555   699999999987    5666666 4555  455566666 6677


Q ss_pred             EEEecCCCCeEEEEEcCC-cceEEEeccc-----------------cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc
Q 015198          189 LACPGLQRGQVRIEHFGL-NMIKLINAHD-----------------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT  250 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~-~~~~~~~~~~-----------------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~  250 (411)
                      |++ ++.|+.|++|+... .....+..|.                 ..+..++|+|++++  +++.|+. |++||+.+++
T Consensus       266 l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~~~  341 (383)
T 3ei3_B          266 LLT-TDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANSGG  341 (383)
T ss_dssp             EEE-EESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTTCC
T ss_pred             EEE-EcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCCCc
Confidence            775 56899999998764 3445555442                 33444667777766  7789999 9999999999


Q ss_pred             eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      .+..+..+.+...+..++|+|++++|++++ ||.|+|||+++
T Consensus       342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          342 LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            999998765567788889999999999997 99999999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-28  Score=228.64  Aligned_cols=250  Identities=9%  Similarity=0.087  Sum_probs=204.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+|...|.+++|+|++++|++++ |+.|++||+.+.+......   +...+..+.|++++..++++..+....++.|
T Consensus        68 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i  144 (369)
T 3zwl_B           68 GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSI  144 (369)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEE
T ss_pred             hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEE
Confidence            44668999999999999999999999 9999999999866554443   5667888999999888877665322334899


Q ss_pred             EEEECCCCcE-----------EEEEe-ecC--ceeEEEEcCCeEEEE---EcCeEEEEEcCC-ceeeEEEeccCCCcceE
Q 015198          117 IIWDDHQSRC-----------IGEFA-FRS--DVRSVKLSRDRIVVV---LEHKIYVYSFVD-LKLLHQIETLANLRGLC  178 (411)
Q Consensus       117 ~vwd~~~~~~-----------~~~~~-~~~--~i~~~~~~~~~~~~~---~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~  178 (411)
                      ++||+..+..           +..+. +..  .+.+++|+|++.+++   .|+.|++||+++ ++.+..+..+...+  .
T Consensus       145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v--~  222 (369)
T 3zwl_B          145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI--S  222 (369)
T ss_dssp             EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE--E
T ss_pred             EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce--e
Confidence            9999766532           22222 334  899999999998877   689999999998 78888888887754  4


Q ss_pred             EEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCC--------------eEEEEE
Q 015198          179 CLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG--------------TLIRIF  244 (411)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg--------------~~I~vw  244 (411)
                      ++.+++++.+|++ ++.|+.|++|+...........+...+..++|+|+++++++++.++              . +++|
T Consensus       223 ~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~  300 (369)
T 3zwl_B          223 DMQFSPDLTYFIT-SSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE-ARFY  300 (369)
T ss_dssp             EEEECTTSSEEEE-EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CE-EEEE
T ss_pred             EEEECCCCCEEEE-ecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce-eEEE
Confidence            5555566677776 5689999999987654444444889999999999999999999888              7 9999


Q ss_pred             ECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          245 NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      |+.+++.+..+..  |...|.+++|+|++++|++++.||.|+||+++++...
T Consensus       301 d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  350 (369)
T 3zwl_B          301 HKIFEEEIGRVQG--HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD  350 (369)
T ss_dssp             ETTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred             ecCCCcchhheec--ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence            9999999999988  8889999999999999999999999999999987644

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=1.2e-29  Score=235.94  Aligned_cols=248  Identities=10%  Similarity=0.047  Sum_probs=201.5

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+|...|.+++|+|++++|++++ |+.|++|++++.+......+..+...+.++.|++++..+++++.+     +.|
T Consensus        46 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v  120 (372)
T 1k8k_C           46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-----RVI  120 (372)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT-----SSE
T ss_pred             eeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CEE
Confidence            34568999999999999999999999 999999999876544444445778889999999999999998887     999


Q ss_pred             EEEECCCCcE---EEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEc------------------CCceeeEEEec
Q 015198          117 IIWDDHQSRC---IGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSF------------------VDLKLLHQIET  170 (411)
Q Consensus       117 ~vwd~~~~~~---~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~------------------~~~~~~~~~~~  170 (411)
                      ++||+..++.   ...+.  |...|.+++|+|++.+++   .|+.|++||+                  ..++.+..+..
T Consensus       121 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
T 1k8k_C          121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS  200 (372)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred             EEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC
Confidence            9999888763   33332  688999999999998777   6899999995                  36777878877


Q ss_pred             cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC-
Q 015198          171 LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD-  248 (411)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~-  248 (411)
                      |...+  .++.+++++.+|++ ++.|+.|++|+.. ++.+..+..|...|.+++|+|++++|+++ .|+. |++||+.+ 
T Consensus       201 ~~~~v--~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~~  275 (372)
T 1k8k_C          201 SCGWV--HGVCFSANGSRVAW-VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDSA  275 (372)
T ss_dssp             CSSCE--EEEEECSSSSEEEE-EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEETT
T ss_pred             CCCeE--EEEEECCCCCEEEE-EeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccCc
Confidence            76644  45555566667776 5689999999874 57788889999999999999999988888 8999 99999987 


Q ss_pred             -CceE--------------------------------------EEEeCCCCCcceEEEEeC-CCC---CEEEEEeCCCcE
Q 015198          249 -GTRL--------------------------------------QEVRRGVDRAEIYSIALS-PNV---QWLAVASDKGTV  285 (411)
Q Consensus       249 -~~~~--------------------------------------~~~~~~~~~~~v~~l~~s-pdg---~~l~s~s~dg~I  285 (411)
                       ++..                                      ..+. ..|...|++++|. ++|   .+|++++.||.|
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i  354 (372)
T 1k8k_C          276 AGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM  354 (372)
T ss_dssp             TTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred             CceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCce
Confidence             4210                                      1222 1278899999966 677   999999999999


Q ss_pred             EEEEccccccC
Q 015198          286 HIFSLRVRVVG  296 (411)
Q Consensus       286 ~vwd~~~~~~~  296 (411)
                      ++||+++++..
T Consensus       355 ~~W~~~~~~~~  365 (372)
T 1k8k_C          355 SIWDVRSLESA  365 (372)
T ss_dssp             EEEEHHHHHHH
T ss_pred             EEEEecChhHh
Confidence            99999998754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.8e-30  Score=261.54  Aligned_cols=251  Identities=13%  Similarity=0.106  Sum_probs=199.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC--eEEEEecCCCCCCCCCe
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQYPPTK  115 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~~~d~~  115 (411)
                      ...+|.+.|++++|+|++++|++|+ ||.|+||++..........+..|...+.++.|+++  +..+++++.|     |.
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~   78 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GK   78 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-----SC
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-----Ce
Confidence            4678999999999999999999999 99999999985444444556678888999999877  8889998888     99


Q ss_pred             EEEEECCCCc--EEEEEe-ecCceeEEEEcCC--eEEEE---EcCeEEEEEcCCce--eeEEEeccCCCcceEEEccCC-
Q 015198          116 VIIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLK--LLHQIETLANLRGLCCLSHHS-  184 (411)
Q Consensus       116 i~vwd~~~~~--~~~~~~-~~~~i~~~~~~~~--~~~~~---~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~-  184 (411)
                      |++||+.+++  .+..+. |...|.+++|+|+  +..++   .||.|++||++++.  ....+..|...+..+.+.+.. 
T Consensus        79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence            9999999886  555555 8999999999998  76666   68999999998763  334555666644444444421 


Q ss_pred             ----------CceEEEEecCCCCeEEEEEcCC-----cceEEEeccccceeEEEecCC---CCEEEEEcCCCeEEEEEEC
Q 015198          185 ----------STSVLACPGLQRGQVRIEHFGL-----NMIKLINAHDSHIACFTLTLD---GLLLATASTRGTLIRIFNT  246 (411)
Q Consensus       185 ----------~~~~l~~~g~~dg~i~i~~~~~-----~~~~~~~~~~~~i~~l~~sp~---g~~l~s~s~dg~~I~vwd~  246 (411)
                                ++..+++ |+.||.|++|+...     .....+.+|...|.+++|+|+   +++|++++.||. |++||+
T Consensus       159 ~~~~~~~~~~d~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~  236 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQ  236 (753)
T ss_dssp             --------CGGGCCEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEEE
T ss_pred             ccccccccCCCCCEEEE-EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEecC
Confidence                      4566665 66899999998764     345667889999999999999   899999999999 999999


Q ss_pred             CCCceE---EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          247 VDGTRL---QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       247 ~~~~~~---~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      .+++..   .......|...|++++|+|+|++|++++.||.|++|+++.+.+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~  289 (753)
T 3jro_A          237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  289 (753)
T ss_dssp             SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCC
T ss_pred             CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCc
Confidence            887421   11122236778999999999999999999999999999976543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=4e-29  Score=231.06  Aligned_cols=240  Identities=18%  Similarity=0.210  Sum_probs=190.1

Q ss_pred             CCCCCCeEEEEEcCC---CCEEEEEe-CCcEEEEecCCCc-ceEEeecCCCCEEEEEE------eccCCeEEEEecCCCC
Q 015198           41 DVDEIELISVSWNQD---YGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEM------LFRCNILALVGAGDNS  109 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~---g~~la~g~-dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~l~s~~~d~  109 (411)
                      .+|...|.+++|+|+   +++|++|+ |+.|++|++.+.+ ....  +..|...+.++      .|++++..+++++.| 
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d-  138 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS--VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD-  138 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE--ECCCSSCEEEEEEESGGGCC-CCCEEEEEETT-
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE--EEecccceEEEeeccccccCCCccEEEEEeCC-
Confidence            378999999999999   69999999 9999999999765 3333  33666677777      467888889999888 


Q ss_pred             CCCCCeEEEEECCCCc-EEEEEe-ec----CceeEEE----EcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcc
Q 015198          110 QYPPTKVIIWDDHQSR-CIGEFA-FR----SDVRSVK----LSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRG  176 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~-~~~~~~-~~----~~i~~~~----~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~  176 (411)
                          +.|++||+.+++ .+..+. +.    ..+.++.    |++++.+++   .|+.|++||+++++.... ..+...  
T Consensus       139 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~--  211 (357)
T 3i2n_A          139 ----GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNG--  211 (357)
T ss_dssp             ----SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSC--
T ss_pred             ----CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCc--
Confidence                999999999887 677765 33    3888888    678888887   589999999999887544 445554  


Q ss_pred             eEEEccCC---CceEEEEecCCCCeEEEEEcCC-cceEE-----EeccccceeEEEecCCCC-EEEEEcCCCeEEEEEEC
Q 015198          177 LCCLSHHS---STSVLACPGLQRGQVRIEHFGL-NMIKL-----INAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNT  246 (411)
Q Consensus       177 ~~~~~~~~---~~~~l~~~g~~dg~i~i~~~~~-~~~~~-----~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~  246 (411)
                      +.++.+++   ++.++++ |+.||.|++|+... +....     +.+|...|.+++|+|+++ +|++++.||. |++||+
T Consensus       212 v~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~  289 (357)
T 3i2n_A          212 VCSLEFDRKDISMNKLVA-TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKY  289 (357)
T ss_dssp             EEEEEESCSSSSCCEEEE-EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEE
T ss_pred             eEEEEcCCCCCCCCEEEE-ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeec
Confidence            44555555   5667765 56899999988654 33333     348999999999999998 8999999999 999999


Q ss_pred             CCC-------------------ceEEEEeCCCCCcceEEEEeCCCCCEEE-EEeCCCcEEEEEccccc
Q 015198          247 VDG-------------------TRLQEVRRGVDRAEIYSIALSPNVQWLA-VASDKGTVHIFSLRVRV  294 (411)
Q Consensus       247 ~~~-------------------~~~~~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg~I~vwd~~~~~  294 (411)
                      +++                   +.+..+..  |...|.+++|+|++++|+ +++.||.|+|||+.+.+
T Consensus       290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTL--STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             ECCSCC--CCTTSCCCCCCCEEEEEEEEEC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CCCcccccccCCCCccccccccceeecccc--CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            754                   35666776  788999999999999998 89999999999998765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2.7e-29  Score=239.05  Aligned_cols=246  Identities=15%  Similarity=0.198  Sum_probs=198.2

Q ss_pred             ccCCCCCCeEEEEEcCC-CCEEEEEe-CCcEEEEecCC----------CcceEEeecCCCCEEEEEEeccCCeE-EEEec
Q 015198           39 FSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEP----------FKETFRRDLKSGGFRIVEMLFRCNIL-ALVGA  105 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~-g~~la~g~-dg~i~iw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~  105 (411)
                      ....|.+.|++++|+|+ +.+|++++ +|.|+||++.+          ......  +..|...+.++.|++++. .++++
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR--LRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEE--EECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEE--ecCCCCCeEEEEeCCCCCCeEEEE
Confidence            45679999999999998 67899999 99999999976          233333  346777888999999877 88888


Q ss_pred             CCCCCCCCCeEEEEECCCCcE-------EEEEe-ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCc---eeeEEEec
Q 015198          106 GDNSQYPPTKVIIWDDHQSRC-------IGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDL---KLLHQIET  170 (411)
Q Consensus       106 ~~d~~~~d~~i~vwd~~~~~~-------~~~~~-~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~---~~~~~~~~  170 (411)
                      +.|     |.|++||+.++..       ...+. |...|.+++|+| ++.+++   .|+.|++||++++   +.+..+..
T Consensus       201 ~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          201 SDD-----HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             CTT-----SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eCC-----CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            887     9999999987422       23343 888999999999 555554   6999999999877   56777777


Q ss_pred             cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCCC-EEEEEcCCCeEEEEEECC
Q 015198          171 LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTV  247 (411)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~  247 (411)
                      |...+.  ++.+++++..++++|+.||.|++|+...  ..+..+..|...|.+++|+|+++ +|++++.|+. |+|||+.
T Consensus       276 ~~~~v~--~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~  352 (430)
T 2xyi_A          276 HTAEVN--CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLS  352 (430)
T ss_dssp             CSSCEE--EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGG
T ss_pred             CCCCeE--EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCC
Confidence            776544  5555555554444577899999999875  56788899999999999999995 7999999999 9999997


Q ss_pred             C--------------CceEEEEeCCCCCcceEEEEeCCCCC-EEEEEeCCCcEEEEEccccccC
Q 015198          248 D--------------GTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       248 ~--------------~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      .              .+.+..+.+  |...|.+++|+|+++ +|++++.||.|+||++..+...
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~  414 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN  414 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred             CCccccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence            7              255555555  788999999999999 8999999999999999987654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=245.10  Aligned_cols=243  Identities=12%  Similarity=0.058  Sum_probs=185.6

Q ss_pred             cCCCCCCeEEEEEcCC------CCEEEEEe-CCcEEEEecCCCcce---------EEeecCCCCEEEEEEeccCCeEEEE
Q 015198           40 SDVDEIELISVSWNQD------YGCFAAGT-SCGFRIYNCEPFKET---------FRRDLKSGGFRIVEMLFRCNILALV  103 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~------g~~la~g~-dg~i~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~  103 (411)
                      ..+|.+.|++++|+|+      +.+||+++ ||+|+|||+......         ....+..|...+.++.|+++. .|+
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~la  281 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVV  281 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEE
Confidence            3567889999999997      57999999 999999999764321         011344677788999998876 578


Q ss_pred             ecCCCCCCCCCeEEEEECCCCc-EEEEEe-ecCceeEE--EEcCCe-EEEE---EcCeEEEEEcCCceeeEEEeccCCCc
Q 015198          104 GAGDNSQYPPTKVIIWDDHQSR-CIGEFA-FRSDVRSV--KLSRDR-IVVV---LEHKIYVYSFVDLKLLHQIETLANLR  175 (411)
Q Consensus       104 s~~~d~~~~d~~i~vwd~~~~~-~~~~~~-~~~~i~~~--~~~~~~-~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~  175 (411)
                      +|+.|     |+|++||+.+++ ....+. |...|.++  .|++++ .+++   .|++|++||+++++.+..+..+....
T Consensus       282 sgs~D-----gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~  356 (524)
T 2j04_B          282 CGFKN-----GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS  356 (524)
T ss_dssp             EEETT-----SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCC
T ss_pred             EEeCC-----CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccC
Confidence            88877     999999998764 444555 89999999  578887 6666   69999999999988877776665322


Q ss_pred             ceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-----
Q 015198          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-----  249 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-----  249 (411)
                      .+.+++++|++..+++ ++.|++|++|+... ..+..+.+|...|++++|+|+|++|++|+.|+. |++||+..+     
T Consensus       357 ~v~~v~fsp~~~~l~s-~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~  434 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIY-SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGI  434 (524)
T ss_dssp             SCCCEEEETTTTEEEE-ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC
T ss_pred             cccceEeCCCcCeEEE-eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhcccc
Confidence            2333444555566665 56899999998654 556778899999999999999999999999999 999985321     


Q ss_pred             ---------------------------------------ceEEEEeCCCCCcceEEEEeCCCCC---EEEEEeCCCcEEE
Q 015198          250 ---------------------------------------TRLQEVRRGVDRAEIYSIALSPNVQ---WLAVASDKGTVHI  287 (411)
Q Consensus       250 ---------------------------------------~~~~~~~~~~~~~~v~~l~~spdg~---~l~s~s~dg~I~v  287 (411)
                                                             ..+..+.+  |...|.+++|+|++.   +||+|+.||.|+|
T Consensus       435 ~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~g--h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl  512 (524)
T 2j04_B          435 KNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDA--HGINITCTKWNETSAGGKCYAFSNSAGLLTL  512 (524)
T ss_dssp             ------CCCCEEEECBCCSSSCEEEECCCCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred             ccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecC--CCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence                                                   01111222  667899999999964   9999999999999


Q ss_pred             EEccc
Q 015198          288 FSLRV  292 (411)
Q Consensus       288 wd~~~  292 (411)
                      |+++-
T Consensus       513 w~l~~  517 (524)
T 2j04_B          513 EYLSL  517 (524)
T ss_dssp             EECSC
T ss_pred             EEccc
Confidence            99874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=6.4e-29  Score=234.33  Aligned_cols=248  Identities=13%  Similarity=0.150  Sum_probs=200.4

Q ss_pred             cccCCCCCCeEEEEEcC-CCCEEEEEe-CCcEEEEecCCCcc-----eEEeecCCCCEEEEEEeccCCe-EEEEecCCCC
Q 015198           38 AFSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNS  109 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~-~g~~la~g~-dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~  109 (411)
                      ....+|.+.|++++|+| ++++|++|+ ||.|+||++.+...     .....+..|...+.++.|++++ .++++++.| 
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-  153 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-  153 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-
Confidence            34678999999999999 899999999 99999999987531     1122244788889999999998 688888887 


Q ss_pred             CCCCCeEEEEECCCCcEEEEE--e-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEE-eccCCCcceEEEcc
Q 015198          110 QYPPTKVIIWDDHQSRCIGEF--A-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSH  182 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~  182 (411)
                          +.|++||+.+++.+..+  . |...|.+++|+|++.+++   .|+.|++||+++++.+..+ ..|... .+..+.+
T Consensus       154 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~  228 (402)
T 2aq5_A          154 ----NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT-RPVHAVF  228 (402)
T ss_dssp             ----SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS-SCCEEEE
T ss_pred             ----CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC-cceEEEE
Confidence                99999999999999998  4 899999999999998777   6999999999999999888 566543 2344555


Q ss_pred             CCCceEEEEec---CCCCeEEEEEcCCcc--eEEEe-ccccceeEEEecCCCCEEE-EEcCCCeEEEEEECCCCce-EEE
Q 015198          183 HSSTSVLACPG---LQRGQVRIEHFGLNM--IKLIN-AHDSHIACFTLTLDGLLLA-TASTRGTLIRIFNTVDGTR-LQE  254 (411)
Q Consensus       183 ~~~~~~l~~~g---~~dg~i~i~~~~~~~--~~~~~-~~~~~i~~l~~sp~g~~l~-s~s~dg~~I~vwd~~~~~~-~~~  254 (411)
                      ++++.+|++ |   +.|+.|++|+.....  +.... .|...+.+++|+|++++|+ +++.|+. |++||+.+++. +..
T Consensus       229 ~~~~~~l~~-g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~~~~  306 (402)
T 2aq5_A          229 VSEGKILTT-GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPFLHY  306 (402)
T ss_dssp             CSTTEEEEE-EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTCEEE
T ss_pred             cCCCcEEEE-eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcceEe
Confidence            566777765 5   689999999987532  33333 5778899999999999886 5567999 99999998884 555


Q ss_pred             EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      +....+...|.+++|+|++.++++  .++.+++|++.+++.
T Consensus       307 l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          307 LSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             ecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            555336689999999999998764  566899999998653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-28  Score=233.39  Aligned_cols=240  Identities=14%  Similarity=0.115  Sum_probs=190.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecC---CCcceE--------EeecCC--CCEEEEEEe--ccCCeEEEEec
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCE---PFKETF--------RRDLKS--GGFRIVEML--FRCNILALVGA  105 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~---~~~~~~--------~~~~~~--~~~~~~~~~--~~~~~~~l~s~  105 (411)
                      +|...|.+++|+|++++|++|+ |+.|++||++   ..+...        ...+..  +...+.++.  +++++..++++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            6999999999999999999999 9999999995   222111        111111  333344444  56788899999


Q ss_pred             CCCCCCCCCeEEEEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEe-ccCCCcceE
Q 015198          106 GDNSQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE-TLANLRGLC  178 (411)
Q Consensus       106 ~~d~~~~d~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~  178 (411)
                      +.|     +.|++||+.+++.+..+.   |...|.+++|+|++.+++   .|+.|++||+++++.+..+. .+...+..+
T Consensus       189 ~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  263 (437)
T 3gre_A          189 TNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHV  263 (437)
T ss_dssp             ETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEE
T ss_pred             eCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEE
Confidence            888     999999999999999887   689999999999998887   69999999999999998886 455444444


Q ss_pred             EE--ccCCCceEEEEecCCCCeEEEEEcC-CcceEEEec--------------------------cccceeEEEecCCCC
Q 015198          179 CL--SHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINA--------------------------HDSHIACFTLTLDGL  229 (411)
Q Consensus       179 ~~--~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~--------------------------~~~~i~~l~~sp~g~  229 (411)
                      ++  .+++++.+|++ |+.||.|++|+.. ++.+..+.+                          |...|.+++|+ +++
T Consensus       264 ~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          264 EVCQFYGKNSVIVVG-GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             EECTTTCTTEEEEEE-ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             EeccccCCCccEEEE-EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence            44  44567777765 6789999999986 444555543                          56678889999 778


Q ss_pred             EEEEEcCCCeEEEEEECCCCceEEEEeCCC-----------------------------------CCcceEEEEeCCC--
Q 015198          230 LLATASTRGTLIRIFNTVDGTRLQEVRRGV-----------------------------------DRAEIYSIALSPN--  272 (411)
Q Consensus       230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~l~~spd--  272 (411)
                      +|++++.|+. |++||+.+++.+..+..+.                                   |...|++++|+++  
T Consensus       342 ~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~  420 (437)
T 3gre_A          342 ILLTDEATSS-IVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE  420 (437)
T ss_dssp             EEEEEGGGTE-EEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred             EEEecCCCCe-EEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence            9999999999 9999999998877776531                                   6789999999988  


Q ss_pred             CCEEEEEeCCCcEEEEE
Q 015198          273 VQWLAVASDKGTVHIFS  289 (411)
Q Consensus       273 g~~l~s~s~dg~I~vwd  289 (411)
                      +.+|++|+.||.|+||+
T Consensus       421 ~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          421 TPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SEEEEEEETTSCEEEEC
T ss_pred             ceEEEEEcCCceEEEeC
Confidence            77999999999999995

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.3e-28  Score=225.23  Aligned_cols=247  Identities=12%  Similarity=0.117  Sum_probs=194.0

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC--CCcEEEEEe-ecCceeEEEEcCC--eEEEE---EcCeE
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKI  154 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~--~~~~~~~~~-~~~~i~~~~~~~~--~~~~~---~dg~i  154 (411)
                      +.+|...+.++.|++++.++++++.|     +.|++||+.  +++.+..+. |...|.+++|+++  +.+++   .|+.|
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECC-----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            34788889999999999999999887     999999987  556666676 8999999999876  66666   68999


Q ss_pred             EEEEcCCce--eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc---ceEEEeccccceeEEEecC---
Q 015198          155 YVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTL---  226 (411)
Q Consensus       155 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~l~~sp---  226 (411)
                      ++||+.+++  .+..+..|...+..++++++..+.++++ ++.|+.|++|+....   ....+..|...|.+++|+|   
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEE-ecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            999999887  6666666766555444444422667765 568999999998754   4556778999999999999   


Q ss_pred             ----------CCCEEEEEcCCCeEEEEEECCCCc----eEEEEeCCCCCcceEEEEeCCC---CCEEEEEeCCCcEEEEE
Q 015198          227 ----------DGLLLATASTRGTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPN---VQWLAVASDKGTVHIFS  289 (411)
Q Consensus       227 ----------~g~~l~s~s~dg~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spd---g~~l~s~s~dg~I~vwd  289 (411)
                                ++.+|++++.|+. |++||+++++    .+..+..  |...|.+++|+|+   +++|++++.||.|++||
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             ---------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             cccccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence                      6999999999999 9999998765    3345555  7889999999999   89999999999999999


Q ss_pred             ccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEcc
Q 015198          290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS  369 (411)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (411)
                      +++++......                                    ..               ........+..++|++
T Consensus       238 ~~~~~~~~~~~------------------------------------~~---------------~~~~~~~~v~~~~~s~  266 (379)
T 3jrp_A          238 QDNEQGPWKKT------------------------------------LL---------------KEEKFPDVLWRASWSL  266 (379)
T ss_dssp             ESSTTSCCEEE------------------------------------ES---------------SSSCCSSCEEEEEECS
T ss_pred             CCCCCccceee------------------------------------ee---------------ccccCCCcEEEEEEcC
Confidence            99875321000                                    00               0000123566789999


Q ss_pred             C-CEEEEEEeCCcEEEEEEec
Q 015198          370 Q-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       370 ~-~~~~~~~~dg~~~~~~~~~  389 (411)
                      + ..|++++.||.+++|++..
T Consensus       267 ~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          267 SGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             SSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCEEEEecCCCcEEEEeCCC
Confidence            8 6788888999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=1.7e-28  Score=231.47  Aligned_cols=239  Identities=8%  Similarity=0.132  Sum_probs=190.0

Q ss_pred             CeEEEEEcCCCCEEE-EEe-CCcEEEEecCCCcce--EEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEE
Q 015198           46 ELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKET--FRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        46 ~V~~l~~s~~g~~la-~g~-dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      ....++++|+...++ +++ +|.|+||+++.....  ....+.+|...+.++.|++ ++.++++++.|     +.|++||
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d-----g~v~vw~  110 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED-----CTVMVWE  110 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETT-----SEEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCC-----CeEEEEE
Confidence            445688999876555 456 999999999754322  1122457888999999999 88899999888     9999999


Q ss_pred             CCCC-------cEEEEEe-ecCceeEEEEcCCe-EEEE---EcCeEEEEEcCCceeeEEE--eccCCCcceEEEccCCCc
Q 015198          121 DHQS-------RCIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLKLLHQI--ETLANLRGLCCLSHHSST  186 (411)
Q Consensus       121 ~~~~-------~~~~~~~-~~~~i~~~~~~~~~-~~~~---~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  186 (411)
                      +.++       +.+..+. |...|.+++|+|++ .+++   .|+.|++||+++++.+..+  ..|..  .+.++.+++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~  188 (402)
T 2aq5_A          111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD--TIYSVDWSRDG  188 (402)
T ss_dssp             CCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS--CEEEEEECTTS
T ss_pred             ccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC--ceEEEEECCCC
Confidence            9887       5667777 89999999999998 4555   6999999999999999888  56666  44555556666


Q ss_pred             eEEEEecCCCCeEEEEEcCC-cceEEE-eccccc-eeEEEecCCCCEEEEE---cCCCeEEEEEECCCCce-EEEEeCCC
Q 015198          187 SVLACPGLQRGQVRIEHFGL-NMIKLI-NAHDSH-IACFTLTLDGLLLATA---STRGTLIRIFNTVDGTR-LQEVRRGV  259 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~-~~~~~~-~~~~~~-i~~l~~sp~g~~l~s~---s~dg~~I~vwd~~~~~~-~~~~~~~~  259 (411)
                      .+|++ ++.||.|++|+... +.+..+ ..|... +.+++|+|++++|++|   +.|+. |++||+++++. +...... 
T Consensus       189 ~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~~~~-  265 (402)
T 2aq5_A          189 ALICT-SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQELD-  265 (402)
T ss_dssp             SCEEE-EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEEECC-
T ss_pred             CEEEE-EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEEecc-
Confidence            77776 56899999999764 556666 678776 8999999999999999   78999 99999998765 3333322 


Q ss_pred             CCcceEEEEeCCCCCEEEE-EeCCCcEEEEEccccc
Q 015198          260 DRAEIYSIALSPNVQWLAV-ASDKGTVHIFSLRVRV  294 (411)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s-~s~dg~I~vwd~~~~~  294 (411)
                      +...+.+++|+|++++|++ ++.||.|++||+.+++
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            5668999999999999975 5579999999999876

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=1.6e-28  Score=231.15  Aligned_cols=305  Identities=12%  Similarity=0.090  Sum_probs=214.4

Q ss_pred             CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-----------
Q 015198           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-----------  131 (411)
Q Consensus        64 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-----------  131 (411)
                      ++.+++|+++.......  +..|...+.++.|+| ++.++++++.|     +.|++||+.+++....+.           
T Consensus        22 ~~~~~v~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~   94 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDV--ERIHGGGINTLDIEPVEGRYMLSGGSD-----GVIVLYDLENSSRQSYYTCKAVCSIGRDH   94 (408)
T ss_dssp             HHHHHHHTEEECTTEEE--CCCCSSCEEEEEECTTTCCEEEEEETT-----SCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred             cCcceeeccccCcceee--eeccCCcEEEEEEecCCCCEEEEEcCC-----CeEEEEECCCCcccceEeccccccccccc
Confidence            45577888876544333  347888999999999 99999999888     999999998876655543           


Q ss_pred             ---ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC-CceEEEEecCCCCeEEEEE
Q 015198          132 ---FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS-STSVLACPGLQRGQVRIEH  203 (411)
Q Consensus       132 ---~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~dg~i~i~~  203 (411)
                         |...|.+++|+| ++.+++   .|+.|++||+.+++.+..+.. ...+..+.+.+.. ++.++++ |+.++.|++|+
T Consensus        95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d  172 (408)
T 4a11_B           95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-EETVYSHHMSPVSTKHCLVAV-GTRGPKVQLCD  172 (408)
T ss_dssp             TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSSCSSCCEEEE-EESSSSEEEEE
T ss_pred             cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-CCceeeeEeecCCCCCcEEEE-EcCCCeEEEEe
Confidence               788999999999 555555   599999999999998888863 4444555555543 3445554 66899999988


Q ss_pred             cC-CcceEEEeccccceeEEEecCCCC-EEEEEcCCCeEEEEEECCCCc-eEEEEeC-------------CCCCcceEEE
Q 015198          204 FG-LNMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTVDGT-RLQEVRR-------------GVDRAEIYSI  267 (411)
Q Consensus       204 ~~-~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~-~~~~~~~-------------~~~~~~v~~l  267 (411)
                      .. ++.+..+..|...|.+++|+|+++ +|++++.||. |++||++++. .+..+..             ..|...|.++
T Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          173 LKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR-VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             SSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             CCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCc-EEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            76 466778889999999999999998 6899999999 9999998876 3444311             2277899999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccc
Q 015198          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (411)
                      +|+|++++|++++.||.|++||+.+++.......+.............          ..+....-......+ ...+|+
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~i~v~d  320 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV----------SCGCSSEFVFVPYGS-TIAVYT  320 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE----------CCSSSSCEEEEEETT-EEEEEE
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE----------ecCCCceEEEEecCC-EEEEEE
Confidence            999999999999999999999999987654332221100000000000          000000000000000 001111


Q ss_pred             --cccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          348 --SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       348 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                        .......++.+.+.+..++|+++ ..|++++.||.+++|++..
T Consensus       321 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          321 VYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             CcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence              12334445555677888999998 7788888899999999986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-27  Score=217.15  Aligned_cols=241  Identities=13%  Similarity=0.176  Sum_probs=193.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      .....|...|.+++|+|++++|++|+ |+.|++|++..... .....+..+...+.++.|.++  .+++++.|     +.
T Consensus        53 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d-----~~  125 (313)
T 3odt_A           53 TVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG--VVISGSWD-----KT  125 (313)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETT--EEEEEETT-----SE
T ss_pred             EEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCC--EEEEEeCC-----CC
Confidence            34567899999999999999999999 99999999875421 112234467778888888544  56666666     99


Q ss_pred             EEEEECCCCcEEEEEe-ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEec-cCCCcceEEEccCCCceEE
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l  189 (411)
                      |++||  .++.+..+. |...+.++.+.+ ++..++   .|+.|++||  ..+....+.. +...+..++  +++++. +
T Consensus       126 i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~--~~~~~~-~  198 (313)
T 3odt_A          126 AKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLA--VVDDGH-F  198 (313)
T ss_dssp             EEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEE--EEETTE-E
T ss_pred             EEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEE--EcCCCe-E
Confidence            99999  677777777 899999999987 665555   689999999  4566666765 555444444  445555 4


Q ss_pred             EEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198          190 ACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (411)
                      ++ ++.||.|++|+.. ++.+..+..|...|.+++|+|++ .|++++.|+. |++||+++++.+..+..  |...|.+++
T Consensus       199 ~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~~~~~--~~~~i~~~~  273 (313)
T 3odt_A          199 IS-CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKENGSLKQVITL--PAISIWSVD  273 (313)
T ss_dssp             EE-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTTCCEEEEEEC--SSSCEEEEE
T ss_pred             EE-ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCCCceeEEEec--cCceEEEEE
Confidence            44 6689999999876 56778889999999999999999 5889999999 99999999999999987  777999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEccccccCCC
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVRVVGED  298 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~  298 (411)
                      |+|+++ +++++.||.|++||+++++....
T Consensus       274 ~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          274 CMSNGD-IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             ECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred             EccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence            999998 66799999999999999876543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.5e-27  Score=225.41  Aligned_cols=276  Identities=11%  Similarity=0.013  Sum_probs=218.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEe---ecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRR---DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      ...+.+++|+|++.+++++. ++.|++||+.+.+.....   .+..+...+..+.|++++.++++++.+     +.|++|
T Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~  196 (433)
T 3bws_A          122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-----NAVHVF  196 (433)
T ss_dssp             SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEE
T ss_pred             CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----CEEEEE
Confidence            34567999999777777777 889999999876544321   223566788889999999999999887     999999


Q ss_pred             ECCCCcEEEEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       120 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      |+.+++.+..+. +...+.+++|+|++..++    .++.|++||+++++.+..+..+.   ....+.+++++..+++++.
T Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          197 DLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIAQF  273 (433)
T ss_dssp             ETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEEEE
T ss_pred             ECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEEEC
Confidence            999999998887 788999999999987664    47999999999998887776543   3566777777777776542


Q ss_pred             -------CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEE-EEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE
Q 015198          195 -------QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLL-ATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (411)
Q Consensus       195 -------~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l-~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (411)
                             .|+.|++|+...........|...+..++|+|+++.+ ++++.++. |++||+.+++.+..+.   +...+.+
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~~~~~~~~---~~~~~~~  349 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK-IEVYDLKEKKVQKSIP---VFDKPNT  349 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSSEEE
T ss_pred             CCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE-EEEEECCCCcEEEEec---CCCCCCe
Confidence                   4789999998765555555677789999999999754 66688999 9999999998888776   4567999


Q ss_pred             EEeCCCCCEEEEEeC---------------CCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCC
Q 015198          267 IALSPNVQWLAVASD---------------KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP  331 (411)
Q Consensus       267 l~~spdg~~l~s~s~---------------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (411)
                      ++|+|+|++|++++.               ||.|++||+.+++...                                  
T Consensus       350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~----------------------------------  395 (433)
T 3bws_A          350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE----------------------------------  395 (433)
T ss_dssp             EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE----------------------------------
T ss_pred             EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE----------------------------------
Confidence            999999999988876               5799999998876432                                  


Q ss_pred             CCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEe-CCcEEEEEEe
Q 015198          332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM-DGSFYRCSFD  388 (411)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-dg~~~~~~~~  388 (411)
                                            .+.. ......++|+++ +.|++++. ||.+++|.++
T Consensus       396 ----------------------~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          396 ----------------------FWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ----------------------EEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ----------------------EecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                                  2222 124567889998 56677775 9999999886

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5e-28  Score=223.30  Aligned_cols=228  Identities=8%  Similarity=0.013  Sum_probs=172.3

Q ss_pred             EEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC-------
Q 015198           51 SWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH-------  122 (411)
Q Consensus        51 ~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~-------  122 (411)
                      .+.+++.+|++|+ ||.|++||+++.+......    ...+..+.++|+   +++++.|     +.|++|+..       
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D-----~~i~~w~~~~~~~~~~  110 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPC-----NRLLLLYPGNQITILD  110 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECST-----TEEEEEETTTEEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCC-----CeEEEEEccCceEEee
Confidence            4456788999999 9999999999866554432    233445667777   7788887     999999654       


Q ss_pred             --CCcEEEEEe--ecCceeEEEEcC--CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          123 --QSRCIGEFA--FRSDVRSVKLSR--DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       123 --~~~~~~~~~--~~~~i~~~~~~~--~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                        +++.+..+.  |...|.+++|+|  ++.+++   .|+.|++||+++++.+.....+.. ..+.++.+++++.+|++ |
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~~~pdg~~las-g  188 (343)
T 3lrv_A          111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD-VEYSSGVLHKDSLLLAL-Y  188 (343)
T ss_dssp             TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS-CCCCEEEECTTSCEEEE-E
T ss_pred             cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-CceEEEEECCCCCEEEE-E
Confidence              566566655  567899999999  888887   699999999999988766643322 13455566667777775 6


Q ss_pred             CCCCeEEEEEcCCcc-e-EEEec-cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC-CCcce--EEE
Q 015198          194 LQRGQVRIEHFGLNM-I-KLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-DRAEI--YSI  267 (411)
Q Consensus       194 ~~dg~i~i~~~~~~~-~-~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-~~~~v--~~l  267 (411)
                      +.||.|++|+..... + ..+.. |..+|.+++|+|+|.+|++++ ++. |++||+++++.+..+.... +...+  .++
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  266 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQT-VVCFDLRKDVGTLAYPTYTIPEFKTGTVTY  266 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSB-EEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred             cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCe-EEEEEcCCCCcceeecccccccccccceEE
Confidence            799999999977544 3 56777 999999999999999999999 458 9999999987654443200 11223  469


Q ss_pred             EeCCCCCEEEEEeC-CCcEEEEEccccc
Q 015198          268 ALSPNVQWLAVASD-KGTVHIFSLRVRV  294 (411)
Q Consensus       268 ~~spdg~~l~s~s~-dg~I~vwd~~~~~  294 (411)
                      +|+|+|++|++++. |+.|+||++++..
T Consensus       267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          267 DIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EECCCCCEEEEecCCCCcEEEEEEcccc
Confidence            99999999999998 9999999997765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=6.4e-29  Score=236.87  Aligned_cols=246  Identities=11%  Similarity=0.060  Sum_probs=183.5

Q ss_pred             ccCCCCCCeEEEEEcC-CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           39 FSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~-~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ...+|.+.|++|+|+| ++.+|++|+ |++|+|||+++.........+.....+.++.|++++.++++++.|     +.|
T Consensus       159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~i  233 (435)
T 4e54_B          159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNV-----GNV  233 (435)
T ss_dssp             CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSS-----SBE
T ss_pred             EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCC-----CcE
Confidence            3568999999999998 688999999 999999999864333333233445567788899999999999988     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeEEE---eccCCCcceEEEccCCCceE
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  188 (411)
                      ++||+.. +.+..+. |...|.+++|+|++. +++   .|+.|++||+++.+....+   ..|..  .+.++.+++++.+
T Consensus       234 ~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~spdg~~  310 (435)
T 4e54_B          234 ILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH--PVNAACFSPDGAR  310 (435)
T ss_dssp             EEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS--CEEECCBCTTSSE
T ss_pred             eeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc--cccceeECCCCCe
Confidence            9999764 4455555 899999999999875 443   6899999999876654433   34444  5667777888888


Q ss_pred             EEEecCCCCeEEEEEcCC-cceEEEecccc------ceeEEEecCCCCEEEEEc------------CCCeEEEEEECCCC
Q 015198          189 LACPGLQRGQVRIEHFGL-NMIKLINAHDS------HIACFTLTLDGLLLATAS------------TRGTLIRIFNTVDG  249 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~------~i~~l~~sp~g~~l~s~s------------~dg~~I~vwd~~~~  249 (411)
                      |++ |+.||.|+||+... .....+..|..      .+....|+|++.+++++.            .++. |++||..++
T Consensus       311 l~s-~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-i~iwd~~~g  388 (435)
T 4e54_B          311 LLT-TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT-IDVFDGNSG  388 (435)
T ss_dssp             EEE-EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC-EEEECSSSC
T ss_pred             eEE-EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE-EEEEECCCC
Confidence            876 66899999998764 44555554432      233456677776666553            3356 999999999


Q ss_pred             ceEEEEeCCCCCcceEEE-EeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          250 TRLQEVRRGVDRAEIYSI-ALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l-~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +.+..+..+ |...|.++ +|+|+|++|++|+ |+.|+||++++++.+
T Consensus       389 ~~~~~l~~~-~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          389 KMMCQLYDP-ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CEEEEECCS-SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             cEEEEEeCC-CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            999888654 66778877 6999999999876 788999999998754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=6.8e-28  Score=223.46  Aligned_cols=245  Identities=13%  Similarity=0.108  Sum_probs=199.0

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEec--cCCeEEEEecCCCCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLF--RCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~d~~~~d~  114 (411)
                      ....+|...|.+++|+|++++|++++ |+.|++||+++.+... .  ..+...+.++.|  ++++..+++++.|     +
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g  151 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-I--AQHDAPVKTIHWIKAPNYSCVMTGSWD-----K  151 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-E--EECSSCEEEEEEEECSSCEEEEEEETT-----S
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-e--ccccCceEEEEEEeCCCCCEEEEccCC-----C
Confidence            45668999999999999999999999 9999999999755433 2  256677778887  8999999999888     9


Q ss_pred             eEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEe--ccCCCcceEEEccCCCc--eEE
Q 015198          115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIE--TLANLRGLCCLSHHSST--SVL  189 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~l  189 (411)
                      .|++||+.+++.+..+.....+.++.+.++..+++ .++.+++|+++.........  ........+.+.+....  ..+
T Consensus       152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (368)
T 3mmy_A          152 TLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF  231 (368)
T ss_dssp             EEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred             cEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence            99999999999999999778899999998876666 79999999997764433332  12233345555554432  224


Q ss_pred             EEecCCCCeEEEEEcCC----cceEEEecccc------------ceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEE
Q 015198          190 ACPGLQRGQVRIEHFGL----NMIKLINAHDS------------HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~----~~~~~~~~~~~------------~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (411)
                      + +|+.||.|++|+...    ..+..+..|..            .|.+++|+|++++|++++.||. |++||+.+++++.
T Consensus       232 ~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~  309 (368)
T 3mmy_A          232 A-LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDARTKLK  309 (368)
T ss_dssp             E-EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEE
T ss_pred             E-EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCCcEEE
Confidence            4 467899999999876    45667777776            7999999999999999999999 9999999999998


Q ss_pred             EEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .+..  |...|.+++|+|+|++|++++.|+..+.|++...+
T Consensus       310 ~~~~--~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          310 TSEQ--LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             ECCC--CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred             EecC--CCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence            8887  78899999999999999999999876666655444

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=2.2e-29  Score=235.06  Aligned_cols=240  Identities=13%  Similarity=0.104  Sum_probs=185.1

Q ss_pred             CCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC--cEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEc
Q 015198           86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS--RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSF  159 (411)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~  159 (411)
                      +...+.++.|++++.++++++.|     +.|++||+.++  +.+..+. |...|.+++|+|++.+++   .|+.|++||+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             CCCcEEEEEECCCCCEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            34467788899999999999888     99999999888  5666666 899999999999988777   6899999999


Q ss_pred             CCce---eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc----eEEEec-cccceeEEEecCCCCEE
Q 015198          160 VDLK---LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINA-HDSHIACFTLTLDGLLL  231 (411)
Q Consensus       160 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~----~~~~~~-~~~~i~~l~~sp~g~~l  231 (411)
                      .+++   ....+..|..  .+.++.+++++.+|++ |+.|+.|++|+.....    ...+.. |...|.+++|+|++++|
T Consensus        85 ~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNR--AATFVRWSPNEDKFAV-GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             ----CCCCEEECCCCSS--CEEEEECCTTSSCCEE-EESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             CCCCceeeeeEecccCC--ceEEEEECCCCCEEEE-EecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            8876   4555566665  4556666667777775 5689999999887653    677777 99999999999999999


Q ss_pred             EEEcCCCeEEEEEECCC------------------CceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          232 ATASTRGTLIRIFNTVD------------------GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       232 ~s~s~dg~~I~vwd~~~------------------~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      ++++.|+. |++||+..                  ++.+..+ .  |...|.+++|+|++++|++++.||.|++||++++
T Consensus       162 ~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          162 AAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P--SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEEESSSC-EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C--CSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             EEEeCCCE-EEEEEEEecccCCCccccccccccchhhhhhcc-c--CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            99999999 99999853                  4455555 3  8889999999999999999999999999999988


Q ss_pred             ccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEE
Q 015198          294 VVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTV  373 (411)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (411)
                      +....                                                    ....+..+...+..++|++++.+
T Consensus       238 ~~~~~----------------------------------------------------~~~~~~~~~~~v~~~~~s~~~~~  265 (377)
T 3dwl_C          238 EQPPR----------------------------------------------------ALITVKLSQLPLRSLLWANESAI  265 (377)
T ss_dssp             TSCEE----------------------------------------------------ECCCEECSSSCEEEEEEEETTEE
T ss_pred             CCcce----------------------------------------------------eeEeecCCCCceEEEEEcCCCCE
Confidence            75100                                                    00123333456678899999888


Q ss_pred             EEEEeCCcEEEEEEec
Q 015198          374 VIVSMDGSFYRCSFDP  389 (411)
Q Consensus       374 ~~~~~dg~~~~~~~~~  389 (411)
                      ++++.++.+.+|....
T Consensus       266 l~~~~~~~~~~~~~~~  281 (377)
T 3dwl_C          266 VAAGYNYSPILLQGNE  281 (377)
T ss_dssp             EEEESSSSEEEECCCC
T ss_pred             EEEEcCCcEEEEEeCC
Confidence            8999998888997763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=4.5e-27  Score=223.74  Aligned_cols=253  Identities=11%  Similarity=0.126  Sum_probs=190.0

Q ss_pred             CCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEEEEECCC----------CcEEEEEe-ecCceeEEEEcCCeE-EEE--
Q 015198           85 SGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQ----------SRCIGEFA-FRSDVRSVKLSRDRI-VVV--  149 (411)
Q Consensus        85 ~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~vwd~~~----------~~~~~~~~-~~~~i~~~~~~~~~~-~~~--  149 (411)
                      .|...+.++.|+++ ..++++++.+     |.|++||+.+          .+.+..+. |...|.+++|+|++. +++  
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~d-----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPS-----SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSS-----SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCC-----CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            56667888899997 6788888887     9999999876          56666666 899999999999876 555  


Q ss_pred             -EcCeEEEEEcCCcee-------eEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC----cceEEEecccc
Q 015198          150 -LEHKIYVYSFVDLKL-------LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL----NMIKLINAHDS  217 (411)
Q Consensus       150 -~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~  217 (411)
                       .||.|++||+.++..       ...+..|...+..+++++. ++.+++ +++.||.|++|+...    ..+..+..|..
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~-s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFG-SVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEE-EEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEE-EEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence             689999999987322       3455566665555555443 334554 466899999999875    36777889999


Q ss_pred             ceeEEEecCCCC-EEEEEcCCCeEEEEEECCC-CceEEEEeCCCCCcceEEEEeCCCCC-EEEEEeCCCcEEEEEccccc
Q 015198          218 HIACFTLTLDGL-LLATASTRGTLIRIFNTVD-GTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       218 ~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~-~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .|++++|+|++. +|++|+.||. |++||+++ +..+..+..  |...|.+++|+|+++ +|++++.||.|+|||+....
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            999999999997 7899999999 99999998 566788887  788999999999985 68999999999999998854


Q ss_pred             cCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-C-E
Q 015198          295 VGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-N-T  372 (411)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~  372 (411)
                      ........+                         ..+           +      .....+..+...+..++|+++ . .
T Consensus       356 ~~~~~~~~~-------------------------~~~-----------~------~~~~~~~~h~~~v~~~~~~p~~~~~  393 (430)
T 2xyi_A          356 EEQSTEDAE-------------------------DGP-----------P------ELLFIHGGHTAKISDFSWNPNEPWI  393 (430)
T ss_dssp             CCCCHHHHH-------------------------HCC-----------T------TEEEECCCCSSCEEEEEECSSSTTE
T ss_pred             cccCccccc-------------------------cCC-----------c------ceEEEcCCCCCCceEEEECCCCCCE
Confidence            321000000                         000           0      001111222345778899998 4 6


Q ss_pred             EEEEEeCCcEEEEEEec
Q 015198          373 VVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       373 ~~~~~~dg~~~~~~~~~  389 (411)
                      |++++.||.|++|.+..
T Consensus       394 l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          394 ICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EEEEETTSEEEEEEECH
T ss_pred             EEEEECCCCEEEeEccc
Confidence            88888899999999985

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=2.3e-26  Score=215.65  Aligned_cols=222  Identities=16%  Similarity=0.109  Sum_probs=179.1

Q ss_pred             EEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEE-EecCCCCCCCCCeEEEEECCCCcEEEEEeecCc
Q 015198           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSD  135 (411)
Q Consensus        58 ~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~  135 (411)
                      ++++++ |+.|++||+++.+......   ++..+.++.|++++..+ ++++.+     +.|++||+.+++.+..+.+...
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~   75 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIP---VGSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAGSS   75 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSSS
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEee---cCCCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEEEECCCC
Confidence            566777 9999999998865544433   23347889999988644 666666     9999999999999999987779


Q ss_pred             eeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceE
Q 015198          136 VRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIK  210 (411)
Q Consensus       136 i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~  210 (411)
                      +.+++|+|++..++    .++.|++||+.+++.+..+..+.   ....+.+++++..++++++.++.|++|+... +.+.
T Consensus        76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            99999999998664    46999999999999888887654   3456677777777766677899999998765 4445


Q ss_pred             EEeccccceeEEEecCCCCEE-EEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEe---CCCcEE
Q 015198          211 LINAHDSHIACFTLTLDGLLL-ATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTVH  286 (411)
Q Consensus       211 ~~~~~~~~i~~l~~sp~g~~l-~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~I~  286 (411)
                      .+..+ ..+..++|+|++++| ++++.++. |++||+++++.+..+.   +...+.+++|+|++++|++++   .++.|+
T Consensus       153 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~  227 (391)
T 1l0q_A          153 TVSVG-RSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVS  227 (391)
T ss_dssp             EEECC-SSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred             EEecC-CCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcEE
Confidence            55544 556899999999977 57788899 9999999998887776   455789999999999999888   689999


Q ss_pred             EEEcccccc
Q 015198          287 IFSLRVRVV  295 (411)
Q Consensus       287 vwd~~~~~~  295 (411)
                      +||+.+++.
T Consensus       228 ~~d~~~~~~  236 (391)
T 1l0q_A          228 MIDTGTNKI  236 (391)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCCeE
Confidence            999988764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=3e-27  Score=225.30  Aligned_cols=237  Identities=13%  Similarity=0.268  Sum_probs=189.1

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+|.+.|.+++|  ++++|++|+ ||.|++||+.+.+....  +..|...+.++.|+++  .+++++.|     +.|
T Consensus       167 ~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~--~l~s~s~d-----g~i  235 (435)
T 1p22_A          167 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNG--MMVTCSKD-----RSI  235 (435)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE--ECCCCSCEEEEECCTT--EEEEEETT-----SCE
T ss_pred             EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE--EcCCCCcEEEEEEcCC--EEEEeeCC-----CcE
Confidence            346689999999999  788999999 99999999998665443  4477788899999865  56666776     999


Q ss_pred             EEEECCCCcEE---EEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          117 IIWDDHQSRCI---GEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       117 ~vwd~~~~~~~---~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      ++||+.+++.+   ..+. |...|.++.+..+....+ .|+.|++||+++++.+..+..|...+.  ++.+++  .++++
T Consensus       236 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~--~~l~~  311 (435)
T 1p22_A          236 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRD--RLVVS  311 (435)
T ss_dssp             EEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE--EEEEET--TEEEE
T ss_pred             EEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEE--EEEeCC--CEEEE
Confidence            99999888765   3333 889999999955443333 799999999999999999998887554  444443  45554


Q ss_pred             ecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc---------eEEEEeCCCCC
Q 015198          192 PGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT---------RLQEVRRGVDR  261 (411)
Q Consensus       192 ~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~---------~~~~~~~~~~~  261 (411)
                       |+.||.|++|+.. ++.+..+.+|...|.+++|  ++.+|++|+.||. |++||+.+++         .+..+..  |.
T Consensus       312 -g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~--h~  385 (435)
T 1p22_A          312 -GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLVE--HS  385 (435)
T ss_dssp             -EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEECC--CS
T ss_pred             -EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCccccccchheeeccC--CC
Confidence             6689999999876 5778888999999999999  7889999999999 9999997766         7778877  88


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198          262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      ..|.+++|  ++.+|++++.||.|++||+.++....
T Consensus       386 ~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          386 GRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             SCCCCEEE--CSSCEEECCSSSEEEEEC--------
T ss_pred             CCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence            89999999  78899999999999999999876543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=1.3e-27  Score=219.74  Aligned_cols=229  Identities=13%  Similarity=0.100  Sum_probs=189.0

Q ss_pred             ccCCCCCCeEEEEEcCCCC-EEEEEe-CCcEEEEec-CCCcceEEeecCC--CCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           39 FSDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNC-EPFKETFRRDLKS--GGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~-~la~g~-dg~i~iw~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      ...+|...|.+++|+|+++ +|++|+ |+.|++|++ ++...   ..+..  +...+.++.|++ +..+++++.|     
T Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d-----  121 (342)
T 1yfq_A           51 QSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF---QALTNNEANLGICRICKYG-DDKLIAASWD-----  121 (342)
T ss_dssp             EEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---EECBSCCCCSCEEEEEEET-TTEEEEEETT-----
T ss_pred             eeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---EeccccCCCCceEEEEeCC-CCEEEEEcCC-----
Confidence            3458999999999999999 999999 999999999 76443   23446  788889999998 7777888877     


Q ss_pred             CeEEEEECCC---------CcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCC-ceeeE--EEeccCCCcceEEE
Q 015198          114 TKVIIWDDHQ---------SRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD-LKLLH--QIETLANLRGLCCL  180 (411)
Q Consensus       114 ~~i~vwd~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~-~~~~~--~~~~~~~~~~~~~~  180 (411)
                      +.|++||+.+         ++++..+.+...|.+++|++++.+++ .|+.|++||+++ ++...  ....+..  .+.++
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~i~~i  199 (342)
T 1yfq_A          122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY--QIRDV  199 (342)
T ss_dssp             SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSS--CEEEE
T ss_pred             CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCC--ceeEE
Confidence            9999999887         76666667889999999999993333 789999999987 54322  2233333  55666


Q ss_pred             ccCC-CceEEEEecCCCCeEEEEEcCC-------cceEEEecccc---------ceeEEEecCCCCEEEEEcCCCeEEEE
Q 015198          181 SHHS-STSVLACPGLQRGQVRIEHFGL-------NMIKLINAHDS---------HIACFTLTLDGLLLATASTRGTLIRI  243 (411)
Q Consensus       181 ~~~~-~~~~l~~~g~~dg~i~i~~~~~-------~~~~~~~~~~~---------~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (411)
                      .+++ ++.++++ |+.||.|++|+.+.       .....+..|..         .|.+++|+|++++|++++.||. |++
T Consensus       200 ~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~v  277 (342)
T 1yfq_A          200 ALLPKEQEGYAC-SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISC  277 (342)
T ss_dssp             EECSGGGCEEEE-EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEE
T ss_pred             EECCCCCCEEEE-EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEE
Confidence            7777 6777776 56899999988754       55677788865         9999999999999999999999 999


Q ss_pred             EECCCCceEEEEeCCCC-CcceEEEEeCCCCCEEEEEeCCCc
Q 015198          244 FNTVDGTRLQEVRRGVD-RAEIYSIALSPNVQWLAVASDKGT  284 (411)
Q Consensus       244 wd~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~dg~  284 (411)
                      ||+.+++.+..+..  | ...|.+++  |++++|++++.||.
T Consensus       278 wd~~~~~~~~~~~~--~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          278 WNLQTRKKIKNFAK--FNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             EETTTTEEEEECCC--CSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             EcCccHhHhhhhhc--ccCCCceEec--CCCCeEEEEecCCc
Confidence            99999999988887  5 88999999  99999999999998

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=1e-26  Score=213.41  Aligned_cols=287  Identities=11%  Similarity=0.103  Sum_probs=193.9

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC----cEEEEEe-ecCceeEEEEcC--CeEEEE---EcC
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA-FRSDVRSVKLSR--DRIVVV---LEH  152 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~----~~~~~~~-~~~~i~~~~~~~--~~~~~~---~dg  152 (411)
                      +.+|...+.++.|++++.++++++.|     +.|++||+.++    +.+..+. |...|.+++|+|  ++.+++   .|+
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg   81 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK   81 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCC-----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence            34788899999999999999999988     99999998876    3555565 899999999999  466666   699


Q ss_pred             eEEEEEcCCc---------eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEE----------
Q 015198          153 KIYVYSFVDL---------KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLI----------  212 (411)
Q Consensus       153 ~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~----------  212 (411)
                      .|++||++++         +.+..+..|...+..+++.++..+.++++ ++.||.|++|+... +.+..+          
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC-LGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE-ecCCCcEEEecCCChHHhccccccccccccc
Confidence            9999999876         55777777777555444444321667765 56899999998654 222221          


Q ss_pred             ---eccccceeEEEecCC---CCEEEEEcCCCeEEEEEECCCCce--EEEEeCCCCCcceEEEEeCCCC----CEEEEEe
Q 015198          213 ---NAHDSHIACFTLTLD---GLLLATASTRGTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNV----QWLAVAS  280 (411)
Q Consensus       213 ---~~~~~~i~~l~~sp~---g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg----~~l~s~s  280 (411)
                         ..|...+.+++|+|+   +.+|++++.++. +.+|+...++.  +..+..  |...|.+++|+|++    ++|++++
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDGKLHVAAKLPG--HKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTSCEEEEEECCC--CCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCCceeeeeecCC--CCcceeEEEECCCCCCcceEEEEEc
Confidence               157889999999997   899999999999 98888877775  444444  88899999999998    8999999


Q ss_pred             CCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccc--ccceEEEEeC
Q 015198          281 DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS--EWSFAQFHIP  358 (411)
Q Consensus       281 ~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  358 (411)
                      .||.|++||++++...........    .......+................        .....+..  ......++-+
T Consensus       238 ~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~h  305 (351)
T 3f3f_A          238 KDGRIRIFKITEKLSPLASEESLT----NSNMFDNSADVDMDAQGRSDSNTE--------EKAELQSNLQVELLSEHDDH  305 (351)
T ss_dssp             TTSCEEEEEEEECC---------------------------------------------------CCSEEEEEEEEECTT
T ss_pred             CCCeEEEEeCCCCcCccccCCccc----ceeccCCCcccccccccccccccc--------eeeeecccccccEEEEEecc
Confidence            999999999998754432111100    000000000000000000000000        00011111  1122334444


Q ss_pred             CCceEEEEEccC-CEEEEEEeCCcEEEEEEecC
Q 015198          359 EVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPV  390 (411)
Q Consensus       359 ~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~  390 (411)
                      ...+..++|+++ +.|++++.||.|++|++...
T Consensus       306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence            567888999998 67888888999999999973

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=6.7e-27  Score=217.53  Aligned_cols=279  Identities=13%  Similarity=0.071  Sum_probs=205.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CC-------cEEEEecCCCcce--------EEeecCCCCEEEEEEeccCCeEEEE----
Q 015198           44 EIELISVSWNQDYGCFAAGT-SC-------GFRIYNCEPFKET--------FRRDLKSGGFRIVEMLFRCNILALV----  103 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~-dg-------~i~iw~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~----  103 (411)
                      .-+|++++|+||+++|++|+ +.       .|++|+++.....        ....+..+...+.++.++++..+..    
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence            45899999999999999987 32       4999998754321        1233456666677777766644322    


Q ss_pred             -----ecCCCCCCCCCeEEEEECCCCcE-EEEEe---------ecCceeEEEEcCCeEEEE-----EcCeEEEEEcCCce
Q 015198          104 -----GAGDNSQYPPTKVIIWDDHQSRC-IGEFA---------FRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLK  163 (411)
Q Consensus       104 -----s~~~d~~~~d~~i~vwd~~~~~~-~~~~~---------~~~~i~~~~~~~~~~~~~-----~dg~i~iwd~~~~~  163 (411)
                           +++.|     +.+++|++..... +....         +...+.+++|+|||++++     .|+.|++||+++++
T Consensus        94 ~~~l~s~~~d-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~  168 (365)
T 4h5i_A           94 STKITQGKGN-----KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT  168 (365)
T ss_dssp             HHHHHHTSCC-----CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred             ccEEEEecCC-----CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence                 23334     8999999766532 22221         234588999999998865     48999999999999


Q ss_pred             eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEE--EeccccceeEEEecCCCCEEEEEcCCC---
Q 015198          164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL--INAHDSHIACFTLTLDGLLLATASTRG---  238 (411)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~--~~~~~~~i~~l~~sp~g~~l~s~s~dg---  238 (411)
                      .+..+. +...  +.+++++|++.++++ ++.++.+.+|...+..+..  ...|...|.+++|+|+++++++++.|+   
T Consensus       169 ~~~~~~-~~~~--V~~v~fspdg~~l~s-~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~  244 (365)
T 4h5i_A          169 EKFEIE-TRGE--VKDLHFSTDGKVVAY-ITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG  244 (365)
T ss_dssp             EEEEEE-CSSC--CCEEEECTTSSEEEE-ECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred             EEEEeC-CCCc--eEEEEEccCCceEEe-ccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence            998886 4444  445566667788876 4455554446666655433  356888999999999999999998877   


Q ss_pred             -eEEEEEECCCCce----EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccc
Q 015198          239 -TLIRIFNTVDGTR----LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELL  313 (411)
Q Consensus       239 -~~I~vwd~~~~~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~  313 (411)
                       . +++||+..+..    ...+..  |...|++++|+|||++||+|+.|++|+|||+++++......             
T Consensus       245 ~~-i~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-------------  308 (365)
T 4h5i_A          245 IV-LTKISIKSGNTSVLRSKQVTN--RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK-------------  308 (365)
T ss_dssp             EE-EEEEEEETTEEEEEEEEEEES--SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET-------------
T ss_pred             eE-EeecccccceecceeeeeecC--CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec-------------
Confidence             5 88999877653    234555  77899999999999999999999999999999987543210             


Q ss_pred             cCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          314 NHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                                                +.+...+..++|+|+ ..|++++.||.|+||.++.
T Consensus       309 ------------------------------------------~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          309 ------------------------------------------QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             ------------------------------------------TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             ------------------------------------------CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence                                                      112356788999999 6788888899999999976

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.6e-28  Score=233.40  Aligned_cols=226  Identities=12%  Similarity=0.064  Sum_probs=177.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+-...|.+|+|+|||+++|+++ |++|+  |....+.     +.+|...+..+.|+|++       .+     +.+.
T Consensus        10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-----l~gh~~~v~~V~FsPdg-------~~-----~~~~   70 (588)
T 2j04_A           10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-----INCNSKNLFHVKEFPLE-------FE-----NKLD   70 (588)
T ss_dssp             CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC-----CSSBGGGTEEEEEECCC-------CC-----CTTT
T ss_pred             cHhHhhccEEEEEECCCCCEEEEEcCCceee--cccccce-----ecCCCccEEEEEECCCC-------Cc-----ceEE
Confidence            3455668899999999999999999 99999  6544322     34788899999999988       33     7777


Q ss_pred             EEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCC---cceEEEccCCCceEEEE
Q 015198          118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANL---RGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~  191 (411)
                      +|+.+. ..+..+.+...|.+++|+|+|..++   .||.|++||.+.  ++..+. |..+   ..+.+++++|++++||+
T Consensus        71 ~~~~~~-~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAs  146 (588)
T 2j04_A           71 FELAQQ-NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVV  146 (588)
T ss_dssp             TSCCCS-SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred             EEeCCC-ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEE
Confidence            776432 2233334678899999999999888   799999999543  555555 4431   24667888888889987


Q ss_pred             ecCCCCeEEEEEcCCcc--------eEEE----eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce---EEEEe
Q 015198          192 PGLQRGQVRIEHFGLNM--------IKLI----NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR---LQEVR  256 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~~--------~~~~----~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~---~~~~~  256 (411)
                       |+.||+|+||+...+.        +..+    .+|...|.+++|+|+|  |++++.|+. |++||+..++.   ..++.
T Consensus       147 -gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          147 -GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             -EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSSSCCCEEEEE
T ss_pred             -EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCccccceeeec
Confidence             5689999999988763        4666    5677899999999999  788888999 99999988773   35664


Q ss_pred             CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      .+ |...|.+++|+  |+.||+++ +++|++||+.+++.
T Consensus       223 ~~-h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~  257 (588)
T 2j04_A          223 NA-SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI  257 (588)
T ss_dssp             CC-CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred             cc-ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE
Confidence            32 77899999999  68899887 69999999998775

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.8e-25  Score=209.53  Aligned_cols=241  Identities=10%  Similarity=0.031  Sum_probs=195.2

Q ss_pred             CCCeEEEEEcCCCCEE-EEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEE-EecCCCCCCCCCeEEEEE
Q 015198           44 EIELISVSWNQDYGCF-AAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~l-a~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~~i~vwd  120 (411)
                      ...+.+++|+|++++| ++++ ++.|++||+.+.+......  .+ ..+..+.|++++..+ +++..+     +.|++||
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--~~-~~v~~~~~spdg~~l~~~~~~~-----~~v~v~d  102 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--AG-SSPQGVAVSPDGKQVYVTNMAS-----STLSVID  102 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--CS-SSEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred             CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--CC-CCccceEECCCCCEEEEEECCC-----CEEEEEE
Confidence            3458999999999987 5665 9999999998866544443  22 278889999987654 566666     9999999


Q ss_pred             CCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      +.+++.+..+.+...+.+++|+|++..++    .++.|++||+.+++.+..+..+..   ...+.+++++..+++++..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~dg~~l~~~~~~~  179 (391)
T 1l0q_A          103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS---PKGIAVTPDGTKVYVANFDS  179 (391)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEETTT
T ss_pred             CCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC---cceEEECCCCCEEEEEeCCC
Confidence            99999999888878899999999987663    589999999999999888876543   35566677777776667789


Q ss_pred             CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEc---CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCC
Q 015198          197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS---TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (411)
Q Consensus       197 g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s---~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (411)
                      +.|++|+...........+...+.+++|+|+|++|++++   .++. |++||+.+++.+..+..  +. .+.+++|+|++
T Consensus       180 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~~~~--~~-~~~~~~~s~dg  255 (391)
T 1l0q_A          180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPV--GP-DPAGIAVTPDG  255 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEEC--CS-SEEEEEECTTS
T ss_pred             CEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEEEec--CC-CccEEEEccCC
Confidence            999999987665555555677899999999999998887   6888 99999999999888876  32 57899999999


Q ss_pred             CEE-EEEeCCCcEEEEEccccccCCCC
Q 015198          274 QWL-AVASDKGTVHIFSLRVRVVGEDS  299 (411)
Q Consensus       274 ~~l-~s~s~dg~I~vwd~~~~~~~~~~  299 (411)
                      ++| ++++.|+.|++||+.+++....+
T Consensus       256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          256 KKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence            987 56688999999999998765433

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=3.9e-27  Score=224.83  Aligned_cols=199  Identities=11%  Similarity=0.146  Sum_probs=156.9

Q ss_pred             CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc-----------EEEEEe-ec------------CceeEEE
Q 015198           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-----------CIGEFA-FR------------SDVRSVK  140 (411)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~-----------~~~~~~-~~------------~~i~~~~  140 (411)
                      .+...|.++.|++++.+|++++.|     +.|+|||+.+++           .+..+. |.            ..|.+++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKG-----GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETT-----SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCC-----CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence            346778999999999999999988     999999988776           466666 76            8899999


Q ss_pred             EcCCe--EEEE---EcCeEEEEEcCCceee---------------------------------------EEE-eccCCCc
Q 015198          141 LSRDR--IVVV---LEHKIYVYSFVDLKLL---------------------------------------HQI-ETLANLR  175 (411)
Q Consensus       141 ~~~~~--~~~~---~dg~i~iwd~~~~~~~---------------------------------------~~~-~~~~~~~  175 (411)
                      |+|++  ..++   .|+.|++||+.+++..                                       ..+ ..|...+
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            99997  3444   7999999999764432                                       122 3455544


Q ss_pred             ceEEEccCCCceEEEEecCCCCeEEEEEcC-Cc-ceE-------EEeccccceeEEEecCCC-CEEEEEcCCCeEEEEEE
Q 015198          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LN-MIK-------LINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFN  245 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~-~~~-------~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd  245 (411)
                      .  ++.+++++.+|++ | .|+.|++|+.. .. .+.       .+.+|...|.+++|+|++ ++|++++.|+. |++||
T Consensus       181 ~--~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd  255 (447)
T 3dw8_B          181 N--SISINSDYETYLS-A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCD  255 (447)
T ss_dssp             C--EEEECTTSSEEEE-E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEE
T ss_pred             E--EEEEcCCCCEEEE-e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEE
Confidence            4  4555556677776 5 69999999987 32 333       245899999999999999 99999999999 99999


Q ss_pred             CCCCce----EEEEeCCCCCc------------ceEEEEeCCCCCEEEEEeCCCcEEEEEccc-cccC
Q 015198          246 TVDGTR----LQEVRRGVDRA------------EIYSIALSPNVQWLAVASDKGTVHIFSLRV-RVVG  296 (411)
Q Consensus       246 ~~~~~~----~~~~~~~~~~~------------~v~~l~~spdg~~l~s~s~dg~I~vwd~~~-~~~~  296 (411)
                      +++++.    +..+..  |..            .|.+++|+|+|++|++++. +.|+|||+++ ++..
T Consensus       256 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~  320 (447)
T 3dw8_B          256 MRASALCDRHSKLFEE--PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV  320 (447)
T ss_dssp             TTTCSSSCTTCEEECC--C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred             CcCCccccceeeEecc--CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc
Confidence            999886    677776  544            8999999999999999999 9999999987 5544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1.4e-25  Score=200.77  Aligned_cols=241  Identities=9%  Similarity=0.110  Sum_probs=162.5

Q ss_pred             CeEEEEEcCCCC---EEEEEeCCcEEEEecCCC---cceEEeecCC-----------------------CCEEEEEEecc
Q 015198           46 ELISVSWNQDYG---CFAAGTSCGFRIYNCEPF---KETFRRDLKS-----------------------GGFRIVEMLFR   96 (411)
Q Consensus        46 ~V~~l~~s~~g~---~la~g~dg~i~iw~~~~~---~~~~~~~~~~-----------------------~~~~~~~~~~~   96 (411)
                      .+.++-|-..|-   .++++++..|++|+....   ++....+++.                       +...+..++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            355666654433   677777999999999875   3333333211                       12245566777


Q ss_pred             CC----eEEEEecCCCC---------------CCCCCeEEEEEC-CCCcEEEEEe-ecCceeEEEEcC---CeEEEE---
Q 015198           97 CN----ILALVGAGDNS---------------QYPPTKVIIWDD-HQSRCIGEFA-FRSDVRSVKLSR---DRIVVV---  149 (411)
Q Consensus        97 ~~----~~~l~s~~~d~---------------~~~d~~i~vwd~-~~~~~~~~~~-~~~~i~~~~~~~---~~~~~~---  149 (411)
                      |+    +..+++++.+.               ...++.|++|++ .+|+.+..+. |...+..++|++   ++.+++   
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS  200 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT  200 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred             CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence            77    66666544210               012488888887 4477777666 777788888887   566777   


Q ss_pred             EcCeEEEEEcCCceeeEEEeccCC-CcceEEEccCCCceEEE-----------EecCCCCeEEEEEcCCcc-eEEE----
Q 015198          150 LEHKIYVYSFVDLKLLHQIETLAN-LRGLCCLSHHSSTSVLA-----------CPGLQRGQVRIEHFGLNM-IKLI----  212 (411)
Q Consensus       150 ~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-----------~~g~~dg~i~i~~~~~~~-~~~~----  212 (411)
                      .|++|++||++++++++.+..+.. ...+.+.+++|++.+++           .+|+.|++|++|+..... +..+    
T Consensus       201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~  280 (356)
T 2w18_A          201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL  280 (356)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence            699999999999999999986543 22344444555666652           467899999999876544 3332    


Q ss_pred             -eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcce-EEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198          213 -NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI-YSIALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       213 -~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v-~~l~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                       .+|...+.+..+  ++.++++++.|++ |+|||+.+++++.++.+  |...+ ..++|+|||++|++|+.|++|+|||+
T Consensus       281 p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          281 PPGQAGRFLEGDV--KDHCAAAILTSGT-IAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CTTCCCCEEEEEE--ETTEEEEEETTSC-EEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cCCCcceeEcccc--CCCEEEEEcCCCc-EEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence             256555544444  4789999999999 99999999999999987  55544 46899999999999999999999996


Q ss_pred             c
Q 015198          291 R  291 (411)
Q Consensus       291 ~  291 (411)
                      .
T Consensus       356 ~  356 (356)
T 2w18_A          356 S  356 (356)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=5e-26  Score=213.86  Aligned_cols=228  Identities=11%  Similarity=0.036  Sum_probs=141.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEE---eecCCCCEEEEEEeccC--------CeEEEEecCCCC
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR---RDLKSGGFRIVEMLFRC--------NILALVGAGDNS  109 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~l~s~~~d~  109 (411)
                      .|...+....+.+++.+|++++ |++|+|||.+.......   ..+.+|...|.++.|+|        ++.+|++++.| 
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D-  165 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD-  165 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT-
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC-
Confidence            3444444555556677899999 99999999987544322   23567888999999987        78999999998 


Q ss_pred             CCCCCeEEEEECCCCcEEEEE-eecCceeEEEEcCCeE-EEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC
Q 015198          110 QYPPTKVIIWDDHQSRCIGEF-AFRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS  184 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (411)
                          ++|+|||+.++..+..+ .|...+.+++|+|++. +++   .|+.|++||+++++.......+........+.+. 
T Consensus       166 ----~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~-  240 (393)
T 4gq1_A          166 ----CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN-  240 (393)
T ss_dssp             ----SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE-
T ss_pred             ----CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc-
Confidence                99999999887766555 4899999999999875 454   6999999999988766554333221111111111 


Q ss_pred             CceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEec-CCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc
Q 015198          185 STSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLT-LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE  263 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~s-p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~  263 (411)
                                        ...........+|...+.++.|+ ++|+.|++++.|+. +++||+.+++....+..  +...
T Consensus       241 ------------------~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~--~~~~  299 (393)
T 4gq1_A          241 ------------------TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISD--STMK  299 (393)
T ss_dssp             ------------------SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC-----------------
T ss_pred             ------------------cccceeeeecccccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEee--ecCc
Confidence                              11111122235788899999986 89999999999999 99999988876666554  3333


Q ss_pred             eEEEEe------------------CC--CCCEEEEEeCCCcEEEEEccccccC
Q 015198          264 IYSIAL------------------SP--NVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       264 v~~l~~------------------sp--dg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +..+.+                  +|  ++.++++|+.||.|+|||+.+++..
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~  352 (393)
T 4gq1_A          300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN  352 (393)
T ss_dssp             ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred             cccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            333333                  22  3446778889999999999988654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=3.7e-25  Score=210.31  Aligned_cols=239  Identities=10%  Similarity=0.075  Sum_probs=193.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEE-EecCCCCCCCCCeEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVI  117 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~~i~  117 (411)
                      ..+|.+.|.+++|+++++++++++ |+.|++||+++.+......  .+...+..+.|++++..+ +++..+     +.|+
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~  237 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD--LTGKWSKILLYDPIRDLVYCSNWIS-----EDIS  237 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE--CSSSSEEEEEEETTTTEEEEEETTT-----TEEE
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc--CCCCCeeEEEEcCCCCEEEEEecCC-----CcEE
Confidence            347889999999999999999999 9999999998765544433  566677888899877544 566566     9999


Q ss_pred             EEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E---------cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L---------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                      +||+.+++.+..+.....+.+++|+|++..++  .         |+.|++||+.+++.+..+....   ....+.+++++
T Consensus       238 ~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g  314 (433)
T 3bws_A          238 VIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTE  314 (433)
T ss_dssp             EEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSST
T ss_pred             EEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCC
Confidence            99999999988888777899999999997665  2         6799999999998877764322   34455666777


Q ss_pred             eEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC---------------CCeEEEEEECCCCce
Q 015198          187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---------------RGTLIRIFNTVDGTR  251 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---------------dg~~I~vwd~~~~~~  251 (411)
                      ..++++++.++.|++|+...........+...+.+++|+|+|++|++++.               ||. |++||+.+++.
T Consensus       315 ~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~~~  393 (433)
T 3bws_A          315 NKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTDTV  393 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTTEE
T ss_pred             CEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCCcE
Confidence            66666677899999999876544444457788999999999998888776               468 99999999999


Q ss_pred             EEEEeCCCCCcceEEEEeCCCCCEEEEEeC-CCcEEEEEccc
Q 015198          252 LQEVRRGVDRAEIYSIALSPNVQWLAVASD-KGTVHIFSLRV  292 (411)
Q Consensus       252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~~  292 (411)
                      +..+..   ...+.+++|+|+|++|++++. |+.|++|+++.
T Consensus       394 ~~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          394 KEFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            888875   347899999999999988875 99999999863

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.4e-27  Score=237.39  Aligned_cols=247  Identities=12%  Similarity=0.104  Sum_probs=193.2

Q ss_pred             cCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC--CCcEEEEEe-ecCceeEEEEcCC--eEEEE---EcCeE
Q 015198           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKI  154 (411)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~--~~~~~~~~~-~~~~i~~~~~~~~--~~~~~---~dg~i  154 (411)
                      +.+|...+.++.|++++..+++++.|     |.|++||+.  +++.+..+. |...|.+++|+++  +.+++   .||.|
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence            45788899999999999999999888     999999987  446666666 8999999999987  77666   69999


Q ss_pred             EEEEcCCce--eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc---ceEEEeccccceeEEEecC---
Q 015198          155 YVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTL---  226 (411)
Q Consensus       155 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~l~~sp---  226 (411)
                      ++||+.+++  .+..+..|...+..++++++.++..+++ |+.||.|++|+....   ....+.+|...|.+++|+|   
T Consensus        80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s-gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (753)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEE-EeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence            999999886  6666677777555555555422667765 668999999998654   4566788999999999999   


Q ss_pred             ----------CCCEEEEEcCCCeEEEEEECCCC----ceEEEEeCCCCCcceEEEEeCCC---CCEEEEEeCCCcEEEEE
Q 015198          227 ----------DGLLLATASTRGTLIRIFNTVDG----TRLQEVRRGVDRAEIYSIALSPN---VQWLAVASDKGTVHIFS  289 (411)
Q Consensus       227 ----------~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~~~~~~v~~l~~spd---g~~l~s~s~dg~I~vwd  289 (411)
                                ++.+|++|+.||. |++||++++    .....+..  |...|.+++|+|+   +++|++++.||.|++||
T Consensus       159 ~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             --------CGGGCCEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             ccccccccCCCCCEEEEEECCCe-EEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                      5899999999999 999999887    44555666  8889999999999   89999999999999999


Q ss_pred             ccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEcc
Q 015198          290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS  369 (411)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (411)
                      +.+++........                                                   ......+.+..++|++
T Consensus       236 ~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~v~~l~~sp  264 (753)
T 3jro_A          236 QDNEQGPWKKTLL---------------------------------------------------KEEKFPDVLWRASWSL  264 (753)
T ss_dssp             ESSSSSCCBCCBS---------------------------------------------------SSSCCSSCCCCEEECT
T ss_pred             CCCCCCcceeEEe---------------------------------------------------ccCCCCCceEEEEEcC
Confidence            9987532100000                                                   0000113445678999


Q ss_pred             C-CEEEEEEeCCcEEEEEEec
Q 015198          370 Q-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       370 ~-~~~~~~~~dg~~~~~~~~~  389 (411)
                      + ..|++++.||.|++|++..
T Consensus       265 dg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          265 SGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             TTCCEEEECSSSCEECCBCCS
T ss_pred             CCCEEEEEcCCCEEEEEecCC
Confidence            8 6788888899999999884

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.2e-25  Score=203.01  Aligned_cols=192  Identities=18%  Similarity=0.211  Sum_probs=149.4

Q ss_pred             EEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcC--------
Q 015198           91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFV--------  160 (411)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~--------  160 (411)
                      ....+..++..+++++.|     +.|++||+.+++.+..+. ...|.++.++|+  ++.  .|+.|++|+..        
T Consensus        40 ~~~~~~~d~~~l~sg~~D-----g~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~  111 (343)
T 3lrv_A           40 LNKSMYYDKWVCMCRCED-----GALHFTQLKDSKTITTIT-TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDS  111 (343)
T ss_dssp             ECSSSSEEEEEEEEEEET-----TEEEEEEESSSSCEEEEE-EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEET
T ss_pred             hhhhhcCCCCEEEEECCC-----CcEEEEECCCCcEEEEEe-cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeec
Confidence            334455678889999988     999999999999888877 456777788888  333  68888888654        


Q ss_pred             -CceeeEEEe-ccCCCcceEEEccCC--CceEEEEecCCCCeEEEEEcCCcce-EEE-eccccceeEEEecCCCCEEEEE
Q 015198          161 -DLKLLHQIE-TLANLRGLCCLSHHS--STSVLACPGLQRGQVRIEHFGLNMI-KLI-NAHDSHIACFTLTLDGLLLATA  234 (411)
Q Consensus       161 -~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~l~~~g~~dg~i~i~~~~~~~~-~~~-~~~~~~i~~l~~sp~g~~l~s~  234 (411)
                       +++.+..+. .|..  .+.++.+++  ++.++++ |+.||.|++|+...... ... ..|...|.+++|+|+|.+|++|
T Consensus       112 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s-~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg  188 (343)
T 3lrv_A          112 KTNKVLREIEVDSAN--EIIYMYGHNEVNTEYFIW-ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY  188 (343)
T ss_dssp             TTCCEEEEEECCCSS--CEEEEECCC---CCEEEE-EETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred             CCcceeEEeecCCCC--CEEEEEcCCCCCCCEEEE-EeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence             555455554 3333  456666666  7778775 56899999999876544 333 2456689999999999999999


Q ss_pred             cCCCeEEEEEECCCCceE-EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          235 STRGTLIRIFNTVDGTRL-QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       235 s~dg~~I~vwd~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +.|+. |++||+++++.+ ..+... |...|.+++|+|++.+|++++ |+.|++||+++++..
T Consensus       189 ~~dg~-i~iwd~~~~~~~~~~~~~~-h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~  248 (343)
T 3lrv_A          189 SPDGI-LDVYNLSSPDQASSRFPVD-EEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT  248 (343)
T ss_dssp             CTTSC-EEEEESSCTTSCCEECCCC-TTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC
T ss_pred             cCCCE-EEEEECCCCCCCccEEecc-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc
Confidence            99999 999999999877 666652 678999999999999999999 459999999988654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=2.8e-24  Score=195.29  Aligned_cols=229  Identities=13%  Similarity=0.180  Sum_probs=174.6

Q ss_pred             EEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceee
Q 015198           92 EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL  165 (411)
Q Consensus        92 ~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~  165 (411)
                      .+.|++++. |+.+. |     ++|+|||+.++++++.+.   |...|.+++|+|++.+++   .|+.|++||+++++.+
T Consensus        30 ~l~WS~~~~-lAvg~-D-----~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           30 LVDWSSGNV-LAVAL-D-----NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CEEECTTSE-EEEEE-T-----TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEECCCCE-EEEEe-C-----CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence            467888874 44443 4     999999999999998886   567899999999999888   6999999999999999


Q ss_pred             EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEE
Q 015198          166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI  243 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (411)
                      ..+..|..  .+.++++.+  ..++ +|+.++.+++|....  ..+..+.+|...+..+.+++++++|++++.|+. |++
T Consensus       103 ~~~~~h~~--~~~~~~~~~--~~l~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~i  176 (318)
T 4ggc_A          103 RNMTSHSA--RVGSLSWNS--YILS-SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL-VNV  176 (318)
T ss_dssp             EEEECCSS--CEEEEEEET--TEEE-EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEE
T ss_pred             EEecCccc--eEEEeecCC--CEEE-EEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc-eeE
Confidence            99988876  445555554  3455 467899999977654  456677899999999999999999999999999 999


Q ss_pred             EECCCCceE----EEEeC------------------------------------------CCCCcceEEEEeCCCCCEEE
Q 015198          244 FNTVDGTRL----QEVRR------------------------------------------GVDRAEIYSIALSPNVQWLA  277 (411)
Q Consensus       244 wd~~~~~~~----~~~~~------------------------------------------~~~~~~v~~l~~spdg~~l~  277 (411)
                      ||+++++..    .....                                          ..+...+..+.|++++..++
T Consensus       177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  256 (318)
T 4ggc_A          177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELI  256 (318)
T ss_dssp             EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceE
Confidence            998764311    11111                                          00223456677777777766


Q ss_pred             EEe--CCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEE
Q 015198          278 VAS--DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF  355 (411)
Q Consensus       278 s~s--~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (411)
                      +++  .|+.|+|||+++++...                                                        ++
T Consensus       257 ~~sg~~d~~i~iwd~~~~~~~~--------------------------------------------------------~l  280 (318)
T 4ggc_A          257 SGHGFAQNQLVIWKYPTMAKVA--------------------------------------------------------EL  280 (318)
T ss_dssp             EEECTTTCCEEEEETTTCCEEE--------------------------------------------------------EE
T ss_pred             EEEEcCCCEEEEEECCCCcEEE--------------------------------------------------------EE
Confidence            554  67888888887776543                                                        33


Q ss_pred             EeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          356 HIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                      +-+.+.+..++|+++ ..|++++.||.|++|++.+
T Consensus       281 ~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          281 KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            334456778899998 6788899999999998865

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.1e-25  Score=212.24  Aligned_cols=241  Identities=8%  Similarity=0.007  Sum_probs=186.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEE-EEEe-CCcEEEEecC--CCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           40 SDVDEIELISVSWNQDYGCF-AAGT-SCGFRIYNCE--PFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~l-a~g~-dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      ..+|.+.|++++|+|++++| ++|+ |+.|+||++.  +.+.......+.+...+.++.|+|++..+++++.+     +.
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~-----g~  172 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF-----GD  172 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC-----Cc
Confidence            35788899999999999996 7888 9999999998  55444333223556778899999999888888887     99


Q ss_pred             EEEEECCCCcEEE----EEe-ecCceeEEEEcCC---eEEEE---EcCeEEEEEcCCceeeEEE-eccCCCcceEEEccC
Q 015198          116 VIIWDDHQSRCIG----EFA-FRSDVRSVKLSRD---RIVVV---LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHH  183 (411)
Q Consensus       116 i~vwd~~~~~~~~----~~~-~~~~i~~~~~~~~---~~~~~---~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~  183 (411)
                      |++|++.+++...    .+. |...|.+++|+|+   +.+++   .|+.|++||+.+++.+..+ ..|...+..++++  
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s--  250 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--  250 (450)
T ss_dssp             EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC--
T ss_pred             EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC--
Confidence            9999988876543    444 8899999999999   87777   6899999999998888774 4676655555544  


Q ss_pred             CCceEEEEecCCCCeEEEEEcCC-cceEEEec-------------------------cccceeEEEecCCCCEEEEEc-C
Q 015198          184 SSTSVLACPGLQRGQVRIEHFGL-NMIKLINA-------------------------HDSHIACFTLTLDGLLLATAS-T  236 (411)
Q Consensus       184 ~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~-------------------------~~~~i~~l~~sp~g~~l~s~s-~  236 (411)
                       ++.+|++ |+.|+.|++|+... +.+..+..                         ....|..++|+|++++|++++ .
T Consensus       251 -d~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~  328 (450)
T 2vdu_B          251 -KDYLLLS-AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA  328 (450)
T ss_dssp             -STTEEEE-EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred             -CCCEEEE-EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence             6677775 56899999999764 44555553                         235688999999999999998 8


Q ss_pred             CCeEEEEEEC--CCC---ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeC------CCcEEEEEcccc
Q 015198          237 RGTLIRIFNT--VDG---TRLQEVRRGVDRAEIYSIALSPNVQWLAVASD------KGTVHIFSLRVR  293 (411)
Q Consensus       237 dg~~I~vwd~--~~~---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~------dg~I~vwd~~~~  293 (411)
                      ++. |++||+  .++   +.+..+..  + ..|.+++|+|++.++++++.      +..|.+|.++..
T Consensus       329 d~~-i~iw~~~~~~~~~l~~~~~~~~--~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          329 TKC-IIILEMSEKQKGDLALKQIITF--P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             CSE-EEEEEECSSSTTCEEEEEEEEC--S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             CCe-EEEEEeccCCCCceeeccEecc--C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence            898 999999  565   56667776  4 68999999996544444343      456899988654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.6e-25  Score=212.91  Aligned_cols=224  Identities=8%  Similarity=-0.015  Sum_probs=176.2

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ...+|...|++++|+|+|      .++.+.+|+.+.   .....+ .+...+.++.|+|++..+++++.|     |.|++
T Consensus        47 ~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~---~~~~~~-~~~~~V~~vawSPdG~~LAs~s~d-----g~V~i  111 (588)
T 2j04_A           47 DINCNSKNLFHVKEFPLE------FENKLDFELAQQ---NGLLNS-QPVCYPRVCKPSPIDDWMAVLSNN-----GNVSV  111 (588)
T ss_dssp             CCSSBGGGTEEEEEECCC------CCCTTTTSCCCS---SCSSTT-SCSCCEEEEEECSSSSCEEEEETT-----SCEEE
T ss_pred             eecCCCccEEEEEECCCC------CcceEEEEeCCC---ceEeec-CCCCcEEEEEECCCCCEEEEEeCC-----CcEEE
Confidence            347899999999999999      456555555432   222223 447789999999999999999988     99999


Q ss_pred             EECCCCcEEEEEeecC-----ceeEEEEcCCeEEEE---EcCeEEEEEcCCcee-------eEEEe----ccCCCcceEE
Q 015198          119 WDDHQSRCIGEFAFRS-----DVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL-------LHQIE----TLANLRGLCC  179 (411)
Q Consensus       119 wd~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~-------~~~~~----~~~~~~~~~~  179 (411)
                      ||...  ++..+.|..     .+.+++|+|||++++   .||+|++||+.+++.       +..+.    +|..  .+.+
T Consensus       112 wd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~--~V~s  187 (588)
T 2j04_A          112 FKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD--WVTH  187 (588)
T ss_dssp             EETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC--CEEE
T ss_pred             EeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc--cEEE
Confidence            99544  555555443     499999999999999   699999999988753       56663    3334  5666


Q ss_pred             EccCCCceEEEEecCCCCeEEEEEcCCcce----EEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE
Q 015198          180 LSHHSSTSVLACPGLQRGQVRIEHFGLNMI----KLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (411)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~----~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (411)
                      ++++|++  +++ ++.|+.|++|+..+...    ..+ .+|...|.+++|+  |+.||+++ ++. |++||+.+++....
T Consensus       188 VawSPdg--Laa-ss~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~~~~~~  260 (588)
T 2j04_A          188 IVWYEDV--LVA-ALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNYSISSL  260 (588)
T ss_dssp             EEEETTE--EEE-EETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTTEEEEE
T ss_pred             EEEcCCc--EEE-EeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCCeEEEE
Confidence            7777777  444 44799999999877653    346 4788999999999  68999988 688 99999987776433


Q ss_pred             EeCCCCCcceEEEEe--CCCCCEEEEEeCCCcEEEEEcc
Q 015198          255 VRRGVDRAEIYSIAL--SPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       255 ~~~~~~~~~v~~l~~--spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      ..+  |.+.|..++|  +||+..|+++.+||+ ++|.++
T Consensus       261 ~~g--h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          261 KTG--SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             ECS--CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             EcC--CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            334  8889999999  999999999999999 999987

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=1.6e-23  Score=187.49  Aligned_cols=234  Identities=12%  Similarity=0.139  Sum_probs=162.9

Q ss_pred             EEEEEeccCC---eEEEEecCCCCCCCCCeEEEEECCCC---cEEEEEe-ecC-------------------------ce
Q 015198           89 RIVEMLFRCN---ILALVGAGDNSQYPPTKVIIWDDHQS---RCIGEFA-FRS-------------------------DV  136 (411)
Q Consensus        89 ~~~~~~~~~~---~~~l~s~~~d~~~~d~~i~vwd~~~~---~~~~~~~-~~~-------------------------~i  136 (411)
                      .+..+.|-..   ...++++++      ..|++|+..++   +.++++. +..                         .|
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~------~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v  114 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE------DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREI  114 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES------SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEE
T ss_pred             EEeeeeeccCCCCccEEEEecc------ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccce
Confidence            3444545433   346677666      89999998888   6677666 332                         56


Q ss_pred             eEEEEcCC----eEEEEE-----------------------cCeEEEEEc-CCceeeEEEeccCCCcceEEEcc-CCCce
Q 015198          137 RSVKLSRD----RIVVVL-----------------------EHKIYVYSF-VDLKLLHQIETLANLRGLCCLSH-HSSTS  187 (411)
Q Consensus       137 ~~~~~~~~----~~~~~~-----------------------dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  187 (411)
                      .+++++|+    ++.++.                       |+.|++|++ .+++.+..+..|...+.+++|++ .+++.
T Consensus       115 ~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~  194 (356)
T 2w18_A          115 RALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE  194 (356)
T ss_dssp             EEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT
T ss_pred             EEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc
Confidence            67777777    555551                       677778887 44777777777777777788887 55666


Q ss_pred             EEEEecCCCCeEEEEEcC-CcceEEEecccc---ceeEEEecCCCCEE------------EEEcCCCeEEEEEECCCCce
Q 015198          188 VLACPGLQRGQVRIEHFG-LNMIKLINAHDS---HIACFTLTLDGLLL------------ATASTRGTLIRIFNTVDGTR  251 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~---~i~~l~~sp~g~~l------------~s~s~dg~~I~vwd~~~~~~  251 (411)
                      .|++ |+.|++|+||+.. ++.++.+.+|..   .+.+++|+|+|+++            ++|+.|++ |++||..+++.
T Consensus       195 ~LaS-gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~tgk~  272 (356)
T 2w18_A          195 ALLG-TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPKTTLS  272 (356)
T ss_dssp             EEEE-EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETTTTEE
T ss_pred             eEEE-ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECCCCEE
Confidence            7765 6799999999987 567888886543   57778999999876            56788899 99999999998


Q ss_pred             EEEEe---CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCC
Q 015198          252 LQEVR---RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTG  328 (411)
Q Consensus       252 ~~~~~---~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (411)
                      +..+.   ...|...+.+..++  +.++++++.|++|+|||+.+++...++..|.                         
T Consensus       273 l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~-------------------------  325 (356)
T 2w18_A          273 VGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVS-------------------------  325 (356)
T ss_dssp             EEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--------------------------
T ss_pred             EEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCC-------------------------
Confidence            77653   11144445444444  7899999999999999999998765333331                         


Q ss_pred             CCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEE
Q 015198          329 ANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (411)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~  387 (411)
                                                    ......++|+|+ ..|++++.||.|++|++
T Consensus       326 ------------------------------~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          326 ------------------------------DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -------------------------------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             ------------------------------CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence                                          123345799998 66888888999999986

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.92  E-value=3.4e-23  Score=191.81  Aligned_cols=242  Identities=12%  Similarity=0.075  Sum_probs=172.0

Q ss_pred             EEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEE
Q 015198           69 IYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVV  148 (411)
Q Consensus        69 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~  148 (411)
                      ||++.+...+.  .+..|...+.++.|++++.++++++.      ..+++||+.+++.+....+. .+..+.+.+++..+
T Consensus         3 i~s~~~~~~~~--~~~~h~~~V~~v~fs~dg~~la~g~~------~~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   73 (355)
T 3vu4_A            3 LGSMITRNPIV--PENHVSNPVTDYEFNQDQSCLILSTL------KSFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYV   73 (355)
T ss_dssp             ------------------CCCCCEEEECTTSSEEEEECS------SEEEEEEETTEEEEEEEECS-CCCEEEECTTSSEE
T ss_pred             cccccccCCcc--ccccCCCceEEEEECCCCCEEEEEcC------CEEEEEecCCcceeeeeecC-CeEEEEEcCCCCEE
Confidence            45555433222  23367788999999999999999887      45789998887766655443 47777877766555


Q ss_pred             E----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc--ceEEEeccccceeEE
Q 015198          149 V----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIKLINAHDSHIACF  222 (411)
Q Consensus       149 ~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~~~~~~~~~~i~~l  222 (411)
                      +    .|+.|++||+.+++.+..+..+ .  .+.++.++++.  ++++  .++.|++|+....  .+..+..   +...+
T Consensus        74 ~~~~~~d~~v~iWd~~~~~~~~~~~~~-~--~v~~v~~~~~~--~~~~--~~~~i~i~d~~~~~~~~~~~~~---~~~~~  143 (355)
T 3vu4_A           74 AFVTGVKEVVHIWDDVKKQDVSRIKVD-A--PVKDLFLSREF--IVVS--YGDVISVFKFGNPWKRITDDIR---FGGVC  143 (355)
T ss_dssp             EEECSSTTEEEEEETTTTEEEEEEECS-S--CEEEEEECSSE--EEEE--ETTEEEEEESSTTCCBSSCCEE---EEEEE
T ss_pred             EEEECCccEEEEEECCCCcEEEEEECC-C--ceEEEEEcCCE--EEEE--EcCEEEEEECCCCceeeEEecc---CCceE
Confidence            3    5789999999999999888743 3  45666666654  3332  4789999987754  4444443   44456


Q ss_pred             EecCCCCEEEE--EcCCCeEEEEEECCCCc----------------eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCc
Q 015198          223 TLTLDGLLLAT--ASTRGTLIRIFNTVDGT----------------RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT  284 (411)
Q Consensus       223 ~~sp~g~~l~s--~s~dg~~I~vwd~~~~~----------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  284 (411)
                      ++++  .+++.  |+.+|. |++||+.+++                .+..+.+  |...|.+++|+|+|++|++++.|++
T Consensus       144 ~~s~--~~la~~sg~~~g~-v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~--h~~~v~~~~~s~~g~~l~s~s~d~~  218 (355)
T 3vu4_A          144 EFSN--GLLVYSNEFNLGQ-IHITKLQSSGSATTQDQGVQQKAILGKGVLIKA--HTNPIKMVRLNRKSDMVATCSQDGT  218 (355)
T ss_dssp             EEET--TEEEEEESSCTTC-EEEEECCC------------------CCEEECC--CSSCEEEEEECTTSSEEEEEETTCS
T ss_pred             EEEc--cEEEEeCCCcCcE-EEEEECCCCCccccccccccccccCcccEEEEc--cCCceEEEEECCCCCEEEEEeCCCC
Confidence            6677  56666  588999 9999998865                2567777  8899999999999999999999999


Q ss_pred             -EEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEe--CCCc
Q 015198          285 -VHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHI--PEVT  361 (411)
Q Consensus       285 -I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  361 (411)
                       |+|||+++++...                                                        ++..  +...
T Consensus       219 ~v~iwd~~~~~~~~--------------------------------------------------------~~~~g~h~~~  242 (355)
T 3vu4_A          219 IIRVFKTEDGVLVR--------------------------------------------------------EFRRGLDRAD  242 (355)
T ss_dssp             EEEEEETTTCCEEE--------------------------------------------------------EEECTTCCSC
T ss_pred             EEEEEECCCCcEEE--------------------------------------------------------EEEcCCCCCc
Confidence             9999999887542                                                        3331  3356


Q ss_pred             eEEEEEccC-CEEEEEEeCCcEEEEEEecC
Q 015198          362 HFIAAFGSQ-NTVVIVSMDGSFYRCSFDPV  390 (411)
Q Consensus       362 ~~~~~~~~~-~~~~~~~~dg~~~~~~~~~~  390 (411)
                      +..++|+++ ..|++++.||.+++|++...
T Consensus       243 v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            778999998 77888888999999999764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=2e-23  Score=197.45  Aligned_cols=245  Identities=13%  Similarity=0.086  Sum_probs=174.8

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEe-----CC----cEEEEec--CCCcceEEeecCCCCEEEEEEecc--------------
Q 015198           43 DEIELISVSWNQDYG-CFAAGT-----SC----GFRIYNC--EPFKETFRRDLKSGGFRIVEMLFR--------------   96 (411)
Q Consensus        43 h~~~V~~l~~s~~g~-~la~g~-----dg----~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~--------------   96 (411)
                      +...|....|.+.|. ++++|+     +|    .|+|||+  .+.+.+....+..+...+..+.+.              
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            345788899998875 555665     46    8999999  776655444443444433333333              


Q ss_pred             --CCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---Ec---CeEEEEEcCCceeeEEE
Q 015198           97 --CNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE---HKIYVYSFVDLKLLHQI  168 (411)
Q Consensus        97 --~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d---g~i~iwd~~~~~~~~~~  168 (411)
                        ....++++.... ....+.|++||+..+.......|...+.+++|+|+++.++   .+   ..|++||+.+++.. .+
T Consensus       141 ~~~~~l~~~s~~~~-~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l  218 (415)
T 2hqs_A          141 AFRTRIAYVVQTNG-GQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV  218 (415)
T ss_dssp             CTTCEEEEEEECSS-SSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred             cCCCEEEEEEecCC-CCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence              222333333211 0011699999987555444444889999999999998887   34   49999999988775 44


Q ss_pred             eccCCCcceEEEccCCCceEEEEecCCCCe--EEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC-C--eEEEE
Q 015198          169 ETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-G--TLIRI  243 (411)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g--~~I~v  243 (411)
                      ..+..  .+.++.++|++..|+++++.++.  |++|+........+..|...+.+++|+|||++|++++.+ +  . |++
T Consensus       219 ~~~~~--~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~-i~~  295 (415)
T 2hqs_A          219 ASFPR--HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ-VYK  295 (415)
T ss_dssp             ECCSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE-EEE
T ss_pred             ecCCC--cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE-EEE
Confidence            44444  45667777788888866666554  778888777777888888999999999999988887764 4  5 888


Q ss_pred             EECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC---CcEEEEEcccccc
Q 015198          244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLRVRVV  295 (411)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~I~vwd~~~~~~  295 (411)
                      ||+.+++.. .+..  +...+.+++|+|||++|++++.+   ..|++||+.+++.
T Consensus       296 ~d~~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          296 VNINGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             EETTSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             EECCCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence            899887743 3433  55688999999999999988764   5799999998764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=1.2e-23  Score=197.52  Aligned_cols=218  Identities=13%  Similarity=0.046  Sum_probs=147.4

Q ss_pred             ccCCCCCCeEEEEEcC--------CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCe-EEEEecCCC
Q 015198           39 FSDVDEIELISVSWNQ--------DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDN  108 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~--------~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d  108 (411)
                      .+.+|.+.|++|+|+|        |+++||+|+ |++|+|||+.+........  .+...+.++.|+|++ ..+++++.|
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~d  208 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY--PLSSPGISVQFRPSNPNQLIVGERN  208 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE--ECSSCEEEEEEETTEEEEEEEEETT
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec--CCCCCcEEEEECCCCCceEEecCCC
Confidence            4679999999999998        889999999 9999999998755544432  677788899999987 578888888


Q ss_pred             CCCCCCeEEEEECCCCcEEEEEe--------------------------ecCceeEEEEc-CCeEEEE---EcCeEEEEE
Q 015198          109 SQYPPTKVIIWDDHQSRCIGEFA--------------------------FRSDVRSVKLS-RDRIVVV---LEHKIYVYS  158 (411)
Q Consensus       109 ~~~~d~~i~vwd~~~~~~~~~~~--------------------------~~~~i~~~~~~-~~~~~~~---~dg~i~iwd  158 (411)
                           +.|++||+.+++......                          |...+.++.|. +++..++   .|+.+++||
T Consensus       209 -----~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd  283 (393)
T 4gq1_A          209 -----GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN  283 (393)
T ss_dssp             -----SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred             -----CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence                 999999998876544332                          34567777775 6777666   688888898


Q ss_pred             cCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecC-CCCEEEEEcCC
Q 015198          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTL-DGLLLATASTR  237 (411)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~d  237 (411)
                      +..++....+..+...+...  ...++...                       ...+...+..+.+.+ ++.++++|+.|
T Consensus       284 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~sgs~D  338 (393)
T 4gq1_A          284 LFANNDYNEISDSTMKLGPK--NLLPNVQG-----------------------ISLFPSLLGACPHPRYMDYFATAHSQH  338 (393)
T ss_dssp             C---------------------CCSCSEEE-----------------------ECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred             CccCCCCceEeeecCccccE--EEcccccc-----------------------ccccCcceeEEEccCCCCEEEEEECCC
Confidence            87776666555444322222  22222111                       111222223333333 44567788999


Q ss_pred             CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      |. |++||+.+++.+..+..  |..+|.+++|+|||++||+++.+| +.+|++..
T Consensus       339 g~-V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          339 GL-IQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             TE-EEEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred             CE-EEEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence            99 99999999998877777  777999999999999999999887 77777653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=1.4e-21  Score=184.66  Aligned_cols=226  Identities=15%  Similarity=0.094  Sum_probs=170.2

Q ss_pred             CCEEEEEe-C------CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEE
Q 015198           56 YGCFAAGT-S------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG  128 (411)
Q Consensus        56 g~~la~g~-d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~  128 (411)
                      +..++.++ +      +.|++||++... ...  +..+...+..+.|+|++..++.++.+.  .+..|++||+.+++...
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~--l~~~~~~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~~  217 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-QFV--VHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQ  217 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS-CEE--EEEESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC-CEE--EeCCCCcceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEEE
Confidence            55666655 4      689999998533 222  225566788999999998887776540  11499999999998876


Q ss_pred             EEeecCceeEEEEcCCeEEEE--E----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC--eEE
Q 015198          129 EFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVR  200 (411)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~--~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~i~  200 (411)
                      ...+...+.+++|+||++.++  .    +..|++||+.+++. ..+..+..  .+..+.++|++..|++++..++  .|+
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~--~~~~~~~spdg~~l~~~s~~~g~~~i~  294 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRS--NNTEPTWFPDSQNLAFTSDQAGRPQVY  294 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSS--CEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCC--cccceEECCCCCEEEEEECCCCCcEEE
Confidence            555888999999999998666  2    34599999988765 44544444  4566677778888887665566  566


Q ss_pred             EEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEE
Q 015198          201 IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA  277 (411)
Q Consensus       201 i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  277 (411)
                      +|+........+..+...+..++|+|+|++|++++.+   .. |++||+.+++.. .+..  +. .+.+++|+|||++|+
T Consensus       295 ~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~-i~~~d~~~~~~~-~l~~--~~-~~~~~~~spdg~~l~  369 (415)
T 2hqs_A          295 KVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLSS--TF-LDETPSLAPNGTMVI  369 (415)
T ss_dssp             EEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEE-EEEEETTTCCEE-ECCC--SS-SCEEEEECTTSSEEE
T ss_pred             EEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceE-EEEEECCCCCEE-EecC--CC-CcCCeEEcCCCCEEE
Confidence            6777766666667778889999999999999888764   46 999999988774 4443  33 799999999999999


Q ss_pred             EEeCCC---cEEEEEccccc
Q 015198          278 VASDKG---TVHIFSLRVRV  294 (411)
Q Consensus       278 s~s~dg---~I~vwd~~~~~  294 (411)
                      +++.++   .|++||+..+.
T Consensus       370 ~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          370 YSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEEETTEEEEEEEETTSCC
T ss_pred             EEEcCCCccEEEEEECCCCc
Confidence            888877   79999987443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=2.6e-21  Score=188.72  Aligned_cols=232  Identities=9%  Similarity=0.043  Sum_probs=176.4

Q ss_pred             EEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC--CCCcEE
Q 015198           51 SWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD--HQSRCI  127 (411)
Q Consensus        51 ~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~--~~~~~~  127 (411)
                      +|+|++.+++++. ++.|.+||..+.+.+..... ++.  +..+.++|++.++++++.+     +.|.+||+  .+++.+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~--~~~v~~spdg~~l~v~~~d-----~~V~v~D~~~~t~~~~  215 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYA--VHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTKV  215 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STT--EEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec-Ccc--cceEEECCCCCEEEEECCC-----CeEEEEECcCCCCcEE
Confidence            3789998888888 99999999998665544432 233  6678899999988888887     99999999  889999


Q ss_pred             EEEeecCceeEEEEcC----CeEEEE----EcCeEEEEEcCCceeeEEEeccCC---------CcceEEEccCCCceEEE
Q 015198          128 GEFAFRSDVRSVKLSR----DRIVVV----LEHKIYVYSFVDLKLLHQIETLAN---------LRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       128 ~~~~~~~~i~~~~~~~----~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~  190 (411)
                      ..+.+...+..++|+|    ++++++    .++.|.+||..+++++..+..+..         ...+..+.+++++..++
T Consensus       216 ~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          216 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             EEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence            9998878889999999    988776    589999999999999988865321         11345566666555666


Q ss_pred             EecCCCCeEEEEEcCCc-ceE--EEeccccceeEEEecCCCCEEEEE-cCCCeEEEEEECCCCceEEEEeCCC--CCcce
Q 015198          191 CPGLQRGQVRIEHFGLN-MIK--LINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEVRRGV--DRAEI  264 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~-~~~--~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~~~~~--~~~~v  264 (411)
                      ++...++.|.+|+.... .+.  .+ .+...+..++|+|+|++|+++ ..++. |.+||+.+++++..+..+.  |.+..
T Consensus       296 vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i~~g~~ph~g~g  373 (543)
T 1nir_A          296 VNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPGRG  373 (543)
T ss_dssp             EEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSBCCTTC
T ss_pred             EEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEeeccCCCCCCCCC
Confidence            66778999999887542 222  33 356678899999999977655 45788 9999999999988887532  33333


Q ss_pred             EEEEeCCC-CCEEEEEe-CCCcEEEEEcccc
Q 015198          265 YSIALSPN-VQWLAVAS-DKGTVHIFSLRVR  293 (411)
Q Consensus       265 ~~l~~spd-g~~l~s~s-~dg~I~vwd~~~~  293 (411)
                      ..+ ++|+ +.+++++. .|++|.|||+++.
T Consensus       374 ~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~  403 (543)
T 1nir_A          374 ANF-VHPKYGPVWSTSHLGDGSISLIGTDPK  403 (543)
T ss_dssp             EEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             ccc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence            333 4677 66666665 5899999999884

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=3.1e-22  Score=203.35  Aligned_cols=238  Identities=11%  Similarity=0.003  Sum_probs=175.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CC-----cEEEEecCCCcceEEeecCCCC----------------------EEEEEEe
Q 015198           44 EIELISVSWNQDYGCFAAGT--SC-----GFRIYNCEPFKETFRRDLKSGG----------------------FRIVEML   94 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~--dg-----~i~iw~~~~~~~~~~~~~~~~~----------------------~~~~~~~   94 (411)
                      ...|.+++|+|||++|++++  |+     .|++||+++.+.......+.+.                      ..+..+.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            56799999999999999887  66     8999999876544333322222                      3467788


Q ss_pred             ccCCeEEEEecCCCCCCCCCeEEEEECCCC---cEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEe
Q 015198           95 FRCNILALVGAGDNSQYPPTKVIIWDDHQS---RCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIE  169 (411)
Q Consensus        95 ~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~  169 (411)
                      |+|++..++.++.      +.|++||+.++   +......+...+..++|+|||+.++  .++.|++||+.+++......
T Consensus       116 ~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          116 WSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             ECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCC
T ss_pred             ECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEecc
Confidence            9999988877765      89999999888   5444334778899999999999887  78899999999887664443


Q ss_pred             ccCCCc--------------ceEEEccCCCceEEEEecCCCC---------------------------------eEEEE
Q 015198          170 TLANLR--------------GLCCLSHHSSTSVLACPGLQRG---------------------------------QVRIE  202 (411)
Q Consensus       170 ~~~~~~--------------~~~~~~~~~~~~~l~~~g~~dg---------------------------------~i~i~  202 (411)
                      .+...+              ....+.++|+++.|+++. .|+                                 .|++|
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~-~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR-IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE-EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEE-EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            332211              023456667777777753 332                                 56667


Q ss_pred             EcCC-cceEEEe---ccccceeEEEecCCCCEEEEEcC-----CCeEEEEEECCCCceEEEEeCCCCCc---ceEEEEeC
Q 015198          203 HFGL-NMIKLIN---AHDSHIACFTLTLDGLLLATAST-----RGTLIRIFNTVDGTRLQEVRRGVDRA---EIYSIALS  270 (411)
Q Consensus       203 ~~~~-~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~-----dg~~I~vwd~~~~~~~~~~~~~~~~~---~v~~l~~s  270 (411)
                      +... .....+.   .|...+..++| |||++|++++.     +.. |++||+.+++....+..+ ...   .+..++|+
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHET-SPTWVPLHNSLRFL  345 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCSCCEEC
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcC-CCCcCCcCCceEEC
Confidence            7665 5544443   47788999999 99999987653     456 999999999887666542 111   34688999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcc
Q 015198          271 PNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       271 pdg~~l~s~s~dg~I~vwd~~  291 (411)
                      |||+++++++.||.++||.++
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEEC
T ss_pred             CCCeEEEEecCCCccEEEEEc
Confidence            999999999999988888876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=1.6e-20  Score=171.61  Aligned_cols=231  Identities=13%  Similarity=0.075  Sum_probs=165.0

Q ss_pred             EEEcCCCCEEE-EEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE-EEEecCCCCCCCCCeEEEEECCCCcE
Q 015198           50 VSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRC  126 (411)
Q Consensus        50 l~~s~~g~~la-~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~d~~i~vwd~~~~~~  126 (411)
                      ..|.+++.+++ ++. ++.|.+||.++.+.......  +.... .+.+++++. +++++..+     +.|.+||+.+++.
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~-~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~   74 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL--GYDFV-DTAITSDCSNVVVTSDFC-----QTLVQIETQLEPP   74 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC--CCCEE-EEEECSSSCEEEEEESTT-----CEEEEEECSSSSC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc--cCCcc-eEEEcCCCCEEEEEeCCC-----CeEEEEECCCCce
Confidence            45666666644 555 99999999998666555443  34444 888999886 44554445     8999999999987


Q ss_pred             -EEEEeecCceeE-EEEcCCeEEEE--E-c-C--eEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe
Q 015198          127 -IGEFAFRSDVRS-VKLSRDRIVVV--L-E-H--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (411)
Q Consensus       127 -~~~~~~~~~i~~-~~~~~~~~~~~--~-d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (411)
                       ...+........ ++|+|++.+++  . + +  .|++||+.+++.+..+..+..   ...+.+++++.++++++..++.
T Consensus        75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~~  151 (331)
T 3u4y_A           75 KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD---AVGIAISPNGNGLILIDRSSAN  151 (331)
T ss_dssp             EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT---EEEEEECTTSSCEEEEEETTTT
T ss_pred             eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC---ccceEECCCCCEEEEEecCCCc
Confidence             666664444445 99999998776  2 3 3  899999999998888765443   3566667777656655556677


Q ss_pred             -EEEEEcCCcc-e----EEEeccccceeEEEecCCCCEEEE-EcCCCeEEEEEECCCCce---EEEEeCCCCCcceEEEE
Q 015198          199 -VRIEHFGLNM-I----KLINAHDSHIACFTLTLDGLLLAT-ASTRGTLIRIFNTVDGTR---LQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       199 -i~i~~~~~~~-~----~~~~~~~~~i~~l~~sp~g~~l~s-~s~dg~~I~vwd~~~~~~---~~~~~~~~~~~~v~~l~  268 (411)
                       |.+|+..... +    ............++|+|+|++|++ +..++. |++||+.+++.   +..+..   ...+..++
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~---~~~~~~~~  227 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGT---NNLPGTIV  227 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEEC---SSCCCCEE
T ss_pred             eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccC---CCCCceEE
Confidence             9998765321 1    122234456789999999996554 456788 99999999988   777774   34678899


Q ss_pred             eCCCCCEEEEEe-CCCcEEEEEcccccc
Q 015198          269 LSPNVQWLAVAS-DKGTVHIFSLRVRVV  295 (411)
Q Consensus       269 ~spdg~~l~s~s-~dg~I~vwd~~~~~~  295 (411)
                      |+|||++|+++. .++.|.+||+.+++.
T Consensus       228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          228 VSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             ECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             ECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            999999777665 477899999998764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=6.7e-20  Score=167.98  Aligned_cols=273  Identities=10%  Similarity=0.051  Sum_probs=176.2

Q ss_pred             CEEEEE-e-CCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccCCeEEEEec-CCCCCCCCCeEEEEECC--CCcE--EE
Q 015198           57 GCFAAG-T-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGA-GDNSQYPPTKVIIWDDH--QSRC--IG  128 (411)
Q Consensus        57 ~~la~g-~-dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~~~d~~i~vwd~~--~~~~--~~  128 (411)
                      ++++++ . ++.|++|+++.... .....+ .+...+..+.|++++..++.+ ..+     +.|.+|++.  +++.  +.
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~   78 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFAA   78 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCC-----CeEEEEEecCCCCceeecc
Confidence            345544 5 99999999963222 122222 344456678888888644444 333     899999987  5553  34


Q ss_pred             EEeecCceeEEEEcCCeEEEE----EcCeEEEEEcC---CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE
Q 015198          129 EFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFV---DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI  201 (411)
Q Consensus       129 ~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i  201 (411)
                      .+.....+..++|+|++..++    .++.|++||+.   ..+.+..+..+.   ....+.+++++..+++++..++.|.+
T Consensus        79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~  155 (343)
T 1ri6_A           79 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD---GCHSANISPDNRTLWVPALKQDRICL  155 (343)
T ss_dssp             EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT---TBCCCEECTTSSEEEEEEGGGTEEEE
T ss_pred             ccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC---CceEEEECCCCCEEEEecCCCCEEEE
Confidence            455455889999999998665    37899999994   334444444333   23445566667777665557899999


Q ss_pred             EEcCC-cceE-----EEec-cccceeEEEecCCCCEEEEE-cCCCeEEEEEECCC--Cce--EEEEeCC----CCCcceE
Q 015198          202 EHFGL-NMIK-----LINA-HDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVD--GTR--LQEVRRG----VDRAEIY  265 (411)
Q Consensus       202 ~~~~~-~~~~-----~~~~-~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~--~~~--~~~~~~~----~~~~~v~  265 (411)
                      |+... ..+.     .+.. ....+..++|+|+|++|+++ ..++. |++||+..  ++.  ...+...    .....+.
T Consensus       156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  234 (343)
T 1ri6_A          156 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAA  234 (343)
T ss_dssp             EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred             EEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence            88765 3332     2232 34478889999999977554 47888 99999953  443  3333311    0123577


Q ss_pred             EEEeCCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCc
Q 015198          266 SIALSPNVQWLAVA-SDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK  344 (411)
Q Consensus       266 ~l~~spdg~~l~s~-s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (411)
                      .++|+|+|++|+++ ..++.|.+|+++......                                               
T Consensus       235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~-----------------------------------------------  267 (343)
T 1ri6_A          235 DIHITPDGRHLYACDRTASLITVFSVSEDGSVL-----------------------------------------------  267 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCCE-----------------------------------------------
T ss_pred             ceEECCCCCEEEEEecCCCEEEEEEEcCCCCce-----------------------------------------------
Confidence            89999999988754 478999999998421100                                               


Q ss_pred             ccccccceEEEEeCCCceEEEEEccC-CEEEEEE-eCCcEEEEEEecCCC
Q 015198          345 YFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVS-MDGSFYRCSFDPVHG  392 (411)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~dg~~~~~~~~~~~~  392 (411)
                           .....+..... ...++|+++ +.|++++ .+|.+.+|.++.+.+
T Consensus       268 -----~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g  311 (343)
T 1ri6_A          268 -----SKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG  311 (343)
T ss_dssp             -----EEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred             -----EEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCc
Confidence                 00112222222 445789998 5577777 479999999997554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.88  E-value=4.6e-20  Score=179.91  Aligned_cols=249  Identities=10%  Similarity=0.053  Sum_probs=189.0

Q ss_pred             CCCCeEEEEEcC----CCCEEEEEe--CCcEEEEecCCCcceEEeecCC---------CCEEEEEEeccCC-eEEEEecC
Q 015198           43 DEIELISVSWNQ----DYGCFAAGT--SCGFRIYNCEPFKETFRRDLKS---------GGFRIVEMLFRCN-ILALVGAG  106 (411)
Q Consensus        43 h~~~V~~l~~s~----~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~l~s~~  106 (411)
                      +...+..++|+|    ||++|++++  ++.|.|||..+.+.+.......         ....+..+.++++ ..++++..
T Consensus       220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            455689999999    999999888  8999999998866554443311         1225677888874 46667777


Q ss_pred             CCCCCCCCeEEEEECCCCcEEE--EEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCC--cceE
Q 015198          107 DNSQYPPTKVIIWDDHQSRCIG--EFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANL--RGLC  178 (411)
Q Consensus       107 ~d~~~~d~~i~vwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~  178 (411)
                      .+     +.|.+||+.+.+.+.  .+.+...+..+.|+|++++++    .+++|.+||+.+++++..+.....+  ....
T Consensus       300 ~~-----g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~  374 (543)
T 1nir_A          300 ET-----GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  374 (543)
T ss_dssp             TT-----TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred             CC-----CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence            66     999999998876544  555677788999999998655    4789999999999999888753221  1233


Q ss_pred             EEccCCC-ceEEEEecCCCCeEEEEEcC--------CcceEEEeccccceeEEEecCCCCEEEEEc-------CCCeEEE
Q 015198          179 CLSHHSS-TSVLACPGLQRGQVRIEHFG--------LNMIKLINAHDSHIACFTLTLDGLLLATAS-------TRGTLIR  242 (411)
Q Consensus       179 ~~~~~~~-~~~l~~~g~~dg~i~i~~~~--------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-------~dg~~I~  242 (411)
                      .+. +++ +.++++....+++|.+|+..        .+.++.+..|...+..++++|+|++|++++       .++. |.
T Consensus       375 ~~~-~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~-v~  452 (543)
T 1nir_A          375 NFV-HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VA  452 (543)
T ss_dssp             EEE-ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC-EE
T ss_pred             ccC-CCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce-EE
Confidence            342 444 55555433368999998875        467889999998889999999999999987       2668 99


Q ss_pred             EEECCCCceE-EEEeC------CCCCcceEEEEeCCCCCEEEEEe-----CCCcEEEEEccccccCCC
Q 015198          243 IFNTVDGTRL-QEVRR------GVDRAEIYSIALSPNVQWLAVAS-----DKGTVHIFSLRVRVVGED  298 (411)
Q Consensus       243 vwd~~~~~~~-~~~~~------~~~~~~v~~l~~spdg~~l~s~s-----~dg~I~vwd~~~~~~~~~  298 (411)
                      |||+.+++.. ..+..      ..+...+..+.|+|+|+.|+++.     .|+.|.|||..+++....
T Consensus       453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~  520 (543)
T 1nir_A          453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV  520 (543)
T ss_dssp             EEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred             EEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence            9999999877 44421      12456899999999999988663     479999999999987653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=1.2e-19  Score=167.09  Aligned_cols=239  Identities=13%  Similarity=0.087  Sum_probs=176.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe--------CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE-EEEecCCCCCCC
Q 015198           42 VDEIELISVSWNQDYGCFAAGT--------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYP  112 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~--------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~  112 (411)
                      .....+..++|+|+++++++++        ++.|.+||.++.+.......   ......+.+++++. ++++...+    
T Consensus        38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~----  110 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVN----  110 (353)
T ss_dssp             EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTT----
T ss_pred             hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCC----
Confidence            3456788999999999998887        35799999988665544433   12245567777764 55565555    


Q ss_pred             CCeEEEEECCCCcEEEEEeecC----------ceeEEEEcCCeEEEE--E---cCeEEEEEcCCceeeEEEeccCCCcce
Q 015198          113 PTKVIIWDDHQSRCIGEFAFRS----------DVRSVKLSRDRIVVV--L---EHKIYVYSFVDLKLLHQIETLANLRGL  177 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~~~~----------~i~~~~~~~~~~~~~--~---dg~i~iwd~~~~~~~~~~~~~~~~~~~  177 (411)
                       +.|.+||..+++.+..+....          .+.++.|+|++..++  .   ++.|++||+.+++.+..+..+......
T Consensus       111 -~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          111 -SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG  189 (353)
T ss_dssp             -TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred             -CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence             899999999999988887321          268899999987555  2   678999999999998888644332333


Q ss_pred             EEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEec----cccceeEEEecCCCCEEEEEcCC-CeEEEEEECCCCce
Q 015198          178 CCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA----HDSHIACFTLTLDGLLLATASTR-GTLIRIFNTVDGTR  251 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~----~~~~i~~l~~sp~g~~l~s~s~d-g~~I~vwd~~~~~~  251 (411)
                      +.+  ++++..++++ ..++.|.+|+... +....+..    +...+..++|+|+|++|++++.+ +. |.+||+.+++.
T Consensus       190 ~~~--s~dg~~l~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~  265 (353)
T 3vgz_A          190 LAL--DSEGKRLYTT-NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNI  265 (353)
T ss_dssp             CEE--ETTTTEEEEE-CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCE
T ss_pred             EEE--CCCCCEEEEE-cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcE
Confidence            444  4555666664 4688999987654 44445543    45567889999999977766654 77 99999999999


Q ss_pred             EEEEeCCCCCcceEEEEeCCCCCEEEEEe-CCCcEEEEEccccccC
Q 015198          252 LQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRVVG  296 (411)
Q Consensus       252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~~  296 (411)
                      +..+..+  .  ...++|+|+|++|+++. .++.|.+||+.+++..
T Consensus       266 ~~~~~~~--~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~  307 (353)
T 3vgz_A          266 LAKVAAP--E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV  307 (353)
T ss_dssp             EEEEECS--S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEEcC--C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            8888753  2  25689999999766555 6899999999887643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=1.3e-20  Score=172.37  Aligned_cols=238  Identities=10%  Similarity=-0.010  Sum_probs=176.9

Q ss_pred             CeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCC---CCEEEEEEeccCCeEEEEecC------------CC
Q 015198           46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKS---GGFRIVEMLFRCNILALVGAG------------DN  108 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~------------~d  108 (411)
                      .+..++|+|+|++++++.  ++.|.+||+.+.+......+..   +...+..+.+++++..++.+.            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            478899999998776554  7899999998866544443311   012345677888885554442            23


Q ss_pred             CCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       109 ~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                           +.|.+||+.+++.+..+.....+.+++|+|++..++ .++.|++||+.+++.+..+..+..... .  .+++++.
T Consensus       115 -----~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~--~~s~dg~  186 (337)
T 1pby_B          115 -----TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE-T--YAQPDVL  186 (337)
T ss_dssp             -----CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTT-T--BCCCBCC
T ss_pred             -----ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCCC-c--eeCCCcc
Confidence                 899999999999888888777788999999998666 789999999999998877765441111 1  4455555


Q ss_pred             EEEEecCCCCe-----------------------EEEEEcCCcceE--EEeccccceeEEEecCCCCEEEEEcCCCeEEE
Q 015198          188 VLACPGLQRGQ-----------------------VRIEHFGLNMIK--LINAHDSHIACFTLTLDGLLLATASTRGTLIR  242 (411)
Q Consensus       188 ~l~~~g~~dg~-----------------------i~i~~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~  242 (411)
                      .+++++..++.                       |.+|+.....+.  .+..+...+..++|+|+|++|+++  ++. |+
T Consensus       187 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~  263 (337)
T 1pby_B          187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LE  263 (337)
T ss_dssp             CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EE
T ss_pred             EEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EE
Confidence            55554444443                       456666554432  234556678899999999999888  688 99


Q ss_pred             EEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198          243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      +||+.+++.+..+..   ...+.+++|+|||++|++++.++.|++||+.+++...
T Consensus       264 ~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~  315 (337)
T 1pby_B          264 SFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             EEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             EEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence            999999998888774   2357899999999999999999999999999987653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=3.1e-20  Score=170.18  Aligned_cols=240  Identities=13%  Similarity=0.122  Sum_probs=167.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-C-CcEEEEecC--CCcceEEeecCCCCEEEEEEeccCCeEEE-EecCCCCCCCCCe
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-S-CGFRIYNCE--PFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTK  115 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~~  115 (411)
                      ..|...+.+++|+|+|++|++++ + +.|.+|+++  +........+..+. .+..+.|++++..+ +++..+     +.
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~-----~~  107 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNA-----GN  107 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTT-----TE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCC-----Ce
Confidence            34677899999999999998888 4 999999998  33322222232222 66778889988654 444445     89


Q ss_pred             EEEEECC---CCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCC-ceeeE----EEeccCCCcceEEEccC
Q 015198          116 VIIWDDH---QSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLLH----QIETLANLRGLCCLSHH  183 (411)
Q Consensus       116 i~vwd~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~-~~~~~----~~~~~~~~~~~~~~~~~  183 (411)
                      |.+||+.   .++.+..+.....+.+++|+|++..++    .++.|++||+.+ ++...    .+..+.. .....+.++
T Consensus       108 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  186 (343)
T 1ri6_A          108 VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-AGPRHMVFH  186 (343)
T ss_dssp             EEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-CCEEEEEEC
T ss_pred             EEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-CCcceEEEC
Confidence            9999984   334455555566789999999987555    479999999987 65432    2222221 244567777


Q ss_pred             CCceEEEEecCCCCeEEEEEcCC--cc---eEEEecc------ccceeEEEecCCCCEEE-EEcCCCeEEEEEECC--CC
Q 015198          184 SSTSVLACPGLQRGQVRIEHFGL--NM---IKLINAH------DSHIACFTLTLDGLLLA-TASTRGTLIRIFNTV--DG  249 (411)
Q Consensus       184 ~~~~~l~~~g~~dg~i~i~~~~~--~~---~~~~~~~------~~~i~~l~~sp~g~~l~-s~s~dg~~I~vwd~~--~~  249 (411)
                      +++.++++++..++.|.+|+...  ..   ...+...      ...+..++|+|+|++|+ +...++. |++||+.  ++
T Consensus       187 pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~~  265 (343)
T 1ri6_A          187 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGS  265 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCCC
Confidence            78887776676889999998753  22   2222211      23466899999998777 4557888 9999998  33


Q ss_pred             --ceEEEEeCCCCCcceEEEEeCCCCCEEEEEe-CCCcEEEEEcc
Q 015198          250 --TRLQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLR  291 (411)
Q Consensus       250 --~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~  291 (411)
                        +.+..+..  +. .+..++|+|+|++|++++ .++.|.+|+++
T Consensus       266 ~~~~~~~~~~--~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          266 VLSKEGFQPT--ET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             CEEEEEEEEC--SS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ceEEeeeecC--CC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence              34444544  22 388999999999888887 57999999665

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=2.1e-21  Score=196.71  Aligned_cols=240  Identities=10%  Similarity=0.025  Sum_probs=168.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCE---EEEEEeccCCeEEEEecCCCCCC----CCCeEE
Q 015198           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGF---RIVEMLFRCNILALVGAGDNSQY----PPTKVI  117 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s~~~d~~~----~d~~i~  117 (411)
                      ..+.+++|+|||++++++.||.|++||+.+.+......  .+..   .+..+.|+|++..++.+..+...    .++.|.
T Consensus        17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~--~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIE--GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEEC--TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEec--cccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            34778999999998877449999999998865543332  3332   37788999999887776543111    237899


Q ss_pred             EEECCCCcEEEEEe----ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCc----------------
Q 015198          118 IWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLR----------------  175 (411)
Q Consensus       118 vwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~----------------  175 (411)
                      +||+.+++. ..+.    +...+..++|+|||+.++  .++.|++||+.+++.......+...+                
T Consensus        95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            999999876 3333    233488999999998877  78999999999887766555433322                


Q ss_pred             ceEEEccCCCceEEEEecCCC---------------------------------CeEEEEEcCCcc-eEEEecc------
Q 015198          176 GLCCLSHHSSTSVLACPGLQR---------------------------------GQVRIEHFGLNM-IKLINAH------  215 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~d---------------------------------g~i~i~~~~~~~-~~~~~~~------  215 (411)
                      ....+.++|+++.|+++...+                                 ..|++|+..... ...+..+      
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence            125677788888888754221                                 267778876654 3555544      


Q ss_pred             ccceeEEEecCCCCEEEEEcC----CCeEEEEEECCCCceEEEEeCCCCCcce----EEEEeCCCCCEEEE--EeCCC--
Q 015198          216 DSHIACFTLTLDGLLLATAST----RGTLIRIFNTVDGTRLQEVRRGVDRAEI----YSIALSPNVQWLAV--ASDKG--  283 (411)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~----dg~~I~vwd~~~~~~~~~~~~~~~~~~v----~~l~~spdg~~l~s--~s~dg--  283 (411)
                      ...+..++|+|||++|++...    +.. |++||+.+++....+... +...+    ..++|+|||+.|+.  +..++  
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  331 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence            667899999999998876643    245 999999999876655432 22333    37899999997775  44666  


Q ss_pred             ----cEEEEE
Q 015198          284 ----TVHIFS  289 (411)
Q Consensus       284 ----~I~vwd  289 (411)
                          .|++||
T Consensus       332 ~~~~~l~~~d  341 (723)
T 1xfd_A          332 GKFYHITVSS  341 (723)
T ss_dssp             SCEEEEEEEC
T ss_pred             cceeEEEEEe
Confidence                466666

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=8.3e-20  Score=166.94  Aligned_cols=246  Identities=10%  Similarity=0.104  Sum_probs=171.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcc-eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC--eE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT--KV  116 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~--~i  116 (411)
                      .+...+ +++|+|+|++|+++.  ++.|.+||.++.+. .....  .+......+.+++++..++....+    .+  .|
T Consensus        38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~----~~~~~i  110 (331)
T 3u4y_A           38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ--EGQSSMADVDITPDDQFAVTVTGL----NHPFNM  110 (331)
T ss_dssp             CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE--ECSSCCCCEEECTTSSEEEECCCS----SSSCEE
T ss_pred             ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc--cCCCCccceEECCCCCEEEEecCC----CCcccE
Confidence            345556 999999999777665  88999999987654 33222  222222237788888766644432    12  99


Q ss_pred             EEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCe-EEEEEcCCceeeEEE--eccCCCcceEEEccCCCceEE
Q 015198          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHK-IYVYSFVDLKLLHQI--ETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~-i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      .+||+.+++.+..+.......+++|+|+++.++    .++. |.+|++.....+...  ...........+.+++++.++
T Consensus       111 ~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l  190 (331)
T 3u4y_A          111 QSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFA  190 (331)
T ss_dssp             EEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEE
T ss_pred             EEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEE
Confidence            999999999998888777789999999997444    3467 999998754332111  100111235667777788877


Q ss_pred             EEecCCCCeEEEEEcCC-cc---eEEEeccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCce--EEEEeCC--CC
Q 015198          190 ACPGLQRGQVRIEHFGL-NM---IKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTR--LQEVRRG--VD  260 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~-~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~--~~~~~~~--~~  260 (411)
                      ++++..++.|.+|+... +.   +..+.. ...+..++|+|+|++|++++ .++. |.+||+.+++.  +..+...  .+
T Consensus       191 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~  268 (331)
T 3u4y_A          191 FVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVD-VFNFNQLSGTLSFVKSFGHGLLID  268 (331)
T ss_dssp             EEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEE-EEEEETTTTEEEEEEEEECCCCCC
T ss_pred             EEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCE-EEEEECCCCceeeecccccccccC
Confidence            77677789999988764 44   455553 46678999999999776665 4667 99999999877  4444432  11


Q ss_pred             Ccc---eEEEEeCCCCCEEEEEeC-CCcEEEEEccccccC
Q 015198          261 RAE---IYSIALSPNVQWLAVASD-KGTVHIFSLRVRVVG  296 (411)
Q Consensus       261 ~~~---v~~l~~spdg~~l~s~s~-dg~I~vwd~~~~~~~  296 (411)
                      ...   ...++|+|||++|++++. ++.|.+||+..+...
T Consensus       269 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~  308 (331)
T 3u4y_A          269 PRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG  308 (331)
T ss_dssp             CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred             CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence            222   245899999998876655 568999999876643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=1e-20  Score=169.29  Aligned_cols=236  Identities=7%  Similarity=-0.110  Sum_probs=170.9

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCC-CcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ....|...|.+++|+|+|++|+++.++.|.+||+++ .+...... ..+...+..+.|++++..++.+..+.. ....|.
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~  113 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDT-GFATICNNDHGISPDGALYAISDKVEF-GKSAIY  113 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCC-TTCCCBCSCCEECTTSSEEEEEECTTT-SSCEEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecc-ccccccccceEECCCCCEEEEEEeCCC-CcceEE
Confidence            345688899999999999999999999999999987 54432221 122355677889998877776652200 125566


Q ss_pred             EEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEc--CCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSF--VDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      +|+..+++ ...+.....+..++|+|++..++    .++.+++|++  .+++ ...+..+..  .+..+.+++++..|++
T Consensus       114 ~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~s~dg~~l~~  189 (297)
T 2ojh_A          114 LLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEG--RNDGPDYSPDGRWIYF  189 (297)
T ss_dssp             EEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSS--CEEEEEECTTSSEEEE
T ss_pred             EEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCC--ccccceECCCCCEEEE
Confidence            66666655 34455455689999999998665    5888888886  3333 334444443  4556667777888877


Q ss_pred             ecCCCCeEEEEEc--CCcceEEEeccccceeEEEecCCCCEEEEEcCC-----------CeEEEEEECCCCceEEE--Ee
Q 015198          192 PGLQRGQVRIEHF--GLNMIKLINAHDSHIACFTLTLDGLLLATASTR-----------GTLIRIFNTVDGTRLQE--VR  256 (411)
Q Consensus       192 ~g~~dg~i~i~~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-----------g~~I~vwd~~~~~~~~~--~~  256 (411)
                      ++..++.+++|..  .......+..|...+..++|+|+|++|++++.+           +. |++||+.+++....  +.
T Consensus       190 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~~  268 (297)
T 2ojh_A          190 NSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR-VQLMDMDGGNVETLFDLF  268 (297)
T ss_dssp             EECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE-EEEEETTSCSCEEEEEEE
T ss_pred             EecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE-EEEEecCCCCceeeeccC
Confidence            7666888888765  456677777888899999999999999888765           56 99999988876433  33


Q ss_pred             CCCCCcceEEEEeCCCCCEEEEEeCCC
Q 015198          257 RGVDRAEIYSIALSPNVQWLAVASDKG  283 (411)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg  283 (411)
                      .  |...+..++|+|++++|++++.+.
T Consensus       269 ~--~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          269 G--GQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             E--STTTSCSCCBCTTSSEEEEEEECC
T ss_pred             C--CCcccccceECCCCCEEEEEEecc
Confidence            4  666889999999999998887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=1.6e-20  Score=168.08  Aligned_cols=216  Identities=11%  Similarity=0.015  Sum_probs=161.9

Q ss_pred             CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC-CcEEEEEe-e-cCceeEEE
Q 015198           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-SRCIGEFA-F-RSDVRSVK  140 (411)
Q Consensus        64 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~-~~~~~~~~-~-~~~i~~~~  140 (411)
                      ++.|++||+.+.+.....   .+...+.++.|+|++..++.+..      +.|++||+.+ ++...... + ...+.+++
T Consensus        21 ~~~i~~~d~~~~~~~~~~---~~~~~v~~~~~spdg~~l~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVW---QTPELFEAPNWSPDGKYLLLNSE------GLLYRLSLAGDPSPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             CEEEEEEETTTTEEEEEE---EESSCCEEEEECTTSSEEEEEET------TEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred             ceeEEEEeCCCCceeeec---cCCcceEeeEECCCCCEEEEEcC------CeEEEEeCCCCCCceEeccccccccccceE
Confidence            889999999875543222   45566788999999988887763      8999999998 87766555 3 47789999


Q ss_pred             EcCCeEEEE--E-----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc--CCcceEE
Q 015198          141 LSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF--GLNMIKL  211 (411)
Q Consensus       141 ~~~~~~~~~--~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~~~~~~~  211 (411)
                      |+|++..++  .     ...|..+++.+++ ...+..+.   ....+.+++++..|++++..++.++||..  .......
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL---PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS---SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC---CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence            999998887  2     2455556655554 33343332   24556777778888766778899999774  4455666


Q ss_pred             EeccccceeEEEecCCCCEEEEEc-CCCeEEEEEECC-CCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC-------
Q 015198          212 INAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-------  282 (411)
Q Consensus       212 ~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-------  282 (411)
                      +..+...+.+++|+|+|++|+.++ .++. ++||++. .+..+..+..  +...+..++|+|+|++|++++.+       
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHP  244 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence            777888999999999999887665 5888 9999876 4555666665  66789999999999999988776       


Q ss_pred             ----CcEEEEEcccccc
Q 015198          283 ----GTVHIFSLRVRVV  295 (411)
Q Consensus       283 ----g~I~vwd~~~~~~  295 (411)
                          +.|++||+++++.
T Consensus       245 ~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             SSEEEEEEEEETTSCSC
T ss_pred             ccCceEEEEEecCCCCc
Confidence                4699999987653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=2.3e-20  Score=184.38  Aligned_cols=230  Identities=10%  Similarity=0.072  Sum_probs=163.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCC-EEEEEEeccCCeEEEEecCCCCCCCCCeEEE--
Q 015198           44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGG-FRIVEMLFRCNILALVGAGDNSQYPPTKVII--  118 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v--  118 (411)
                      ..+|++++|+|||++||+++  +|+++||++++.+ ...  +..+. ..+..+.|+|+ .++++++.+.  .+....+  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~-~~~--lt~~~~~~~~~~~~spd-~~l~~~~~~~--g~~~~~l~~   94 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE-TVK--LNREPINSVLDPHYGVG-RVILVRDVSK--GAEQHALFK   94 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE-EEE--CCSSCCSEECEECTTCS-EEEEEEECST--TSCCEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC-cEe--eecccccccccccCCCC-eEEEEeccCC--CCcceEEEE
Confidence            45799999999999999876  9999999986533 222  32444 57888999999 5555443200  0144445  


Q ss_pred             EEC-CCCcEEEEEeecCceeEEEEcCCe--EEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          119 WDD-HQSRCIGEFAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       119 wd~-~~~~~~~~~~~~~~i~~~~~~~~~--~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      ++. ..+... .+.....+...+|+|++  ..++  .++.+.+||+.+++.......+.     ..+.++|+|+.|++++
T Consensus        95 ~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-----~~~~~spDG~~la~~~  168 (582)
T 3o4h_A           95 VNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-----FGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             EETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-----CEEEEEEETTEEEEEE
T ss_pred             EeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-----ceEEECCCCCEEEEEE
Confidence            554 123322 33333334455677666  4444  45666699999887665554332     3455566777888644


Q ss_pred             CCC----CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCC--eEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198          194 LQR----GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG--TLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (411)
Q Consensus       194 ~~d----g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg--~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (411)
                       .+    +.|++|+........+..|...+..++|+|||++|+++..++  . |++||+.+++.. .+..  +...+..+
T Consensus       169 -~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~~--~~~~~~~~  243 (582)
T 3o4h_A          169 -FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLEL--PSKDFSSY  243 (582)
T ss_dssp             -EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECCC--SCSHHHHH
T ss_pred             -EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-EccC--CCcChhhh
Confidence             34    678888887777778888999999999999999999888888  7 999999998877 5544  55566666


Q ss_pred             E--------eCCCCCEEEEEeCCCcEEEEEc
Q 015198          268 A--------LSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       268 ~--------~spdg~~l~s~s~dg~I~vwd~  290 (411)
                      +        |+|||.++++++.|+++++|++
T Consensus       244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          244 RPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             hhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            6        9999998999999999999999

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=8.3e-20  Score=166.95  Aligned_cols=259  Identities=10%  Similarity=0.049  Sum_probs=181.5

Q ss_pred             CEEEEEe-CCcEEEEecCCCcceEEeecCCCCE-EEEEEeccCCe-EEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec
Q 015198           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF-RIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR  133 (411)
Q Consensus        57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~  133 (411)
                      ++|+++. ++.|.+||..+.+......+ .+.. .+..+.+++++ .+++++..+     +.|.+||+.+++.+..+...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~   75 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc-CCCCCCccceEEcCCCCEEEEEeCCC-----CeEEEEECCCCCeEeeEEcC
Confidence            4677887 99999999988665444433 2211 35567788887 455666655     89999999999988888743


Q ss_pred             C------ceeEEEEcCCeEEEE-E--------------cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          134 S------DVRSVKLSRDRIVVV-L--------------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       134 ~------~i~~~~~~~~~~~~~-~--------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      .      .+..++|+|++..++ .              ++.|++||+.+++.+..+..... ...+  .+++++..|+++
T Consensus        76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~--~~s~dg~~l~~~  152 (337)
T 1pby_B           76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-ITML--AWARDGSKLYGL  152 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-CCCE--EECTTSSCEEEE
T ss_pred             CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-ccee--EECCCCCEEEEe
Confidence            3      788999999996655 3              48999999999988887765432 2334  455566666654


Q ss_pred             cCCCCeEEEEEcCCc-ceEEEeccccceeEEEecCCCCEEEEEcCCC------------------------eEEEEEECC
Q 015198          193 GLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRG------------------------TLIRIFNTV  247 (411)
Q Consensus       193 g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg------------------------~~I~vwd~~  247 (411)
                         ++.|++|+.... ....+..+.. ...+.|+|+|+.|+..+..+                        . |.+||+.
T Consensus       153 ---~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~  227 (337)
T 1pby_B          153 ---GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG-LLTMDLE  227 (337)
T ss_dssp             ---SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE-EEEEETT
T ss_pred             ---CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc-eEEEeCC
Confidence               578999887654 4444443331 11237899998766554333                        3 6899999


Q ss_pred             CCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCC
Q 015198          248 DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPST  327 (411)
Q Consensus       248 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (411)
                      +++.. .+....+...+.+++|+|||++|+++  ++.|++||+.+++...                              
T Consensus       228 ~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~------------------------------  274 (337)
T 1pby_B          228 TGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK------------------------------  274 (337)
T ss_dssp             TCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE------------------------------
T ss_pred             CCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcc------------------------------
Confidence            98875 33322255678899999999999888  7899999998876431                              


Q ss_pred             CCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          328 GANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                                .+..+. ....++|+++ +.|++++.+|.+++|.+..
T Consensus       275 --------------------------~~~~~~-~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          275 --------------------------RVPLPH-SYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             --------------------------EEECSS-CCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             --------------------------eecCCC-ceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence                                      222222 2345789998 5688888899999997764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=1.1e-19  Score=167.40  Aligned_cols=241  Identities=13%  Similarity=0.151  Sum_probs=160.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe---CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecC-CCCCCCCCeEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG-DNSQYPPTKVI  117 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~~~d~~i~  117 (411)
                      .+...+..++|+|||++++++.   ++.|.+|++++........+..+...+..+.+++++..++.++ .+     +.|.
T Consensus        37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~-----~~v~  111 (347)
T 3hfq_A           37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK-----GTAE  111 (347)
T ss_dssp             EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT-----TEEE
T ss_pred             eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC-----CEEE
Confidence            3456678899999999444443   4799999997644322222223344556778888886555444 44     9999


Q ss_pred             EEECCC-Cc--EEEEEeec----------CceeEEEEcCCeEEEE---EcCeEEEEEcC-CceeeEE--EeccCCCcceE
Q 015198          118 IWDDHQ-SR--CIGEFAFR----------SDVRSVKLSRDRIVVV---LEHKIYVYSFV-DLKLLHQ--IETLANLRGLC  178 (411)
Q Consensus       118 vwd~~~-~~--~~~~~~~~----------~~i~~~~~~~~~~~~~---~dg~i~iwd~~-~~~~~~~--~~~~~~~~~~~  178 (411)
                      +|++.. +.  .+..+.+.          ..+.+++|+|++++++   .++.|++|++. +++....  +..... ....
T Consensus       112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-~~p~  190 (347)
T 3hfq_A          112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-FGPR  190 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-CCEE
T ss_pred             EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-CCCc
Confidence            999853 33  23333322          2378899999998555   47899999998 5543322  222221 2344


Q ss_pred             EEccCCCceEEEEecCCCCeEEEEEcCC--cc---eEEEeccc------cceeEEEecCCCCEEE-EEcCCCeEEEEEEC
Q 015198          179 CLSHHSSTSVLACPGLQRGQVRIEHFGL--NM---IKLINAHD------SHIACFTLTLDGLLLA-TASTRGTLIRIFNT  246 (411)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~---~~~~~~~~------~~i~~l~~sp~g~~l~-s~s~dg~~I~vwd~  246 (411)
                      .+.+++++.++++++..++.|.+|+...  ..   +..+....      ..+..++|+|+|++|+ +...++. |.+||+
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~  269 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAV  269 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEE
Confidence            5677778887777677889999987653  22   22333222      3578899999999774 5556788 999998


Q ss_pred             CC-C--ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC-CcEEEEEcc
Q 015198          247 VD-G--TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-GTVHIFSLR  291 (411)
Q Consensus       247 ~~-~--~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g~I~vwd~~  291 (411)
                      .. +  +.+..+..  +...+..++|+|||++|++++.+ +.|.+|+++
T Consensus       270 ~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          270 TADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             CGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            73 2  44445554  44568899999999998888765 889999664

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=9.7e-20  Score=183.96  Aligned_cols=236  Identities=11%  Similarity=0.027  Sum_probs=167.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC-
Q 015198           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-  123 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~-  123 (411)
                      ..|.+++|+|| +.++.+.++.|++||+.+.+. ....  .+...+..+.|+|++..++.. .+     +.|++||+.+ 
T Consensus        82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~-~~l~--~~~~~~~~~~~SpdG~~la~~-~~-----~~i~v~~~~~~  151 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKV-TYLF--DTNEETASLDFSPVGDRVAYV-RN-----HNLYIARGGKL  151 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEETTEEEEEETTTTEE-EEEE--CCTTCCTTCEECTTSSEEEEE-ET-----TEEEEEECBCT
T ss_pred             cCceeEEECCC-CeEEEEECCEEEEEECCCCce-EEcc--CCcccccCCcCCCCCCEEEEE-EC-----CeEEEEecCcc
Confidence            57999999999 777777899999999987543 2221  334446667899999777775 34     9999999988 


Q ss_pred             ----CcEEEEEe-ecCc--------------eeEEEEcCCeEEEE--E-c------------------------------
Q 015198          124 ----SRCIGEFA-FRSD--------------VRSVKLSRDRIVVV--L-E------------------------------  151 (411)
Q Consensus       124 ----~~~~~~~~-~~~~--------------i~~~~~~~~~~~~~--~-d------------------------------  151 (411)
                          ++...... ....              +.++.|+||++.++  . |                              
T Consensus       152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~  231 (706)
T 2z3z_A          152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP  231 (706)
T ss_dssp             TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred             cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence                77665444 2222              58999999998887  2 1                              


Q ss_pred             ---CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC-----eEEEEEcCCc-ceEEEec--ccc---
Q 015198          152 ---HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG-----QVRIEHFGLN-MIKLINA--HDS---  217 (411)
Q Consensus       152 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg-----~i~i~~~~~~-~~~~~~~--~~~---  217 (411)
                         ..|++||+.+++.............+..+.+++++..|+++. .++     .|++|+.... ....+..  +..   
T Consensus       232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~  310 (706)
T 2z3z_A          232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE  310 (706)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred             CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence               579999999887654433222223566777788888777643 333     7888887665 4444432  222   


Q ss_pred             ceeEEEecC--CCCEEEEEcCCCeEEEEEECC-CCceEEEEeCCCCCcceEE-EEeCCCCCEEEEEeCC-C----cEEEE
Q 015198          218 HIACFTLTL--DGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYS-IALSPNVQWLAVASDK-G----TVHIF  288 (411)
Q Consensus       218 ~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~-l~~spdg~~l~s~s~d-g----~I~vw  288 (411)
                      .+..++|+|  +|++|++++.++. ++||++. +++.+..+..  +...+.. ++|+|||+.|+.++.+ +    .|+.|
T Consensus       311 ~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          311 PLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             CCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             ccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence            246789999  9999999999998 9999876 6677777765  5556776 7999999988765554 3    45566


Q ss_pred             Eccccc
Q 015198          289 SLRVRV  294 (411)
Q Consensus       289 d~~~~~  294 (411)
                      |+.+++
T Consensus       388 d~~~~~  393 (706)
T 2z3z_A          388 DIKGGK  393 (706)
T ss_dssp             ETTCCC
T ss_pred             EcCCCC
Confidence            665543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=5.8e-20  Score=186.64  Aligned_cols=234  Identities=10%  Similarity=0.045  Sum_probs=168.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCc--ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      .|.+++|+|||++|++++++.|.+||+.+..  ....  +..+...+..+.|+|++..++.++.      +.|++||+.+
T Consensus       110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~--l~~~~~~~~~~~~SPDG~~la~~~~------~~i~~~d~~~  181 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQ--LTHGEGFATDAKLSPKGGFVSFIRG------RNLWVIDLAS  181 (741)
T ss_dssp             ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCB--CCCSSSCEEEEEECTTSSEEEEEET------TEEEEEETTT
T ss_pred             CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEE--cccCCcccccccCCCCCCEEEEEeC------CcEEEEecCC
Confidence            4889999999999999999999999998752  2222  3355566888999999988887764      7999999988


Q ss_pred             CcEEEEEee-cCc----------------eeEEEEcCCeEEEE---EcC-------------------------------
Q 015198          124 SRCIGEFAF-RSD----------------VRSVKLSRDRIVVV---LEH-------------------------------  152 (411)
Q Consensus       124 ~~~~~~~~~-~~~----------------i~~~~~~~~~~~~~---~dg-------------------------------  152 (411)
                      ++....... ...                +..+.|+||++.++   .|+                               
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            876654432 221                47899999998777   344                               


Q ss_pred             --eEEEEEcCC-ceeeEEEeccCCCcceEEEccCCCceEEEEecC----CCCeEEEEEcCCcce-EEEecccc----cee
Q 015198          153 --KIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGL----QRGQVRIEHFGLNMI-KLINAHDS----HIA  220 (411)
Q Consensus       153 --~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~dg~i~i~~~~~~~~-~~~~~~~~----~i~  220 (411)
                        .|++||+.+ ++.............+..+.+ +++..|++.+.    .+..|++|+...... ..+..+..    .+.
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence              889999988 775543322122234556667 77777776432    356788888765443 33444432    456


Q ss_pred             EEEecCCCCEEEEEcCCCeEEEEEECC-CCceEEEEeCCCCCcceEEE-EeCCCCCEEEE-EeCCC--cEEEEEccc
Q 015198          221 CFTLTLDGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSI-ALSPNVQWLAV-ASDKG--TVHIFSLRV  292 (411)
Q Consensus       221 ~l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l-~~spdg~~l~s-~s~dg--~I~vwd~~~  292 (411)
                      .++|+|||+++++++.++. ++||.+. +++ ...+..  +...+..+ .|+|||+.|+. ++.++  .++||+++.
T Consensus       341 ~~~~spdg~~~~~~~~~g~-~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTGF-QHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             CCEECTTSCEEEEECTTSS-CEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             ceEECCCCeEEEEecCCCc-cEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            8999999999999999997 7777665 445 556655  55678777 59999997765 44455  899999975

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=8.4e-20  Score=184.44  Aligned_cols=233  Identities=13%  Similarity=0.124  Sum_probs=161.7

Q ss_pred             eEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc--eEEeecCC--------------CCEEEEEEeccCCeEEEEecCCCC
Q 015198           47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKS--------------GGFRIVEMLFRCNILALVGAGDNS  109 (411)
Q Consensus        47 V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~--~~~~~~~~--------------~~~~~~~~~~~~~~~~l~s~~~d~  109 (411)
                      +..+.|.  |+.++++. ++ | +||+.+++.  ........              ....+..+.|+|+..++++.  + 
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~--~-  100 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFT--Q-  100 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEE--T-
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEE--C-
Confidence            5567888  66666666 66 8 999988655  22221100              01357888899995555553  2 


Q ss_pred             CCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCC-----ceeeEEEeccCCCc-------
Q 015198          110 QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVD-----LKLLHQIETLANLR-------  175 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~-----~~~~~~~~~~~~~~-------  175 (411)
                          +.|++||+.+++......+...+.+++|+|||+.++  .++.|++||+.+     ++.......+...+       
T Consensus       101 ----~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  176 (706)
T 2z3z_A          101 ----GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH  176 (706)
T ss_dssp             ----TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred             ----CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence                899999999988766666778899999999998877  899999999988     76654333222211       


Q ss_pred             -----ceEEEccCCCceEEEEecC--------------------------------CCCeEEEEEcCCcceEEEe---cc
Q 015198          176 -----GLCCLSHHSSTSVLACPGL--------------------------------QRGQVRIEHFGLNMIKLIN---AH  215 (411)
Q Consensus       176 -----~~~~~~~~~~~~~l~~~g~--------------------------------~dg~i~i~~~~~~~~~~~~---~~  215 (411)
                           ....+.++|+++.|+++..                                .+..|++|+........+.   .|
T Consensus       177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  256 (706)
T 2z3z_A          177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK  256 (706)
T ss_dssp             GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred             hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence                 0245666777788877541                                3456778887765544433   46


Q ss_pred             ccceeEEEecCCCCEEEEEcCCC-----eEEEEEECCCCceEEEEeCCCCCc---ceEEEEeCC--CCCEEEEEeCCCcE
Q 015198          216 DSHIACFTLTLDGLLLATASTRG-----TLIRIFNTVDGTRLQEVRRGVDRA---EIYSIALSP--NVQWLAVASDKGTV  285 (411)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg-----~~I~vwd~~~~~~~~~~~~~~~~~---~v~~l~~sp--dg~~l~s~s~dg~I  285 (411)
                      ...+..++|+|||++|++++.++     . |++||+.+++....+....+..   .+..++|+|  ||++|+++..|+.+
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~-v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~  335 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECK-VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN  335 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEE-EEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeE-EEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence            67899999999999999877665     7 9999999984444433211221   246789999  99999999999999


Q ss_pred             EEEEcc
Q 015198          286 HIFSLR  291 (411)
Q Consensus       286 ~vwd~~  291 (411)
                      +||+++
T Consensus       336 ~l~~~~  341 (706)
T 2z3z_A          336 HLYLYD  341 (706)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999987

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.84  E-value=2.4e-19  Score=188.74  Aligned_cols=238  Identities=11%  Similarity=0.075  Sum_probs=179.6

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ..+|...+.++.|+++ .+++++. ++.++||.++........ +..+. .+....|++++..++.+. +     +.|.+
T Consensus       199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~-l~~~~-~~~~~~~SpDG~~la~~~-~-----~~i~~  269 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRK-HTSFT-DYYPRHLNTDGRRILFSK-G-----GSIYI  269 (1045)
T ss_dssp             EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEE-CCCCC-SSCEEEEEESSSCEEEEE-T-----TEEEE
T ss_pred             CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceE-ecCCC-CcceeeEcCCCCEEEEEe-C-----CEEEE
Confidence            4679999999999998 5666666 899999987642222222 21222 233457888887666654 3     99999


Q ss_pred             EECCCCcEEEEEee------------cCceeEEEEc-CCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccC
Q 015198          119 WDDHQSRCIGEFAF------------RSDVRSVKLS-RDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH  183 (411)
Q Consensus       119 wd~~~~~~~~~~~~------------~~~i~~~~~~-~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (411)
                      ||+...+ +..+..            ...+.+++|+ |+++.++  .++.|++|++.+++... +..+.. ..+..+.++
T Consensus       270 ~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~~~~-~~~~~~~~s  346 (1045)
T 1k32_A          270 FNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLR-IRYVRRGGD  346 (1045)
T ss_dssp             ECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSC-EEEEEECSS
T ss_pred             ecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccCCCc-ceEEeeeEc
Confidence            9985443 333332            2368999999 9998776  78999999998776443 333322 245677777


Q ss_pred             CCceEEEEecCCCCeEE-EEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCc
Q 015198          184 SSTSVLACPGLQRGQVR-IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA  262 (411)
Q Consensus       184 ~~~~~l~~~g~~dg~i~-i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~  262 (411)
                       ++..|++.+ .++.+. +|+........+..|...+..++|+|||++|++++.++. |++||+.+++....+..  |..
T Consensus       347 -dg~~l~~~s-~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~--~~~  421 (1045)
T 1k32_A          347 -TKVAFIHGT-REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERS--REA  421 (1045)
T ss_dssp             -SEEEEEEEE-TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--SSS
T ss_pred             -CCCeEEEEE-CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccC--CCC
Confidence             888888755 477788 888777666666678889999999999999999999999 99999999998777766  777


Q ss_pred             ceEEEEeCCCCCEEEEEeCCC----------cEEEEEccccc
Q 015198          263 EIYSIALSPNVQWLAVASDKG----------TVHIFSLRVRV  294 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg----------~I~vwd~~~~~  294 (411)
                      .+.+++|+|||++|++++.++          .|++||+.+++
T Consensus       422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            889999999999999887654          89999998875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=2.7e-19  Score=164.42  Aligned_cols=229  Identities=8%  Similarity=-0.013  Sum_probs=162.6

Q ss_pred             EEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE-EEEecCCCCCCCCCeEEEEECCCCcE
Q 015198           49 SVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRC  126 (411)
Q Consensus        49 ~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~d~~i~vwd~~~~~~  126 (411)
                      .+++++++.+++++. ++.|.+||..+.+....... ........+.+++++. ++++...+     +.|.+||+.+++.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~~t~~~   77 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKN   77 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-CCCCCCceeEECCCCCEEEEEeCCC-----CcEEEEeCCCCcE
Confidence            356788888888888 99999999988655444443 2211345677888874 45555555     9999999999998


Q ss_pred             EEEEeec-------CceeEEEEcCCeEEEE---E------------cCeEEEEEcCCcee---eEEEeccCCCcceEEEc
Q 015198          127 IGEFAFR-------SDVRSVKLSRDRIVVV---L------------EHKIYVYSFVDLKL---LHQIETLANLRGLCCLS  181 (411)
Q Consensus       127 ~~~~~~~-------~~i~~~~~~~~~~~~~---~------------dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~  181 (411)
                      +..+...       ..+..++|+|+++.++   .            ++.|++||+.+++.   +..+..+.   .+.++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~  154 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMR  154 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEE
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC---ccccee
Confidence            8877732       2378999999997776   3            38999999988543   33443332   233444


Q ss_pred             cCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccc--------------------------------------------
Q 015198          182 HHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHD--------------------------------------------  216 (411)
Q Consensus       182 ~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~--------------------------------------------  216 (411)
                      +++++. +++.+   +.|.+|+... +.+..+..+.                                            
T Consensus       155 ~s~dg~-l~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  230 (349)
T 1jmx_B          155 AADDGS-LYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD  230 (349)
T ss_dssp             ECTTSC-EEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred             ECCCCc-EEEcc---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence            555666 44332   3388877643 3333332221                                            


Q ss_pred             ------------------------cceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198          217 ------------------------SHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       217 ------------------------~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (411)
                                              ..+..++|+| +|++|+++  ++. |++||+.+++.+..+..   ...+.+++|+|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~---~~~~~~~~~s~  304 (349)
T 1jmx_B          231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAANL---DHTYYCVAFDK  304 (349)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEEEC---SSCCCEEEECS
T ss_pred             cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEEcC---CCCccceEECC
Confidence                                    1345677889 99999888  788 99999999998888774   23577899999


Q ss_pred             CCCEEEEEeCCCcEEEEEccccccC
Q 015198          272 NVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       272 dg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +|++|++++.++.|++||+++++..
T Consensus       305 dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          305 KGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             SSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             CCCEEEEecCCCeEEEEecccccee
Confidence            9999988888999999999988755

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=1e-17  Score=154.26  Aligned_cols=281  Identities=12%  Similarity=0.061  Sum_probs=174.5

Q ss_pred             EEEEEe-----CCcEEEEecCCCcceEEe-ecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcE--EEE
Q 015198           58 CFAAGT-----SCGFRIYNCEPFKETFRR-DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC--IGE  129 (411)
Q Consensus        58 ~la~g~-----dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~--~~~  129 (411)
                      .+++|+     ++.|.+|.++.....+.. ....+......+.|+|++.+++++..+   .++.|.+|++.+++.  +..
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~   80 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNT   80 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeee
Confidence            455553     567888888753222211 111233345567889988755444320   128999999977653  333


Q ss_pred             Ee-ecCceeEEEEcCCeEEEE----EcCeEEEEEcC-Cc--eeeEEEeccCC-------CcceEEEccCCCceEEEEecC
Q 015198          130 FA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFV-DL--KLLHQIETLAN-------LRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       130 ~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~-~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      +. +...+..++|+|++++++    .++.|.+|++. ++  +.+..+.....       ......+.+++++. +++++.
T Consensus        81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~  159 (347)
T 3hfq_A           81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL  159 (347)
T ss_dssp             EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET
T ss_pred             eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC
Confidence            23 677889999999998665    46899999995 33  33333322111       11244566666777 555566


Q ss_pred             CCCeEEEEEcC-CcceEE---Eecc-ccceeEEEecCCCCEEEE-EcCCCeEEEEEECCC--Cce--EEEEeCCCC----
Q 015198          195 QRGQVRIEHFG-LNMIKL---INAH-DSHIACFTLTLDGLLLAT-ASTRGTLIRIFNTVD--GTR--LQEVRRGVD----  260 (411)
Q Consensus       195 ~dg~i~i~~~~-~~~~~~---~~~~-~~~i~~l~~sp~g~~l~s-~s~dg~~I~vwd~~~--~~~--~~~~~~~~~----  260 (411)
                      .++.|.+|+.. ...+..   +..+ ...+..++|+|+|++|++ ...++. |++|++..  ++.  +..+.....    
T Consensus       160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~  238 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ-IASLKYDTQTGAFTQLGIVKTIPADYTA  238 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred             CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCceEEeeeeeecCCCCCC
Confidence            78899998876 322222   2222 335778999999996665 556777 99999874  543  223332111    


Q ss_pred             CcceEEEEeCCCCCEEE-EEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccc
Q 015198          261 RAEIYSIALSPNVQWLA-VASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR  339 (411)
Q Consensus       261 ~~~v~~l~~spdg~~l~-s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (411)
                      ...+..++|+|||++|+ +...++.|.+|+++......                                          
T Consensus       239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~------------------------------------------  276 (347)
T 3hfq_A          239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT------------------------------------------  276 (347)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE------------------------------------------
T ss_pred             CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE------------------------------------------
Confidence            13588999999999874 55568999999997432110                                          


Q ss_pred             cccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeC-CcEEEEEEecCCCCcEEE
Q 015198          340 GVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMD-GSFYRCSFDPVHGGEMLQ  397 (411)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d-g~~~~~~~~~~~~~~~~~  397 (411)
                                 ....+.........++|+++ +.|++++.+ +.+.+|.++.+.| +...
T Consensus       277 -----------~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg-~l~~  324 (347)
T 3hfq_A          277 -----------LIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG-KLSL  324 (347)
T ss_dssp             -----------EEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEE
T ss_pred             -----------EeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC-eEEe
Confidence                       01122222223456789999 457777765 8999999987655 4443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=1.4e-18  Score=182.78  Aligned_cols=238  Identities=12%  Similarity=-0.012  Sum_probs=178.6

Q ss_pred             CCCCeEEEEEc-CCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCE-EEEEEeccCCeEEEEecCCCCCCCCCeEE-EE
Q 015198           43 DEIELISVSWN-QDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGF-RIVEMLFRCNILALVGAGDNSQYPPTKVI-IW  119 (411)
Q Consensus        43 h~~~V~~l~~s-~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~~~d~~i~-vw  119 (411)
                      |...|.+++|+ |||++|+++.++.+.+|+...... ..  +..+.. .+..+.|+ ++..++.++.+     ..+. +|
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~-~~--~~~~~~~~~~~~~~s-dg~~l~~~s~~-----~~l~~~~  364 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYV-LK--VPEPLRIRYVRRGGD-TKVAFIHGTRE-----GDFLGIY  364 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBE-EE--CSCCSCEEEEEECSS-SEEEEEEEETT-----EEEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEEcCEEEEEcCCCCce-EE--ccCCCcceEEeeeEc-CCCeEEEEECC-----CceEEEE
Confidence            44579999999 999999999999999999886442 22  334444 78889999 99888777666     8899 99


Q ss_pred             ECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC-
Q 015198          120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ-  195 (411)
Q Consensus       120 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-  195 (411)
                      |+.+++......+...+..++|+||++.++   .++.|++||+.+++....+..+...+..  ++++|++.+|++++.. 
T Consensus       365 d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~--~~~SpDG~~la~~~~~~  442 (1045)
T 1k32_A          365 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD--FTISDNSRFIAYGFPLK  442 (1045)
T ss_dssp             ETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC--EEECTTSCEEEEEEEEC
T ss_pred             ECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc--eEECCCCCeEEEEecCc
Confidence            988876554334667899999999998887   5789999999999888777666664444  4556667778775432 


Q ss_pred             --------CCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce----------------
Q 015198          196 --------RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR----------------  251 (411)
Q Consensus       196 --------dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~----------------  251 (411)
                              ++.|++|+........+..|...+..++|+|+|++|+.++.++. ..+|+......                
T Consensus       443 ~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (1045)
T 1k32_A          443 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPG  521 (1045)
T ss_dssp             SSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred             cccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccC-CcCcchhccccccccCceeEEEEeCCC
Confidence                    25899999887767778888888999999999999999988777 77776432211                


Q ss_pred             ---------------------------EEEEeCCCCCcceEEEEeCCCCCEEEE-------------EeCCCcEEEEEcc
Q 015198          252 ---------------------------LQEVRRGVDRAEIYSIALSPNVQWLAV-------------ASDKGTVHIFSLR  291 (411)
Q Consensus       252 ---------------------------~~~~~~~~~~~~v~~l~~spdg~~l~s-------------~s~dg~I~vwd~~  291 (411)
                                                 +..+..  +...+..++++|||+++++             ......|++||+.
T Consensus       522 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~--~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~  599 (1045)
T 1k32_A          522 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK  599 (1045)
T ss_dssp             CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC--CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETT
T ss_pred             CCCccccCcCccccccccccccCHhHceEEcCC--CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECC
Confidence                                       111111  4467889999999987775             1224468888887


Q ss_pred             ccc
Q 015198          292 VRV  294 (411)
Q Consensus       292 ~~~  294 (411)
                      +++
T Consensus       600 ~~~  602 (1045)
T 1k32_A          600 TRK  602 (1045)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.81  E-value=1.7e-17  Score=152.69  Aligned_cols=228  Identities=10%  Similarity=0.069  Sum_probs=168.7

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCC-------EEEEEEeccCCeEEE-Eec-CCCCCCCC
Q 015198           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGG-------FRIVEMLFRCNILAL-VGA-GDNSQYPP  113 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l-~s~-~~d~~~~d  113 (411)
                      ..+..++|+|+|++++++.  ++.|.+||.++.+...........       .....+.+++++..+ ++. +.+     
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-----  163 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE-----  163 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS-----
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC-----
Confidence            4477899999999776655  799999999886655554442211       236678888876433 333 344     


Q ss_pred             CeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCC--CcceEEEccCCCce
Q 015198          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN--LRGLCCLSHHSSTS  187 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  187 (411)
                      +.|.+||..+++.+..+. +...+..+.|+|++..++   .++.|.+||+.+++.+..+.....  ......+.+++++.
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  243 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ  243 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred             ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence            899999999999998888 666789999999987665   678999999999998888765221  12344456666666


Q ss_pred             EEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          188 VLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                      .++++...++.|.+|+... +.+..+....  ...++|+|+|+++++++ .++. |.+||+.+++.+..+..   ...+.
T Consensus       244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~-v~~~d~~~~~~~~~~~~---~~~~~  317 (353)
T 3vgz_A          244 RAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGK-VSVIDAKSYKVVKTFDT---PTHPN  317 (353)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTE-EEEEETTTTEEEEEEEC---CSEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCe-EEEEECCCCeEEEEEec---CCCCC
Confidence            6666666679999988754 4455555433  25799999999665554 6888 99999999999888875   33689


Q ss_pred             EEEeCCCCCEEEEEeCCC
Q 015198          266 SIALSPNVQWLAVASDKG  283 (411)
Q Consensus       266 ~l~~spdg~~l~s~s~dg  283 (411)
                      +++|+|||++|+++..++
T Consensus       318 ~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          318 SLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEECTTSCEEEEEEECC
T ss_pred             eEEEcCCCCEEEEEEccc
Confidence            999999999887776654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=4.8e-18  Score=171.99  Aligned_cols=240  Identities=9%  Similarity=-0.024  Sum_probs=162.6

Q ss_pred             CeEEEEEcCCCCEEEEEe-C---------CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           46 ELISVSWNQDYGCFAAGT-S---------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~-d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      .|.+++|+|||++|+++. +         +.+.+||+++.+.........+...+..+.|+|++..++.++.      +.
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~------~~  135 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE------NN  135 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET------TE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC------Ce
Confidence            499999999999999987 4         6788999987554211111223334667889999987777665      79


Q ss_pred             EEEEECCCCcEEEEEe-ecCce------------------eEEEEcCCeEEEE---EcC---------------------
Q 015198          116 VIIWDDHQSRCIGEFA-FRSDV------------------RSVKLSRDRIVVV---LEH---------------------  152 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i------------------~~~~~~~~~~~~~---~dg---------------------  152 (411)
                      |++||+.+++...... +...+                  .++.|+|||+.++   .++                     
T Consensus       136 i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (723)
T 1xfd_A          136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKP  215 (723)
T ss_dssp             EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred             EEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCccee
Confidence            9999999988776555 23333                  7899999998877   232                     


Q ss_pred             -------------eEEEEEcCCceeeEEEeccC----CCcceEEEccCCCceEEEEecC---CCCeEEEEEcCCcce-EE
Q 015198          153 -------------KIYVYSFVDLKLLHQIETLA----NLRGLCCLSHHSSTSVLACPGL---QRGQVRIEHFGLNMI-KL  211 (411)
Q Consensus       153 -------------~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~g~---~dg~i~i~~~~~~~~-~~  211 (411)
                                   .|++||+.+++....+..+.    ....+..+.++|+++++++...   .+..|++|+...... ..
T Consensus       216 ~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~  295 (723)
T 1xfd_A          216 YHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK  295 (723)
T ss_dssp             EECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred             ccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence                         79999998887655555431    1234566777788887765432   345677888765443 33


Q ss_pred             Eec-ccccee----EEEecCCCCEEEE--EcCCC------eEEEEEE-CCCCce--EEEEeCCCCCcceEE-EEeCCCCC
Q 015198          212 INA-HDSHIA----CFTLTLDGLLLAT--ASTRG------TLIRIFN-TVDGTR--LQEVRRGVDRAEIYS-IALSPNVQ  274 (411)
Q Consensus       212 ~~~-~~~~i~----~l~~sp~g~~l~s--~s~dg------~~I~vwd-~~~~~~--~~~~~~~~~~~~v~~-l~~spdg~  274 (411)
                      +.. +...+.    .++|+|||+.|+.  +..++      . |++|| ...++.  ...+..  +...+.. ++|+|||+
T Consensus       296 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~  372 (723)
T 1xfd_A          296 HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH-ITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGN  372 (723)
T ss_dssp             EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE-EEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTT
T ss_pred             EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE-EEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCC
Confidence            333 344443    7899999997664  45566      4 77777 344441  334443  2234444 69999999


Q ss_pred             EEEEEeCC---CcEEEEEccccc
Q 015198          275 WLAVASDK---GTVHIFSLRVRV  294 (411)
Q Consensus       275 ~l~s~s~d---g~I~vwd~~~~~  294 (411)
                      .|+..+.+   +.++||+++...
T Consensus       373 ~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          373 KIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             EEEEEESSSCTTCCEEEEECSST
T ss_pred             EEEEEEcCCCCcceEEEEEeCCC
Confidence            99866655   789999997643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=1.2e-17  Score=154.60  Aligned_cols=238  Identities=13%  Similarity=0.106  Sum_probs=156.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-C----CcEEEEecCCC--cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           43 DEIELISVSWNQDYGCFAAGT-S----CGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-d----g~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      +...+..++|+|||++|++++ +    +.|.+|+++..  ..........+......+.+ ....++++...+     +.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~-----~~  121 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSG-----GS  121 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTT-----TE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCC-----CE
Confidence            667788899999999999888 4    79999998763  22222222223334455555 333444444444     99


Q ss_pred             EEEEECCCCcEEE----EEee-----------cCceeEEEEcCCeEEEE----EcCeEEEEEcCCce-------ee----
Q 015198          116 VIIWDDHQSRCIG----EFAF-----------RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK-------LL----  165 (411)
Q Consensus       116 i~vwd~~~~~~~~----~~~~-----------~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~-------~~----  165 (411)
                      |.+|++.....+.    .+.+           ...+.+++|+|++++++    .++.|++|++....       ..    
T Consensus       122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence            9999987543321    1222           12357899999997554    37899999986533       21    


Q ss_pred             -EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE---EEe---ccccceeEEEecCCCCEEEEEcCC-
Q 015198          166 -HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK---LIN---AHDSHIACFTLTLDGLLLATASTR-  237 (411)
Q Consensus       166 -~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~---~~~---~~~~~i~~l~~sp~g~~l~s~s~d-  237 (411)
                       ..+.... ......+.++++++++++++..++.|.+|+.....+.   .+.   .+......++|+|||++|+++..+ 
T Consensus       202 ~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          202 PEAFKVAP-GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEEECCT-TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred             ccceecCC-CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence             1222211 2234567777888877776667899999887643332   222   223446799999999988776654 


Q ss_pred             -CeEEEEEECC--CCc--eEEEEeCCCCCcceEEEEeCCCCCEEEEEe-CCCcEEEEEcc
Q 015198          238 -GTLIRIFNTV--DGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLR  291 (411)
Q Consensus       238 -g~~I~vwd~~--~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~  291 (411)
                       +. |.+|++.  +++  .+..+..   ...+.+++|+|||++|++++ .++.|.+|+++
T Consensus       281 ~~~-i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          281 ADG-VAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             SCE-EEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCE-EEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence             77 9999985  455  3334442   33678999999999988887 67889997665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=7.9e-18  Score=156.29  Aligned_cols=242  Identities=11%  Similarity=0.084  Sum_probs=163.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCcEEEEecC-CCcceEEeecCCCCEEEEEEeccCCeE--EEEecC-------------
Q 015198           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCE-PFKETFRRDLKSGGFRIVEMLFRCNIL--ALVGAG-------------  106 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~-------------  106 (411)
                      ....+..++|+|+|++|++++.+.|.+|+++ +.+.........+. ....+.++|++.  +++++.             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCC-CCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            3456889999999999998883399999997 54332211111111 133477899887  344543             


Q ss_pred             CCCCCCCCeEEEEECC-CCcEEEEEe-----ecCceeEEEEcCCeEEEE----EcCeEEEEEcC-Cceee--EEEeccCC
Q 015198          107 DNSQYPPTKVIIWDDH-QSRCIGEFA-----FRSDVRSVKLSRDRIVVV----LEHKIYVYSFV-DLKLL--HQIETLAN  173 (411)
Q Consensus       107 ~d~~~~d~~i~vwd~~-~~~~~~~~~-----~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~-~~~~~--~~~~~~~~  173 (411)
                      .+     +.+.+|++. +++....+.     +...+.+++|+|++++++    .++.|++||+. +++..  ..+.....
T Consensus       117 ~~-----g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T 1jof_A          117 FA-----GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             SC-----CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             CC-----ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence            34     899999987 466554443     346789999999997665    25799999998 67653  23332111


Q ss_pred             CcceEEEccCCCceEEEEecCCCCeEEEEEcC---Ccce---EEEec-------ccc------ceeEEE-ecCCCCEEEE
Q 015198          174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG---LNMI---KLINA-------HDS------HIACFT-LTLDGLLLAT  233 (411)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~---~~~~---~~~~~-------~~~------~i~~l~-~sp~g~~l~s  233 (411)
                      ......+.++++++++++++..++.|.+|+.+   ++..   ..+..       |..      .+..++ |+|||++|++
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v  271 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence            22456677778888887766667899997654   2221   12221       122      578999 9999998887


Q ss_pred             EcCCC------eEEEEEECC-CCceEEE---EeCCCCCcceEEEEeCC---CCCEEEEEeCC-CcEEEEEcccc
Q 015198          234 ASTRG------TLIRIFNTV-DGTRLQE---VRRGVDRAEIYSIALSP---NVQWLAVASDK-GTVHIFSLRVR  293 (411)
Q Consensus       234 ~s~dg------~~I~vwd~~-~~~~~~~---~~~~~~~~~v~~l~~sp---dg~~l~s~s~d-g~I~vwd~~~~  293 (411)
                      ++.+.      . |.+|++. +++....   +..  +...+..++|+|   ||++|++++.+ +.|.||+++..
T Consensus       272 ~~~~~~~~~~~~-i~v~~~~~~g~~~~~~~~~~~--~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          272 SSRANKFELQGY-IAGFKLRDCGSIEKQLFLSPT--PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEESSTTSCCE-EEEEEECTTSCEEEEEEEEEC--SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ECCCCCCCCCCe-EEEEEECCCCCEEEeeeeeec--CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            65432      7 9999996 6665432   322  333466789999   89999998865 89999999865

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=4.9e-18  Score=158.69  Aligned_cols=245  Identities=9%  Similarity=-0.062  Sum_probs=157.9

Q ss_pred             cCCCCCCeEE-----EEEcCCCCEEEEEe--CCc--EEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCC
Q 015198           40 SDVDEIELIS-----VSWNQDYGCFAAGT--SCG--FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ  110 (411)
Q Consensus        40 ~~~h~~~V~~-----l~~s~~g~~la~g~--dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  110 (411)
                      +..|......     .+|+|||++|+.++  ++.  |.+||+++.+... . ...+...+....|+|++..|+....+  
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-l-t~~~~~~~~~~~~spdg~~l~~~~~~--  101 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-L-TEGRGDNTFGGFLSPDDDALFYVKDG--  101 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-C-CCSSCBCSSSCEECTTSSEEEEEETT--
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-e-eeCCCCCccceEEcCCCCEEEEEeCC--
Confidence            4445555555     88999999999877  453  7777877644322 2 22333333356799999877777766  


Q ss_pred             CCCCeEEEEECCCCcEEEEEee-cCceeEE--EEcCCeEEEE-------------------------EcCeEEEEEcCCc
Q 015198          111 YPPTKVIIWDDHQSRCIGEFAF-RSDVRSV--KLSRDRIVVV-------------------------LEHKIYVYSFVDL  162 (411)
Q Consensus       111 ~~d~~i~vwd~~~~~~~~~~~~-~~~i~~~--~~~~~~~~~~-------------------------~dg~i~iwd~~~~  162 (411)
                         +.|++||+.+++....+.. ...+...  .+++++..++                         .+..|++||+.++
T Consensus       102 ---~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A          102 ---RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             ---TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             ---CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence               8999999999988776663 3334333  3488888776                         1267999999988


Q ss_pred             eeeEEEeccCCCcceEEEccCC-CceEEEEecCC-----CCeEEEEEcCCcceEEEeccc--cceeEEEecCCCCEEEEE
Q 015198          163 KLLHQIETLANLRGLCCLSHHS-STSVLACPGLQ-----RGQVRIEHFGLNMIKLINAHD--SHIACFTLTLDGLLLATA  234 (411)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~-----dg~i~i~~~~~~~~~~~~~~~--~~i~~l~~sp~g~~l~s~  234 (411)
                      +...... +..  ....+.++| ++..|++....     ...|.+++..+.....+..+.  ..+..++|+|||+.|+..
T Consensus       179 ~~~~l~~-~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~  255 (388)
T 3pe7_A          179 ESTVILQ-ENQ--WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYV  255 (388)
T ss_dssp             CEEEEEE-ESS--CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred             ceEEeec-CCc--cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEE
Confidence            6554443 333  345566677 77777765432     336777777666666665554  357789999999977654


Q ss_pred             cC-C----CeEEEEEECCCCceEEEEeCCCCCcc---eEEEEeCCCCCEEEEE---------eCCCcEEEEEcccccc
Q 015198          235 ST-R----GTLIRIFNTVDGTRLQEVRRGVDRAE---IYSIALSPNVQWLAVA---------SDKGTVHIFSLRVRVV  295 (411)
Q Consensus       235 s~-d----g~~I~vwd~~~~~~~~~~~~~~~~~~---v~~l~~spdg~~l~s~---------s~dg~I~vwd~~~~~~  295 (411)
                      +. +    .. |++||+.+++.........+...   ...+.|+|||+.|+..         ..+..|++||+.+++.
T Consensus       256 ~~~~~~~~~~-l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          256 SYLKGSPDRF-IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             EEETTCCCEE-EEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             ecCCCCCcce-EEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence            43 2    24 99999999875332221101000   1123799999988754         4456899999988764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=1.1e-19  Score=183.92  Aligned_cols=241  Identities=10%  Similarity=-0.003  Sum_probs=159.0

Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCE---EEEEEeccCCeEEEEecCCCCC----CCCCeEEEEEC
Q 015198           49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGF---RIVEMLFRCNILALVGAGDNSQ----YPPTKVIIWDD  121 (411)
Q Consensus        49 ~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s~~~d~~----~~d~~i~vwd~  121 (411)
                      +++|+|||++++.+.|+.|++||+.+.+......  .+..   .+..+.|+||+..++.++....    ..++.|++||+
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILS--NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC--HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc--cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            7899999976666559999999998865433221  2211   2678889999987776654100    00289999999


Q ss_pred             CCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEec-cCCCc---------------ceEEEccC
Q 015198          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIET-LANLR---------------GLCCLSHH  183 (411)
Q Consensus       122 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~-~~~~~---------------~~~~~~~~  183 (411)
                      .+++.+........+..++|+|||+.++  .++.|++||+.+++....... +...+               ....+.++
T Consensus        98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS  177 (719)
T 1z68_A           98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS  177 (719)
T ss_dssp             TTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred             CCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence            9887632122346788999999998887  899999999988776543211 11100               01256777


Q ss_pred             CCceEEEEecCCCC---------------------------------eEEEEEcCCcceE---E------EeccccceeE
Q 015198          184 SSTSVLACPGLQRG---------------------------------QVRIEHFGLNMIK---L------INAHDSHIAC  221 (411)
Q Consensus       184 ~~~~~l~~~g~~dg---------------------------------~i~i~~~~~~~~~---~------~~~~~~~i~~  221 (411)
                      |+++.|++....++                                 .|++|+.......   .      +.+|...+..
T Consensus       178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (719)
T 1z68_A          178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW  257 (719)
T ss_dssp             TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred             CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence            78888887543221                                 6677887665431   1      2357888999


Q ss_pred             EEecCCCCEEEEEcC--C--CeEEEEEE----CCCCceEEEE----eCCCCCcceE-----EEEeCCCCCEEEE--EeCC
Q 015198          222 FTLTLDGLLLATAST--R--GTLIRIFN----TVDGTRLQEV----RRGVDRAEIY-----SIALSPNVQWLAV--ASDK  282 (411)
Q Consensus       222 l~~sp~g~~l~s~s~--d--g~~I~vwd----~~~~~~~~~~----~~~~~~~~v~-----~l~~spdg~~l~s--~s~d  282 (411)
                      ++|+||++++++...  +  .. |++||    +.+++....+    ..  +...+.     .+.|+|||+.|+.  ...+
T Consensus       258 ~~~SpD~~~~~~~~~~~~~~~~-l~~~d~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  334 (719)
T 1z68_A          258 LTWVTDERVCLQWLKRVQNVSV-LSICDFREDWQTWDCPKTQEHIEES--RTGWAGGFFVSTPVFSYDAISYYKIFSDKD  334 (719)
T ss_dssp             EEESSSSEEEEEEEESSTTEEE-EEEEEECSSSSSEECCGGGEEEEEC--SSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred             eEEeCCCeEEEEEeccccCeEE-EEEEcccCCCCCCceEEEEeccccc--CCceEccccCCccEECCCCCeEEEEEEccC
Confidence            999999887776432  2  34 88899    7777654333    23  445555     7899999996654  4456


Q ss_pred             Cc--EEEEEccccc
Q 015198          283 GT--VHIFSLRVRV  294 (411)
Q Consensus       283 g~--I~vwd~~~~~  294 (411)
                      |.  |++|++.+++
T Consensus       335 g~~~l~~~~~~~~~  348 (719)
T 1z68_A          335 GYKHIHYIKDTVEN  348 (719)
T ss_dssp             SCEEEEEESSCSTT
T ss_pred             CceEEEEEECCCCc
Confidence            64  6666665544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=3.4e-16  Score=139.93  Aligned_cols=243  Identities=14%  Similarity=0.179  Sum_probs=176.0

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec----CCCCEEEEEEec-cCCeEEEEecCC-CCCCC
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL----KSGGFRIVEMLF-RCNILALVGAGD-NSQYP  112 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~l~s~~~-d~~~~  112 (411)
                      ..++-..+.+++++++++++++.. ++.|.+|+.+. +.......    ..+......+.+ .+++.++++... +    
T Consensus        25 ~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~----   99 (286)
T 1q7f_A           25 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT----   99 (286)
T ss_dssp             STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG----
T ss_pred             CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC----
Confidence            345667899999999999888877 89999999773 33222211    012234667777 467777766542 4    


Q ss_pred             CCeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          113 PTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                       +.|.+|| .+++.+..+.  ....+.++++++++.+++   .++.|++||. +++.+..+...........+..++++.
T Consensus       100 -~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A          100 -HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             -CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             -CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCC
Confidence             8999999 6788777775  345789999999998776   3688999995 456666664322222456677777777


Q ss_pred             EEEEecCCCCeEEEEEcCCcceEEEecc--ccceeEEEecCCCCEEEEEcCCC-eEEEEEECCCCceEEEEeCCCCCcce
Q 015198          188 VLACPGLQRGQVRIEHFGLNMIKLINAH--DSHIACFTLTLDGLLLATASTRG-TLIRIFNTVDGTRLQEVRRGVDRAEI  264 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg-~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (411)
                      ++++ ...++.|++|+..++.+..+..+  ...+..++++++|+++++...++ . |.+||. +++.+..+..+.....+
T Consensus       177 l~v~-~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~  253 (286)
T 1q7f_A          177 IFIS-DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFTQ-DGQLISALESKVKHAQC  253 (286)
T ss_dssp             EEEE-EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEECT-TSCEEEEEEESSCCSCE
T ss_pred             EEEE-ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEECC-CCCEEEEEcccCCCCcc
Confidence            6554 45688999999888777766543  35788999999999888887776 8 999995 67777777653333457


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          265 YSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .+++++|+|+++++ +.|++|++|++....
T Consensus       254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          254 FDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             eeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            89999999987766 678999999986643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=2.3e-17  Score=151.47  Aligned_cols=228  Identities=9%  Similarity=0.025  Sum_probs=162.4

Q ss_pred             EeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC--ceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeE
Q 015198           93 MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS--DVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH  166 (411)
Q Consensus        93 ~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~  166 (411)
                      +.+.+++.++++++.+     +.|.+||+.+++.+..+....  .+..++|+|++..++    .++.|++||+.+++.+.
T Consensus         5 ~~~~~~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCCTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccccCCCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            3466777888887777     999999999999988888555  788999999986443    47899999999998887


Q ss_pred             EEeccCCC----cceEEEccCCCceEEEEecCC-----------CCeEEEEEcCCc----ceEEEeccccceeEEEecCC
Q 015198          167 QIETLANL----RGLCCLSHHSSTSVLACPGLQ-----------RGQVRIEHFGLN----MIKLINAHDSHIACFTLTLD  227 (411)
Q Consensus       167 ~~~~~~~~----~~~~~~~~~~~~~~l~~~g~~-----------dg~i~i~~~~~~----~~~~~~~~~~~i~~l~~sp~  227 (411)
                      .+.....+    .....+.++++++.+++++..           ++.|.+|+....    .+..+. +...+.+++|+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~d  158 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADD  158 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTT
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCC
Confidence            77643221    112344556667777765422           489999887642    223333 3446889999999


Q ss_pred             CCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC-----------------------------------------------
Q 015198          228 GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-----------------------------------------------  260 (411)
Q Consensus       228 g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-----------------------------------------------  260 (411)
                      |+ +++++  +. |++||+.+++.+..+..+..                                               
T Consensus       159 g~-l~~~~--~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          159 GS-LYVAG--PD-IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             SC-EEEES--SS-EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             Cc-EEEcc--Cc-EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            99 55554  45 99999999988777654210                                               


Q ss_pred             -------------------CcceEEEEeCC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCc
Q 015198          261 -------------------RAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD  320 (411)
Q Consensus       261 -------------------~~~v~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (411)
                                         ...+..++|+| |+++|+++  ++.|++||+.+++...                       
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~-----------------------  289 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK-----------------------  289 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE-----------------------
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE-----------------------
Confidence                               01345677889 99999888  8899999998876431                       


Q ss_pred             cccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          321 TLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                                       .+..+. ....++|+++ +.|++++.+|.+++|....
T Consensus       290 ---------------------------------~~~~~~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          290 ---------------------------------AANLDH-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             ---------------------------------EEECSS-CCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             ---------------------------------EEcCCC-CccceEECCCCCEEEEecCCCeEEEEeccc
Confidence                                             222222 2335789998 6788877789999998754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.78  E-value=6.4e-17  Score=149.74  Aligned_cols=279  Identities=15%  Similarity=0.090  Sum_probs=171.0

Q ss_pred             CCEEEEEe-----CCcEEEEecCCC--cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC--CcE
Q 015198           56 YGCFAAGT-----SCGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ--SRC  126 (411)
Q Consensus        56 g~~la~g~-----dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~--~~~  126 (411)
                      ..++++|+     ++.|.+|.++..  +......+  +......+.|+|++..+++++.+. ..++.|.+|++..  ++.
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~g~~   89 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEKGTL   89 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTTTEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCCCcE
Confidence            34566664     568999988642  22222211  333444577888886555554420 0127999998765  433


Q ss_pred             E--EEEe-ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeE----EEeccC-C-------CcceEEEccCCCce
Q 015198          127 I--GEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH----QIETLA-N-------LRGLCCLSHHSSTS  187 (411)
Q Consensus       127 ~--~~~~-~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~----~~~~~~-~-------~~~~~~~~~~~~~~  187 (411)
                      .  .... +......+++  ++..++    .++.|.+|++.....+.    .+.... .       ......+.++|+++
T Consensus        90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~  167 (361)
T 3scy_A           90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK  167 (361)
T ss_dssp             EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred             EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence            2  2233 3456777788  544443    47899999996543221    111110 0       11234566777888


Q ss_pred             EEEEecCCCCeEEEEEcCCcc-------e-------EEEeccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCce-
Q 015198          188 VLACPGLQRGQVRIEHFGLNM-------I-------KLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTR-  251 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~~~-------~-------~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~-  251 (411)
                      ++++++..++.|.+|+.....       +       .....+......++|+|+|++|++++ .++. |.+||+.+++. 
T Consensus       168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~~g~~~  246 (361)
T 3scy_A          168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYADGMLD  246 (361)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEETTEEE
T ss_pred             EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEecCCceE
Confidence            777767678899998765322       1       11223455678999999999887776 5788 99999987754 


Q ss_pred             -EEEEeCC-CCCcceEEEEeCCCCCEEEEEeCC--CcEEEEEccc--cccCCCCCCCCCCCCcccccccCCCCCccccCC
Q 015198          252 -LQEVRRG-VDRAEIYSIALSPNVQWLAVASDK--GTVHIFSLRV--RVVGEDSSSSLSTPSQSTELLNHSSSFDTLISP  325 (411)
Q Consensus       252 -~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~d--g~I~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (411)
                       +..+... .+...+..++|+|||++|+++..+  +.|.+|+++.  ++..                             
T Consensus       247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~-----------------------------  297 (361)
T 3scy_A          247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT-----------------------------  297 (361)
T ss_dssp             EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE-----------------------------
T ss_pred             EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE-----------------------------
Confidence             3333321 123456899999999998776654  7899999973  2211                             


Q ss_pred             CCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEE-eCCcEEEEEEecCCCCcEE
Q 015198          326 STGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVS-MDGSFYRCSFDPVHGGEML  396 (411)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~dg~~~~~~~~~~~~~~~~  396 (411)
                                               ....+.. ......++|+++ +.|++++ .++.+.+|.++.+.| +..
T Consensus       298 -------------------------~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g-~~~  343 (361)
T 3scy_A          298 -------------------------KVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG-LLT  343 (361)
T ss_dssp             -------------------------EEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC-CEE
T ss_pred             -------------------------EeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC-cEe
Confidence                                     0112222 123345789999 4577777 469999999997554 443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=3.1e-17  Score=155.65  Aligned_cols=169  Identities=14%  Similarity=0.129  Sum_probs=123.9

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCce----------eeEEEe---ccCCCcceE
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLK----------LLHQIE---TLANLRGLC  178 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~----------~~~~~~---~~~~~~~~~  178 (411)
                      +.+++|+... .     .....+..+++++++.+++  ....+++|+.....          .+....   .......+.
T Consensus        23 ~~vri~~~~~-~-----~~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   96 (434)
T 2oit_A           23 KKVRIFDSPE-E-----LPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH   96 (434)
T ss_dssp             CEEECSCCCS-S-----CCCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred             eeEEecCCcc-c-----cCCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence            5677776321 1     1234578888988776666  43448888753110          000000   001112466


Q ss_pred             EEccCCCceEEEE---ecCCCCeEEEEEcCCc------------ceEEEeccccceeEEEecCC-CCEEEEEcCCCeEEE
Q 015198          179 CLSHHSSTSVLAC---PGLQRGQVRIEHFGLN------------MIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIR  242 (411)
Q Consensus       179 ~~~~~~~~~~l~~---~g~~dg~i~i~~~~~~------------~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~  242 (411)
                      ++++++++.+|++   +|+.|+.|+||+....            ....+.+|...|.+++|+|+ +.+|++++.||. |+
T Consensus        97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~  175 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IA  175 (434)
T ss_dssp             EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EE
T ss_pred             EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EE
Confidence            7777788888885   6889999999986532            13455679999999999998 889999999999 99


Q ss_pred             EEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      +||++++..+.....  |...|.+++|+|+|++|++|+.||.|++||++
T Consensus       176 iwD~~~~~~~~~~~~--~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          176 VLQVTETVKVCATLP--STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEEESSSEEEEEEEC--GGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             EEEcCCCcceeeccC--CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            999999877666655  77899999999999999999999999999998

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=2.9e-16  Score=148.91  Aligned_cols=237  Identities=14%  Similarity=0.098  Sum_probs=160.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc---------eEE-----eecCCCCEEEEEEeccCCeEEEE----e
Q 015198           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE---------TFR-----RDLKSGGFRIVEMLFRCNILALV----G  104 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~~~~~~l~----s  104 (411)
                      ...++.+++++++.++++++ ++ ++||+......         ...     ..+ .+...+.++.|++++..++    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence            44689999999999999999 55 99987642110         000     001 2334588999999998888    7


Q ss_pred             cCCCCCCCCCeEEEEECCCC--------cEE---EEEe-ecCceeEEEEcCC-eEEEE---EcCeEEEEEcCCceeeEEE
Q 015198          105 AGDNSQYPPTKVIIWDDHQS--------RCI---GEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQI  168 (411)
Q Consensus       105 ~~~d~~~~d~~i~vwd~~~~--------~~~---~~~~-~~~~i~~~~~~~~-~~~~~---~dg~i~iwd~~~~~~~~~~  168 (411)
                      ++.|     +.|++||+.++        +.+   ..+. |...|.+++|+|+ +.+++   .|+.|++||+++++.+...
T Consensus       114 gs~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~  188 (434)
T 2oit_A          114 SEYG-----SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT  188 (434)
T ss_dssp             TTTE-----EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred             cCCC-----ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence            8887     99999997654        222   2333 7899999999997 55555   7999999999988776666


Q ss_pred             eccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEecc-------ccceeEEEecCCCCEEEEEc-CC---
Q 015198          169 ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH-------DSHIACFTLTLDGLLLATAS-TR---  237 (411)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~-------~~~i~~l~~sp~g~~l~s~s-~d---  237 (411)
                      ..|..  .+.++++++++.+|++ |+.||.|++|+.++.....+..|       ...|.+++|++++.++++.+ .+   
T Consensus       189 ~~~~~--~v~~v~wspdg~~las-gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~  265 (434)
T 2oit_A          189 LPSTV--AVTSVCWSPKGKQLAV-GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL  265 (434)
T ss_dssp             ECGGG--CEEEEEECTTSSCEEE-EETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred             cCCCC--ceeEEEEcCCCCEEEE-EcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence            65555  4556666667778876 66899999999886655555544       23899999999988775433 33   


Q ss_pred             ---CeEEEEEECCCCc-----eEEEEeCC-----CCCcceEEEEeCCCCCEEEEEeC-CCcEEEEEcc
Q 015198          238 ---GTLIRIFNTVDGT-----RLQEVRRG-----VDRAEIYSIALSPNVQWLAVASD-KGTVHIFSLR  291 (411)
Q Consensus       238 ---g~~I~vwd~~~~~-----~~~~~~~~-----~~~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~  291 (411)
                         .. +++|++...+     ....+...     ..+.+...+.+-++.+++++++. .+.|.|+...
T Consensus       266 ~~~~~-v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          266 ETSPD-VVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             SSCCE-EEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             CCCCc-eEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence               24 8899997652     11121110     12223333444467777665554 4557777643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=7.2e-18  Score=171.11  Aligned_cols=246  Identities=12%  Similarity=0.065  Sum_probs=163.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCE-----EEEEEeccCCeEEEEecCCCCC----CCCC
Q 015198           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGF-----RIVEMLFRCNILALVGAGDNSQ----YPPT  114 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~~~d~~----~~d~  114 (411)
                      .....+++|+|||++|+++ |+.|++|++.+++......  .+..     ....+.|+||+..++.+..+..    ...+
T Consensus        16 ~~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             cccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEe--chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            3456789999999999987 9999999998866433322  2221     2233678999887776654300    0115


Q ss_pred             eEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEe-ccCCCc---------------c
Q 015198          115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIE-TLANLR---------------G  176 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~-~~~~~~---------------~  176 (411)
                      .+.+||+.+++......+...+...+|+|||+.++  .++.|++|++.+++..+... ++...+               .
T Consensus        93 ~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           93 SYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            67799999988654334678899999999999888  89999999998876543211 111100               1


Q ss_pred             eEEEccCCCceEEEEecCCCC-----------------------------------eEEEEEcCC---c---ceEEEec-
Q 015198          177 LCCLSHHSSTSVLACPGLQRG-----------------------------------QVRIEHFGL---N---MIKLINA-  214 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg-----------------------------------~i~i~~~~~---~---~~~~~~~-  214 (411)
                      ...+.|+||++.||+....++                                   .|++|+...   .   ....+.. 
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence            123567778888887531111                                   466677766   4   4444543 


Q ss_pred             -----cccceeEEEecCCCCEEEEEcC----CCeEEEEEECCCCc----e--EEEE--eCCCCCcceE-----EEEeCCC
Q 015198          215 -----HDSHIACFTLTLDGLLLATAST----RGTLIRIFNTVDGT----R--LQEV--RRGVDRAEIY-----SIALSPN  272 (411)
Q Consensus       215 -----~~~~i~~l~~sp~g~~l~s~s~----dg~~I~vwd~~~~~----~--~~~~--~~~~~~~~v~-----~l~~spd  272 (411)
                           |...+..++|+|||++++....    +.. |++||+.+++    +  +..+  ..  +...|.     .+.|+||
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~-i~~~d~~tg~~~~~~~~~~~l~~~~--~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSV-MDICDYDESSGRWNCLVARQHIEMS--TTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE-EEEEEEETTTTEEEECGGGCEEEEC--SSSCSSSSSCCCCEECTT
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE-EEEEECCCCccccceeEEEEeeecc--CCceEccCcCCCceEcCC
Confidence                 7788999999999997665432    336 9999999887    1  1122  22  333333     6889999


Q ss_pred             CCEEE-EEeC-CC--cEEEEEcccccc
Q 015198          273 VQWLA-VASD-KG--TVHIFSLRVRVV  295 (411)
Q Consensus       273 g~~l~-s~s~-dg--~I~vwd~~~~~~  295 (411)
                      |+.|+ ..+. +|  .|++|++.+++.
T Consensus       330 G~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          330 GNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             SSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             CCEEEEEEEcCCCceEEEEEECCCCce
Confidence            99877 6654 44  588888876653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.73  E-value=1.8e-15  Score=140.34  Aligned_cols=227  Identities=12%  Similarity=0.078  Sum_probs=146.2

Q ss_pred             EEEEEe---CCcEEEEecCCCcceEE--eecC-CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC-CCcEEEEE
Q 015198           58 CFAAGT---SCGFRIYNCEPFKETFR--RDLK-SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH-QSRCIGEF  130 (411)
Q Consensus        58 ~la~g~---dg~i~iw~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~-~~~~~~~~  130 (411)
                      +|++|+   ++.|.+|+++.....+.  .... .+...+..+.+++++..+++++.      +.|.+|++. +++.....
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~------~~v~~~~~~~~g~~~~~~   77 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM------KKWSSFAVKSPTEIVHEA   77 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB------TEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc------ceEEEEEECCCCCEEEee
Confidence            456666   25788887753222121  1110 12234556788999877766654      489999987 77765544


Q ss_pred             eec--CceeEEEEcCCeEE--EE----------------EcCeEEEEEcC-CceeeEEEec--cCCCcceEEEccCCCce
Q 015198          131 AFR--SDVRSVKLSRDRIV--VV----------------LEHKIYVYSFV-DLKLLHQIET--LANLRGLCCLSHHSSTS  187 (411)
Q Consensus       131 ~~~--~~i~~~~~~~~~~~--~~----------------~dg~i~iwd~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~  187 (411)
                      .+.  +....++|+|+++.  ++                .++.+.+|++. +++....+..  +........+.++++++
T Consensus        78 ~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~  157 (365)
T 1jof_A           78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence            432  44667899999984  32                26789999997 4665544432  11222455666777777


Q ss_pred             EEEEecCCCCeEEEEEcC-Ccce---EEEe--ccccceeEEEecCCCCEEEEEcC-CCeEEEEEECC--CCceE---EEE
Q 015198          188 VLACPGLQRGQVRIEHFG-LNMI---KLIN--AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTV--DGTRL---QEV  255 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~-~~~~---~~~~--~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~--~~~~~---~~~  255 (411)
                      +++++...++.|++|+.. ...+   ..+.  .|...+..++|+|+|++|++++. ++. |.+|++.  +++..   ..+
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~  236 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe-EEEEEEeCCCCcEEEccceE
Confidence            777655456799998876 3322   2233  23567899999999999887765 577 9999765  56643   223


Q ss_pred             eCCC-----CCc------ceEEEE-eCCCCCEEEEEeCCC------cEEEEEcc
Q 015198          256 RRGV-----DRA------EIYSIA-LSPNVQWLAVASDKG------TVHIFSLR  291 (411)
Q Consensus       256 ~~~~-----~~~------~v~~l~-~spdg~~l~s~s~dg------~I~vwd~~  291 (411)
                      ....     +..      .+..++ |+|||++|+++..+.      .|.+|+++
T Consensus       237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            2210     111      488999 999999988766432      79999997

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.73  E-value=2e-16  Score=156.16  Aligned_cols=230  Identities=9%  Similarity=0.058  Sum_probs=165.9

Q ss_pred             cCCCC-CCeEEEEEcCCCCEEEEEe----CCcEEEEecCC--CcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           40 SDVDE-IELISVSWNQDYGCFAAGT----SCGFRIYNCEP--FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        40 ~~~h~-~~V~~l~~s~~g~~la~g~----dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      ...|. ..|.+++|+|| ++++++.    +...+||.++.  ....... .......+..+.++++..+++++..+    
T Consensus        59 lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l-~~~~~~~~~~~s~dg~~~~~~s~~~~----  132 (582)
T 3o4h_A           59 LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL-EAVKPMRILSGVDTGEAVVFTGATED----  132 (582)
T ss_dssp             CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC-TTSCSBEEEEEEECSSCEEEEEECSS----
T ss_pred             eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccc-cCCCCceeeeeCCCCCeEEEEecCCC----
Confidence            44455 68999999999 6666655    34567776654  3332222 12334445566667777888887764    


Q ss_pred             CCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---Ec----CeEEEEEcCCceeeEEEeccCCCcceEEEccCCC
Q 015198          113 PTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (411)
                        .+.+||+.+++......+..  .++.|+|||+.++   .+    ..|++||+.+++.. .+..+..  ....+.++|+
T Consensus       133 --~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~--~~~~~~~SpD  205 (582)
T 3o4h_A          133 --RVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEG--SFSSASISPG  205 (582)
T ss_dssp             --CEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSC--EEEEEEECTT
T ss_pred             --CceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCC--ccccceECCC
Confidence              44599999887766555544  8899999999888   34    67999999887765 5555544  4567777888


Q ss_pred             ceEEEEecCCCC--eEEEEEcCCcceEEEeccccceeEEE--------ecCCCCEEEEEcCCCeEEEEEECCCCceEEEE
Q 015198          186 TSVLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFT--------LTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (411)
Q Consensus       186 ~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~l~--------~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (411)
                      ++.|+. +..++  .|++|+..+.....+..|...+..++        |+|||.++++++.++. +++|++  |+.+.  
T Consensus       206 G~~l~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~--g~~~~--  279 (582)
T 3o4h_A          206 MKVTAG-LETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-SAVFID--GERVE--  279 (582)
T ss_dssp             SCEEEE-EECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE-EEEEET--TEEEC--
T ss_pred             CCEEEE-ccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc-EEEEEE--CCeec--
Confidence            888884 55777  78888887665556677777777777        9999999999999999 999999  66543  


Q ss_pred             eCCCCCcceEEEEeCCCCCEEEEEeCCCc---EEEEEccc
Q 015198          256 RRGVDRAEIYSIALSPNVQWLAVASDKGT---VHIFSLRV  292 (411)
Q Consensus       256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~---I~vwd~~~  292 (411)
                       .  ..+.+.+++|+ +++++++++.+.+   +++|++.+
T Consensus       280 -~--~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          280 -A--PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             -C--CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             -c--CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence             2  44578999999 9999988887754   66666553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.72  E-value=2.9e-16  Score=146.78  Aligned_cols=234  Identities=9%  Similarity=-0.082  Sum_probs=150.7

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CC--cEEEEecCCCcceEEeecCCCCEEEEE-EeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           45 IELISVSWNQDYGCFAAGT--SC--GFRIYNCEPFKETFRRDLKSGGFRIVE-MLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~--dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      ..+..++|+|||++|+...  ++  .|.+|++++.+. ..  +..+...... +.|+|++..++....+     +.|++|
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-~~--l~~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~  107 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-VQ--LTEGKGDNTFGGFISTDERAFFYVKNE-----LNLMKV  107 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-EE--CCCSSCBCTTTCEECTTSSEEEEEETT-----TEEEEE
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-EE--eecCCCCccccceECCCCCEEEEEEcC-----CcEEEE
Confidence            3477889999999988776  23  577778776432 22  2123322222 5688998877776665     789999


Q ss_pred             ECCCCcEEEEEe-ecCceeE-------------------EEEcCCeEEEE--------EcCeEEEEEcCCceeeEEEecc
Q 015198          120 DDHQSRCIGEFA-FRSDVRS-------------------VKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIETL  171 (411)
Q Consensus       120 d~~~~~~~~~~~-~~~~i~~-------------------~~~~~~~~~~~--------~dg~i~iwd~~~~~~~~~~~~~  171 (411)
                      |+.+++...... +......                   +.++|++..++        .+..|++||+.+++...... +
T Consensus       108 d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~  186 (396)
T 3c5m_A          108 DLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-D  186 (396)
T ss_dssp             ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-E
T ss_pred             ECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-C
Confidence            999888766555 2221111                   23566665543        24579999998887655443 3


Q ss_pred             CCCcceEEEccCC-CceEEEEecCCC-----CeEEEEEcCCcceEEEecc--ccceeEEEecCCCCEEEEEcCC-----C
Q 015198          172 ANLRGLCCLSHHS-STSVLACPGLQR-----GQVRIEHFGLNMIKLINAH--DSHIACFTLTLDGLLLATASTR-----G  238 (411)
Q Consensus       172 ~~~~~~~~~~~~~-~~~~l~~~g~~d-----g~i~i~~~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~d-----g  238 (411)
                      ..  ....+.+++ ++..|++.....     ..|.+++..+.....+..+  ...+..++|+|+|++|+.++.+     +
T Consensus       187 ~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  264 (396)
T 3c5m_A          187 TA--WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDR  264 (396)
T ss_dssp             SS--CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred             Cc--ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccc
Confidence            33  334455555 556555543221     3577777766554444433  2357889999999987776543     5


Q ss_pred             eEEEEEECCCCceEEEEeCCCCCcceEEEEeCC-CCCEEEEEe----------------CCCcEEEEEcccccc
Q 015198          239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-NVQWLAVAS----------------DKGTVHIFSLRVRVV  295 (411)
Q Consensus       239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s----------------~dg~I~vwd~~~~~~  295 (411)
                      . |++||+.+++.......   . ... +.|+| ||++|+.++                .++.|++||+.+++.
T Consensus       265 ~-l~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          265 V-IYKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             E-EEEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             e-EEEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            5 99999988876543332   1 123 89999 999888765                346799999987753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=4.2e-15  Score=135.79  Aligned_cols=243  Identities=11%  Similarity=0.025  Sum_probs=172.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-C------------------------CcEEEEecCCCcceEEeecCCCCEEEEEEecc
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-S------------------------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR   96 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (411)
                      ..-+.+.+|+++|+|+++++.. +                        +.|.+||.++.+.. ...-...-.....++++
T Consensus        21 ~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           21 LLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-QSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             CCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE-EEECTTTCSSEEEEEEC
T ss_pred             eecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE-eccCCCccCCceEEEEC
Confidence            3457799999999999998887 5                        36999998765543 22111233456778888


Q ss_pred             CCeEEEEecCCCCCCCCCeEEEEECCCCc-EEEEEe----------ecCceeEEEEcC-CeEEEE-E---cCeEEEEEcC
Q 015198           97 CNILALVGAGDNSQYPPTKVIIWDDHQSR-CIGEFA----------FRSDVRSVKLSR-DRIVVV-L---EHKIYVYSFV  160 (411)
Q Consensus        97 ~~~~~l~s~~~d~~~~d~~i~vwd~~~~~-~~~~~~----------~~~~i~~~~~~~-~~~~~~-~---dg~i~iwd~~  160 (411)
                      +++.++++...+     +.|++||..... .+..+.          +-.....++++| ++.+++ .   ++.|++|| .
T Consensus       100 ~~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~  173 (329)
T 3fvz_A          100 TDGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-P  173 (329)
T ss_dssp             TTSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-T
T ss_pred             CCCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-C
Confidence            888888887766     999999965442 455552          123578999999 777776 2   57899999 5


Q ss_pred             CceeeEEEeccCCC--------cceEEEccCCC-ceEEEEecCCCCeEEEEEcC-CcceEEEe--ccccceeEEEecCCC
Q 015198          161 DLKLLHQIETLANL--------RGLCCLSHHSS-TSVLACPGLQRGQVRIEHFG-LNMIKLIN--AHDSHIACFTLTLDG  228 (411)
Q Consensus       161 ~~~~~~~~~~~~~~--------~~~~~~~~~~~-~~~l~~~g~~dg~i~i~~~~-~~~~~~~~--~~~~~i~~l~~sp~g  228 (411)
                      +++.+..+......        .....++.+++ +.++ ++...++.|++|+.. ++.+..+.  .+...+..++|+| +
T Consensus       174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~-v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g  251 (329)
T 3fvz_A          174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC-VADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G  251 (329)
T ss_dssp             TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEE-EEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T
T ss_pred             CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEE-EEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C
Confidence            67777776432211        12445566666 4444 446678899999987 77777763  4566788999999 4


Q ss_pred             CEEEE-------EcCCCeEEEEEECCCCceEEEEeC-CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          229 LLLAT-------ASTRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       229 ~~l~s-------~s~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      ..+++       ...+.. |++||+.+++.+..+.. ..+...+..|+++|+|.++++...++.|++|+++...
T Consensus       252 ~~~~~~g~~~v~~~~~~~-v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~  324 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQ-GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM  324 (329)
T ss_dssp             EEEEEECCCCTTCSCCCC-EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred             EEEEeCCCEEeccCCCcE-EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence            33333       334457 99999999999888742 1145578999999999888888889999999997643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=9.7e-16  Score=143.02  Aligned_cols=242  Identities=10%  Similarity=0.034  Sum_probs=158.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEe---------------
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVG---------------  104 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s---------------  104 (411)
                      .++...+..+.|+|||+.|+.+. ++.|++||+.+.+.......+........+.+++++..++.               
T Consensus        77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A           77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred             eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence            34455555788999999999999 88999999998665544444333233334445777766653               


Q ss_pred             -------cCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcC-CeEEEE--E-------cCeEEEEEcCCceeeEE
Q 015198          105 -------AGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR-DRIVVV--L-------EHKIYVYSFVDLKLLHQ  167 (411)
Q Consensus       105 -------~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~--~-------dg~i~iwd~~~~~~~~~  167 (411)
                             ...+     ..|.+||+.+++......+...+..+.|+| |+..++  .       ...|+++|+..++. ..
T Consensus       157 ~~~~~~~~~~~-----~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~  230 (388)
T 3pe7_A          157 KFHEFYFTKPC-----CRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RK  230 (388)
T ss_dssp             HHHHHGGGCCC-----EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EE
T ss_pred             hhhhhhccCCc-----ceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EE
Confidence                   1222     789999999998776666778899999999 998876  2       23788888765443 33


Q ss_pred             EeccCCCcceEEEccCCCceEEEEecCCCC----eEEEEEcCCcceEEEecccc------ceeEEEecCCCCEEEEE---
Q 015198          168 IETLANLRGLCCLSHHSSTSVLACPGLQRG----QVRIEHFGLNMIKLINAHDS------HIACFTLTLDGLLLATA---  234 (411)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg----~i~i~~~~~~~~~~~~~~~~------~i~~l~~sp~g~~l~s~---  234 (411)
                      +..+.....+....++|++..|++.+..++    .|++|+........+.....      ....++|+|||+.|+..   
T Consensus       231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  310 (388)
T 3pe7_A          231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD  310 (388)
T ss_dssp             SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred             eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence            333322123455667778777766443322    38888877655444322211      01224799999987754   


Q ss_pred             ------cCCCeEEEEEECCCCceEEEEeCCCCCc-----------ceEEEEeCCCCCEEEEEe-CCCcEEEEEccc
Q 015198          235 ------STRGTLIRIFNTVDGTRLQEVRRGVDRA-----------EIYSIALSPNVQWLAVAS-DKGTVHIFSLRV  292 (411)
Q Consensus       235 ------s~dg~~I~vwd~~~~~~~~~~~~~~~~~-----------~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~  292 (411)
                            ..+.. |++||+.+++.. .+..  +..           .+..++|+|||+.|+..+ .+|...||.++-
T Consensus       311 ~~~~~~~~~~~-i~~~d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          311 DSGYKIENDPF-LYVFNMKNGTQH-RVAR--HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             ------CCCCE-EEEEETTTTEEE-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             ccccccCCCCE-EEEEeccCCceE-Eecc--ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence                  44567 999999887654 4443  333           477889999999888666 467666666543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.70  E-value=1.2e-14  Score=133.46  Aligned_cols=223  Identities=8%  Similarity=-0.021  Sum_probs=144.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe----------CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           43 DEIELISVSWNQDYGCFAAGT----------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      .-..+..+++  ||++++...          ++.|.+|++++.+.. .  +    ..+..+.|+|++..++....+....
T Consensus        13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~--l----~~~~~~~~SpDg~~la~~~~~~~~~   83 (347)
T 2gop_A           13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-F--I----ENATMPRISPDGKKIAFMRANEEKK   83 (347)
T ss_dssp             CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-E--E----ESCEEEEECTTSSEEEEEEEETTTT
T ss_pred             eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-E--c----ccCCCeEECCCCCEEEEEEeccCCC
Confidence            3456788888  999888642          456888898875432 1  2    3456788999987666544320000


Q ss_pred             CCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E-c---------------------------CeEEEEEcCCc
Q 015198          113 PTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L-E---------------------------HKIYVYSFVDL  162 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-d---------------------------g~i~iwd~~~~  162 (411)
                      ...|.+||+.+++......... +..+.|+||+..++  . +                           ..|++||+.++
T Consensus        84 ~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           84 VSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred             cceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence            1458889998887766666555 99999999998776  2 2                           57999999988


Q ss_pred             eeeEEEeccCCCcceEEEccCCCceEEEEecCCC------C-eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEc
Q 015198          163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR------G-QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS  235 (411)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d------g-~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s  235 (411)
                      +.+..+.. . .+  ..+.+++++ ++++ +..+      . ...||..+......+..+ ..+..+  +|+|++|+.++
T Consensus       163 ~~~~~l~~-~-~~--~~~~~spdg-~~~~-~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~  233 (347)
T 2gop_A          163 EVIEEFEK-P-RF--SSGIWHRDK-IVVN-VPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYG  233 (347)
T ss_dssp             EEEEEEEE-E-TT--CEEEEETTE-EEEE-EECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEE
T ss_pred             eEEeeecC-C-Cc--ccccCCCCe-EEEE-EecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEE
Confidence            87455544 2 33  344555666 5444 3222      1 334433224344455545 555544  99999887766


Q ss_pred             CC--------CeEEEEEECCCCceEEEEeCCCCCcceEE-EEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          236 TR--------GTLIRIFNTVDGTRLQEVRRGVDRAEIYS-IALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       236 ~d--------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~-l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      .+        .. |++||  +++.. .+... +...+.. +.|+ |+ ++++++.++.++|| +.+
T Consensus       234 ~~~~~~~~~~~~-l~~~d--~~~~~-~l~~~-~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~  291 (347)
T 2gop_A          234 KPEKKYMSEHNK-LYIYD--GKEVM-GILDE-VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD  291 (347)
T ss_dssp             CCSSSCCCSSCE-EEEEC--SSCEE-ESSTT-CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred             ccccCCccccce-EEEEC--CCceE-ecccc-CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence            43        35 88888  55543 33322 4567886 9999 88 88999999999999 884

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.69  E-value=2.1e-14  Score=131.14  Aligned_cols=236  Identities=13%  Similarity=0.102  Sum_probs=158.6

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      ..|.+++|++++..++... ++.++.|.-   +....  +..+......+.|++++.+++++..+     +.|.+||..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~g~l~~~~~~~-----~~i~~~d~~~   75 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA---EPWLE--ISKKGLQLEGLNFDRQGQLFLLDVFE-----GNIFKINPET   75 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EEEEE--EESSCCCEEEEEECTTSCEEEEETTT-----CEEEEECTTT
T ss_pred             cccceeeecCCccceeEEeecccCccccc---ceeEE--EeccCccccCcEECCCCCEEEEECCC-----CEEEEEeCCC
Confidence            3477888999887776656 888999932   22222  22444456778888988887776666     8999999988


Q ss_pred             CcEEEEE-eecCceeEEEEcCCeEEEE--E-c----CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198          124 SRCIGEF-AFRSDVRSVKLSRDRIVVV--L-E----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (411)
Q Consensus       124 ~~~~~~~-~~~~~i~~~~~~~~~~~~~--~-d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (411)
                      ++..... .+...+.++++++++.+++  . +    +.|++||..+++....+...........+..++++.+++.....
T Consensus        76 ~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  155 (333)
T 2dg1_A           76 KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG  155 (333)
T ss_dssp             CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred             CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence            8876555 3567899999999998766  2 2    48999998877654344322222245566677777776653211


Q ss_pred             -----CCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEE-EEcCCCeEEEEEECCC-CceEEEE-----eCCCCCcc
Q 015198          196 -----RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLA-TASTRGTLIRIFNTVD-GTRLQEV-----RRGVDRAE  263 (411)
Q Consensus       196 -----dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~-s~s~dg~~I~vwd~~~-~~~~~~~-----~~~~~~~~  263 (411)
                           .+.|..++..+.....+..+...+..++|+|+|+.|+ +.+.++. |++||+.+ +..+..+     ........
T Consensus       156 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~~~  234 (333)
T 2dg1_A          156 YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFGATIPYYFTGHEG  234 (333)
T ss_dssp             BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred             cccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCCCcCcccccceEEEecCCCCC
Confidence                 2445555554444444444445678999999998654 4456788 99999864 4433221     11001136


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          264 IYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      +..++++++|+++++...++.|.+||.+
T Consensus       235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          235 PDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            7889999999988887788899999873

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=4e-15  Score=149.01  Aligned_cols=240  Identities=10%  Similarity=-0.032  Sum_probs=159.2

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEE--e-CCcEEEEecCCCcceEEeecCCCCEEEE---------EEec--cCCeEE-EE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAG--T-SCGFRIYNCEPFKETFRRDLKSGGFRIV---------EMLF--RCNILA-LV  103 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g--~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~-l~  103 (411)
                      ...+|...|..++|++++-+++..  . ++...||..........  +..+...+.         .+.|  +||+.. ++
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES--ALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE--SSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce--eCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            456788999999999987777777  4 78899999744343332  323333322         3333  377765 44


Q ss_pred             ecCCCCCCCCCeEEEEECC--C-CcEEEEEe-----ecCceeEEEEcCCeEEEE---Ec----------CeEEEEEcCC-
Q 015198          104 GAGDNSQYPPTKVIIWDDH--Q-SRCIGEFA-----FRSDVRSVKLSRDRIVVV---LE----------HKIYVYSFVD-  161 (411)
Q Consensus       104 s~~~d~~~~d~~i~vwd~~--~-~~~~~~~~-----~~~~i~~~~~~~~~~~~~---~d----------g~i~iwd~~~-  161 (411)
                      .....    +..|.+|++.  . ++......     +...+..++|+|||+.++   .+          ..|++||+.+ 
T Consensus        96 ~~~~~----~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  171 (662)
T 3azo_A           96 FTHFG----DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS  171 (662)
T ss_dssp             EEBTT----TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred             EEECC----CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence            43321    2778888876  3 44332222     345788999999998777   34          5899999987 


Q ss_pred             -----ceeeEEEe-ccCCCcceEEEccCCCceEEEEecCCC-------CeEEEEEcCC-c---ceEEE-eccccceeEEE
Q 015198          162 -----LKLLHQIE-TLANLRGLCCLSHHSSTSVLACPGLQR-------GQVRIEHFGL-N---MIKLI-NAHDSHIACFT  223 (411)
Q Consensus       162 -----~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d-------g~i~i~~~~~-~---~~~~~-~~~~~~i~~l~  223 (411)
                           ++. ..+. .+..  ....+.++|+++.|++++...       ..|++|+... .   ....+ ..|...+..++
T Consensus       172 ~~~~~~~~-~~l~~~~~~--~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~  248 (662)
T 3azo_A          172 AAADRSAV-RELSDDAHR--FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE  248 (662)
T ss_dssp             TTTCGGGS-EESSCSCSS--EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred             ccccCCce-eEEEecCCC--cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence                 544 3333 3222  444566777888887755222       4788888762 3   33444 45578899999


Q ss_pred             ecCCCCEEEEEcCCC--eEEEEEECCCCceEEEEeCCCCCcc--------eEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          224 LTLDGLLLATASTRG--TLIRIFNTVDGTRLQEVRRGVDRAE--------IYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       224 ~sp~g~~l~s~s~dg--~~I~vwd~~~~~~~~~~~~~~~~~~--------v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      |+|||+++++++.++  . |++||+.+++.......  +...        +..++|+|++++++++.. +.++||.++
T Consensus       249 ~spdg~l~~~~~~~~~~~-l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          249 WAPDGSLIVATDRTGWWN-LHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             ECTTSCEEEEECTTSSCE-EEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred             ECCCCeEEEEECCCCCeE-EEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence            999999888888887  6 77777767765433222  2211        567899999999999998 999999554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=1.4e-13  Score=122.87  Aligned_cols=234  Identities=13%  Similarity=0.145  Sum_probs=168.5

Q ss_pred             EEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee-------cCceeEEEE-cCCeEEEE-E---cCeEE
Q 015198           88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF-------RSDVRSVKL-SRDRIVVV-L---EHKIY  155 (411)
Q Consensus        88 ~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~-------~~~i~~~~~-~~~~~~~~-~---dg~i~  155 (411)
                      .....+.+++++.++++...+     +.|.+||.. ++.+..+..       ...+..+++ .+++.+++ .   ++.|+
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~-----~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNN-----HRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGG-----TEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CCCceEEECCCCCEEEEECCC-----CEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            446677788888777776655     899999976 666666642       246789999 57777666 3   78999


Q ss_pred             EEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEe--ccccceeEEEecCCCCEEEE
Q 015198          156 VYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFTLTLDGLLLAT  233 (411)
Q Consensus       156 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~--~~~~~i~~l~~sp~g~~l~s  233 (411)
                      +|| .+++.+..+.... ......+..++++.++++ ...++.|.+|+..++.+..+.  .+...+..++++++|+++++
T Consensus       104 ~~d-~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~-~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATI-LQHPRGVTVDNKGRIIVV-ECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             EEC-TTSCEEEEECTTT-CSCEEEEEECTTSCEEEE-ETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             EEC-CCCcEEEEecCcc-CCCceEEEEeCCCCEEEE-ECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence            999 6677776664322 123456666677766554 456788999988877766664  34456889999999998888


Q ss_pred             EcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC-cEEEEEccccccCCCCCCCCCCCCccccc
Q 015198          234 ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG-TVHIFSLRVRVVGEDSSSSLSTPSQSTEL  312 (411)
Q Consensus       234 ~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg-~I~vwd~~~~~~~~~~~~~~~~~~~~~~~  312 (411)
                      ...++. |++||. +++.+..+....+...+..++++++|+++++...++ .|.+|+.. ++..                
T Consensus       181 ~~~~~~-i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~----------------  241 (286)
T 1q7f_A          181 DNRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI----------------  241 (286)
T ss_dssp             EGGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE----------------
T ss_pred             ECCCCE-EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEE----------------
Confidence            888888 999996 667776775422235789999999999888887776 89999853 3211                


Q ss_pred             ccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCC--CceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          313 LNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPE--VTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                                                              ..+..+.  .....+++++++.|++++.|+.|++|.+..
T Consensus       242 ----------------------------------------~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          242 ----------------------------------------SALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             ----------------------------------------EEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             ----------------------------------------EEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence                                                    1122211  234567899998898888899999998764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.65  E-value=2.1e-13  Score=121.11  Aligned_cols=186  Identities=13%  Similarity=0.102  Sum_probs=146.6

Q ss_pred             eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec--CceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCc
Q 015198           99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR--SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLR  175 (411)
Q Consensus        99 ~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~  175 (411)
                      +.++++++.+     +.|.+||.++|+.+..+...  ..+.++.+.|+|++++ .++.|+.||. +++.+..+..+.. .
T Consensus         5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~-~   77 (276)
T 3no2_A            5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAG-C   77 (276)
T ss_dssp             CEEEEECTTC-----SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTT-C
T ss_pred             CcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCC-c
Confidence            4566667766     99999999899999999843  4789999999999888 7888999998 8999999876421 2


Q ss_pred             ceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEec------cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC
Q 015198          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (411)
                      ......+.+++.++++.+..++.|..++.+++.+..+..      +......+++.++|++|++...++. |..||.. |
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v~~~d~~-G  155 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-VREIAPN-G  155 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-EEEECTT-S
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-EEEECCC-C
Confidence            345566677788887644326667667778877776642      2234556778999999999999999 9999987 9


Q ss_pred             ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +.+.++...   ..+.++.+.++|++|+++..++.|..+|.++|+..
T Consensus       156 ~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~  199 (276)
T 3no2_A          156 QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV  199 (276)
T ss_dssp             CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred             CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence            999998863   34566788899999999888889999999988754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.65  E-value=5.5e-16  Score=156.84  Aligned_cols=191  Identities=14%  Similarity=0.105  Sum_probs=134.8

Q ss_pred             EEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC----ceeEEEEcCCeEEEE---E---------cCeEE
Q 015198           92 EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS----DVRSVKLSRDRIVVV---L---------EHKIY  155 (411)
Q Consensus        92 ~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~---~---------dg~i~  155 (411)
                      .+.|++++.+++++. +     +.|++||+.+++....+.+..    .+.+++|+|||+.++   .         ++.|+
T Consensus        20 ~~~~s~dg~~~~~~~-d-----~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEYLHQSA-D-----NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEEEEECT-T-----SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeEEEEcC-C-----CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            567889997776654 5     999999999999887776432    389999999999887   2         58999


Q ss_pred             EEEcCCceee--EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEe--ccccce------------
Q 015198          156 VYSFVDLKLL--HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHI------------  219 (411)
Q Consensus       156 iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~--~~~~~i------------  219 (411)
                      +||+.+++.+  ..+.   .  .+..+.++|+++.|+++  .++.|++|+........+.  ++...|            
T Consensus        94 ~~d~~~g~~~~~~~l~---~--~~~~~~~SPDG~~la~~--~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee  166 (719)
T 1z68_A           94 IYDLSNGEFVRGNELP---R--PIQYLCWSPVGSKLAYV--YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEE  166 (719)
T ss_dssp             EEETTTTEECCSSCCC---S--SBCCEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHH
T ss_pred             EEECCCCccccceecC---c--ccccceECCCCCEEEEE--ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeee
Confidence            9999988763  1221   2  23345566677778875  4789999987654433332  222211            


Q ss_pred             -----eEEEecCCCCEEEEEcCCC----------------------------------eEEEEEECCCCceE--EEEeC-
Q 015198          220 -----ACFTLTLDGLLLATASTRG----------------------------------TLIRIFNTVDGTRL--QEVRR-  257 (411)
Q Consensus       220 -----~~l~~sp~g~~l~s~s~dg----------------------------------~~I~vwd~~~~~~~--~~~~~-  257 (411)
                           .+++|+|||++|++++.|.                                  . |++||+.+++.+  ..+.. 
T Consensus       167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~  245 (719)
T 1z68_A          167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR-IFIIDTTYPAYVGPQEVPVP  245 (719)
T ss_dssp             TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE-EEEEESSCHHHHCCEECCCC
T ss_pred             cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE-EEEEECCCCCccceeEccCC
Confidence                 4899999999999887552                                  5 899999887652  12211 


Q ss_pred             ---CCCCcceEEEEeCCCCCEEEEEeCCC----cEEEEE----ccccccC
Q 015198          258 ---GVDRAEIYSIALSPNVQWLAVASDKG----TVHIFS----LRVRVVG  296 (411)
Q Consensus       258 ---~~~~~~v~~l~~spdg~~l~s~s~dg----~I~vwd----~~~~~~~  296 (411)
                         ..+...+..++|+||++++++....+    .|.+||    +.+++..
T Consensus       246 ~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          246 AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred             ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence               01666899999999988777644332    488899    7777654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=1.4e-13  Score=125.74  Aligned_cols=206  Identities=9%  Similarity=0.085  Sum_probs=143.9

Q ss_pred             EEEEEeccCCeEEEEecCCCCCC-------------------CCCeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEE
Q 015198           89 RIVEMLFRCNILALVGAGDNSQY-------------------PPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIV  147 (411)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~-------------------~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~  147 (411)
                      .+..+++++++.++++...+...                   .++.|.+||..+++.+..+.  +-.....+++++++.+
T Consensus        25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l  104 (329)
T 3fvz_A           25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNY  104 (329)
T ss_dssp             CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCE
T ss_pred             CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCE
Confidence            46667778877777766543100                   12479999998899877665  2357889999999987


Q ss_pred             EE---EcCeEEEEEcCCce-eeEEEec-------cCCCcceEEEccCC-CceEEEEecCCCCeEEEEEcCCcceEEEecc
Q 015198          148 VV---LEHKIYVYSFVDLK-LLHQIET-------LANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFGLNMIKLINAH  215 (411)
Q Consensus       148 ~~---~dg~i~iwd~~~~~-~~~~~~~-------~~~~~~~~~~~~~~-~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~  215 (411)
                      ++   .++.|++||..... .+..+..       .........+++++ ++.++++.+..++.|++|+.++..+..+...
T Consensus       105 ~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~  184 (329)
T 3fvz_A          105 WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEE  184 (329)
T ss_dssp             EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEE
T ss_pred             EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccC
Confidence            76   46899999975432 4555532       11112455666776 5566554322588999998888777766432


Q ss_pred             ----------ccceeEEEecCC-CCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEE------
Q 015198          216 ----------DSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV------  278 (411)
Q Consensus       216 ----------~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s------  278 (411)
                                -.....++++|+ +.++++...++. |++||..+++.+..+....+...+..++|+| +..+++      
T Consensus       185 g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v  262 (329)
T 3fvz_A          185 SSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYF  262 (329)
T ss_dssp             CCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCT
T ss_pred             CCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEe
Confidence                      234789999998 777777778888 9999998899998886554666788999999 433333      


Q ss_pred             -EeCCCcEEEEEccccccC
Q 015198          279 -ASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       279 -~s~dg~I~vwd~~~~~~~  296 (411)
                       ...+..|++|++.+++..
T Consensus       263 ~~~~~~~v~~~~~~~g~~~  281 (329)
T 3fvz_A          263 GDQEPVQGFVMNFSSGEII  281 (329)
T ss_dssp             TCSCCCCEEEEETTTCCEE
T ss_pred             ccCCCcEEEEEEcCCCeEE
Confidence             334458999999887644

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.64  E-value=5.1e-13  Score=119.85  Aligned_cols=234  Identities=8%  Similarity=-0.064  Sum_probs=162.7

Q ss_pred             ccCCCCCCeEEEEEcCCCC-EEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           39 FSDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~-~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+.....+++|+|+|+ +++++. ++.|..|+.++.  .....  .....+..+.+++++.++++...+     +.|
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~--~~~~~~~~l~~~~dg~l~v~~~~~-----~~i   92 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM--HPSHHQNGHCLNKQGHLIACSHGL-----RRL   92 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE--SSCSSEEEEEECTTCCEEEEETTT-----TEE
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE--CCCCCcceeeECCCCcEEEEecCC-----CeE
Confidence            3445666788999999998 667777 899999998874  22222  344457788899988888877655     899


Q ss_pred             EEEECCCCcEEEEEee-----cCceeEEEEcCCeEEEEE--------------------cCeEEEEEcCCceeeEEEecc
Q 015198          117 IIWDDHQSRCIGEFAF-----RSDVRSVKLSRDRIVVVL--------------------EHKIYVYSFVDLKLLHQIETL  171 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~  171 (411)
                      .+||..+++.......     ...+..++++|+|.+++.                    .+.|+.++.. ++. ..+..+
T Consensus        93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~  170 (296)
T 3e5z_A           93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD  170 (296)
T ss_dssp             EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC
T ss_pred             EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC
Confidence            9999888876544331     235678999999988773                    2356666654 443 333333


Q ss_pred             CCCcceEEEccCCCceEEEEecCCCCeEEEEEcC--Ccc---eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198          172 ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LNM---IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (411)
Q Consensus       172 ~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (411)
                      ..  ....+.+++++..+ ++...++.|++|+..  +..   ...+..+...+..++++++|+++++.  ++. |.+||.
T Consensus       171 ~~--~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~  244 (296)
T 3e5z_A          171 RV--KPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTP  244 (296)
T ss_dssp             CS--SEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECT
T ss_pred             CC--CCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECC
Confidence            22  33456667777777 556678899998764  322   22333345567789999999976666  778 999997


Q ss_pred             CCCceEEEEeCCCCCcceEEEEe-CCCCCEEEEEeCCCcEEEEEccccc
Q 015198          247 VDGTRLQEVRRGVDRAEIYSIAL-SPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       247 ~~~~~~~~~~~~~~~~~v~~l~~-spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      . ++.+..+..  +.. +.+++| .|+++.|++++.++ +.-++.++++
T Consensus       245 ~-g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          245 D-GDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             T-SCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred             C-CCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence            5 888878876  444 889999 68999999888764 5555554443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.63  E-value=7.8e-12  Score=111.80  Aligned_cols=235  Identities=10%  Similarity=-0.019  Sum_probs=161.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      ..+...+.++++.++|+++++.. ++.|.+|+.+ .. .....+......+..+.+++++.++++...+     +.|..|
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~   83 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAA-----NKIGRI   83 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEE
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCCCEEEeCCCC-----CeEEEE
Confidence            34556799999999999887766 7899999987 33 3333222344567788888888777776554     889999


Q ss_pred             ECCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          120 DDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       120 d~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      |.. ++. ..+.   ....+..+++.+++.+.+   .++.|..||. +++... +...........+..++++.++++ .
T Consensus        84 ~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~-~  158 (299)
T 2z2n_A           84 TKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFITLGSDNALWFT-E  158 (299)
T ss_dssp             CTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSCEEEE-E
T ss_pred             CCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEEEcCCCCEEEE-e
Confidence            975 443 3333   345788999999887776   3678999998 554432 222212224556666777766654 4


Q ss_pred             CCCCeEEEEEcCCcceEE-EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198          194 LQRGQVRIEHFGLNMIKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (411)
Q Consensus       194 ~~dg~i~i~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (411)
                      ..++.|..++..++.... +..+...+..++++++|+++++...++. |.+||. +++.. .+........+.+++++++
T Consensus       159 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          159 NQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEIT-EFKIPTPNARPHAITAGAG  235 (299)
T ss_dssp             TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEE-EEECSSTTCCEEEEEECST
T ss_pred             CCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcEE-EEECCCCCCCceeEEECCC
Confidence            456788887764433322 2233456789999999998777777788 999998 77644 3432223457899999999


Q ss_pred             CCEEEEEeCCCcEEEEEc
Q 015198          273 VQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       273 g~~l~s~s~dg~I~vwd~  290 (411)
                      |+++++...++.|.+||.
T Consensus       236 g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          236 IDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             TCEEEEETTTTEEEEEET
T ss_pred             CCEEEeccCCceEEEECC
Confidence            997766657788999998

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.62  E-value=9.4e-13  Score=120.06  Aligned_cols=216  Identities=9%  Similarity=0.001  Sum_probs=151.2

Q ss_pred             CCcEEEEecCCCcceEEeec----CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEE
Q 015198           64 SCGFRIYNCEPFKETFRRDL----KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSV  139 (411)
Q Consensus        64 dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~  139 (411)
                      ++.|.+||.++.+.......    ..-......+.+..+..+++.. .+     +.|.+||..+++.+..+........+
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~-~~-----~~v~viD~~t~~~~~~i~~~~~p~~i   89 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN-NS-----HVIFAIDINTFKEVGRITGFTSPRYI   89 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG-GG-----TEEEEEETTTCCEEEEEECCSSEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc-CC-----CEEEEEECcccEEEEEcCCCCCCcEE
Confidence            68899999987543221100    0111223445566665555554 33     89999999999999998877788999


Q ss_pred             EEcCCeEEEE-E--cCeEEEEEcCCceeeEEEeccC------CCcceEEEccCCCceEEEEecC-CCCeEEEEEcC-Ccc
Q 015198          140 KLSRDRIVVV-L--EHKIYVYSFVDLKLLHQIETLA------NLRGLCCLSHHSSTSVLACPGL-QRGQVRIEHFG-LNM  208 (411)
Q Consensus       140 ~~~~~~~~~~-~--dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~g~-~dg~i~i~~~~-~~~  208 (411)
                      ++++++.+.+ .  ++.|.+||+.+++....+....      .+. .+++  + ++.+++ +.. .++.|.+++.. .+.
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~--~-~~~lyv-~~~~~~~~v~viD~~t~~~  164 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ--Y-GKYVYV-NCWSYQNRILKIDTETDKV  164 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE--E-TTEEEE-EECTTCCEEEEEETTTTEE
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE--E-CCEEEE-EcCCCCCEEEEEECCCCeE
Confidence            9988886665 3  7899999999999888876544      332 2334  2 334443 333 47889887765 444


Q ss_pred             eEEEeccccceeEEEecCCCCEEEEEcCC----------CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEE
Q 015198          209 IKLINAHDSHIACFTLTLDGLLLATASTR----------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV  278 (411)
Q Consensus       209 ~~~~~~~~~~i~~l~~sp~g~~l~s~s~d----------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s  278 (411)
                      +..+... .....++++|+|++++++..+          +. |.++|..+++....+... .......++|+|++++|++
T Consensus       165 ~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          165 VDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             EEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEE
T ss_pred             EEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEE
Confidence            5555543 345688999999977776654          67 999999999888777642 1236889999999999988


Q ss_pred             EeCCCcEEEEEcccccc
Q 015198          279 ASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       279 ~s~dg~I~vwd~~~~~~  295 (411)
                      +..  .|.+||..+++.
T Consensus       242 ~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          242 INN--DIWRMPVEADRV  256 (328)
T ss_dssp             ESS--SEEEEETTCSSC
T ss_pred             Ecc--EEEEEECCCCce
Confidence            765  899999987764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=5.8e-14  Score=141.76  Aligned_cols=246  Identities=11%  Similarity=0.015  Sum_probs=164.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe--CC----cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCC----
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT--SC----GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ----  110 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~--dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~----  110 (411)
                      .+|...+..++|||||++||.+.  +|    .|++||+++++... ..+  ....+..+.|+||+..|+.+..+..    
T Consensus       121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~-~~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-DVL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-EEE--EEECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc-ccc--cCcccceEEEEeCCCEEEEEEECCccccc
Confidence            34555789999999999999776  33    79999998855432 222  1222446789998866655544311    


Q ss_pred             -------CCCCeEEEEECCCCcE--EEEEe---ecCceeEEEEcCCeEEEE---E-----cCeEEEEEcCC------ce-
Q 015198          111 -------YPPTKVIIWDDHQSRC--IGEFA---FRSDVRSVKLSRDRIVVV---L-----EHKIYVYSFVD------LK-  163 (411)
Q Consensus       111 -------~~d~~i~vwd~~~~~~--~~~~~---~~~~i~~~~~~~~~~~~~---~-----dg~i~iwd~~~------~~-  163 (411)
                             .....|++|++.+++.  ...+.   +...+..+.|+||+++++   .     +..|++||+.+      ++ 
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                   1124599999988763  22233   344578999999998887   2     56899999976      43 


Q ss_pred             eeEEEeccCCCcceEEEccCCCceEEEEecCCC---CeEEEEEcCCc---ceEEEecccc--ceeEEEecCCCCEEEEEc
Q 015198          164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQR---GQVRIEHFGLN---MIKLINAHDS--HIACFTLTLDGLLLATAS  235 (411)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d---g~i~i~~~~~~---~~~~~~~~~~--~i~~l~~sp~g~~l~s~s  235 (411)
                      ....+..+..... ..+++  ++..|++.+..+   +.|.+++....   ....+..|..  .+..++|++++.++++..
T Consensus       278 ~~~~l~~~~~~~~-~~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~  354 (710)
T 2xdw_A          278 KWVKLIDNFEGEY-DYVTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL  354 (710)
T ss_dssp             CCEEEECSSSSCE-EEEEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             ceEEeeCCCCcEE-EEEec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence            3555555544332 23444  444555544333   36777776653   2355555544  688899988888888888


Q ss_pred             CCCe-EEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE-e---CCCcEEEEEccccc
Q 015198          236 TRGT-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA-S---DKGTVHIFSLRVRV  294 (411)
Q Consensus       236 ~dg~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s---~dg~I~vwd~~~~~  294 (411)
                      .++. .|++||+.+|+.+..+..  +.+.+..+.++|++..|+.. +   ..++|++||+.+++
T Consensus       355 ~~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          355 HDVKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCEEEEEEEECCCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8874 166778878887777776  56788999999999866533 2   34689999998876

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=1.7e-12  Score=118.44  Aligned_cols=246  Identities=9%  Similarity=-0.027  Sum_probs=161.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ...+...+.+++|+++|++++++. ++.|.+|+.++.+......  .....+..+.+++++.++++...+. ...+.|.+
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~  116 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFA  116 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEECTTSCEEEEECTTS-SSCCEEEE
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee--CCCCCcceEEECCCCcEEEEeCCCC-CCCceEEE
Confidence            445667789999999999887887 8999999988644322221  2345577888888887766654310 01148999


Q ss_pred             EECCCCcEEEEEe---ecCceeEEEEcCCeEEEEE---------cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          119 WDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVVL---------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       119 wd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                      ||..+++....+.   ....+.++.++|++.+++.         .+.|+.+|..+++....... ..  ....+.+++++
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~--~~~~i~~~~dg  193 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-IS--VANGIALSTDE  193 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-ES--SEEEEEECTTS
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-CC--cccceEECCCC
Confidence            9988877654443   3457899999999987772         24577777655444332222 12  23456666777


Q ss_pred             eEEEEecCCCCeEEEEEcC--CcceEEE-----ecc--ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          187 SVLACPGLQRGQVRIEHFG--LNMIKLI-----NAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~--~~~~~~~-----~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      ..|+++...++.|.+|+..  +.....+     ...  ...+..++++++|+++++...++. |.+||. +++.+..+..
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~-~g~~~~~~~~  271 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQILI  271 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEEC
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCE-EEEECC-CCCEEEEEEc
Confidence            6565555567889988763  3333221     111  136788999999998888777888 999997 6777777764


Q ss_pred             CCC----CcceEEEEeCCCCCEEEEEeCCC----cEEEEEcccc
Q 015198          258 GVD----RAEIYSIALSPNVQWLAVASDKG----TVHIFSLRVR  293 (411)
Q Consensus       258 ~~~----~~~v~~l~~spdg~~l~s~s~dg----~I~vwd~~~~  293 (411)
                      ...    ...+.+++|+||++.|+.++.++    .-.||.++.+
T Consensus       272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          272 PGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             TTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             CCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence            211    11588999999987777666553    3455555443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=2.8e-13  Score=124.33  Aligned_cols=223  Identities=15%  Similarity=0.146  Sum_probs=146.6

Q ss_pred             CCeEEEEEcCCCCEEEEEe-C---Cc--EEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCC-C-------
Q 015198           45 IELISVSWNQDYGCFAAGT-S---CG--FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS-Q-------  110 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~-------  110 (411)
                      ..+..++|+|||++|+... +   +.  |.+|++++.+.....   .... +..+.|+|++..++....+. .       
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~---~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~  134 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL---EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFE  134 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE---EESE-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE---cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence            4578899999999999877 3   34  666677664332222   2233 77888999886555443110 0       


Q ss_pred             --------------CCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-E--c------C---eEEEEEcCCcee
Q 015198          111 --------------YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-L--E------H---KIYVYSFVDLKL  164 (411)
Q Consensus       111 --------------~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~--d------g---~i~iwd~~~~~~  164 (411)
                                    .....|.+||+.+++.+..+... .+..+.|+|++ +++ .  +      .   .|+++|  +++.
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~  210 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE  210 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce
Confidence                          00267999999988874555444 88999999999 555 2  1      2   455555  5554


Q ss_pred             eEEEeccCCCcceEEEccCCCceEEEEecCC-------CCeEEEEEcCCcceEEEeccccceeE-EEecCCCCEEEEEcC
Q 015198          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQ-------RGQVRIEHFGLNMIKLINAHDSHIAC-FTLTLDGLLLATAST  236 (411)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-------dg~i~i~~~~~~~~~~~~~~~~~i~~-l~~sp~g~~l~s~s~  236 (411)
                      . .+..+ .  ....+  ++++..|++.+..       ...|.+++ .++.......+...+.. +.|+ ++ ++++++.
T Consensus       211 ~-~l~~~-~--~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~  281 (347)
T 2gop_A          211 E-KMFEK-V--SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFE  281 (347)
T ss_dssp             E-EEEEE-E--SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEE
T ss_pred             E-EeccC-c--ceeeE--CCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc-Cc-EEEEEec
Confidence            3 33333 2  33344  5566667665533       24677777 55444444556777886 9999 88 8999999


Q ss_pred             CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcE-EEEEcc
Q 015198          237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV-HIFSLR  291 (411)
Q Consensus       237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I-~vwd~~  291 (411)
                      ++. ++|| +.+++.. .+..  +...|.+++|+|  .++++++.++.. .||.++
T Consensus       282 ~~~-~~l~-~~~g~~~-~~~~--~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          282 EGS-VNLY-IWDGEIK-PIAK--GRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             TTE-EEEE-EESSSEE-EEEC--SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             CCc-EEEE-EcCCceE-EEec--CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            998 9999 8766654 3433  456899999999  677777777765 788876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.60  E-value=7.7e-14  Score=129.01  Aligned_cols=235  Identities=12%  Similarity=0.040  Sum_probs=153.9

Q ss_pred             EEEEcCCCCEEEEEe-----------CCcEEEEecCCCcceEEeecCC----CCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKS----GGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        49 ~l~~s~~g~~la~g~-----------dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      .++|+|||++|+++.           ++.|.+||..+.+......+..    +......+.+++++.+++.+...   .+
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~---~~  130 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS---PA  130 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES---SS
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC---CC
Confidence            899999999999874           4569999998766555444321    11234457788888766554321   12


Q ss_pred             CeEEEEECCCCcEEEE-EeecCceeEEEEcCCe--EEEE--EcCeEEEEEcCC-ceeeEEEe------ccCCCcceEEEc
Q 015198          114 TKVIIWDDHQSRCIGE-FAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVD-LKLLHQIE------TLANLRGLCCLS  181 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~--~dg~i~iwd~~~-~~~~~~~~------~~~~~~~~~~~~  181 (411)
                      +.|.+||+.+++.+.. +..... ..+.+.|++  .++.  .||.+.+|++.. ++......      ....+   ..+.
T Consensus       131 ~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~---~~~~  206 (361)
T 2oiz_A          131 TSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP---IFIA  206 (361)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC---BCSC
T ss_pred             CeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc---eEEE
Confidence            8999999999988877 554332 234566654  3333  688899998864 55442221      11111   1111


Q ss_pred             cCCCceEEEEecCCCCeEEEEEcCCcceEEEe---cc----------ccceeEEEecCCCCEEEEEcC-----------C
Q 015198          182 HHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN---AH----------DSHIACFTLTLDGLLLATAST-----------R  237 (411)
Q Consensus       182 ~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~---~~----------~~~i~~l~~sp~g~~l~s~s~-----------d  237 (411)
                      +.+++..+++.. .++.|.+++........+.   ..          ......++|+|+++.++++..           .
T Consensus       207 ~~~~g~~~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~  285 (361)
T 2oiz_A          207 PALDKDKAHFVS-YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA  285 (361)
T ss_dssp             CEECSSEEEEEB-TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred             ecccCCEEEEEe-CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence            222333444433 5788888776543322211   10          011223789999887776543           3


Q ss_pred             CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc--ccCC
Q 015198          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR--VVGE  297 (411)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~--~~~~  297 (411)
                      +. |.+||+.+++.+.++..  +.  +.+++|+|||++|++++. +.|.|||..++  +...
T Consensus       286 ~~-v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~  341 (361)
T 2oiz_A          286 AE-IWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLR  341 (361)
T ss_dssp             SE-EEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEE
T ss_pred             ce-EEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeE
Confidence            46 99999999999999987  33  899999999999998887 99999999998  6553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.60  E-value=2.6e-13  Score=126.66  Aligned_cols=233  Identities=11%  Similarity=-0.026  Sum_probs=147.0

Q ss_pred             EEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEE-------------------EeccCCeEEEEec---
Q 015198           49 SVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVE-------------------MLFRCNILALVGA---  105 (411)
Q Consensus        49 ~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~s~---  105 (411)
                      .+.|+|||++|+.+. ++.|.+|++++.+.......+..  ....                   ..++|++..++..   
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  162 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY  162 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence            478999999999888 88899999987554333322122  1111                   1233433332221   


Q ss_pred             --CCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcC-CeEEEE--Ec-------CeEEEEEcCCceeeEEEeccCC
Q 015198          106 --GDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR-DRIVVV--LE-------HKIYVYSFVDLKLLHQIETLAN  173 (411)
Q Consensus       106 --~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~--~d-------g~i~iwd~~~~~~~~~~~~~~~  173 (411)
                        ..+     ..|.+||+.+++......+...+..+.|+| ++..++  .+       ..|++||+..++.. .+..+..
T Consensus       163 ~~~~~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~  236 (396)
T 3c5m_A          163 HTNPT-----CRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE  236 (396)
T ss_dssp             HTCCC-----EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT
T ss_pred             cCCCc-----ceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC
Confidence              222     789999999988776666778899999999 777555  21       46899998665432 2222211


Q ss_pred             CcceEEEccCCCceEEEEecCCC----CeEEEEEcCCcceEEEeccccceeEEEecC-CCCEEEEEc-------------
Q 015198          174 LRGLCCLSHHSSTSVLACPGLQR----GQVRIEHFGLNMIKLINAHDSHIACFTLTL-DGLLLATAS-------------  235 (411)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~d----g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s-------------  235 (411)
                      ...+..+.+++++..|++.+..+    +.|++|+........+..... .. +.|+| +|++|++++             
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence            22345566777777666653222    448888876655444433222 23 88999 999888754             


Q ss_pred             ---CCCeEEEEEECCCCceEEEEeCCCCCc-----------ceEEEEeCCCCCEEEEEeC-CCcEEEEE--cccccc
Q 015198          236 ---TRGTLIRIFNTVDGTRLQEVRRGVDRA-----------EIYSIALSPNVQWLAVASD-KGTVHIFS--LRVRVV  295 (411)
Q Consensus       236 ---~dg~~I~vwd~~~~~~~~~~~~~~~~~-----------~v~~l~~spdg~~l~s~s~-dg~I~vwd--~~~~~~  295 (411)
                         .+.. |++||+.+++.. .+..  +..           .+..++|+|||+.|+.++. ++...||.  +.+++.
T Consensus       315 ~~~~~~~-i~~~d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          315 NIENDPF-LYVLNTKAKSAQ-KLCK--HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             CCCCCCE-EEEEETTTTBCC-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred             ccCCCCc-EEEEecccCceE-EccC--CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence               2467 999999887754 3433  222           2566789999998887765 45555555  445443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.60  E-value=7.7e-14  Score=141.52  Aligned_cols=192  Identities=10%  Similarity=0.075  Sum_probs=136.0

Q ss_pred             EEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecC-----ceeEEEEcCCeEEEE--Ec----------
Q 015198           90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRS-----DVRSVKLSRDRIVVV--LE----------  151 (411)
Q Consensus        90 ~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~-----~i~~~~~~~~~~~~~--~d----------  151 (411)
                      ...+.|++++.+++++  +     +.|++||+.++++...+. +..     ....+.|+||++.++  .+          
T Consensus        19 ~~~~~w~~dg~~~~~~--~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--E-----NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCEEECSSSEEEEEE--T-----TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             ccccEECCCCcEEEEc--C-----CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            3467899999988886  5     999999999999877766 321     234588999999887  22          


Q ss_pred             CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEe--ccccce----------
Q 015198          152 HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHI----------  219 (411)
Q Consensus       152 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~--~~~~~i----------  219 (411)
                      +.+++||+.+++... +..+..  ......++|+|+.||++  .++.|++|+........+.  ++...+          
T Consensus        92 ~~~~~~d~~~~~~~~-l~~~~~--~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT-EERIPN--NTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (740)
T ss_dssp             EEEEEEETTTTEECC-SSCCCT--TEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             eEEEEEECCCCcEEE-cccCCC--cceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence            678899999987653 333333  45667777788888886  5789999887654444332  222212          


Q ss_pred             -------eEEEecCCCCEEEEEcCCC------------------------------------eEEEEEECCC---Cc--e
Q 015198          220 -------ACFTLTLDGLLLATASTRG------------------------------------TLIRIFNTVD---GT--R  251 (411)
Q Consensus       220 -------~~l~~sp~g~~l~s~s~dg------------------------------------~~I~vwd~~~---~~--~  251 (411)
                             ..+.|||||+.||.++.|.                                    . |++||+.+   ++  .
T Consensus       167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~-l~v~d~~~~~~~~~~~  245 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK-FFVVNTDSLSSVTNAT  245 (740)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE-EEEEETTSCCSSSCCC
T ss_pred             chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE-EEEEECCCCCCCCcce
Confidence                   3489999999998875221                                    4 88899988   73  2


Q ss_pred             EEEEeCC----CCCcceEEEEeCCCCCEEEEEeC----CCcEEEEEccccc
Q 015198          252 LQEVRRG----VDRAEIYSIALSPNVQWLAVASD----KGTVHIFSLRVRV  294 (411)
Q Consensus       252 ~~~~~~~----~~~~~v~~l~~spdg~~l~s~s~----dg~I~vwd~~~~~  294 (411)
                      ...+...    .+...+..++|+|||++++....    +..|++||+.+++
T Consensus       246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            3344321    15567999999999997765543    3369999999987

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.57  E-value=1.7e-12  Score=131.03  Aligned_cols=239  Identities=6%  Similarity=-0.086  Sum_probs=152.1

Q ss_pred             CCCCEEEEEe--CCc--EEEEecC--CCcceEEe---ec-CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           54 QDYGCFAAGT--SCG--FRIYNCE--PFKETFRR---DL-KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        54 ~~g~~la~g~--dg~--i~iw~~~--~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      |+|++++...  .+.  -.||..+  ........   .+ ..+...+..+.|+|++..++.+..+.......|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8899888655  222  2556554  22221111   11 1344567788999998777654332000113899999999


Q ss_pred             CcEEEEEeecCceeEEEEcCCeEEEE---EcCe----------------EEEEEcCCceee--EEEeccCCCcceEEEcc
Q 015198          124 SRCIGEFAFRSDVRSVKLSRDRIVVV---LEHK----------------IYVYSFVDLKLL--HQIETLANLRGLCCLSH  182 (411)
Q Consensus       124 ~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~----------------i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~  182 (411)
                      ++.+........+..++|+||++.++   .++.                |++|++.+++..  ..+...........+.+
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~  240 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL  240 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence            98876544333477899999998777   3333                999999877532  22333333334566777


Q ss_pred             CCCceEEEEecCC----CCeEEEEEcCC------c--ceEEEeccccceeEEEecCCCCEEEEEcC----CCeEEEEEEC
Q 015198          183 HSSTSVLACPGLQ----RGQVRIEHFGL------N--MIKLINAHDSHIACFTLTLDGLLLATAST----RGTLIRIFNT  246 (411)
Q Consensus       183 ~~~~~~l~~~g~~----dg~i~i~~~~~------~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~----dg~~I~vwd~  246 (411)
                      ++++++|++....    +..|++++...      .  ....+..+...+.. .|+|+|+.|+..+.    ... |.+||+
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~-l~~~d~  318 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR-LINIDF  318 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE-EEEEET
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE-EEEEeC
Confidence            8888888765421    56788887764      2  46667777666655 48899987766554    236 999999


Q ss_pred             CCCc--eEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCc--EEEEEccccc
Q 015198          247 VDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT--VHIFSLRVRV  294 (411)
Q Consensus       247 ~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~--I~vwd~~~~~  294 (411)
                      .++.  ....+..+.....+..++|++++.++++...|+.  |++|++.+++
T Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA  370 (710)
T ss_dssp             TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence            8774  2345554322236888999988888888888885  5566665554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=2.4e-12  Score=114.23  Aligned_cols=213  Identities=10%  Similarity=0.019  Sum_probs=158.2

Q ss_pred             CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee-
Q 015198           55 DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF-  132 (411)
Q Consensus        55 ~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~-  132 (411)
                      .+++|++++ ++.|.+||.++++.+.+...+. ...+..+.+.+++.++++.  +     +.|..||. +++.+..+.. 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~-~~~~~~~~~~pdG~ilvs~--~-----~~V~~~d~-~G~~~W~~~~~   74 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK-GWECNSVAATKAGEILFSY--S-----KGAKMITR-DGRELWNIAAP   74 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCT-TCCCCEEEECTTSCEEEEC--B-----SEEEEECT-TSCEEEEEECC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc-cCCCcCeEECCCCCEEEeC--C-----CCEEEECC-CCCEEEEEcCC
Confidence            357888888 9999999998878777765422 1345566778888888843  3     88999998 8999999884 


Q ss_pred             -cCceeEEEEcCCeEEEE-E---cCeEEEEEcCCceeeEEEeccCC---C-cceEEEccCCCceEEEEecCCCCeEEEEE
Q 015198          133 -RSDVRSVKLSRDRIVVV-L---EHKIYVYSFVDLKLLHQIETLAN---L-RGLCCLSHHSSTSVLACPGLQRGQVRIEH  203 (411)
Q Consensus       133 -~~~i~~~~~~~~~~~~~-~---dg~i~iwd~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~g~~dg~i~i~~  203 (411)
                       ...+.++.+.+++.+++ .   ++.|..+|. +++.+..+.....   . .....+.+.+++.++++ ...++.|..++
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~-~~~~~~v~~~d  152 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP-LFATSEVREIA  152 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE-ETTTTEEEEEC
T ss_pred             CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEE-ecCCCEEEEEC
Confidence             35788999999999888 2   456777774 7888877753211   0 01122334566777765 55789999999


Q ss_pred             cCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC----CCcceEEEEeCCCCCEEEEE
Q 015198          204 FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV----DRAEIYSIALSPNVQWLAVA  279 (411)
Q Consensus       204 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~s~  279 (411)
                      ..++.+..+... .....+.+.++|++++++..++. |..+|..+|+.+.++....    .-..+..++..++|.++++.
T Consensus       153 ~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          153 PNGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             TTSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CCCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            888888887765 44567788899999999888888 9999999999999987421    11247888999999988876


Q ss_pred             e
Q 015198          280 S  280 (411)
Q Consensus       280 s  280 (411)
                      .
T Consensus       231 ~  231 (276)
T 3no2_A          231 W  231 (276)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.56  E-value=8.8e-13  Score=116.42  Aligned_cols=236  Identities=8%  Similarity=-0.066  Sum_probs=155.8

Q ss_pred             CeEEEEEcCCCCEEE-EEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           46 ELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        46 ~V~~l~~s~~g~~la-~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      ...+++++++|++++ +.. ++.|.+|+..+..... ... .+......+.+++++.++++.. +     +.|.+||...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v~~~-~-----~~i~~~d~~~   96 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPF-NGLYQPQGLAVDGAGTVYVTDF-N-----NRVVTLAAGS   96 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCC-CSCCSCCCEEECTTCCEEEEET-T-----TEEEEECTTC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-Eee-CCcCCcceeEECCCCCEEEEcC-C-----CEEEEEeCCC
Confidence            678999999999776 434 8899999876533221 111 2223455677788777666655 5     8999999766


Q ss_pred             CcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCe
Q 015198          124 SRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (411)
Q Consensus       124 ~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (411)
                      +.. ..+.  ....+..+++++++.+++   .++.|.+|+..+............  ....+..++++.++++ ...++.
T Consensus        97 ~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~p~~i~~~~~g~l~v~-~~~~~~  172 (270)
T 1rwi_B           97 NNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLN--DPDGVAVDNSGNVYVT-DTDNNR  172 (270)
T ss_dssp             SCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCC--SCCCEEECTTCCEEEE-EGGGTE
T ss_pred             ceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCC--CceeEEEeCCCCEEEE-ECCCCE
Confidence            543 2332  235788999999987666   367899997655433221111112  2233444555555544 445678


Q ss_pred             EEEEEcCCcceEEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEE
Q 015198          199 VRIEHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA  277 (411)
Q Consensus       199 i~i~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  277 (411)
                      |.+++..+...... ..+...+..++++++|.++++...++. |.+||....... .+... +...+.+++++++|++++
T Consensus       173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~-~~~~~-~~~~p~~i~~~~~g~l~v  249 (270)
T 1rwi_B          173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTST-VLPFT-GLNTPLAVAVDSDRTVYV  249 (270)
T ss_dssp             EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCE-ECCCC-SCSCEEEEEECTTCCEEE
T ss_pred             EEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCcce-eeccC-CCCCceeEEECCCCCEEE
Confidence            88888776544332 223366789999999988887777888 999998655433 22211 234689999999999888


Q ss_pred             EEeCCCcEEEEEccccccC
Q 015198          278 VASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       278 s~s~dg~I~vwd~~~~~~~  296 (411)
                      +...++.|+++++...+..
T Consensus       250 ~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          250 ADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             EEGGGTEEEEECCCGGGSC
T ss_pred             EECCCCEEEEEcCCCcccc
Confidence            8889999999999887654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.55  E-value=7.5e-12  Score=112.94  Aligned_cols=237  Identities=9%  Similarity=0.020  Sum_probs=158.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEE-------Ee-CCcEEEEecCCCcceEEeec---CCCCEEEEEEeccCC-eEEEEecCCCC
Q 015198           42 VDEIELISVSWNQDYGCFAA-------GT-SCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCN-ILALVGAGDNS  109 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~-------g~-dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~l~s~~~d~  109 (411)
                      +.-....+++|+++|.++++       +. ++.|.+|+..+.+.. ....   ......+..+.++++ +.++++...  
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~--   91 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVADMR--   91 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEETT--
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEEEEECC--
Confidence            33445689999999988887       45 899999997764432 2211   012245677888888 776666543  


Q ss_pred             CCCCCeEEEEECCCCcEEEE-Ee-----ecCceeEEEEcCCeEEEE-E--c---------------CeEEEEEcCCceee
Q 015198          110 QYPPTKVIIWDDHQSRCIGE-FA-----FRSDVRSVKLSRDRIVVV-L--E---------------HKIYVYSFVDLKLL  165 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~-~~-----~~~~i~~~~~~~~~~~~~-~--d---------------g~i~iwd~~~~~~~  165 (411)
                          +.|.+||.. ++.... ..     ....+.++++++++.+.+ .  +               +.|..||.. ++..
T Consensus        92 ----~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~  165 (314)
T 1pjx_A           92 ----LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI  165 (314)
T ss_dssp             ----TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred             ----CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence                579999987 765433 22     123588999999998777 2  2               467777765 5544


Q ss_pred             EEEeccCCCcceEEEccC----CCceEEEEecCCCCeEEEEEcC--Cc-----ceEEEeccc-cceeEEEecCCCCEEEE
Q 015198          166 HQIETLANLRGLCCLSHH----SSTSVLACPGLQRGQVRIEHFG--LN-----MIKLINAHD-SHIACFTLTLDGLLLAT  233 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~----~~~~~l~~~g~~dg~i~i~~~~--~~-----~~~~~~~~~-~~i~~l~~sp~g~~l~s  233 (411)
                      ........   ...+.++    +++..++++...++.|.+|+..  +.     ....+..+. ..+..++++++|+++++
T Consensus       166 ~~~~~~~~---~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~  242 (314)
T 1pjx_A          166 QVDTAFQF---PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             EEEEEESS---EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred             EeccCCCC---cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEE
Confidence            33322221   2333444    6776665555567888887654  22     112222333 56788999999998888


Q ss_pred             EcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEE-EeCCCcEEEEEcccc
Q 015198          234 ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV-ASDKGTVHIFSLRVR  293 (411)
Q Consensus       234 ~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-~s~dg~I~vwd~~~~  293 (411)
                      ...++. |.+||..+++.+..+..  +...+.+++|+++|+.|++ ...++.|..|++...
T Consensus       243 ~~~~~~-i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          243 NWGSSH-IEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EETTTE-EEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EcCCCE-EEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            777888 99999887887777765  4467899999999995554 445678999998754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.55  E-value=2.4e-13  Score=136.13  Aligned_cols=246  Identities=10%  Similarity=-0.018  Sum_probs=151.1

Q ss_pred             ccCCCCCCeE---------EEEEc--CCCCE-EEEEeC--CcEEEEecC--CCcceEEeecCC-----CCEEEEEEeccC
Q 015198           39 FSDVDEIELI---------SVSWN--QDYGC-FAAGTS--CGFRIYNCE--PFKETFRRDLKS-----GGFRIVEMLFRC   97 (411)
Q Consensus        39 ~~~~h~~~V~---------~l~~s--~~g~~-la~g~d--g~i~iw~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~   97 (411)
                      ....|...+.         ...|+  |||++ |+.+.+  ..|.+++++  .......  +..     +...+..+.|+|
T Consensus        62 ~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~--l~~~~~~~~~~~~~~~~~sp  139 (662)
T 3azo_A           62 SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP--LTPVSAVGGGLRWADPVLLP  139 (662)
T ss_dssp             ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE--CSCCCCSTTCEEEEEEEEET
T ss_pred             eeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe--ccCCccCCCCccccCcEECC
Confidence            3445555555         56565  99998 887774  445555544  1022222  223     567788899999


Q ss_pred             CeEEEEecCCCCC-----CCCCeEEEEECCC------CcEEEEE-eecCceeEEEEcCCeEEEE---Ec--------CeE
Q 015198           98 NILALVGAGDNSQ-----YPPTKVIIWDDHQ------SRCIGEF-AFRSDVRSVKLSRDRIVVV---LE--------HKI  154 (411)
Q Consensus        98 ~~~~l~s~~~d~~-----~~d~~i~vwd~~~------~~~~~~~-~~~~~i~~~~~~~~~~~~~---~d--------g~i  154 (411)
                      ++..|+..+.+..     .....|++||+.+      ++..... .+...+..+.|+|||+.++   .+        ..|
T Consensus       140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i  219 (662)
T 3azo_A          140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL  219 (662)
T ss_dssp             TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred             CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence            9877766554200     0114899999988      6654444 4456788899999998877   23        379


Q ss_pred             EEEEcC-Cc---eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE--EEcCCcceEEEeccccc---------e
Q 015198          155 YVYSFV-DL---KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDSH---------I  219 (411)
Q Consensus       155 ~iwd~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~---------i  219 (411)
                      ++||+. ++   +.......+..  ....+.+++++.++ +++..++...|  ++........+..+...         +
T Consensus       220 ~~~d~~~~g~~~~~~~l~~~~~~--~~~~~~~spdg~l~-~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~  296 (662)
T 3azo_A          220 KTARVTEDGRFADTRTLLGGPEE--AIAQAEWAPDGSLI-VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGM  296 (662)
T ss_dssp             EEEEECTTSCEEEEEEEEEETTB--CEEEEEECTTSCEE-EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTC
T ss_pred             EEEEECCCCcccccEEeCCCCCc--eEcceEECCCCeEE-EEECCCCCeEEEEEECCCCceeecccccccccCccccccC
Confidence            999998 56   33333333333  44556667777744 45667784444  55434433333333222         4


Q ss_pred             eEEEecCCCCEEEEEcCCCeEEEEE--ECCCCceEEEEeCCCCCcceEEE-EeCCCCCEEEEEeCCCc--EEEEEccccc
Q 015198          220 ACFTLTLDGLLLATASTRGTLIRIF--NTVDGTRLQEVRRGVDRAEIYSI-ALSPNVQWLAVASDKGT--VHIFSLRVRV  294 (411)
Q Consensus       220 ~~l~~sp~g~~l~s~s~dg~~I~vw--d~~~~~~~~~~~~~~~~~~v~~l-~~spdg~~l~s~s~dg~--I~vwd~~~~~  294 (411)
                      ..++|+|+++++++++. +. ++||  |+.+++ +..+..  +...+..+ +++.+.-++++++.+..  |.+||+.+++
T Consensus       297 ~~~~~~~~~~~~~~~~~-~~-~~l~~~d~~~~~-~~~l~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          297 RWFAPLANGLIAVVHGK-GA-AVLGILDPESGE-LVDAAG--PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             CSEEECTTSCEEEEEBS-SS-CEEEEEETTTTE-EEECCS--SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             ceEeEeCCCEEEEEEEc-Cc-cEEEEEECCCCc-EEEecC--CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            67899999999999998 88 8888  655554 556655  55567766 55443334445555544  5555665655

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.54  E-value=4.1e-12  Score=115.79  Aligned_cols=236  Identities=11%  Similarity=-0.024  Sum_probs=159.6

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      .....+.+.. ++++++.. ++.|.+||..+.+.+....   .......+.+++++.++++...+     +.|.+||..+
T Consensus        44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~---~~~~p~~i~~~~~g~lyv~~~~~-----~~v~~iD~~t  114 (328)
T 3dsm_A           44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT---GFTSPRYIHFLSDEKAYVTQIWD-----YRIFIINPKT  114 (328)
T ss_dssp             SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE---CCSSEEEEEEEETTEEEEEEBSC-----SEEEEEETTT
T ss_pred             ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC---CCCCCcEEEEeCCCeEEEEECCC-----CeEEEEECCC
Confidence            3456777743 44444444 8999999999866544442   23345566776777777776455     9999999999


Q ss_pred             CcEEEEEeecC------ceeEEEEcCCeEEEEE---cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          124 SRCIGEFAFRS------DVRSVKLSRDRIVVVL---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       124 ~~~~~~~~~~~------~i~~~~~~~~~~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      ++....+....      ....+++.....+++.   ++.|.++|+.+++.+..+.....+   ..+..++++.+++.+..
T Consensus       115 ~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p---~~i~~~~dG~l~v~~~~  191 (328)
T 3dsm_A          115 YEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP---TSLVMDKYNKMWTITDG  191 (328)
T ss_dssp             TEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB---CCCEECTTSEEEEEBCC
T ss_pred             CeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc---cceEEcCCCCEEEEECC
Confidence            99888887544      6677888444444442   789999999999988888764433   23444666776655332


Q ss_pred             C---------CCeEEEEEcCC-cceEEEecc-ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcc
Q 015198          195 Q---------RGQVRIEHFGL-NMIKLINAH-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE  263 (411)
Q Consensus       195 ~---------dg~i~i~~~~~-~~~~~~~~~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~  263 (411)
                      .         .+.|.+++... +....+... ......++|+|++++|+++..  . |.+||..+++.............
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~~~~~~~~~~~  268 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPVRPFLEFRDTK  268 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCSSCSBCCCSSC
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceeeeeeecCCCCc
Confidence            2         26788877654 444455432 236789999999998888765  7 99999988875321111001346


Q ss_pred             eEEEEeCC-CCCEEEEE----eCCCcEEEEEccccccC
Q 015198          264 IYSIALSP-NVQWLAVA----SDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       264 v~~l~~sp-dg~~l~s~----s~dg~I~vwd~~~~~~~  296 (411)
                      ...++++| +++++++.    ..++.|.+||.+ ++..
T Consensus       269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            88999999 55555555    567899999998 6644

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.54  E-value=4e-12  Score=113.96  Aligned_cols=193  Identities=8%  Similarity=0.002  Sum_probs=131.8

Q ss_pred             CCEEEEEEeccCCeE-EEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-E--cCeEEEEEcC
Q 015198           86 GGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-L--EHKIYVYSFV  160 (411)
Q Consensus        86 ~~~~~~~~~~~~~~~-~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~--dg~i~iwd~~  160 (411)
                      +......+.|++++. +++++..+     +.|..||..++  ...+. +...+.++++++++.+++ .  ++.|.+||..
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~-----~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQ-----NRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             CCccccCCeEeCCCCEEEEEeCCC-----CEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            334456778888875 55665555     89999998877  55555 567789999999998777 3  5789999998


Q ss_pred             CceeeEEEeccCCC--cceEEEccCCCceEEEEe---cC-------------CCCeEEEEEcCCcceEEEeccccceeEE
Q 015198          161 DLKLLHQIETLANL--RGLCCLSHHSSTSVLACP---GL-------------QRGQVRIEHFGLNMIKLINAHDSHIACF  222 (411)
Q Consensus       161 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~---g~-------------~dg~i~i~~~~~~~~~~~~~~~~~i~~l  222 (411)
                      +++...........  .....+..++++.++++.   |.             ..+.|..++.. .....+..+......+
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi  177 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGL  177 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccE
Confidence            87755433221110  122345556677766642   21             12345555544 3445555666777899


Q ss_pred             EecCCCCEEEEEcCCCeEEEEEECC-CCce---EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          223 TLTLDGLLLATASTRGTLIRIFNTV-DGTR---LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       223 ~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      +|+|+|++|++.+.++. |++||+. +++.   ...+ . .+...+..++++++|+++++.  ++.|.+|+.+
T Consensus       178 ~~s~dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          178 AFLPSGNLLVSDTGDNA-THRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             EECTTSCEEEEETTTTE-EEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             EECCCCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            99999998877777888 9999987 5554   3344 2 245567789999999976665  7789999976

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.54  E-value=1.1e-12  Score=121.36  Aligned_cols=257  Identities=9%  Similarity=-0.000  Sum_probs=160.7

Q ss_pred             CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCC-----CCCCCeEEEEECCCCcEEEEEee------
Q 015198           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS-----QYPPTKVIIWDDHQSRCIGEFAF------  132 (411)
Q Consensus        64 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~~~d~~i~vwd~~~~~~~~~~~~------  132 (411)
                      |+.|.+||..+.+......  .+.. . .+.+++++..+..+....     .-.++.|.+||+.+++.+.++..      
T Consensus        30 d~~v~v~D~~t~~~~~~i~--~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~  105 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVP--TAFN-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ  105 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEE--CCEE-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred             cCeEEEEECCCCeEEEEec--CCCC-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence            6789999988766544332  3433 3 888999886655543100     00127899999999999988873      


Q ss_pred             -cCceeEEEEcCCeEEEE---E--cCeEEEEEcCCceeeEE-EeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC
Q 015198          133 -RSDVRSVKLSRDRIVVV---L--EHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG  205 (411)
Q Consensus       133 -~~~i~~~~~~~~~~~~~---~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~  205 (411)
                       ......++++||+++++   .  ++.|.+||+.+++.+.. +.....  ....+.+.+...+++  .+.||.+.++...
T Consensus       106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~~~--~~~dg~~~~v~~~  181 (361)
T 2oiz_A          106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSFMT--ICGDGGLLTINLG  181 (361)
T ss_dssp             BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEEEE--EETTSSEEEEEEC
T ss_pred             cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeEEE--ECCCCcEEEEEEC
Confidence             24567899999998776   2  57899999999988776 443211  123344544333333  3357777775543


Q ss_pred             --CcceEE------EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce--EEEEeCCC--------CCcceEEE
Q 015198          206 --LNMIKL------INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR--LQEVRRGV--------DRAEIYSI  267 (411)
Q Consensus       206 --~~~~~~------~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~--------~~~~v~~l  267 (411)
                        ++....      +..+..++ .+.+++++..++..+.++. |.++|+.....  +..+....        .......+
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~  259 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGN-VYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV  259 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSE-EEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred             CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCe-EEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence              332211      11222222 2334677877777888898 99999875542  22222100        00111237


Q ss_pred             EeCCCCCEEEEEeC-----------CCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccc
Q 015198          268 ALSPNVQWLAVASD-----------KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLS  336 (411)
Q Consensus       268 ~~spdg~~l~s~s~-----------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (411)
                      +|+||++.++++..           .+.|.+||+.+++..                                        
T Consensus       260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v----------------------------------------  299 (361)
T 2oiz_A          260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV----------------------------------------  299 (361)
T ss_dssp             EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE----------------------------------------
T ss_pred             EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE----------------------------------------
Confidence            89999888877643           347999999988753                                        


Q ss_pred             ccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          337 FMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                      .++.++.  ...++|+++ +.|++++ ++.|.+|....
T Consensus       300 ----------------~~i~~~~--p~~ia~spdg~~l~v~n-~~~v~v~D~~t  334 (361)
T 2oiz_A          300 ----------------ARIPGRD--ALSMTIDQQRNLMLTLD-GGNVNVYDISQ  334 (361)
T ss_dssp             ----------------EEEECTT--CCEEEEETTTTEEEEEC-SSCEEEEECSS
T ss_pred             ----------------EEEecCC--eeEEEECCCCCEEEEeC-CCeEEEEECCC
Confidence                            2455544  556789998 5555555 59999996554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.54  E-value=1.3e-10  Score=103.82  Aligned_cols=233  Identities=7%  Similarity=-0.046  Sum_probs=160.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      .....+.++++.++|+++++.. ++.|.+|+.+ .+ .....+......+..+.+.+++.++++...+     +.|..+|
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~v~~~d   89 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-IKEFEVPTPDAKVMCLIVSSLGDIWFTENGA-----NKIGKLS   89 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEEC
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-eEEEECCCCCCcceeEEECCCCCEEEEecCC-----CeEEEEC
Confidence            3456789999999999888776 8999999977 23 2333333334567778888888777776554     8899999


Q ss_pred             CCCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          121 DHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       121 ~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      .. ++.. .+.   ....+.++++.+++.+.+   .++.|..+|.. ++.. .+...........+..++++.+.++ ..
T Consensus        90 ~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~-~~  164 (300)
T 2qc5_A           90 KK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFT-EN  164 (300)
T ss_dssp             TT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEE-ET
T ss_pred             CC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEE-ec
Confidence            77 6543 333   246788999999887766   26789999987 5544 2322212224556666777775544 44


Q ss_pred             CCCeEEEEEcCCcceEEEe--ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198          195 QRGQVRIEHFGLNMIKLIN--AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (411)
Q Consensus       195 ~dg~i~i~~~~~~~~~~~~--~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (411)
                      .++.|..++..++... +.  .+...+..++++++|+++++....+. |.+||. +++... +........+.+++++++
T Consensus       165 ~~~~i~~~~~~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~  240 (300)
T 2qc5_A          165 QNNSIGRITNTGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISE-YDIPTPNARPHAITAGKN  240 (300)
T ss_dssp             TTTEEEEECTTCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECST
T ss_pred             CCCeEEEECCCCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEE-EECCCCCCCceEEEECCC
Confidence            5677887776544333 32  33456889999999988777777788 999998 565443 222113456899999999


Q ss_pred             CCEEEEEeCCCcEEEEEc
Q 015198          273 VQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       273 g~~l~s~s~dg~I~vwd~  290 (411)
                      |+++++...++.|..|+.
T Consensus       241 g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          241 SEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             TCEEEEETTTTEEEEECT
T ss_pred             CCEEEeccCCCeEEEECC
Confidence            997766666788999987

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.53  E-value=1.4e-11  Score=120.06  Aligned_cols=228  Identities=11%  Similarity=0.064  Sum_probs=155.4

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC--CCcEEEEEee
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRCIGEFAF  132 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~--~~~~~~~~~~  132 (411)
                      +.++++.. ++.|.++|.++.+.+.....   ......+.+++++.++..++.+     +.|.+||+.  +++.+..+..
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~---g~~p~~v~~SpDGr~lyv~~~d-----g~V~viD~~~~t~~~v~~i~~  238 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAEIKI  238 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCCEEEEEEC
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeC---CCCccceEECCCCCEEEEEcCC-----CeEEEEECCCCCCcEeEEEec
Confidence            34444555 89999999998665554443   2234477899998777666666     999999985  8888888886


Q ss_pred             cCceeEEEEc----CCeEEEE----EcCeEEEEEcCCceeeEEEeccCC---------CcceEEEccCCCceEEEEecCC
Q 015198          133 RSDVRSVKLS----RDRIVVV----LEHKIYVYSFVDLKLLHQIETLAN---------LRGLCCLSHHSSTSVLACPGLQ  195 (411)
Q Consensus       133 ~~~i~~~~~~----~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~g~~  195 (411)
                      ......++|+    |||++++    .++.|.++|..+.+.+..+.....         ...+..+..++++..+++.-..
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            6677899999    6987766    679999999999999888764211         1123344444444444444567


Q ss_pred             CCeEEEEEcCCcc---eEEEeccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEEEEeC-CC--CCcceEEEE
Q 015198          196 RGQVRIEHFGLNM---IKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRR-GV--DRAEIYSIA  268 (411)
Q Consensus       196 dg~i~i~~~~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~-~~--~~~~v~~l~  268 (411)
                      .|.|.+.+.....   +..+ ........+.|+|+|++|+++. .++. |.++|+.+++.+..+.. +.  |.+.-..+ 
T Consensus       319 ~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-  395 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGRGANF-  395 (567)
T ss_dssp             TTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSSBCCTTCEEE-
T ss_pred             CCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEEEeccCcCCCCccceee-
Confidence            7888886655421   2222 2334566889999999887665 4666 99999999998877765 32  32222222 


Q ss_pred             eCCCCCEE-EEEe-CCCcEEEEEccccc
Q 015198          269 LSPNVQWL-AVAS-DKGTVHIFSLRVRV  294 (411)
Q Consensus       269 ~spdg~~l-~s~s-~dg~I~vwd~~~~~  294 (411)
                      ++|++..+ +++. .++.|.++|..+++
T Consensus       396 ~~p~~g~v~~t~~~g~~~Vsvid~~~~~  423 (567)
T 1qks_A          396 VHPTFGPVWATSHMGDDSVALIGTDPEG  423 (567)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             ECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence            57875544 4443 46889999998743

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=8.4e-13  Score=132.92  Aligned_cols=231  Identities=11%  Similarity=-0.006  Sum_probs=148.5

Q ss_pred             cCCCCEEEEEe-CC---cEEEEecC--CCcceEEeec----CCCCEEEEEEeccCCeEEEE-----ecCCCCCCCCCeEE
Q 015198           53 NQDYGCFAAGT-SC---GFRIYNCE--PFKETFRRDL----KSGGFRIVEMLFRCNILALV-----GAGDNSQYPPTKVI  117 (411)
Q Consensus        53 s~~g~~la~g~-dg---~i~iw~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~-----s~~~d~~~~d~~i~  117 (411)
                      +|+|++++... ++   .-.||..+  ..........    ..+...+..+.|+|++..++     +++++     ..|+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~-----~~i~  150 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE-----AVLH  150 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC-----CEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce-----EEEE
Confidence            37899888766 43   35566654  2222111111    13455788899999998887     55555     8999


Q ss_pred             EEECCCCcEE-EEEeecCceeEEEEcCCeEEEE---EcCe-------------EEEEEcCCcee--eEEEeccCCCcceE
Q 015198          118 IWDDHQSRCI-GEFAFRSDVRSVKLSRDRIVVV---LEHK-------------IYVYSFVDLKL--LHQIETLANLRGLC  178 (411)
Q Consensus       118 vwd~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~---~dg~-------------i~iwd~~~~~~--~~~~~~~~~~~~~~  178 (411)
                      +||+.+++.+ ...........++|+||++.++   .+..             |++|++.+++.  ...+..........
T Consensus       151 v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~  230 (695)
T 2bkl_A          151 VIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL  230 (695)
T ss_dssp             EEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred             EEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence            9999999864 2111111226899999998777   3443             99999987763  22333333333556


Q ss_pred             EEccCCCceEEEEecCCC-C--eEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEc---CCCeEEEEEECCCCce-
Q 015198          179 CLSHHSSTSVLACPGLQR-G--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS---TRGTLIRIFNTVDGTR-  251 (411)
Q Consensus       179 ~~~~~~~~~~l~~~g~~d-g--~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s---~dg~~I~vwd~~~~~~-  251 (411)
                      .+.+++++++|+++...+ +  .|++++........+..+...+....+ ++|.+++.+.   .++. |.+||+.+++. 
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~~~~~~  308 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPAKPARA  308 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTTBCSGG
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCCCCCcc
Confidence            777788888887755333 3  455554444456667667666666666 5666444444   2577 99999987753 


Q ss_pred             -EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          252 -LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       252 -~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                       ...+..+.....+..++|+ ++.++++...|+..+||.++
T Consensus       309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence             2344442224568889998 67788889999988888776

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.52  E-value=2e-13  Score=137.54  Aligned_cols=245  Identities=8%  Similarity=-0.084  Sum_probs=156.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe------CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCC----
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ----  110 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~----  110 (411)
                      .+|...+..++|||||++||.+.      +..|++||+++++......+..  .....+.|++++..|+.++.+..    
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCc
Confidence            45666799999999999999544      3579999999865430111211  11146789999877766655411    


Q ss_pred             ----CCCCeEEEEECCCCcE--EEEEe---ecCceeEEEEcCCeEEEE---EcC----eEEEEEcCCceeeEEEeccCCC
Q 015198          111 ----YPPTKVIIWDDHQSRC--IGEFA---FRSDVRSVKLSRDRIVVV---LEH----KIYVYSFVDLKLLHQIETLANL  174 (411)
Q Consensus       111 ----~~d~~i~vwd~~~~~~--~~~~~---~~~~i~~~~~~~~~~~~~---~dg----~i~iwd~~~~~~~~~~~~~~~~  174 (411)
                          .....|++|++.+++.  ...+.   +...+..+.|+|||++++   .++    .|++|+..+++. ..+..+...
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~  273 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGA  273 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSC
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCc
Confidence                0123499999988762  23333   345788999999998877   344    677777655543 344333332


Q ss_pred             cceEEEccCCCceEEEEecC---CCCeEEEEEcCCcc---eEEEecc--ccceeEEEecCCCCEEEEEcCCCeEEEEEEC
Q 015198          175 RGLCCLSHHSSTSVLACPGL---QRGQVRIEHFGLNM---IKLINAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (411)
Q Consensus       175 ~~~~~~~~~~~~~~l~~~g~---~dg~i~i~~~~~~~---~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (411)
                      .....  + +++.+ ++.+.   .++.|.+|+.....   ...+..+  ...+..++|+ ++.++++...|+. .+||.+
T Consensus       274 ~~~~~--~-~~g~l-~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~  347 (695)
T 2bkl_A          274 KYEVH--A-WKDRF-YVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVA  347 (695)
T ss_dssp             CEEEE--E-ETTEE-EEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEE
T ss_pred             eEEEE--e-cCCcE-EEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEE
Confidence            22222  2 23343 33333   25778888775433   2444433  4567888888 7778888888988 777755


Q ss_pred             C-CCceEEEEeCCCCCcceEEEEeCCCCCEEEEEe----CCCcEEEEEcccccc
Q 015198          247 V-DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS----DKGTVHIFSLRVRVV  295 (411)
Q Consensus       247 ~-~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s----~dg~I~vwd~~~~~~  295 (411)
                      . +++.+..+... ..+.+..++++|+++.|+...    ..++|++||+.+++.
T Consensus       348 ~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          348 TLKGKPVRTVQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ETTCCEEEECCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             eCCCCeeEEecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4 46656555532 256788889999998776333    346899999988763

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.47  E-value=2.9e-10  Score=110.74  Aligned_cols=236  Identities=15%  Similarity=0.071  Sum_probs=158.5

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCcEEEEecC--CCcceEEeecCCCCEEEEEEecc----CCeEEEE-ecCCCCCCCCCeE
Q 015198           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCE--PFKETFRRDLKSGGFRIVEMLFR----CNILALV-GAGDNSQYPPTKV  116 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~-s~~~d~~~~d~~i  116 (411)
                      ..+..+.|+|||+++++++ ++.|.+||+.  +.+......  . ......+.++    |++.+++ +...+     +.|
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~--~-G~~P~~ia~s~~~~pDGk~l~v~n~~~-----~~v  268 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK--I-GSEARSIETSKMEGWEDKYAIAGAYWP-----PQY  268 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE--C-CSEEEEEEECCSTTCTTTEEEEEEEET-----TEE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe--c-CCCCceeEEccccCCCCCEEEEEEccC-----CeE
Confidence            3567999999999999989 9999999995  544443332  2 2345677788    5775444 43333     999


Q ss_pred             EEEECCCCcEEEEEeec------------CceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEE
Q 015198          117 IIWDDHQSRCIGEFAFR------------SDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCL  180 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~------------~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  180 (411)
                      .++|..+.+.+..+...            ..+..+..++++..++    .+|.|.++|..+.+.+........ .....+
T Consensus       269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~-~~~~d~  347 (567)
T 1qks_A          269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLHDG  347 (567)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEEEE
T ss_pred             EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc-ccccCc
Confidence            99999999999887621            2567888888755444    579999999877543332222111 133455


Q ss_pred             ccCCCceEEEEecCCCCeEEEEEcCC-cceEEEec-----cccceeEEEecCCCC-EEEEEc-CCCeEEEEEECCC----
Q 015198          181 SHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA-----HDSHIACFTLTLDGL-LLATAS-TRGTLIRIFNTVD----  248 (411)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~-----~~~~i~~l~~sp~g~-~l~s~s-~dg~~I~vwd~~~----  248 (411)
                      .+++++++++++...++.|.+++... +.+..+..     |.+.-..+ ++|++. .++++. .++. |.++|..+    
T Consensus       348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~-Vsvid~~~~~~~  425 (567)
T 1qks_A          348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDS-VALIGTDPEGHP  425 (567)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTTCT
T ss_pred             eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCe-EEEecCCCCCCc
Confidence            66777787776666778899866554 44444443     32212122 578754 444443 4578 99999987    


Q ss_pred             ---CceEEEEeCCCCCcceEEEEeCCCCCEEEEEeC-------CCcEEEEEcccc
Q 015198          249 ---GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD-------KGTVHIFSLRVR  293 (411)
Q Consensus       249 ---~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-------dg~I~vwd~~~~  293 (411)
                         .+.+.++...  ...-..+..+|++++|.+...       .+.|.|+|+.+.
T Consensus       426 ~~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          426 DNAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             TTBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             cccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence               6778888753  222344778999999988763       358999999987

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.45  E-value=1.2e-10  Score=107.86  Aligned_cols=234  Identities=9%  Similarity=-0.033  Sum_probs=151.8

Q ss_pred             EEEEcCCCCEEEEEe-----------CCcEEEEecCCCcceEEeecCCC-----CEEEEEEeccCCeEEEEecCCCCCCC
Q 015198           49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        49 ~l~~s~~g~~la~g~-----------dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      .++++|||++|+++.           ++.|.+||..+.+......+...     ......+.++|++..+..+...   .
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~---~  146 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA---A  146 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC---C
Confidence            899999999999874           46799999987665554443200     1223467889998777665431   1


Q ss_pred             CCeEEEEECCCCcEEEE-EeecCceeEEEEcCCe--EEEE--EcCeEEEEEcCCceeeEEEe-----ccCCCcc-eEEEc
Q 015198          113 PTKVIIWDDHQSRCIGE-FAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVDLKLLHQIE-----TLANLRG-LCCLS  181 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~--~dg~i~iwd~~~~~~~~~~~-----~~~~~~~-~~~~~  181 (411)
                      ++.|.++| .+++.+.. +.....   +.+.+++  .++.  .||.+.++|. +++......     ....++. ...+.
T Consensus       147 ~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~  221 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             CCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence            27899999 99999888 665443   3344443  2233  7899999999 877664332     1111110 01122


Q ss_pred             cCCCceEEEEecCCCCeEEEEEcCCcc---eEEEec----------cccceeEEEecCCCCEEEEEcC----------CC
Q 015198          182 HHSSTSVLACPGLQRGQVRIEHFGLNM---IKLINA----------HDSHIACFTLTLDGLLLATAST----------RG  238 (411)
Q Consensus       182 ~~~~~~~l~~~g~~dg~i~i~~~~~~~---~~~~~~----------~~~~i~~l~~sp~g~~l~s~s~----------dg  238 (411)
                      .... .++ +.. ..+.+.+.+.....   +..+..          .......+.++|+++.|+++..          .+
T Consensus       222 ~~~~-~~~-~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          222 NKSG-RIV-WPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             ecCC-EEE-EEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            2222 223 323 46677775543321   122211          1122344789999988777643          35


Q ss_pred             eEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC-EEEEEe-CCCcEEEEEccccccCC
Q 015198          239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVAS-DKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s-~dg~I~vwd~~~~~~~~  297 (411)
                      . |.++|+.+++.+.++..+   ....+++|+|||+ +|+++. .++.|.|||+.+++...
T Consensus       299 ~-V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          299 E-VTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             e-EEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence            6 999999999999998753   3588999999999 777777 58999999999998764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.44  E-value=6.5e-10  Score=99.15  Aligned_cols=235  Identities=8%  Similarity=-0.047  Sum_probs=157.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      +...+.++++.++|.++++.. ++.|..|+.+.  ......+......+..+.+.+++.++++...+     +.|.+||.
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d~  127 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKG--IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNG-----NRIGRITD  127 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS--CEEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECT
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC--cEEEEeCCCcCCCceeeEECCCCCEEEEecCC-----ceEEEECC
Confidence            456799999999999888777 78899998762  22222222234567778888888777776555     89999997


Q ss_pred             CCCcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          122 HQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       122 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                       +++......  ....+..+++.+++.+.+   .++.|..||. +++... +...........+..++++.+.++ ...+
T Consensus       128 -~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~-~~~~  203 (299)
T 2z2n_A          128 -DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFV-EIIG  203 (299)
T ss_dssp             -TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEE-ETTT
T ss_pred             -CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEE-ccCC
Confidence             665443222  345688999999987776   3578999998 665543 322222224556667777766554 3356


Q ss_pred             CeEEEEEcCCcceEEE--eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC
Q 015198          197 GQVRIEHFGLNMIKLI--NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (411)
Q Consensus       197 g~i~i~~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (411)
                      +.|.+++..+. ...+  ..+...+..++++++|+++++...++. |.+||. +++ +..+....+...+.++++ ++|+
T Consensus       204 ~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~  278 (299)
T 2z2n_A          204 NKIGRITTSGE-ITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGET  278 (299)
T ss_dssp             TEEEEECTTCC-EEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSC
T ss_pred             ceEEEECCCCc-EEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CCc-eEEEeCCCCCCccceEEe-cCCC
Confidence            78888777444 3333  234567889999999997777667788 999998 554 334432224457899999 8888


Q ss_pred             EEEEEeCCCcEEEEEccccc
Q 015198          275 WLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       275 ~l~s~s~dg~I~vwd~~~~~  294 (411)
                      ++++.. .+.|..++.++++
T Consensus       279 l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          279 IWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEEEET-TTEEEEEEEC---
T ss_pred             EEEEec-CCcEEEEEcCccc
Confidence            766655 5668888877653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.42  E-value=7.8e-11  Score=110.56  Aligned_cols=237  Identities=9%  Similarity=-0.009  Sum_probs=153.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      -.....|+|+++++++++.. ++.|++|+.++........  ..... . +.+++++..++.+..+   ....|.+|+..
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~--~~~~~-~-ia~~~~g~~l~~~d~~---~~~~I~~~d~~  202 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP--GFKGG-K-PAVTKDKQRVYSIGWE---GTHTVYVYMKA  202 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE--TCCBC-B-CEECTTSSEEEEEBSS---TTCEEEEEEGG
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec--cCCCC-c-eeEecCCCcEEEEecC---CCceEEEEEcC
Confidence            34678999999999777777 7999999998644322222  22222 2 6677776554444432   00289999977


Q ss_pred             CCcEEEEE----e-ecCceeEEEEcC-CeEEEE--EcCeEEEEEcCCceeeEE----EeccCCCcceE-EEccCCCceEE
Q 015198          123 QSRCIGEF----A-FRSDVRSVKLSR-DRIVVV--LEHKIYVYSFVDLKLLHQ----IETLANLRGLC-CLSHHSSTSVL  189 (411)
Q Consensus       123 ~~~~~~~~----~-~~~~i~~~~~~~-~~~~~~--~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~l  189 (411)
                      .+.....+    . ....+.+++++| ++.+++  .++.|+.||..++.....    ...... .... .+.+++++..|
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~-~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG-TNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC-CSSCCEEEEETTTTEE
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC-CCccccEEEeCCCCEE
Confidence            66654444    2 345678899999 676666  567899999987653222    111111 1101 44455532334


Q ss_pred             EEecCCCCeEEEEEcCCcceEEEeccc---------------cceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEE
Q 015198          190 ACPGLQRGQVRIEHFGLNMIKLINAHD---------------SHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQ  253 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~~~~~~~~~~~---------------~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~  253 (411)
                      .++...++.|+.++.++. +..+.++.               .....++++++|+++++-. .++. |+.||+.+++.. 
T Consensus       282 yv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G~v~-  358 (409)
T 3hrp_A          282 YMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDGYVS-  358 (409)
T ss_dssp             EEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTTEEE-
T ss_pred             EEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCCEEE-
Confidence            444556788888887765 33343332               3467899999999777777 7788 999998777653 


Q ss_pred             EEeCC-C------------CCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          254 EVRRG-V------------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       254 ~~~~~-~------------~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      ++.+. .            .-.....++++++|.++++-..++.|+.++++
T Consensus       359 ~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          359 TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            44331 0            02358899999998888888888889888763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.42  E-value=1.1e-10  Score=105.23  Aligned_cols=195  Identities=7%  Similarity=-0.014  Sum_probs=126.6

Q ss_pred             EEEEeccCCeEEEEe-------cCCCCCCCCCeEEEEECCCCcEEEEEe-----ecCceeEEEEcCC-eEEEE--EcCeE
Q 015198           90 IVEMLFRCNILALVG-------AGDNSQYPPTKVIIWDDHQSRCIGEFA-----FRSDVRSVKLSRD-RIVVV--LEHKI  154 (411)
Q Consensus        90 ~~~~~~~~~~~~l~s-------~~~d~~~~d~~i~vwd~~~~~~~~~~~-----~~~~i~~~~~~~~-~~~~~--~dg~i  154 (411)
                      ...+.|++++.++++       +..+     +.|.+||..+++......     +...+.++.++++ +.+++  .++.|
T Consensus        20 ~~~~~~~~~g~l~~~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l   94 (314)
T 1pjx_A           20 AEGPVFDKNGDFYIVAPEVEVNGKPA-----GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEEC-----CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             ccCceECCCCCEEEEEeccccCCCCC-----CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCE
Confidence            345667777776666       4444     899999988887654332     3467899999999 87555  34589


Q ss_pred             EEEEcCCceeeEE-EeccC--CCcceEEEccCCCceEEEEecCCC---------------CeEEEEEcCCcceEEEeccc
Q 015198          155 YVYSFVDLKLLHQ-IETLA--NLRGLCCLSHHSSTSVLACPGLQR---------------GQVRIEHFGLNMIKLINAHD  216 (411)
Q Consensus       155 ~iwd~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~g~~d---------------g~i~i~~~~~~~~~~~~~~~  216 (411)
                      .+||.. ++.... .....  .......+..++++.++++.. .+               +.|..++..++ ...+..+.
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~~  171 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP-AGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDTAF  171 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC-BCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEEEE
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEec-CcccccccccccccCCCCeEEEECCCCC-EEEeccCC
Confidence            999987 665432 21111  111244566666776665533 33               45555655533 33333344


Q ss_pred             cceeEEEec----CCCCEEEEE-cCCCeEEEEEECC-CCce-----EEEEeCCCCC-cceEEEEeCCCCCEEEEEeCCCc
Q 015198          217 SHIACFTLT----LDGLLLATA-STRGTLIRIFNTV-DGTR-----LQEVRRGVDR-AEIYSIALSPNVQWLAVASDKGT  284 (411)
Q Consensus       217 ~~i~~l~~s----p~g~~l~s~-s~dg~~I~vwd~~-~~~~-----~~~~~~~~~~-~~v~~l~~spdg~~l~s~s~dg~  284 (411)
                      .....++++    |+|+.|+.+ ..++. |.+||+. +++.     ...+..  +. ..+..++++++|+++++...++.
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~--~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPG--THEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCC--CSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCC--CCCCCCCceEECCCCCEEEEEcCCCE
Confidence            556789999    999765544 56788 9999986 4442     122222  22 56789999999998888778889


Q ss_pred             EEEEEcccccc
Q 015198          285 VHIFSLRVRVV  295 (411)
Q Consensus       285 I~vwd~~~~~~  295 (411)
                      |.+||.++++.
T Consensus       249 i~~~d~~~g~~  259 (314)
T 1pjx_A          249 IEVFGPDGGQP  259 (314)
T ss_dssp             EEEECTTCBSC
T ss_pred             EEEEcCCCCcE
Confidence            99999876653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.42  E-value=2.8e-10  Score=102.04  Aligned_cols=223  Identities=11%  Similarity=0.041  Sum_probs=147.4

Q ss_pred             CCCCCeEEEEEcCCCCEEE-EEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           42 VDEIELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la-~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      .+..-..+..|++++..|+ +.. ++.|..|+.++... ....   ....+..+.+++++.++++.  +     ..|.+|
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~---~~~~~~~i~~~~dG~l~v~~--~-----~~l~~~   78 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT---MDAPVSSVALRQSGGYVATI--G-----TKFCAL   78 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE---CSSCEEEEEEBTTSSEEEEE--T-----TEEEEE
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe---CCCceEEEEECCCCCEEEEE--C-----CeEEEE
Confidence            3444567899999765554 544 89999999886443 2222   23356677888888766664  2     789999


Q ss_pred             ECCCCcEEEEEee-----cCceeEEEEcCCeEEEEEc------------CeEEEEEcC-CceeeEEEeccCCCcceEEEc
Q 015198          120 DDHQSRCIGEFAF-----RSDVRSVKLSRDRIVVVLE------------HKIYVYSFV-DLKLLHQIETLANLRGLCCLS  181 (411)
Q Consensus       120 d~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~d------------g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~  181 (411)
                      |..+++.......     ...+..++++|+|.+.+.+            ....+|.+. .++...... ...  ....+.
T Consensus        79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-~~~--~pngi~  155 (297)
T 3g4e_A           79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-QVD--ISNGLD  155 (297)
T ss_dssp             ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-EES--BEEEEE
T ss_pred             ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-ccc--cccceE
Confidence            9888765443332     2357889999999877721            223444443 233333222 212  234556


Q ss_pred             cCCCceEEEEecCCCCeEEEEEcC---Ccc-----eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEE
Q 015198          182 HHSSTSVLACPGLQRGQVRIEHFG---LNM-----IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (411)
Q Consensus       182 ~~~~~~~l~~~g~~dg~i~i~~~~---~~~-----~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (411)
                      +++++..|+++.+.++.|.+++.+   +..     ...+..+......++++++|++.++....+. |.+||..+++.+.
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~  234 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQ  234 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEE
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEE
Confidence            666776666666667888887653   221     1122233456789999999998887777888 9999998899998


Q ss_pred             EEeCCCCCcceEEEEeC-CCCCEEEEEeC
Q 015198          254 EVRRGVDRAEIYSIALS-PNVQWLAVASD  281 (411)
Q Consensus       254 ~~~~~~~~~~v~~l~~s-pdg~~l~s~s~  281 (411)
                      .+..  ....+++++|. ||++.|++++.
T Consensus       235 ~i~~--p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          235 TVKL--PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence            8886  44579999998 88887766554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.42  E-value=4.2e-10  Score=100.86  Aligned_cols=198  Identities=11%  Similarity=0.035  Sum_probs=131.0

Q ss_pred             EEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEE
Q 015198           90 IVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQ  167 (411)
Q Consensus        90 ~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~  167 (411)
                      .-...|++ ++.++++....     +.|..||..+++. ..+.....+.++++++++.+++ .++.|.+||..+++....
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPA-----KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTT-----TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEEE
T ss_pred             ccCCeEECCCCEEEEEECCC-----CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEEE
Confidence            34566776 45555555554     8999999887765 4566778899999999998777 788999999988765443


Q ss_pred             EeccC--CCcceEEEccCCCceEEEEecC----------CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEE-EE
Q 015198          168 IETLA--NLRGLCCLSHHSSTSVLACPGL----------QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLA-TA  234 (411)
Q Consensus       168 ~~~~~--~~~~~~~~~~~~~~~~l~~~g~----------~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~-s~  234 (411)
                      .....  .......+..++++.+++.+..          ..+.|+..+..++ ...+..+....+.++|+|+++.|+ +.
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv~~  167 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYYID  167 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEEEE
T ss_pred             EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEEec
Confidence            33221  1123456667777776654321          1123333433333 333333445567899999998664 55


Q ss_pred             cCCCeEEEEEEC--CCCceE--EEEeC-CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          235 STRGTLIRIFNT--VDGTRL--QEVRR-GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       235 s~dg~~I~vwd~--~~~~~~--~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      +.++. |.+||+  .++...  ..+.. ......+..++++++|++.++....+.|.+||.++++.
T Consensus       168 ~~~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~  232 (297)
T 3g4e_A          168 SLSYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR  232 (297)
T ss_dssp             GGGTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE
T ss_pred             CCCCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE
Confidence            56778 999987  456532  12221 11234678999999999888877788899999987764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.40  E-value=1.8e-11  Score=124.18  Aligned_cols=243  Identities=11%  Similarity=-0.011  Sum_probs=151.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe--CC----cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC----
Q 015198           42 VDEIELISVSWNQDYGCFAAGT--SC----GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY----  111 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~--dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~----  111 (411)
                      +|...+..++|||||++||.+.  +|    .|++||+++++.. ...+  ....+..+.|+++ ..++.+..+...    
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~-~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL-ADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-EEEE--EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-CccC--CCceeccEEEECC-CEEEEEEecCcccccc
Confidence            3445788999999999999876  33    5999999986542 2221  1222245778888 555444333110    


Q ss_pred             -----CCCeEEEEECCCCcE--EEEEee---cCceeEEEEcCCeEEEE---Ec-----CeEEEEEcCCc--eeeEEEecc
Q 015198          112 -----PPTKVIIWDDHQSRC--IGEFAF---RSDVRSVKLSRDRIVVV---LE-----HKIYVYSFVDL--KLLHQIETL  171 (411)
Q Consensus       112 -----~d~~i~vwd~~~~~~--~~~~~~---~~~i~~~~~~~~~~~~~---~d-----g~i~iwd~~~~--~~~~~~~~~  171 (411)
                           ....|++|++.+++.  ...+..   ...+..+.|+|||++++   .+     ..|++||+.++  +....+..+
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~  315 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD  315 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence                 024699999887752  233332   23588999999998776   33     38999999876  314455444


Q ss_pred             CCCcceEEEccCCCceEEEEecCC---CCeEEEEEcCC--cceEE-EeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          172 ANLRGLCCLSHHSSTSVLACPGLQ---RGQVRIEHFGL--NMIKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       172 ~~~~~~~~~~~~~~~~~l~~~g~~---dg~i~i~~~~~--~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                      ..... ..+.  +++..|++....   ++.|.+++...  ..... +..+...+..++++ ++.++++...++. .+||.
T Consensus       316 ~~~~~-~~~~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~  390 (741)
T 1yr2_A          316 LKAQW-DFVD--GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLA  390 (741)
T ss_dssp             SSSCE-EEEE--EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEE
T ss_pred             CCceE-EEEe--ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEE
Confidence            43222 2233  344555554432   44577777665  23333 34445566677887 6667888888887 77765


Q ss_pred             CC-CCceEEEEeCCCCCcceEEEEeCCCCCEEEEEe----CCCcEEEEEccccc
Q 015198          246 TV-DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS----DKGTVHIFSLRVRV  294 (411)
Q Consensus       246 ~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s----~dg~I~vwd~~~~~  294 (411)
                      +. +++....+... +...+..+.++|+++.|+...    ..++|++||+.+++
T Consensus       391 ~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          391 FDLDGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EETTSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EeCCCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            43 46666665532 356789999999988665332    34689999998876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=7.7e-11  Score=119.47  Aligned_cols=234  Identities=9%  Similarity=-0.044  Sum_probs=145.9

Q ss_pred             cCCCCEEEEEe-CC---cEEEEecCCC-----cceEEee---c-CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           53 NQDYGCFAAGT-SC---GFRIYNCEPF-----KETFRRD---L-KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        53 s~~g~~la~g~-dg---~i~iw~~~~~-----~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      .|+|++++... ++   .-.||..+..     .......   + ..+...+..+.|+||+..++.+..+.......|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            48999988766 33   3567765432     2111111   1 123346778899999877665433200011479999


Q ss_pred             ECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcC--------------eEEEEEcCCcee--eEEEeccCCCcceEEE
Q 015198          120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEH--------------KIYVYSFVDLKL--LHQIETLANLRGLCCL  180 (411)
Q Consensus       120 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg--------------~i~iwd~~~~~~--~~~~~~~~~~~~~~~~  180 (411)
                      |+.+++.+........+..++|+|| +.++   .++              .|++|++.+++.  ...+.....+.....+
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            9999988665333333467899999 6665   222              499999977653  2233333333345677


Q ss_pred             ccCCCceEEEEecCC----CCeEEEEEcCCc--c-eEEEeccccceeEEEecCCCCEEEEEcC----CCeEEEEEECCCC
Q 015198          181 SHHSSTSVLACPGLQ----RGQVRIEHFGLN--M-IKLINAHDSHIACFTLTLDGLLLATAST----RGTLIRIFNTVDG  249 (411)
Q Consensus       181 ~~~~~~~~l~~~g~~----dg~i~i~~~~~~--~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~----dg~~I~vwd~~~~  249 (411)
                      .+++++++|++....    ...|++++....  . ...+..+...+.... +|+|+.|+..+.    ++. |.+||+.++
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~-l~~~d~~~~  351 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK-IVRVDLSGS  351 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE-EEEEECSSS
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE-EEEEeCCCC
Confidence            778888887765532    347888776554  4 566666665555553 488988877664    456 999999875


Q ss_pred             -ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          250 -TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       250 -~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                       .....+..+ +...+..+.|+ ++.++++...|+..+||.++
T Consensus       352 ~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          352 TPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             ccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence             233444432 44567788887 66778888889988887765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.37  E-value=9.7e-11  Score=107.44  Aligned_cols=234  Identities=10%  Similarity=-0.026  Sum_probs=151.3

Q ss_pred             EEEEcCCCCEEEEEe-----------CCcEEEEecCCCcceEEeecCCC-----CEEEEEEeccCCeEEEEecC--CCCC
Q 015198           49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAG--DNSQ  110 (411)
Q Consensus        49 ~l~~s~~g~~la~g~-----------dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~--~d~~  110 (411)
                      .++++|||++|+++.           ++.|.+||..+.+......+..+     ......+.+++++..+..+.  .+  
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~--  159 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA--  159 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS--
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC--
Confidence            499999999887764           56799999998776555544221     11334567888876554433  24  


Q ss_pred             CCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe--EEEE--EcCeEEEEEcCC-ceeeEEEeccCC----Ccce-EEE
Q 015198          111 YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVD-LKLLHQIETLAN----LRGL-CCL  180 (411)
Q Consensus       111 ~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~--~dg~i~iwd~~~-~~~~~~~~~~~~----~~~~-~~~  180 (411)
                         +.|.++|+.+++.+.++...+.   ..+.|.+  .++.  .||.+.+.++.+ ++..........    ++.. ..+
T Consensus       160 ---~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~  233 (386)
T 3sjl_D          160 ---PAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY  233 (386)
T ss_dssp             ---CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE
T ss_pred             ---CeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccccee
Confidence               8999999999999999875442   1122332  2222  688888888865 554322211111    1100 122


Q ss_pred             ccCCCceEEEEecCCCCeEEEEEcCCcceE---EEe----------ccccceeEEEecCCCCEEEEEcC----------C
Q 015198          181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIK---LIN----------AHDSHIACFTLTLDGLLLATAST----------R  237 (411)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~---~~~----------~~~~~i~~l~~sp~g~~l~s~s~----------d  237 (411)
                      . .+++.+++.+  .+|.|++.+..+....   .+.          ........++++++++.|+....          .
T Consensus       234 ~-~~dG~~~~vs--~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~  310 (386)
T 3sjl_D          234 S-QKAGRLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  310 (386)
T ss_dssp             E-TTTTEEEEEB--TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             E-cCCCcEEEEe--CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence            2 2455555443  4789998766544322   221          01223445788999998877643          1


Q ss_pred             CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC-EEEEE-eCCCcEEEEEccccccCC
Q 015198          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVA-SDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~-s~dg~I~vwd~~~~~~~~  297 (411)
                      +. |.++|+.+++.+..+..+   ..+++|++++|++ +|+++ ..++.|.|+|..+++...
T Consensus       311 ~~-V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~  368 (386)
T 3sjl_D          311 RF-VVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR  368 (386)
T ss_dssp             EE-EEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CE-EEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence            45 999999999999998853   3788999999997 66665 458999999999998654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.37  E-value=8.7e-11  Score=103.47  Aligned_cols=193  Identities=8%  Similarity=-0.010  Sum_probs=125.9

Q ss_pred             EEEEEeccCCeEEEE-ecCCCCCCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCce
Q 015198           89 RIVEMLFRCNILALV-GAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLK  163 (411)
Q Consensus        89 ~~~~~~~~~~~~~l~-s~~~d~~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~  163 (411)
                      ....+.+++++.+++ +...+     +.|.+||..++... .+.  ....+.++++++++.+++  .++.|++||.....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~-----~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMY-----GRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSS-----CEEEEECC-----E-ECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             CccceEECCCCCEEEEccCCC-----CcEEEecCCCcccc-eEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCce
Confidence            456677888877777 54555     89999996554432 222  335678899999987666  36899999986543


Q ss_pred             eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEE-eccccceeEEEecCCCCEEEEEcCCCeEEE
Q 015198          164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIR  242 (411)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~  242 (411)
                      . ..+.... ......+..++++.++++ ...++.|.+++......... ......+..++++++|+++++...++. |.
T Consensus        99 ~-~~~~~~~-~~~p~~i~~~~~g~l~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~  174 (270)
T 1rwi_B           99 Q-TVLPFDG-LNYPEGLAVDTQGAVYVA-DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VV  174 (270)
T ss_dssp             C-EECCCCS-CSSEEEEEECTTCCEEEE-EGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EE
T ss_pred             E-eeeecCC-cCCCcceEECCCCCEEEE-ECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EE
Confidence            3 2232111 123456666667665554 34577888875443322221 223346788999999998777777788 99


Q ss_pred             EEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      +||............  ....+..++++++|.++++...++.|.+|+....
T Consensus       175 ~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          175 KLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             EECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             EEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            999876654432222  2256899999999987777777889999998654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.33  E-value=3.5e-09  Score=96.24  Aligned_cols=218  Identities=8%  Similarity=0.033  Sum_probs=144.2

Q ss_pred             CCeEEEEEcCCCCEE-EEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           45 IELISVSWNQDYGCF-AAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        45 ~~V~~l~~s~~g~~l-a~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      .......|+|++..+ +++. ++.|..|+.++... ....+   ...+..+.+.+++.++++..       ..|.+||..
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~---~~~v~~i~~~~dg~l~v~~~-------~gl~~~d~~  117 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHAL---PFMGSALAKISDSKQLIASD-------DGLFLRDTA  117 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEEC---SSCEEEEEEEETTEEEEEET-------TEEEEEETT
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEEC---CCcceEEEEeCCCeEEEEEC-------CCEEEEECC
Confidence            345788999985554 4555 88999999876432 22222   23567777888888777652       459999988


Q ss_pred             CCcEEEEEee-----cCceeEEEEcCCeEEEE-E-c-------CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceE
Q 015198          123 QSRCIGEFAF-----RSDVRSVKLSRDRIVVV-L-E-------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (411)
Q Consensus       123 ~~~~~~~~~~-----~~~i~~~~~~~~~~~~~-~-d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (411)
                      +++.......     ...+.++.++++|.+.+ . +       +.|+.++  +++...... ...  ....+.+++++..
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~--~~~~i~~s~dg~~  192 (326)
T 2ghs_A          118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DIS--IPNSICFSPDGTT  192 (326)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EES--SEEEEEECTTSCE
T ss_pred             CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-CCc--ccCCeEEcCCCCE
Confidence            8876443332     13588999999998777 2 1       4566666  455433222 211  2335566667766


Q ss_pred             EEEecCCCCeEEEEEcC---C-cc--eEEE---eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC
Q 015198          189 LACPGLQRGQVRIEHFG---L-NM--IKLI---NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV  259 (411)
Q Consensus       189 l~~~g~~dg~i~i~~~~---~-~~--~~~~---~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~  259 (411)
                      ++++...++.|.+++..   + ..  ...+   .........++++++|.+.++...++. |.+||. +++.+..+..  
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~--  268 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEV--  268 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEEC--
T ss_pred             EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEEC--
Confidence            66655567889887754   3 21  1122   223455678999999998777766788 999997 6787777775  


Q ss_pred             CCcceEEEEeC-CCCCEEEEEeCC
Q 015198          260 DRAEIYSIALS-PNVQWLAVASDK  282 (411)
Q Consensus       260 ~~~~v~~l~~s-pdg~~l~s~s~d  282 (411)
                      ....+.+++|+ ++++.|++++..
T Consensus       269 ~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          269 PGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCCcEEEEEecCCCCEEEEEecC
Confidence            44579999998 888877655543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.32  E-value=3.6e-09  Score=94.34  Aligned_cols=233  Identities=9%  Similarity=-0.061  Sum_probs=154.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      +...+.++++.++|.++++.. ++.|..|+.+ .+. ....+......+..+.+.+++.++++...+     +.|..+|.
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~  132 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNG-----DRIGKLTA  132 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTT-----TEEEEECT
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCC-----CeEEEECC
Confidence            346789999999998877766 7889999877 332 333332234556778888887777776544     89999997


Q ss_pred             CCCcEEEE-Ee-ecCceeEEEEcCCeEEEE-E--cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          122 HQSRCIGE-FA-FRSDVRSVKLSRDRIVVV-L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       122 ~~~~~~~~-~~-~~~~i~~~~~~~~~~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      . ++.... +. ....+..+++.+++.+.+ .  ++.|..+|. +++... +...........+..++++.+.++ ....
T Consensus       133 ~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~-~~~~  208 (300)
T 2qc5_A          133 D-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFV-EIMG  208 (300)
T ss_dssp             T-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEE-ETTT
T ss_pred             C-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEE-ccCC
Confidence            6 655422 12 345788999999887666 2  678999998 555443 332222224556666767766554 3346


Q ss_pred             CeEEEEEcCCcceEE-EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCE
Q 015198          197 GQVRIEHFGLNMIKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW  275 (411)
Q Consensus       197 g~i~i~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~  275 (411)
                      +.|.+++..+..... +..+...+.+++++++|+++++...++. |..||. +++.. .+........+.+++++++|++
T Consensus       209 ~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l  285 (300)
T 2qc5_A          209 NKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSV  285 (300)
T ss_dssp             TEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCE
T ss_pred             CEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CCcEE-EEECCccCCccceeEeCCCCCE
Confidence            678887765443332 2234566889999999997777766788 999997 55543 3432213456889999999986


Q ss_pred             EEEEeCCCcEEEEEcc
Q 015198          276 LAVASDKGTVHIFSLR  291 (411)
Q Consensus       276 l~s~s~dg~I~vwd~~  291 (411)
                      +++.. . .|..+|.+
T Consensus       286 ~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          286 WFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEECS-S-EEEEEEEC
T ss_pred             EEEcc-C-ceEEeCCC
Confidence            65544 4 67776653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.32  E-value=3.9e-09  Score=95.87  Aligned_cols=190  Identities=9%  Similarity=-0.103  Sum_probs=122.1

Q ss_pred             EEeccCC-eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEe
Q 015198           92 EMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIE  169 (411)
Q Consensus        92 ~~~~~~~-~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~  169 (411)
                      ...|+++ +.++++...+     +.|..||..+++. ..+.....+.++.+++++.+++ .+..|++||..+++......
T Consensus        53 gp~~~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILE-----RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEETTTTEEEEEEGGG-----TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred             CCeEeCCCCEEEEEECCC-----CEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEee
Confidence            3456664 4455554444     8999999877654 3455667899999999998777 66679999998877543322


Q ss_pred             ccC--CCcceEEEccCCCceEEEEecC-----CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEE-cCCCeEE
Q 015198          170 TLA--NLRGLCCLSHHSSTSVLACPGL-----QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA-STRGTLI  241 (411)
Q Consensus       170 ~~~--~~~~~~~~~~~~~~~~l~~~g~-----~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I  241 (411)
                      ...  .......+..++++.+++.+..     ..+.|..++ .+ .+..+..+......++|+|+|+.|+.+ +.++. |
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~-I  203 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNR-L  203 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCE-E
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE-E
Confidence            111  1123556677777776654321     123455544 43 333333344456789999999876554 45677 9


Q ss_pred             EEEECC--CC-ce--EEEEe-CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198          242 RIFNTV--DG-TR--LQEVR-RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       242 ~vwd~~--~~-~~--~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                      .+||+.  ++ +.  ...+. .......+..++++++|.++++...++.|.+|+.
T Consensus       204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            999986  55 32  11221 1113346788999999998777767788999987

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.31  E-value=7e-11  Score=118.77  Aligned_cols=242  Identities=10%  Similarity=0.040  Sum_probs=150.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe--C----CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCC----
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT--S----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ----  110 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~--d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~----  110 (411)
                      .+|...+..++|||||++||.+.  .    ..|++||+++++.. ...+  .......+.|+ |+..|+.+..+..    
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~-~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL-ETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE-EEEE--EEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC-cccc--CCceeccEEEe-CCCEEEEEEecCccccc
Confidence            45667899999999999999654  2    46899999986532 2222  11112344566 5443333322210    


Q ss_pred             ----CCCCeEEEEECCCCcE--EEEEee----cCceeEEEEcCCeEEEE---E----cCeEEEEEcCCce-eeEEEeccC
Q 015198          111 ----YPPTKVIIWDDHQSRC--IGEFAF----RSDVRSVKLSRDRIVVV---L----EHKIYVYSFVDLK-LLHQIETLA  172 (411)
Q Consensus       111 ----~~d~~i~vwd~~~~~~--~~~~~~----~~~i~~~~~~~~~~~~~---~----dg~i~iwd~~~~~-~~~~~~~~~  172 (411)
                          .....|++|++.++..  ...+..    ...+..+.++||+++++   .    .+.|+++|+.+++ ....+..+.
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~  280 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL  280 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence                1235699999887653  333332    23467899999999886   1    2589999997763 344554444


Q ss_pred             CCcceEEEccCCCceEEEEecCCC---CeEEEEEcCCcc---eEEEeccccceeEEEecCCCCEEEEEcCCC---eEEEE
Q 015198          173 NLRGLCCLSHHSSTSVLACPGLQR---GQVRIEHFGLNM---IKLINAHDSHIACFTLTLDGLLLATASTRG---TLIRI  243 (411)
Q Consensus       173 ~~~~~~~~~~~~~~~~l~~~g~~d---g~i~i~~~~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~~I~v  243 (411)
                      ..... .+.+++  ..|++....+   +.|..++.....   ...+..|...+.  .|+++++.|+....++   . |++
T Consensus       281 ~~~~~-~~~~~g--~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~-l~~  354 (693)
T 3iuj_A          281 DADVS-LVDNKG--STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR-VEQ  354 (693)
T ss_dssp             SSCEE-EEEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE-EEE
T ss_pred             CceEE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE-EEE
Confidence            32222 244433  3333333333   567777765533   356666766654  8899999887665544   5 899


Q ss_pred             EECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC----CcEEEEEccccc
Q 015198          244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK----GTVHIFSLRVRV  294 (411)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d----g~I~vwd~~~~~  294 (411)
                      ||+. +.....+... ..+.+..+.+++++..|+....+    ++|+.||+.+++
T Consensus       355 ~d~~-g~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          355 FDYE-GKRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             ECTT-SCEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EECC-CCeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            9986 4444555432 34567788888888877655544    789999998775

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.31  E-value=2.6e-09  Score=98.71  Aligned_cols=226  Identities=13%  Similarity=0.080  Sum_probs=146.5

Q ss_pred             CCCCEEEEEe--CCcEEEEecCCC--cceEEeecC-------CCCEEEEEEeccCCeEEEEecCCC-CCCCCCeEEEEEC
Q 015198           54 QDYGCFAAGT--SCGFRIYNCEPF--KETFRRDLK-------SGGFRIVEMLFRCNILALVGAGDN-SQYPPTKVIIWDD  121 (411)
Q Consensus        54 ~~g~~la~g~--dg~i~iw~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~s~~~d-~~~~d~~i~vwd~  121 (411)
                      +++++|++.+  ++.|.|+|+.+.  +..+...+.       .+......+...|++ +++++..+ .....+.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            8899998877  899999998743  222322221       122344556667888 44433221 1112378999999


Q ss_pred             CCCcEEEEEeec----CceeEEEEcCCeEEEE-E---------------------cCeEEEEEcCCceeeEEEeccCCCc
Q 015198          122 HQSRCIGEFAFR----SDVRSVKLSRDRIVVV-L---------------------EHKIYVYSFVDLKLLHQIETLANLR  175 (411)
Q Consensus       122 ~~~~~~~~~~~~----~~i~~~~~~~~~~~~~-~---------------------dg~i~iwd~~~~~~~~~~~~~~~~~  175 (411)
                      ++++.+..+...    .--..+.|+|+++.++ .                     +.+|.+||+.+++.+.++.......
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            999999988722    2234578899988776 3                     5899999999998888887642211


Q ss_pred             c--eEEEccCCCceEEEEecC-----CCCeEEEEEcCCcc---eEEE--ecc----------------ccceeEEEecCC
Q 015198          176 G--LCCLSHHSSTSVLACPGL-----QRGQVRIEHFGLNM---IKLI--NAH----------------DSHIACFTLTLD  227 (411)
Q Consensus       176 ~--~~~~~~~~~~~~l~~~g~-----~dg~i~i~~~~~~~---~~~~--~~~----------------~~~i~~l~~sp~  227 (411)
                      .  -+.+.+++++.++.+++.     .+++|.+|..+...   .+.+  ...                ......|.+++|
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            2  234566888887766554     56678764433221   1111  110                134678999999


Q ss_pred             CCEEEEEcCCCeEEEEEECCC---CceEEEEeCCCC------------CcceEEEEeCCCCCEEEEEe
Q 015198          228 GLLLATASTRGTLIRIFNTVD---GTRLQEVRRGVD------------RAEIYSIALSPNVQWLAVAS  280 (411)
Q Consensus       228 g~~l~s~s~dg~~I~vwd~~~---~~~~~~~~~~~~------------~~~v~~l~~spdg~~l~s~s  280 (411)
                      |++|.++......|.+||+..   .+.+..+..+..            .+....++++|||++|+++.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999888776433399999853   355555554211            01357899999999999988

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.30  E-value=1e-08  Score=94.77  Aligned_cols=233  Identities=6%  Similarity=-0.115  Sum_probs=141.1

Q ss_pred             EcCCCCEEEEEe---CC---cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCC-C----CCCCCeEEEEE
Q 015198           52 WNQDYGCFAAGT---SC---GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-S----QYPPTKVIIWD  120 (411)
Q Consensus        52 ~s~~g~~la~g~---dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~----~~~d~~i~vwd  120 (411)
                      ..|+++++.+..   .+   .|.+||..+.+.+..  +..+.. . .+.++|++..+..+... .    ...++.|.+||
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~--i~~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD  103 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH--VNGGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE--ecCCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence            346777666544   11   789999988665433  323333 2 78889988665554310 0    00127899999


Q ss_pred             CCCCcEEEEEeec--------CceeEEEEcCCeEEEE----E-cCeEEEEEcCCceeeEE-EeccCCCcceEEEccCCCc
Q 015198          121 DHQSRCIGEFAFR--------SDVRSVKLSRDRIVVV----L-EHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHHSST  186 (411)
Q Consensus       121 ~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~----~-dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  186 (411)
                      ..+.+.+..+...        .....+.++||++++.    . ++.|.++| .+++.+.. +....    +..+.+.+..
T Consensus       104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~  178 (373)
T 2mad_H          104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPS  178 (373)
T ss_pred             CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCc
Confidence            9999888877632        2355899999998877    2 47899999 99988877 64332    2334444444


Q ss_pred             eEEEEecCCCCeEEEEEcCCcceEEEe-----ccccce-eEEEecCCCCEEEEEcCCCeEEEEEECCCCc--eEEEEeCC
Q 015198          187 SVLACPGLQRGQVRIEHFGLNMIKLIN-----AHDSHI-ACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRG  258 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~~~~~~~~-----~~~~~i-~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~  258 (411)
                      .+++  .+.||.+.+++..++......     ....++ ....+.+++..++..+..+. +.+.|+..+.  .+..+...
T Consensus       179 ~~~~--~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-v~vid~~~~~~~v~~~~~~~  255 (373)
T 2mad_H          179 TFYL--LCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK-ILQADISAAGATNKAPIDAL  255 (373)
T ss_pred             eEEE--EcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce-EEEEeccCCcceEeeeeeec
Confidence            4443  335777777555444432221     111221 23456666655554456778 9999987653  22222210


Q ss_pred             --------CCCcceEEEEeCCCCCEEEEEeC----------CCcEEEEEccccccC
Q 015198          259 --------VDRAEIYSIALSPNVQWLAVASD----------KGTVHIFSLRVRVVG  296 (411)
Q Consensus       259 --------~~~~~v~~l~~spdg~~l~s~s~----------dg~I~vwd~~~~~~~  296 (411)
                              ........+.++||++.|+++..          .+.|.++|+.+++..
T Consensus       256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv  311 (373)
T 2mad_H          256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS  311 (373)
T ss_pred             CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence                    01123445789999998877653          357999999887753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.30  E-value=2.8e-10  Score=106.22  Aligned_cols=229  Identities=12%  Similarity=0.015  Sum_probs=150.3

Q ss_pred             CCCCEEEEEe--C----CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecC----------CCCCCCCCeEE
Q 015198           54 QDYGCFAAGT--S----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG----------DNSQYPPTKVI  117 (411)
Q Consensus        54 ~~g~~la~g~--d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~d~~~~d~~i~  117 (411)
                      ++++.+++..  +    +.|.++|..+.+.+.....  +...  .+.+++++..+..+.          .+     +.|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v--G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~-----~~Vs  152 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG--GFLP--HPVAAEDGSFFAQASTVFERIARGKRT-----DYVE  152 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEE-----EEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC--CCCC--ceEECCCCCEEEEEeccccccccCCCC-----CEEE
Confidence            5777777766  3    6999999998776666554  2222  677888875444332          23     7899


Q ss_pred             EEECCCCcEEEEEeec--------CceeEEEEcCCeEEEE--E---cCeEEEEEcCCceeeEEEeccCC-------Ccce
Q 015198          118 IWDDHQSRCIGEFAFR--------SDVRSVKLSRDRIVVV--L---EHKIYVYSFVDLKLLHQIETLAN-------LRGL  177 (411)
Q Consensus       118 vwd~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~--~---dg~i~iwd~~~~~~~~~~~~~~~-------~~~~  177 (411)
                      ++|..+++.+..+...        .....+.++||++++.  .   ++.|.+.|+.+++.+..+.....       ....
T Consensus       153 viD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~  232 (426)
T 3c75_H          153 VFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVF  232 (426)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEE
Confidence            9999999999988743        3456789999998776  2   57899999999998888764221       0001


Q ss_pred             EEEccCCCceEEEEec------------------------------------CCCCeEEEEEcCCcceEEE---ec----
Q 015198          178 CCLSHHSSTSVLACPG------------------------------------LQRGQVRIEHFGLNMIKLI---NA----  214 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g------------------------------------~~dg~i~i~~~~~~~~~~~---~~----  214 (411)
                      +.  .++++.++++..                                    ...+.|.+.+.....+..+   ..    
T Consensus       233 v~--~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~  310 (426)
T 3c75_H          233 YM--NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA  310 (426)
T ss_dssp             EE--EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred             EE--EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence            11  112222222111                                    1233444433322111111   00    


Q ss_pred             ------cccceeEEEecCCCCEEEEEcC----------CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC-EEE
Q 015198          215 ------HDSHIACFTLTLDGLLLATAST----------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLA  277 (411)
Q Consensus       215 ------~~~~i~~l~~sp~g~~l~s~s~----------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~  277 (411)
                            .......++++|+++.+++...          .+. |.++|+.+.+.+.++..+   .....+.|+|||+ +|+
T Consensus       311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~-VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~ly  386 (426)
T 3c75_H          311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF-VVVLNAETGERINKIELG---HEIDSINVSQDAEPLLY  386 (426)
T ss_dssp             TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE-EEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEE
T ss_pred             ccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE-EEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEE
Confidence                  0111223789999887776542          346 999999999999998752   3588999999999 888


Q ss_pred             EEe-CCCcEEEEEccccccCC
Q 015198          278 VAS-DKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       278 s~s-~dg~I~vwd~~~~~~~~  297 (411)
                      +.. .++.|.|+|+.+++...
T Consensus       387 v~n~~s~~VsVID~~t~kvv~  407 (426)
T 3c75_H          387 ALSAGTQTLHIYDAATGEELR  407 (426)
T ss_dssp             EEETTTTEEEEEETTTCCEEE
T ss_pred             EEcCCCCeEEEEECCCCCEEE
Confidence            887 58999999999998764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.27  E-value=3.7e-09  Score=95.05  Aligned_cols=231  Identities=9%  Similarity=-0.006  Sum_probs=148.4

Q ss_pred             ccccCCCCCCeEEEEEcCCCCE-EEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           37 TAFSDVDEIELISVSWNQDYGC-FAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        37 ~~~~~~h~~~V~~l~~s~~g~~-la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      ...+...........|+|+|+. ++++. ++.|..|+... + .....  .....+..+.+++++.++++...+     +
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~-~~~~~--~~~~~~~gl~~d~dG~l~v~~~~~-----~  107 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T-VDVLL--DATAFTNGNAVDAQQRLVHCEHGR-----R  107 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C-EEEEE--ESCSCEEEEEECTTSCEEEEETTT-----T
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C-EEEEe--CCCCccceeeECCCCCEEEEECCC-----C
Confidence            3445556667789999999994 45555 88999998743 2 22221  233446677888888877776554     7


Q ss_pred             eEEEEECCCCcEEEEEee-----cCceeEEEEcCCeEEEEEc--------------------CeEEEEEcCCceeeEEEe
Q 015198          115 KVIIWDDHQSRCIGEFAF-----RSDVRSVKLSRDRIVVVLE--------------------HKIYVYSFVDLKLLHQIE  169 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~d--------------------g~i~iwd~~~~~~~~~~~  169 (411)
                      .|.+|+.. ++.......     ...+.++.++++|.+.+.|                    +.|+.||..+++..... 
T Consensus       108 ~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-  185 (305)
T 3dr2_A          108 AITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-  185 (305)
T ss_dssp             EEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred             EEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence            89999975 654332221     2356789999999888732                    56888887666654333 


Q ss_pred             ccCCCcceEEEccCCCceEEEEecCC-----CCeEEEEEcCCcceE---EE-eccccceeEEEecCCCCEEEEEcCCCeE
Q 015198          170 TLANLRGLCCLSHHSSTSVLACPGLQ-----RGQVRIEHFGLNMIK---LI-NAHDSHIACFTLTLDGLLLATASTRGTL  240 (411)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~l~~~g~~-----dg~i~i~~~~~~~~~---~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~  240 (411)
                       ...  ....+.+++++..|+++...     .+.|.+++.....+.   .+ .........++++++|++.+ +. .+. 
T Consensus       186 -~~~--~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~-~~g-  259 (305)
T 3dr2_A          186 -DLD--HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SS-GTG-  259 (305)
T ss_dssp             -EES--SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CC-SSE-
T ss_pred             -cCC--CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ec-CCc-
Confidence             222  23345566666666554433     267877665432221   11 11234456789999999544 44 446 


Q ss_pred             EEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      |.+||. +++.+..+...  . .+.+++|+++++.|+.++.++ ++.++
T Consensus       260 v~~~~~-~g~~~~~~~~~--~-~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          260 VCVFDS-DGQLLGHIPTP--G-TASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             EEEECT-TSCEEEEEECS--S-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             EEEECC-CCCEEEEEECC--C-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            999997 68888777752  2 588999999999888888765 44444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.20  E-value=7e-09  Score=103.77  Aligned_cols=237  Identities=11%  Similarity=0.010  Sum_probs=146.3

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC---CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC---NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA  131 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~  131 (411)
                      +..+++++ |+.|..+|.++++.+.......+......+...|   ++.++++.+....-.++.|..||..+|+.+..+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            45777788 9999999999988877765420110000111111   4555555432000023899999999999998876


Q ss_pred             ec--C------------------------------ceeEEEEcCCeEEEE---EcC-------------------eEEEE
Q 015198          132 FR--S------------------------------DVRSVKLSRDRIVVV---LEH-------------------KIYVY  157 (411)
Q Consensus       132 ~~--~------------------------------~i~~~~~~~~~~~~~---~dg-------------------~i~iw  157 (411)
                      ..  .                              ....+.++++..++.   .++                   .|..+
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            21  0                              012467777544444   333                   49999


Q ss_pred             EcCCceeeEEEeccCCC---------cceEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEEEeccc-----------
Q 015198          158 SFVDLKLLHQIETLANL---------RGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHD-----------  216 (411)
Q Consensus       158 d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~-----------  216 (411)
                      |.++|+.+..+......         .....+..++...-+++.++.+|.+++++. +++.+.......           
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            99999999888653221         111122222221123345778999999665 444442221100           


Q ss_pred             ----------------------------cceeEEEecCCCCEEEEEcC--------------------------------
Q 015198          217 ----------------------------SHIACFTLTLDGLLLATAST--------------------------------  236 (411)
Q Consensus       217 ----------------------------~~i~~l~~sp~g~~l~s~s~--------------------------------  236 (411)
                                                  ..-..++|+|+..++++...                                
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                                        00113688888887776522                                


Q ss_pred             -------------CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          237 -------------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       237 -------------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                                   +|. |+.||+.+|+.+..+..+   .++..-.+...+.+++.++.||.|+.||.++|+..
T Consensus       441 ~~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGK-LIAWDPVKQQAAWEVPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             SSHHHHHHHHTTCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccCCCCCCCccee-EEEEECCCCCeEeEccCC---CCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence                         377 999999999998888752   22333355567789999999999999999999864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.19  E-value=4.2e-09  Score=96.42  Aligned_cols=241  Identities=7%  Similarity=-0.019  Sum_probs=150.0

Q ss_pred             CCeEEEEEcCCCCEEEEEe---CCcEEEEecCCCcceEEe-----ecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           45 IELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRR-----DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~---dg~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..+..++++++|+++++..   ++.++||.++. ......     ....+-..+..+.+++++.+++.........+..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999988864   34367777653 222211     01123456788889988876665322000001789


Q ss_pred             EEEECCCCcEEEEEeec-------CceeEEEEcCC-eEEEE--E----cCeEEEEEcCCceeeEEEeccCC---------
Q 015198          117 IIWDDHQSRCIGEFAFR-------SDVRSVKLSRD-RIVVV--L----EHKIYVYSFVDLKLLHQIETLAN---------  173 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~-------~~i~~~~~~~~-~~~~~--~----dg~i~iwd~~~~~~~~~~~~~~~---------  173 (411)
                      .+||+.+++.+..+...       ..+..++++++ +.+.+  .    ++.|.+||+.+++..+.+..+..         
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99999999988777632       34689999974 44444  2    46899999988876655432110         


Q ss_pred             ------------------CcceEEEccCCCceEEEEecCCCCeEEEEEcC----Cc-----ce--EEEeccccceeEEEe
Q 015198          174 ------------------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG----LN-----MI--KLINAHDSHIACFTL  224 (411)
Q Consensus       174 ------------------~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~----~~-----~~--~~~~~~~~~i~~l~~  224 (411)
                                        ......+++++++..|+++......+...+..    ..     ..  ....++......+++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence                              01234456666776666544333344443221    00     00  012234445678999


Q ss_pred             cCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198          225 TLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF  288 (411)
Q Consensus       225 sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vw  288 (411)
                      +++|.++++...++. |.+||..+++........ ....+.+++|.++++++++.+..+.+.+|
T Consensus       256 d~~G~l~va~~~~~~-V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          256 DKDHNIYVGDLAHSA-IGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             CTTCCEEEEEGGGTE-EEEEETTTTEEEEEEECG-GGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             CCCCCEEEEccCCCe-EEEEECCCCCEEEEEECC-ceecCCeeEECCCCcEEEEeCcccccccc
Confidence            999999999888898 999998567643333321 23468999999999888777655544433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.19  E-value=3.5e-09  Score=97.15  Aligned_cols=230  Identities=11%  Similarity=0.027  Sum_probs=143.1

Q ss_pred             EEEcCCCCEEEEEe------CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecC----------CCCCCCC
Q 015198           50 VSWNQDYGCFAAGT------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG----------DNSQYPP  113 (411)
Q Consensus        50 l~~s~~g~~la~g~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~d~~~~d  113 (411)
                      ....|+++.+++..      ++.|.++|..+.+.+.....  +...  .+.++|++..+..+.          .+     
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v--G~~P--~va~spDG~~lyVan~~~~r~~~G~~~-----  108 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--GFLP--NPVVADDGSFIAHASTVFSRIARGERT-----  108 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEE-----
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC--CCCC--cEEECCCCCEEEEEcccccccccCCCC-----
Confidence            45578998888876      35899999988766555543  2222  277888876544332          23     


Q ss_pred             CeEEEEECCCCcEEEEEeec--------CceeEEEEcCCeEEEE---E--cCeEEEEEcCCceeeEEEeccCCCcceEEE
Q 015198          114 TKVIIWDDHQSRCIGEFAFR--------SDVRSVKLSRDRIVVV---L--EHKIYVYSFVDLKLLHQIETLANLRGLCCL  180 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~---~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  180 (411)
                      +.|.+||..+++.+.++...        .....+.++|||+++.   .  ++.|.++|+.+++.+.++....    +..+
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~  184 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHI  184 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----ccee
Confidence            78999999999999988742        2566799999998766   2  5789999999999999886532    1222


Q ss_pred             ccCCCceEEEEecCCCCeEEEEEcC--CcceEEEecc----cccee-EEEec-CCCCEEEEEcCCCeEEEEEECCCCc--
Q 015198          181 SHHSSTSVLACPGLQRGQVRIEHFG--LNMIKLINAH----DSHIA-CFTLT-LDGLLLATASTRGTLIRIFNTVDGT--  250 (411)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~i~i~~~~--~~~~~~~~~~----~~~i~-~l~~s-p~g~~l~s~s~dg~~I~vwd~~~~~--  250 (411)
                      .+.+...+++.  +.||.+.+.+..  ++.......+    ..++. ...|. ++|++++ .+.+|. |++.|+.++.  
T Consensus       185 ~P~g~~~~~~~--~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~~  260 (386)
T 3sjl_D          185 FPTAPDTFFMH--CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDAK  260 (386)
T ss_dssp             EEEETTEEEEE--ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSCE
T ss_pred             ecCCCceeEEE--CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcce
Confidence            23332233332  245665553332  2222111111    12221 23553 6786555 555788 9999987654  


Q ss_pred             eEEEEe--------CCCCCcceEEEEeCCCCCEEEEEeC----------CCcEEEEEccccccC
Q 015198          251 RLQEVR--------RGVDRAEIYSIALSPNVQWLAVASD----------KGTVHIFSLRVRVVG  296 (411)
Q Consensus       251 ~~~~~~--------~~~~~~~v~~l~~spdg~~l~s~s~----------dg~I~vwd~~~~~~~  296 (411)
                      .+..+.        .+........++++++++.|+....          .+.|.+.|+.+++..
T Consensus       261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~  324 (386)
T 3sjl_D          261 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL  324 (386)
T ss_dssp             ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred             eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence            222232        1101223345778999998887653          246999999988754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.18  E-value=2.7e-08  Score=93.24  Aligned_cols=194  Identities=9%  Similarity=0.010  Sum_probs=124.8

Q ss_pred             EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcC--eEEEEEcCCce
Q 015198           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEH--KIYVYSFVDLK  163 (411)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg--~i~iwd~~~~~  163 (411)
                      ....+++++++.++++...+     +.|++||..+++............ ++|++++..++   .++  .|++++...+.
T Consensus       132 ~P~~la~d~~g~lyv~d~~~-----~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDD-----PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTT-----TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CceEEEEeCCCCEEEEecCC-----CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            45677788888888877665     899999988777665555433344 99999987555   223  89999986654


Q ss_pred             eeEEEe---c-cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEe-----ccccce--eEEEecCC-CCEE
Q 015198          164 LLHQIE---T-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN-----AHDSHI--ACFTLTLD-GLLL  231 (411)
Q Consensus       164 ~~~~~~---~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~-----~~~~~i--~~l~~sp~-g~~l  231 (411)
                      ....+.   . ...  ....++.+++...|++ ...++.|+.++........+.     ++...-  ..++|+|+ +.++
T Consensus       206 ~~~~~g~~~~~~~~--~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          206 APTRIGQLGSTFSG--KIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             CEEEEEECCTTSCS--CCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             eeEEeeeccchhcC--CcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            433331   1 222  2233444552233434 345788888887765544441     122222  38999995 6666


Q ss_pred             EEEcCCCeEEEEEECCCCceEEEEeCCC-------------CCcceEEEEeCCCCCEEEEEe-CCCcEEEEEccccc
Q 015198          232 ATASTRGTLIRIFNTVDGTRLQEVRRGV-------------DRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRV  294 (411)
Q Consensus       232 ~s~s~dg~~I~vwd~~~~~~~~~~~~~~-------------~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~  294 (411)
                      ++-..++. |+.|+.. ++ +..+.+..             .-.....++++++|+++++-. .++.|+.|++.++.
T Consensus       283 v~d~~~~~-I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          283 MSDQNLSS-VYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEETTTTE-EEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             EEeCCCCE-EEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            66666777 9999964 44 33333311             013478999999999777777 78899999987665

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.16  E-value=9.3e-10  Score=101.31  Aligned_cols=167  Identities=10%  Similarity=0.063  Sum_probs=121.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCc-----------ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK-----------ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      +++.+++++...++++|+...+.+|+++...           ......   ... +..+.|  ++..++.+ .+     +
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~---lp~-V~~l~f--d~~~L~v~-~~-----~  106 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE---IPD-VIFVCF--HGDQVLVS-TR-----N  106 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE---CTT-EEEEEE--ETTEEEEE-ES-----S
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee---CCC-eeEEEE--CCCEEEEE-cC-----C
Confidence            6999999999999999995577889976433           112222   223 777888  54555555 55     9


Q ss_pred             eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      .|++||+.+........ +...+.++.+.+....++ .||.|.+||+.+++... +   ..  .+.+++|+++|  +++ 
T Consensus       107 ~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-~---~~--~Vs~v~WSpkG--~~v-  177 (388)
T 1xip_A          107 ALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-L---AQ--NVTSFDVTNSQ--LAV-  177 (388)
T ss_dssp             EEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-E---EE--SEEEEEECSSE--EEE-
T ss_pred             cEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-c---cC--CceEEEEcCCc--eEE-
Confidence            99999988776555554 677888888877654444 79999999998877653 2   12  56778888888  333 


Q ss_pred             cCCCCeEEEEEcCCcc---eEEE------e---ccccceeEEEecCCCCEEEE
Q 015198          193 GLQRGQVRIEHFGLNM---IKLI------N---AHDSHIACFTLTLDGLLLAT  233 (411)
Q Consensus       193 g~~dg~i~i~~~~~~~---~~~~------~---~~~~~i~~l~~sp~g~~l~s  233 (411)
                      |..||.+++|...+..   ...+      .   +|...|.+|.|.+++.+|++
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            5579999998877766   4445      2   37788999999999998886

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.16  E-value=2.7e-09  Score=107.24  Aligned_cols=196  Identities=8%  Similarity=0.081  Sum_probs=126.0

Q ss_pred             CCEEEEEEeccCCeEEEE-----ecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---Ec------
Q 015198           86 GGFRIVEMLFRCNILALV-----GAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE------  151 (411)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~-----s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d------  151 (411)
                      +...+..+.|+|++..++     +|++.     ..|++||+.+++.+...........++|+ |++.++   .+      
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~-----~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDW-----REIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCE-----EEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCce-----EEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccc
Confidence            445677788999998776     34433     78999999999976542222224577899 887666   33      


Q ss_pred             -------CeEEEEEcCCcee--eEEEeccC-CCcceEEEccCCCceEEEEecC---CCCeEEEEEcCCc--ceEEEeccc
Q 015198          152 -------HKIYVYSFVDLKL--LHQIETLA-NLRGLCCLSHHSSTSVLACPGL---QRGQVRIEHFGLN--MIKLINAHD  216 (411)
Q Consensus       152 -------g~i~iwd~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~---~dg~i~i~~~~~~--~~~~~~~~~  216 (411)
                             ..|++|++.++..  ...+.... .+.....+.+++++++|+++..   ....|++++....  ....+..+.
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~  280 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL  280 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence                   2499999977543  22333222 2334566777888887765432   2357888776543  566677676


Q ss_pred             cceeEEEecCCCCEEE-EEcCC---CeEEEEEECCCCce--EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC---cEEE
Q 015198          217 SHIACFTLTLDGLLLA-TASTR---GTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHI  287 (411)
Q Consensus       217 ~~i~~l~~sp~g~~l~-s~s~d---g~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~I~v  287 (411)
                      ...... ++++|..|+ ....+   +. |.++|+.++..  ...+..  +...+.  .|++++++|+....++   .|++
T Consensus       281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~-l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~  354 (693)
T 3iuj_A          281 DADVSL-VDNKGSTLYLLTNRDAPNRR-LVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARVEQ  354 (693)
T ss_dssp             SSCEEE-EEEETTEEEEEECTTCTTCE-EEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred             CceEEE-EeccCCEEEEEECCCCCCCE-EEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence            666555 566666554 44433   56 99999988754  345555  333444  8899999887666544   6889


Q ss_pred             EEcccc
Q 015198          288 FSLRVR  293 (411)
Q Consensus       288 wd~~~~  293 (411)
                      |+++.+
T Consensus       355 ~d~~g~  360 (693)
T 3iuj_A          355 FDYEGK  360 (693)
T ss_dssp             ECTTSC
T ss_pred             EECCCC
Confidence            988744

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.14  E-value=1.2e-08  Score=101.96  Aligned_cols=236  Identities=9%  Similarity=-0.010  Sum_probs=148.9

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecC-CCC--EEEE-EEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEE
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLK-SGG--FRIV-EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF  130 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~  130 (411)
                      +..|++++ |+.+..+|..+++.+...... ...  ..+. .... .++.++++......-.++.|+.+|..+|+.+..+
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            55777777 999999999998888777652 100  0111 0111 1344555443200001389999999999999888


Q ss_pred             eecCc---------------------------------eeEEEEcCCeEEEE---EcC-------------------eEE
Q 015198          131 AFRSD---------------------------------VRSVKLSRDRIVVV---LEH-------------------KIY  155 (411)
Q Consensus       131 ~~~~~---------------------------------i~~~~~~~~~~~~~---~dg-------------------~i~  155 (411)
                      .....                                 ...+.+++++..+.   .++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            73111                                 12467777654444   222                   599


Q ss_pred             EEEcCCceeeEEEeccCCC---------cceEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEEEeccc---------
Q 015198          156 VYSFVDLKLLHQIETLANL---------RGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHD---------  216 (411)
Q Consensus       156 iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~---------  216 (411)
                      .+|.++|+.+..+....+.         ........+++..-+++.++.+|.+++++. +++.+..+....         
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~  366 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK  366 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence            9999999999888653221         111222222211123345778999999665 455554443211         


Q ss_pred             --cce------------------------eEEEecCCCCEEEEEcC----------------------------------
Q 015198          217 --SHI------------------------ACFTLTLDGLLLATAST----------------------------------  236 (411)
Q Consensus       217 --~~i------------------------~~l~~sp~g~~l~s~s~----------------------------------  236 (411)
                        .++                        ..++|+|++.++++...                                  
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  446 (677)
T 1kb0_A          367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF  446 (677)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred             CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence              011                        15688998888877543                                  


Q ss_pred             ---------CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          237 ---------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       237 ---------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                               .+. |..||+.+++.+..+..   ..++....+..++.+++.++.||.+++||..+++..
T Consensus       447 ~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          447 NAEPPKSKPFGR-LLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             CSSCCCSCCEEE-EEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccCCCCCccE-EEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence                     167 99999999999888764   234445556677888899999999999999999865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.13  E-value=3.4e-08  Score=91.46  Aligned_cols=221  Identities=10%  Similarity=0.033  Sum_probs=133.1

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~  134 (411)
                      +..+++++ ++.|..+|.++++......+.......  .... ++.+++.. .+     +.|..+|..+|+.+..+....
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~--p~~~-~~~v~v~~-~~-----g~l~~~d~~tG~~~W~~~~~~  173 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSR--PVVS-DGLVLIHT-SN-----GQLQALNEADGAVKWTVNLDM  173 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSC--CEEE-TTEEEEEC-TT-----SEEEEEETTTCCEEEEEECCC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcC--CEEE-CCEEEEEc-CC-----CeEEEEECCCCcEEEEEeCCC
Confidence            44666677 899999999988877766553221111  1111 34444443 33     899999999999998887443


Q ss_pred             ce------eEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcc-----e--EEEccC-CCceEEEEecCCCCe
Q 015198          135 DV------RSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRG-----L--CCLSHH-SSTSVLACPGLQRGQ  198 (411)
Q Consensus       135 ~i------~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~--~~~~~~-~~~~~l~~~g~~dg~  198 (411)
                      .+      ...... ++.+++  .++.|..+|..+++.+...........     .  ....+. .++ .+++ ++.++.
T Consensus       174 ~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~v~~-~~~~g~  250 (376)
T 3q7m_A          174 PSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNG-VVFA-LAYNGN  250 (376)
T ss_dssp             -----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETT-EEEE-ECTTSC
T ss_pred             CceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECC-EEEE-EecCcE
Confidence            33      222333 344444  588999999999998877754321000     0  000000 122 3333 446777


Q ss_pred             EEEEEc-CCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEE
Q 015198          199 VRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA  277 (411)
Q Consensus       199 i~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  277 (411)
                      +..++. +++.+....  ......+..  ++..|+.++.++. |..+|..+|+.+...... ....+.....  .+..|+
T Consensus       251 l~~~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~tG~~~w~~~~~-~~~~~~~~~~--~~~~l~  322 (376)
T 3q7m_A          251 LTALDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDR-VMALTIDGGVTLWTQSDL-LHRLLTSPVL--YNGNLV  322 (376)
T ss_dssp             EEEEETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCC-EEEEETTTCCEEEEECTT-TTSCCCCCEE--ETTEEE
T ss_pred             EEEEECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCe-EEEEECCCCcEEEeeccc-CCCcccCCEE--ECCEEE
Confidence            777655 455444333  222334443  4567777888899 999999999988776521 1112222222  246788


Q ss_pred             EEeCCCcEEEEEccccccC
Q 015198          278 VASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       278 s~s~dg~I~vwd~~~~~~~  296 (411)
                      .++.+|.|+++|..+++..
T Consensus       323 v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          323 VGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             EECTTSEEEEEETTTCCEE
T ss_pred             EEeCCCeEEEEECCCCcEE
Confidence            8999999999999998743

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.13  E-value=8.5e-10  Score=101.56  Aligned_cols=170  Identities=15%  Similarity=0.129  Sum_probs=117.6

Q ss_pred             EEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc-----------EEEEEeecCceeEEEEcCCeEEEE--EcCeEEE
Q 015198           90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-----------CIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYV  156 (411)
Q Consensus        90 ~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~i  156 (411)
                      +..++.++...++++++.      ..+++|++...+           ......+.. |..++|  ++.+++  .++.|++
T Consensus        40 ~nlLais~~~gll~a~~~------~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v  110 (388)
T 1xip_A           40 LQNLDISNSKSLFVAASG------SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYS  110 (388)
T ss_dssp             CBCEEEETTTTEEEEEET------TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEE
T ss_pred             ccEEEEcCCCCEEEEeCC------CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEE
Confidence            444556665555556555      467779854322           223445667 999999  555555  8999999


Q ss_pred             EEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC
Q 015198          157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST  236 (411)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~  236 (411)
                      ||+.+.........+..+  +..+.+.+..  +++ +..||.|.+|+........   +...|++++|+|+|  ++.|..
T Consensus       111 ~dv~sl~~~~~~~~~~~~--v~~i~~~~p~--~av-~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~  180 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKP--VFQLKNVNNT--LVI-LNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLK  180 (388)
T ss_dssp             EESSSTTCEEEEEECSSC--EEEEEECSSE--EEE-EETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEET
T ss_pred             EEchhhhccCccceeecc--eeeEEecCCC--EEE-EECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEc
Confidence            999876655555555543  3455555443  443 3479999999987554432   45689999999999  678899


Q ss_pred             CCeEEEEEECCCCce--EEEEeC-------CCCCcceEEEEeCCCCCEEEEE
Q 015198          237 RGTLIRIFNTVDGTR--LQEVRR-------GVDRAEIYSIALSPNVQWLAVA  279 (411)
Q Consensus       237 dg~~I~vwd~~~~~~--~~~~~~-------~~~~~~v~~l~~spdg~~l~s~  279 (411)
                      ||. |++|+...++.  ..++..       ..|...|.+|.|.+++.+|++=
T Consensus       181 dg~-i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          181 DRS-FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             TSC-EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCc-EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            999 99999877775  566621       0155789999999999988863

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.11  E-value=3.9e-09  Score=95.65  Aligned_cols=262  Identities=13%  Similarity=0.030  Sum_probs=158.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      .+.++...++|. |.+++++ +..||. +.+...........  ....... ++.+.++.. +     +.|..+|.. ++
T Consensus        61 ~~~~~~~~~~g~-l~v~t~~-l~~~d~-~g~~~~~~~~~~~~--~~~~~~~-~~~l~v~t~-~-----~~l~~~d~~-g~  127 (330)
T 3hxj_A           61 IECRPSIGKDGT-IYFGSDK-VYAINP-DGTEKWRFDTKKAI--VSDFTIF-EDILYVTSM-D-----GHLYAINTD-GT  127 (330)
T ss_dssp             EEECCEETTTTE-ECCSSCE-EEEECC-CGGGGGGSCC-------CCEEEE-TTEEEEECT-T-----SEEEEECTT-SC
T ss_pred             cccceEEecCCc-EEEecCc-EEEECC-CCcEEEEEECCCCc--ccCceEE-CCEEEEEec-C-----CEEEEEcCC-CC
Confidence            346666666664 5555644 777775 33333222221111  1111112 454544433 3     899999987 88


Q ss_pred             EEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEE
Q 015198          126 CIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE  202 (411)
Q Consensus       126 ~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~  202 (411)
                      ...... ....+.++...+++.+.+  .++.|+.+|.. ++.+..+......+.  .+..+.++.+.+  ++  +.|..+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~--~~~~d~~g~l~v--~t--~~l~~~  200 (330)
T 3hxj_A          128 EKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITS--AASIGKDGTIYF--GS--DKVYAI  200 (330)
T ss_dssp             EEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCS--CCEECTTCCEEE--ES--SSEEEE
T ss_pred             EEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCcee--eeEEcCCCEEEE--Ee--CEEEEE
Confidence            777666 444566777887777666  46999999988 877777765443333  333444555544  33  566666


Q ss_pred             EcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198          203 HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK  282 (411)
Q Consensus       203 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d  282 (411)
                      +.+++...........+.++...++|.+ ..++.++. |..+| .+++.+..+..  ....+..+.+.+++. |..++.+
T Consensus       201 d~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~g-l~~~~-~~g~~~~~~~~--~~~~~~~~~~~~~g~-l~v~t~~  274 (330)
T 3hxj_A          201 NPDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGH-LYAIN-PDGTEKWRFKT--GKRIESSPVIGNTDT-IYFGSYD  274 (330)
T ss_dssp             CTTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTE-EEEEC-TTSCEEEEEEC--SSCCCSCCEECTTSC-EEEECTT
T ss_pred             CCCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCe-EEEEC-CCCCEeEEeeC--CCCccccceEcCCCe-EEEecCC
Confidence            6666666666655667888889888864 45666777 88888 46777766664  233344455665664 6677888


Q ss_pred             CcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCce
Q 015198          283 GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTH  362 (411)
Q Consensus       283 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (411)
                      |.|..+|. +++..                                                        ..+.++....
T Consensus       275 ggl~~~d~-~g~~~--------------------------------------------------------~~~~~~~~~~  297 (330)
T 3hxj_A          275 GHLYAINP-DGTEK--------------------------------------------------------WNFETGSWII  297 (330)
T ss_dssp             CEEEEECT-TSCEE--------------------------------------------------------EEEECSSCCC
T ss_pred             CCEEEECC-CCcEE--------------------------------------------------------EEEEcCCccc
Confidence            88999884 44321                                                        1233333333


Q ss_pred             EEEEEccCCEEEEEEeCCcEEEEEEecC
Q 015198          363 FIAAFGSQNTVVIVSMDGSFYRCSFDPV  390 (411)
Q Consensus       363 ~~~~~~~~~~~~~~~~dg~~~~~~~~~~  390 (411)
                      ..+....++.|.+++.+|.+++.....+
T Consensus       298 ~~~~~d~~g~l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          298 ATPVIDENGTIYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             SCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred             cceEEcCCCEEEEEcCCCeEEEEecccc
Confidence            3445567789999999999998876653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.11  E-value=2.6e-08  Score=89.43  Aligned_cols=190  Identities=12%  Similarity=0.001  Sum_probs=115.5

Q ss_pred             EEEEEeccCCeE-EEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-E--cCeEEEEEcCCce
Q 015198           89 RIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-L--EHKIYVYSFVDLK  163 (411)
Q Consensus        89 ~~~~~~~~~~~~-~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~--dg~i~iwd~~~~~  163 (411)
                      ......|++++. ++++...+     +.|..|+. +++. ..+. ....+..+.+++++++++ .  ++.|.+|+.. ++
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~-----~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVG-----RRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTT-----TEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CccCCeEeCCCCEEEEEECCC-----CEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence            344567777764 55555555     89999997 5553 3443 567789999999998777 2  4689999975 55


Q ss_pred             eeEEEeccCC--CcceEEEccCCCceEEEEe---cCC-------------CCeEEEEEcCCcceEEEeccccceeEEEec
Q 015198          164 LLHQIETLAN--LRGLCCLSHHSSTSVLACP---GLQ-------------RGQVRIEHFGLNMIKLINAHDSHIACFTLT  225 (411)
Q Consensus       164 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~---g~~-------------dg~i~i~~~~~~~~~~~~~~~~~i~~l~~s  225 (411)
                      ..........  ......+..++++.++++.   |..             .+.|+.++.....+..+. .......++|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~s  196 (305)
T 3dr2_A          118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFS  196 (305)
T ss_dssp             EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEEC
T ss_pred             EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEc
Confidence            3322211111  0112234555667666531   211             234555555333333333 44556789999


Q ss_pred             CCCCEEEEEcCC------CeEEEEEECCCCce--EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          226 LDGLLLATASTR------GTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       226 p~g~~l~s~s~d------g~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      |+++.|+.+...      +. |++|++..+..  ...+... ....+..++++++|++. +++.+| |.+|+.+
T Consensus       197 pdg~~lyv~~~~~~~~~~~~-i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lw-v~~~~g-v~~~~~~  266 (305)
T 3dr2_A          197 PDEQTLYVSQTPEQGHGSVE-ITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLW-SSSGTG-VCVFDSD  266 (305)
T ss_dssp             TTSSEEEEEECCC---CCCE-EEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEE-ECCSSE-EEEECTT
T ss_pred             CCCCEEEEEecCCcCCCCCE-EEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEE-EecCCc-EEEECCC
Confidence            999987777665      67 99999876541  1122211 23345678999999954 444555 9999873

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.03  E-value=4.1e-07  Score=84.05  Aligned_cols=221  Identities=10%  Similarity=0.049  Sum_probs=135.8

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCC-------CEEE-EEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcE
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSG-------GFRI-VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~  126 (411)
                      +..+++++ ++.|..+|.++++......+...       ...+ ...... ++.+++... +     +.|..+|..+|+.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~-~-----g~l~a~d~~tG~~  125 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS-GGHVYIGSE-K-----AQVYALNTSDGTV  125 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE-TTEEEEEET-T-----SEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe-CCEEEEEcC-C-----CEEEEEECCCCCE
Confidence            55677777 89999999998887777665221       1122 222233 344444433 3     8999999999999


Q ss_pred             EEEEeecCcee-EEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCc-----ceEEEccCCCceEEEEecCCCCe
Q 015198          127 IGEFAFRSDVR-SVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLR-----GLCCLSHHSSTSVLACPGLQRGQ  198 (411)
Q Consensus       127 ~~~~~~~~~i~-~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~g~~dg~  198 (411)
                      +........+. ..... ++.+++  .++.|+.+|..+++.+..+.......     ....+.   ++ .+++ +..++.
T Consensus       126 ~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~-~v~~-g~~~g~  199 (376)
T 3q7m_A          126 AWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FG-AAVV-GGDNGR  199 (376)
T ss_dssp             EEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TT-EEEE-CCTTTE
T ss_pred             EEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CC-EEEE-EcCCCE
Confidence            88887443332 22333 444444  68999999999999888776543211     111111   22 3333 567888


Q ss_pred             EEEEEc-CCcceEEEeccccc----eeE---EEecC--CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198          199 VRIEHF-GLNMIKLINAHDSH----IAC---FTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       199 i~i~~~-~~~~~~~~~~~~~~----i~~---l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (411)
                      +..++. +++.+.........    +..   +.-.|  .+..++.++.++. +..+|..+|+.+......    ....+.
T Consensus       200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG~~~w~~~~~----~~~~~~  274 (376)
T 3q7m_A          200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSGQIMWKRELG----SVNDFI  274 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTCCEEEEECCC----CEEEEE
T ss_pred             EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCCcEEeeccCC----CCCCce
Confidence            887665 45555444322100    000   00111  2456777888899 999999999988776532    234444


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          269 LSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       269 ~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      .  ++..|+.++.++.|..+|..+++..
T Consensus       275 ~--~~~~l~~~~~~g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          275 V--DGNRIYLVDQNDRVMALTIDGGVTL  300 (376)
T ss_dssp             E--ETTEEEEEETTCCEEEEETTTCCEE
T ss_pred             E--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence            4  3567888889999999999998743

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.03  E-value=1.6e-08  Score=92.84  Aligned_cols=217  Identities=7%  Similarity=-0.071  Sum_probs=132.3

Q ss_pred             cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecC----------CCCCCCCCeEEEEECCCCcEEEEEeec--
Q 015198           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG----------DNSQYPPTKVIIWDDHQSRCIGEFAFR--  133 (411)
Q Consensus        66 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~d~~~~d~~i~vwd~~~~~~~~~~~~~--  133 (411)
                      .|.++|.++.+.+-......  ..  .+.+++++..+..+.          .+     +.|.+||+.+++.+.++...  
T Consensus        47 ~vsvID~~t~~v~~~i~vG~--~P--~i~~spDg~~lyVan~~~~r~~~G~~~-----~~VsviD~~T~~vv~~I~v~~~  117 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF--LS--LAVAGHSGSDFALASTSFARSAKGKRT-----DYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT--TC--EEEECTTSSCEEEEEEEETTTTSSSEE-----EEEEEECTTTCCEEEEEEETTS
T ss_pred             eEEEEECCCCeEEEEEeCCC--CC--ceEECCCCCEEEEEcccccccccCCCC-----CEEEEEECCCCCEEEEEECCCc
Confidence            78899999877666555422  22  577888765444332          23     89999999999999998743  


Q ss_pred             ------CceeEEEEcCCeEEEE--E---cCeEEE--EEcCCceeeEEEeccCCC-c----ceEEEccCCCceE-------
Q 015198          134 ------SDVRSVKLSRDRIVVV--L---EHKIYV--YSFVDLKLLHQIETLANL-R----GLCCLSHHSSTSV-------  188 (411)
Q Consensus       134 ------~~i~~~~~~~~~~~~~--~---dg~i~i--wd~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~-------  188 (411)
                            .....+.++||+++++  .   +..|.+  +|+.+   +..+...... +    ...-+...+++.+       
T Consensus       118 ~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcc
Confidence                  3467899999998776  2   357888  88865   3334221100 0    0000111111111       


Q ss_pred             ------------------------------EEEecCCCCeEEEEEcCCcc---eEEEec-------c---ccceeEEEec
Q 015198          189 ------------------------------LACPGLQRGQVRIEHFGLNM---IKLINA-------H---DSHIACFTLT  225 (411)
Q Consensus       189 ------------------------------l~~~g~~dg~i~i~~~~~~~---~~~~~~-------~---~~~i~~l~~s  225 (411)
                                                    +++.. . +.+.+-+.....   +..+..       +   ......++++
T Consensus       195 ~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs-~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s  272 (368)
T 1mda_H          195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL  272 (368)
T ss_dssp             SCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred             ccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc-C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence                                          11211 1 344442222111   111100       0   0111227899


Q ss_pred             CCCCEEEEEcC-C--------CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCE-EEEEe-CCCcEEEEEccccc
Q 015198          226 LDGLLLATAST-R--------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW-LAVAS-DKGTVHIFSLRVRV  294 (411)
Q Consensus       226 p~g~~l~s~s~-d--------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s-~dg~I~vwd~~~~~  294 (411)
                      |+++.++.+.. .        +. +.++|+.+++.+..+..+   .....|+|+|||++ +++.. .++.|.|+|+.+++
T Consensus       273 ~dg~~lyV~~~~~~~~~~~~~~~-~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          273 KNTDGIMILTVEHSRSCLAAAEN-TSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEE-EEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CCCCEEEEEeccccCcccccCCC-EEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            99998876543 2        35 679999999998888752   26889999999984 55666 58999999999998


Q ss_pred             cCCCCC
Q 015198          295 VGEDSS  300 (411)
Q Consensus       295 ~~~~~~  300 (411)
                      ....+.
T Consensus       349 vv~~I~  354 (368)
T 1mda_H          349 DQSSVE  354 (368)
T ss_dssp             EEEECC
T ss_pred             EEEEEE
Confidence            765443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.96  E-value=5.2e-07  Score=90.05  Aligned_cols=225  Identities=8%  Similarity=0.029  Sum_probs=132.9

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCE---------EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF---------RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      +..|++++ ++.|.-+|..+++.+.+........         ....+... ++.+++. ..+     +.|..+|..+|+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~v~v~-~~d-----g~l~alD~~tG~  149 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKVYVG-AWD-----GRLIALDAATGK  149 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEEEEE-CTT-----SEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE-CCEEEEE-cCC-----CEEEEEECCCCC
Confidence            44566666 8899999999888887766532110         00111222 3344444 333     999999999999


Q ss_pred             EEEEEeec------CceeE-EEEcCCeEEEE--E------cCeEEEEEcCCceeeEEEeccCCCc---------------
Q 015198          126 CIGEFAFR------SDVRS-VKLSRDRIVVV--L------EHKIYVYSFVDLKLLHQIETLANLR---------------  175 (411)
Q Consensus       126 ~~~~~~~~------~~i~~-~~~~~~~~~~~--~------dg~i~iwd~~~~~~~~~~~~~~~~~---------------  175 (411)
                      .+..+...      ..+.+ ..+. ++.+++  .      ++.|+.||..+|+.+..+.......               
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~  228 (677)
T 1kb0_A          150 EVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART  228 (677)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             EEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence            99888743      12222 2222 445555  2      6899999999999998886533210               


Q ss_pred             ---------------ceEEEccCCCceEEEEecCCCC-------------------eEEEEEc-CCcceEEEec--cc--
Q 015198          176 ---------------GLCCLSHHSSTSVLACPGLQRG-------------------QVRIEHF-GLNMIKLINA--HD--  216 (411)
Q Consensus       176 ---------------~~~~~~~~~~~~~l~~~g~~dg-------------------~i~i~~~-~~~~~~~~~~--~~--  216 (411)
                                     ....++.++++..+++ +..++                   .|..++. +++.+..++.  |.  
T Consensus       229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~-~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w  307 (677)
T 1kb0_A          229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYV-GTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW  307 (677)
T ss_dssp             SCGGGCHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             ccccCceeEeCCCcccccceeEcCCCCEEEE-ECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence                           0011233344444443 32332                   3555443 4555555543  21  


Q ss_pred             -----cceeEEEecCCC---CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC---------cce---------------
Q 015198          217 -----SHIACFTLTLDG---LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR---------AEI---------------  264 (411)
Q Consensus       217 -----~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~---------~~v---------------  264 (411)
                           .....+....+|   ..|+.++.+|. |+++|..+|+.+..+......         .++               
T Consensus       308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~-l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~  386 (677)
T 1kb0_A          308 DYTSTQPMILADIKIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV  386 (677)
T ss_dssp             CCCCCSCCEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred             ccccCCCcEEEecccCCcEeeEEEEECCCCE-EEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence                 112223333477   68899999999 999999999998877632100         011               


Q ss_pred             ---------EEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198          265 ---------YSIALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       265 ---------~~l~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                               ..++|+|++.++++...+-...++..
T Consensus       387 P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~  421 (677)
T 1kb0_A          387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDD  421 (677)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEEC
T ss_pred             cCcccccCCCCceEcCCCCEEEEeChhcceeeecc
Confidence                     14678898888888776654455544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.93  E-value=8.6e-07  Score=88.65  Aligned_cols=227  Identities=11%  Similarity=0.081  Sum_probs=131.6

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCE--------E-EEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--------R-IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      +..|++++ ++.|.-+|..+++.+.+........        . ...+... ++.+++.. .|     +.|..+|.++|+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~v~v~~-~d-----g~l~AlDa~TG~  142 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW-KGKVYVGV-LD-----GRLEAIDAKTGQ  142 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEEC-TT-----SEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE-CCEEEEEc-cC-----CEEEEEECCCCC
Confidence            45666666 8899999999988888765422110        0 0011112 33444443 34     999999999999


Q ss_pred             EEEEEeec-C--ceeEEEEcC---CeEEEE-E-------cCeEEEEEcCCceeeEEEeccC-CCc---------------
Q 015198          126 CIGEFAFR-S--DVRSVKLSR---DRIVVV-L-------EHKIYVYSFVDLKLLHQIETLA-NLR---------------  175 (411)
Q Consensus       126 ~~~~~~~~-~--~i~~~~~~~---~~~~~~-~-------dg~i~iwd~~~~~~~~~~~~~~-~~~---------------  175 (411)
                      .+..+... .  ....+...|   ++.+++ .       ++.|+.||.++|+.+..+.... .+.               
T Consensus       143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  222 (689)
T 1yiq_A          143 RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW  222 (689)
T ss_dssp             EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred             EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence            99887743 1  111111122   555555 2       6899999999999998876311 000               


Q ss_pred             -------------ceEEEccCCCceEEEEecCCCC-------------------eEEEEE-cCCcceEEEec--cc----
Q 015198          176 -------------GLCCLSHHSSTSVLACPGLQRG-------------------QVRIEH-FGLNMIKLINA--HD----  216 (411)
Q Consensus       176 -------------~~~~~~~~~~~~~l~~~g~~dg-------------------~i~i~~-~~~~~~~~~~~--~~----  216 (411)
                                   ....++.+++..++++ +..++                   .|..++ .+++.+-.++.  |.    
T Consensus       223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~-~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~  301 (689)
T 1yiq_A          223 FGDAYVEQGGGGTAWDSFAYDPELNLLYI-GVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY  301 (689)
T ss_dssp             CSSTHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred             CCceeeecCCCCccccceeEcCCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence                         0002333444444444 44444                   255555 45666666553  21    


Q ss_pred             ---cceeEEEecCCCC---EEEEEcCCCeEEEEEECCCCceEEEEeCCCCC--------------------------c--
Q 015198          217 ---SHIACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRLQEVRRGVDR--------------------------A--  262 (411)
Q Consensus       217 ---~~i~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~--------------------------~--  262 (411)
                         .+.....+..+|+   .|+.++.+|. ++++|..+|+.+.........                          .  
T Consensus       302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~  380 (689)
T 1yiq_A          302 TATQHMILAELPIDGKPRKVLMQAPKNGF-FYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNL  380 (689)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEE
T ss_pred             cCCCCcEEEeeccCCcEEEEEEEECCCCe-EEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeE
Confidence               1122222223665   7889999999 999999999988554421100                          0  


Q ss_pred             ---------ceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          263 ---------EIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       263 ---------~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                               .-..++|+|+..+|++...+....++...
T Consensus       381 ~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~  418 (689)
T 1yiq_A          381 VTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIP  418 (689)
T ss_dssp             ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCS
T ss_pred             eCCCcccccCCCcceECCCCCEEEEeccccceeeeecc
Confidence                     01126888988888888776555555433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.93  E-value=2.9e-06  Score=78.55  Aligned_cols=190  Identities=12%  Similarity=0.068  Sum_probs=121.1

Q ss_pred             eEEEEecCCCCCCCCCeEEEEECCCC----cEEEEEe--------ecCceeEEEEcCCeEEEE--Ec------CeEEEEE
Q 015198           99 ILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA--------FRSDVRSVKLSRDRIVVV--LE------HKIYVYS  158 (411)
Q Consensus        99 ~~~l~s~~~d~~~~d~~i~vwd~~~~----~~~~~~~--------~~~~i~~~~~~~~~~~~~--~d------g~i~iwd  158 (411)
                      ..+++++..+     +.|.++|+.+.    +.++.+.        ....-..+...|++.++.  .+      +.|.++|
T Consensus        96 ~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           96 RFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEEC
T ss_pred             CEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEE
Confidence            3455666665     99999998765    6666663        112455678889994444  33      6899999


Q ss_pred             cCCceeeEEEeccCCCc-ceEEEccCCCceEEEEec------------------CCCCeEEEEEcCCc-ceEEEecc--c
Q 015198          159 FVDLKLLHQIETLANLR-GLCCLSHHSSTSVLACPG------------------LQRGQVRIEHFGLN-MIKLINAH--D  216 (411)
Q Consensus       159 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g------------------~~dg~i~i~~~~~~-~~~~~~~~--~  216 (411)
                      .++++.+..+.....+. ....+.++++++.++++.                  .....|.+|+.... .+..+...  .
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            99999999886443321 122244455566666642                  13678999888653 44455442  1


Q ss_pred             cceeEEEe--cCCCCEEEEEcC-----CCeEEEEEECCCCce--EEEEeCCCC----------------CcceEEEEeCC
Q 015198          217 SHIACFTL--TLDGLLLATAST-----RGTLIRIFNTVDGTR--LQEVRRGVD----------------RAEIYSIALSP  271 (411)
Q Consensus       217 ~~i~~l~~--sp~g~~l~s~s~-----dg~~I~vwd~~~~~~--~~~~~~~~~----------------~~~v~~l~~sp  271 (411)
                      .....+.|  +|+++++++++.     ....|.+|....++.  +..+.....                ......|.+|+
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            23345545  999998888775     442388776655432  122111000                13467899999


Q ss_pred             CCCEEEEEeC-CCcEEEEEcccc
Q 015198          272 NVQWLAVASD-KGTVHIFSLRVR  293 (411)
Q Consensus       272 dg~~l~s~s~-dg~I~vwd~~~~  293 (411)
                      ||++|+++.. .+.|.+||+...
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSST
T ss_pred             CCCEEEEEeCCCCEEEEEEecCC
Confidence            9999987765 678999999744

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.90  E-value=1.9e-07  Score=84.42  Aligned_cols=218  Identities=9%  Similarity=-0.022  Sum_probs=143.3

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ec
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FR  133 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~  133 (411)
                      +..|.+++ ++.+..+|.+ .........  ....+..+...+++.++++. .+     +.|..+|.. ++.+..+. ..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~--~~~~~~~~~~~~~g~l~vgt-~~-----~~l~~~d~~-g~~~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKT--KKAIYATPIVSEDGTIYVGS-ND-----NYLYAINPD-GTEKWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEEC--SSCCCSCCEECTTSCEEEEC-TT-----SEEEEECTT-SCEEEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcC--CCceeeeeEEcCCCEEEEEc-CC-----CEEEEECCC-CCEeEEEecCC
Confidence            44567777 8999999987 455444443  22223333445566555544 33     899999988 88877776 45


Q ss_pred             CceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEE
Q 015198          134 SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI  212 (411)
Q Consensus       134 ~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~  212 (411)
                      ..+.++...+++.+.+ . +.|+.+| .+++.+..+......+  .++..++++.+.+.  +.++.|..++.+++.+..+
T Consensus       177 ~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~--~~~~~~~~g~l~v~--t~~~gl~~~~~~g~~~~~~  250 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTV--TRPAISEDGTIYVT--SLDGHLYAINPDGTEKWRF  250 (330)
T ss_dssp             CCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCC--SCCEECTTSCEEEE--ETTTEEEEECTTSCEEEEE
T ss_pred             CceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcce--eceEECCCCeEEEE--cCCCeEEEECCCCCEeEEe
Confidence            5677788877887777 6 9999999 7777776665444333  33444555555543  3566777766667766666


Q ss_pred             eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       213 ~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      ......+..+.+.+++. |..++.++. |..+|. +++.+..+..  ....+.++...++|+ |..++.+|.+++...+.
T Consensus       251 ~~~~~~~~~~~~~~~g~-l~v~t~~gg-l~~~d~-~g~~~~~~~~--~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          251 KTGKRIESSPVIGNTDT-IYFGSYDGH-LYAINP-DGTEKWNFET--GSWIIATPVIDENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             ECSSCCCSCCEECTTSC-EEEECTTCE-EEEECT-TSCEEEEEEC--SSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred             eCCCCccccceEcCCCe-EEEecCCCC-EEEECC-CCcEEEEEEc--CCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence            65555555666766665 666777888 999995 7887777664  344567777777876 56688999999988766


Q ss_pred             ccc
Q 015198          293 RVV  295 (411)
Q Consensus       293 ~~~  295 (411)
                      .++
T Consensus       325 ~~~  327 (330)
T 3hxj_A          325 HHH  327 (330)
T ss_dssp             ---
T ss_pred             ccc
Confidence            543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.90  E-value=2.4e-06  Score=74.12  Aligned_cols=196  Identities=12%  Similarity=0.045  Sum_probs=134.8

Q ss_pred             EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC--ceeEEEEcCCeEEEE--EcCeEEEEEcCCcee
Q 015198           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS--DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKL  164 (411)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~  164 (411)
                      ....+.+++++.++++.+..   ..+.|.++|+.+++.+..+....  ....+.+..+..+++  .++.+.++|..+++.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~---~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLY---GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             CEEEEEECSTTEEEEEECST---TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE
T ss_pred             CcccEEEeCCCeEEEECCCC---CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE
Confidence            34567788866666665431   12899999999999999887433  334567776666666  589999999999999


Q ss_pred             eEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccc--c---ceeEEEecCCCCEEEEEcCCC
Q 015198          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHD--S---HIACFTLTLDGLLLATASTRG  238 (411)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~--~---~i~~l~~sp~g~~l~s~s~dg  238 (411)
                      +..+... .+ ....++++++  .++++. .++.|.+.+.. .+.+..+....  .   .++.+.|. +|++.+....++
T Consensus        99 ~~~i~~g-~~-~g~glt~Dg~--~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~  172 (266)
T 2iwa_A           99 IKNFTHQ-MK-DGWGLATDGK--ILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD  172 (266)
T ss_dssp             EEEEECC-SS-SCCEEEECSS--SEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             EEEEECC-CC-CeEEEEECCC--EEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence            9998654 12 2244666543  333333 46788885544 45555554322  1   35678887 776555555677


Q ss_pred             eEEEEEECCCCceEEEEeCCC-----------CCcceEEEEeCCCCCEE-EEEeCCCcEEEEEccccc
Q 015198          239 TLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWL-AVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       239 ~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l-~s~s~dg~I~vwd~~~~~  294 (411)
                      . |.+.|..+++.+..+....           .......|+|+|+++.| +++...+.|.+.++....
T Consensus       173 ~-V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          173 C-IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             E-EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             e-EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            7 9999999999998887420           01256899999998755 555577889999988764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.90  E-value=6.4e-08  Score=92.65  Aligned_cols=233  Identities=9%  Similarity=0.007  Sum_probs=149.0

Q ss_pred             CCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEec-c-CCeEEEEecCCC-------------CCCCCCeE
Q 015198           54 QDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLF-R-CNILALVGAGDN-------------SQYPPTKV  116 (411)
Q Consensus        54 ~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~s~~~d-------------~~~~d~~i  116 (411)
                      +||++|.+..  ++.|.+.|+++.+......+... .....+.+ . |++.++..+++.             +...++.+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence            4899998877  67799999998765543444222 23444444 2 555444443211             01123689


Q ss_pred             EEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E-c--------------------------------------CeEE
Q 015198          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L-E--------------------------------------HKIY  155 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-d--------------------------------------g~i~  155 (411)
                      .++|..+.+.+.++...+....++++|++++++  . +                                      +.|.
T Consensus       178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            999999999999988655677888999887776  1 1                                      1355


Q ss_pred             EEEcCC--cee-eEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-------------ceEEEeccccce
Q 015198          156 VYSFVD--LKL-LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-------------MIKLINAHDSHI  219 (411)
Q Consensus       156 iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-------------~~~~~~~~~~~i  219 (411)
                      +.|.++  ++. +..+.....   ..++.++||++++++++..+..|.+++....             .+..+. -....
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~---PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP  333 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANN---PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGP  333 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESS---CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCE
T ss_pred             EEeCcccCCceeEEEEecCCC---ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCc
Confidence            666655  333 444443322   2335556677888888888899999777643             122222 23446


Q ss_pred             eEEEecCCCCEEEEEcCCCeEEEEEECCC----------CceEEEEeCCCCCcce---EEEEeCCCCCEEEEEeC---CC
Q 015198          220 ACFTLTLDGLLLATASTRGTLIRIFNTVD----------GTRLQEVRRGVDRAEI---YSIALSPNVQWLAVASD---KG  283 (411)
Q Consensus       220 ~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------~~~~~~~~~~~~~~~v---~~l~~spdg~~l~s~s~---dg  283 (411)
                      ..++|+|+|....+.-.|+. |.+||+.+          .+.+.++..+...+..   ..+.++|||++|+++..   |+
T Consensus       334 ~h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr  412 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR  412 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred             ceEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence            78999999954556667888 99999977          5677777763221111   12356799999998764   33


Q ss_pred             cE-----------EEEEcccc
Q 015198          284 TV-----------HIFSLRVR  293 (411)
Q Consensus       284 ~I-----------~vwd~~~~  293 (411)
                       +           .++|+..+
T Consensus       413 -~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          413 -FLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             -SCCCCSSCCEEEEEEECSSS
T ss_pred             -cccCCCCCCCcceEEEcCCC
Confidence             4           88999443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.87  E-value=4.6e-07  Score=88.56  Aligned_cols=236  Identities=8%  Similarity=-0.039  Sum_probs=139.7

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCE--EEE-EEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--RIV-EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA  131 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~  131 (411)
                      +..+++++ ++.+..+|..+++.+....+..+..  .+. ..... ++.++++......-.++.|..+|..+|+.+..+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            44677777 8999999999888877766522110  110 00011 4455555432000012899999999999998887


Q ss_pred             ecCce---------------------------------------eEEEEcCC-eEEEE-E-c----------------Ce
Q 015198          132 FRSDV---------------------------------------RSVKLSRD-RIVVV-L-E----------------HK  153 (411)
Q Consensus       132 ~~~~i---------------------------------------~~~~~~~~-~~~~~-~-d----------------g~  153 (411)
                      .....                                       ..+++.++ +.+.+ . +                +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            32211                                       12455553 33333 2 1                26


Q ss_pred             EEEEEcCCceeeEEEeccCCC-------cceEEEccCCCce--EEEEecCCCCeEEEEE-cCCcceEEEeccc-------
Q 015198          154 IYVYSFVDLKLLHQIETLANL-------RGLCCLSHHSSTS--VLACPGLQRGQVRIEH-FGLNMIKLINAHD-------  216 (411)
Q Consensus       154 i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~l~~~g~~dg~i~i~~-~~~~~~~~~~~~~-------  216 (411)
                      |..+|.++|+.+..++...+.       ...+.+....+++  .+++.++.+|.+++.+ .+++.+..+....       
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~  353 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccc
Confidence            999999999999888653211       1111122112342  2333466788888855 4555554443211       


Q ss_pred             ------cce--------------------------eEEEecCCCCEEEEEc-----------------------------
Q 015198          217 ------SHI--------------------------ACFTLTLDGLLLATAS-----------------------------  235 (411)
Q Consensus       217 ------~~i--------------------------~~l~~sp~g~~l~s~s-----------------------------  235 (411)
                            .++                          ..++++|+..+|++..                             
T Consensus       354 ~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  433 (571)
T 2ad6_A          354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence                  111                          2357788877776653                             


Q ss_pred             --------CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          236 --------TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       236 --------~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                              .++. |..||+.+++.+.++...   ..+....+...+..++.++.||.|+.||.++++..
T Consensus       434 ~~~~~~~~~~g~-l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          434 GPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             CTTSTTSCCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CccccCCCCCCe-EEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence                    3467 999999999998887642   12222222334567778999999999999999854

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.87  E-value=1.8e-06  Score=74.08  Aligned_cols=193  Identities=13%  Similarity=0.127  Sum_probs=128.6

Q ss_pred             CCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCce--eEEEEcCCeEEEE--EcCeEEEEEcCC
Q 015198           86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDV--RSVKLSRDRIVVV--LEHKIYVYSFVD  161 (411)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~--~dg~i~iwd~~~  161 (411)
                      .......+.|+ ++.++.+.+.+   ....|+++|+++++.+..+......  ..+.+..+..+++  .++.+.+||..+
T Consensus        41 ~~~ftqGL~~~-~~~LyestG~~---g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t  116 (262)
T 3nol_A           41 TKAFTEGFFYR-NGYFYESTGLN---GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN  116 (262)
T ss_dssp             TTCEEEEEEEE-TTEEEEEEEET---TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             CCcccceEEEE-CCEEEEECCCC---CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence            33444556677 45666665553   1138999999999999998865554  3466777766666  599999999999


Q ss_pred             ceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEecc--c---cceeEEEecCCCCEEEEEc
Q 015198          162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAH--D---SHIACFTLTLDGLLLATAS  235 (411)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~--~---~~i~~l~~sp~g~~l~s~s  235 (411)
                      .+.+.++......   ..++++.  ..|+.+. .++.|.+.+.. .+.+..+...  .   ..++.+.|. +|++.+...
T Consensus       117 ~~~~~ti~~~~eG---~glt~dg--~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w  189 (262)
T 3nol_A          117 LRQVRSFNYDGEG---WGLTHND--QYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW  189 (262)
T ss_dssp             CCEEEEEECSSCC---CCEEECS--SCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             CcEEEEEECCCCc---eEEecCC--CEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence            9999999765432   3344443  4444433 35678875544 5556665442  2   234557776 777666665


Q ss_pred             CCCeEEEEEECCCCceEEEEeCCC----------CCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          236 TRGTLIRIFNTVDGTRLQEVRRGV----------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       236 ~dg~~I~vwd~~~~~~~~~~~~~~----------~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      .++. |.+.|.++|+.+..+....          .....+.|+|+|+++.|++.+..= =++|.++
T Consensus       190 ~~~~-I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W-p~~~ev~  253 (262)
T 3nol_A          190 QTNK-IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW-PKVFEIT  253 (262)
T ss_dssp             TSSE-EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC-SEEEEEE
T ss_pred             cCCe-EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC-CceEEEE
Confidence            6777 9999999999998887521          113568999999988777666432 3444443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.85  E-value=8.2e-07  Score=88.54  Aligned_cols=236  Identities=11%  Similarity=0.026  Sum_probs=142.7

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCC--EEEE-EEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGG--FRIV-EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA  131 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~  131 (411)
                      +..+++++ ++.|..+|.++++.+.........  ..+. .... .++.+++.......-.++.|..+|..+|+.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            45677777 999999999998888776652110  0000 0001 14455554332100023899999999999998886


Q ss_pred             ec--Cc------------------------------eeEEEEcCCeEEEE---EcC-------------------eEEEE
Q 015198          132 FR--SD------------------------------VRSVKLSRDRIVVV---LEH-------------------KIYVY  157 (411)
Q Consensus       132 ~~--~~------------------------------i~~~~~~~~~~~~~---~dg-------------------~i~iw  157 (411)
                      ..  .+                              ...++++++...+.   .++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            21  00                              12357776543333   333                   49999


Q ss_pred             EcCCceeeEEEeccCC---------CcceEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEEEeccc-----------
Q 015198          158 SFVDLKLLHQIETLAN---------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHD-----------  216 (411)
Q Consensus       158 d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~-----------  216 (411)
                      |.++|+.+..+.....         +.....+..+++..-+++.++.+|.+++.+. +++.+.......           
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            9999999988875322         1122223333332223445778999999654 455543222111           


Q ss_pred             -cc------------------------eeEEEecCCCCEEEEE------------------------------------c
Q 015198          217 -SH------------------------IACFTLTLDGLLLATA------------------------------------S  235 (411)
Q Consensus       217 -~~------------------------i~~l~~sp~g~~l~s~------------------------------------s  235 (411)
                       .+                        -..++++|+..+++..                                    .
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence             00                        0125777776665541                                    1


Q ss_pred             CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      .+|. |..||+.+|+.+......   .......+...+.++++++.|+.|+.||.++++..
T Consensus       436 ~~g~-l~A~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          436 VSGA-LLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             CEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccce-EEEEeCCCCcEEEEccCC---CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence            2377 999999999998777642   22333344456788899999999999999998854

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.84  E-value=6.5e-06  Score=72.07  Aligned_cols=218  Identities=7%  Similarity=-0.093  Sum_probs=130.3

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEEC
Q 015198           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      ..+..++|++++..|..+.  .+.|..++.+.......  +.........+.+++ ++.++++....     +.|.++++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~~~~~~p~~ia~d~~~~~lyv~d~~~-----~~I~~~~~  108 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI--IRQDLGSPEGIALDHLGRTIFWTDSQL-----DRIEVAKM  108 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE--ECTTCCCEEEEEEETTTTEEEEEETTT-----TEEEEEET
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE--EECCCCCccEEEEEecCCeEEEEECCC-----CEEEEEEc
Confidence            3567999999877777666  78899999876432211  212223456666776 34555555444     89999997


Q ss_pred             CCCcEEEEEee-cCceeEEEEcCC-eEEEE-E----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          122 HQSRCIGEFAF-RSDVRSVKLSRD-RIVVV-L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       122 ~~~~~~~~~~~-~~~i~~~~~~~~-~~~~~-~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      ........... ......++++|+ +.+.+ .    .+.|..+++.. +....+... .......++.++++..|.++..
T Consensus       109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~  186 (267)
T 1npe_A          109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQD-NLGLPNGLTFDAFSSQLCWVDA  186 (267)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECT-TCSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEEC-CCCCCcEEEEcCCCCEEEEEEC
Confidence            65433222222 246789999994 55444 2    36888888753 333333211 1123445555555445555555


Q ss_pred             CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC
Q 015198          195 QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (411)
Q Consensus       195 ~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (411)
                      ..+.|.+.+..+.....+.........+++. ++.++++....+. |.++|..+++.+..+..+ .......+++.|++.
T Consensus       187 ~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~-v~~~d~~~g~~~~~i~~g-~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          187 GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPH-KQTRLYGITIALSQC  263 (267)
T ss_dssp             TTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTE-EEEEETTTTEEEEEECCS-SCCCCCCEEEECSCC
T ss_pred             CCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCe-EEEEeCCCCCceEEEccc-cccccceeeecCccC
Confidence            6778888777665443332222333566654 3434444445577 999999999998888753 112467788888764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.81  E-value=4.2e-06  Score=81.83  Aligned_cols=233  Identities=7%  Similarity=-0.028  Sum_probs=135.8

Q ss_pred             EEEEe-CCcEEEEecCCCcceEEeecCCCCE--EEEE-EeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198           59 FAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--RIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (411)
Q Consensus        59 la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~  134 (411)
                      |++++ |+.+.-+|..+++.+....+.....  .+.. ... .++.+++..+.+..-.++.|+.+|.++|+.+..+....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~  202 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence            77777 9999999999888877765422100  0100 001 14455555431000012899999999999998887332


Q ss_pred             ce---------------------------------------eEEEEcCCe-EEEE--Ec----------------CeEEE
Q 015198          135 DV---------------------------------------RSVKLSRDR-IVVV--LE----------------HKIYV  156 (411)
Q Consensus       135 ~i---------------------------------------~~~~~~~~~-~~~~--~d----------------g~i~i  156 (411)
                      ..                                       ..+++.++. .+++  .+                +.|..
T Consensus       203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A  282 (599)
T 1w6s_A          203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (599)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence            21                                       123444433 3333  22                48999


Q ss_pred             EEcCCceeeEEEeccCCCc-------ceEEEccC-CCc--eEEEEecCCCCeEEEEE-cCCcceEEEeccc---------
Q 015198          157 YSFVDLKLLHQIETLANLR-------GLCCLSHH-SST--SVLACPGLQRGQVRIEH-FGLNMIKLINAHD---------  216 (411)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~--~~l~~~g~~dg~i~i~~-~~~~~~~~~~~~~---------  216 (411)
                      +|.++|+.+..++...+..       ..+.+... .++  ..+++.++.+|.+++.+ .+++.+.......         
T Consensus       283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~  362 (599)
T 1w6s_A          283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD  362 (599)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred             EeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc
Confidence            9999999998887643321       11112111 233  13334466889988855 4555544433110         


Q ss_pred             ----cce--------------------------eEEEecCCCCEEEEE--------------------------------
Q 015198          217 ----SHI--------------------------ACFTLTLDGLLLATA--------------------------------  234 (411)
Q Consensus       217 ----~~i--------------------------~~l~~sp~g~~l~s~--------------------------------  234 (411)
                          .++                          ..++++|+..++++.                                
T Consensus       363 ~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p  442 (599)
T 1w6s_A          363 LKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGP  442 (599)
T ss_dssp             TTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred             cCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCC
Confidence                111                          235667766655442                                


Q ss_pred             -c------CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          235 -S------TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       235 -s------~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                       +      ..|. |..||+.+|+.+.+....   .+...-.+...+.+++.++.|+.|+.||.++|+..
T Consensus       443 ~~~~~~~~~~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          443 KGDRQNYEGLGQ-IKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             TSBTTTTBCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCcccCCCcCe-EEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence             1      3467 999999999988777532   11211112235667778999999999999999864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.81  E-value=2.2e-07  Score=84.87  Aligned_cols=200  Identities=8%  Similarity=0.027  Sum_probs=120.6

Q ss_pred             EEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--------ecCceeEEEEcCCeEEEEE--------c
Q 015198           88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--------FRSDVRSVKLSRDRIVVVL--------E  151 (411)
Q Consensus        88 ~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~--------d  151 (411)
                      .....+.+++++.++++....   .++.++||.+.+++ +..+.        +-..+..+++++++++.+.        +
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~---~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQF---YQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGG---GCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CCcceEEECCCCCEEEEeCCC---CCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            456677788888777774321   01324555544554 22221        2357899999999877662        3


Q ss_pred             CeEEEEEcCCceeeEEEeccCC----CcceEEEccCCCceEEEEecC---CCCeEEEEEcCC-cceEEEecc--------
Q 015198          152 HKIYVYSFVDLKLLHQIETLAN----LRGLCCLSHHSSTSVLACPGL---QRGQVRIEHFGL-NMIKLINAH--------  215 (411)
Q Consensus       152 g~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~g~---~dg~i~i~~~~~-~~~~~~~~~--------  215 (411)
                      ..|.+||+.+++.+..+.....    ......+..++++..+.++..   .++.|.+++... +..+.+..|        
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            6899999999998877764321    011223333433223333443   567888877653 322222221        


Q ss_pred             ---------------------ccceeEEEecCCCCEEEEEcCCCeEEEEEECC---CCc--------eEEEEeCCCCCcc
Q 015198          216 ---------------------DSHIACFTLTLDGLLLATASTRGTLIRIFNTV---DGT--------RLQEVRRGVDRAE  263 (411)
Q Consensus       216 ---------------------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~---~~~--------~~~~~~~~~~~~~  263 (411)
                                           ...+..|+|+|+|+.|+.+...+..|..++..   .+.        .+..+ +  +...
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g--~~g~  249 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-S--EKPI  249 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-E--ECCS
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-c--cCCC
Confidence                                 02357899999999888887766326666532   111        01111 1  2224


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      ...++++++|.++++...++.|.+||..+++
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence            5678999999999998889999999984443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.80  E-value=8e-10  Score=102.24  Aligned_cols=170  Identities=12%  Similarity=-0.017  Sum_probs=94.0

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC-CceEE
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS-STSVL  189 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l  189 (411)
                      +.|+.||..+|+.+..+.. ..+.+..+..++.+++   .|+.|+.||.++|+.+..+..+...  ....++.- .+..+
T Consensus        19 g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~--~~~~sp~~~~~~~v   95 (369)
T 2hz6_A           19 GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE--LVQASPCRSSDGIL   95 (369)
T ss_dssp             SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH--HHTTCSCC-----C
T ss_pred             CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc--ccccCceEecCCEE
Confidence            9999999999999988887 5565555566664444   5999999999998887665432110  00111111 12233


Q ss_pred             EEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEE
Q 015198          190 ACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (411)
                      + .|+.++.|+.++.. ++.+..+..+.    ...++|++..|++++.++. |+.||.++|+.+..+...    ......
T Consensus        96 ~-~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~~----~~~~~~  165 (369)
T 2hz6_A           96 Y-MGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTRELRWNATYF----DYAASL  165 (369)
T ss_dssp             C-CCEEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSSSCCCEEEEE----EECCBC
T ss_pred             E-EEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCCCEEEeEecc----cccCcc
Confidence            3 46678889887754 56655555443    2345678888999999999 999999999887665531    122233


Q ss_pred             eCCCC---CEEEEEeCCCcEEEEEccccccC
Q 015198          269 LSPNV---QWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       269 ~spdg---~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +..+.   ..+++++.||.|+.||.++|+..
T Consensus       166 ~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          166 PEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             CCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             ccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence            44432   45777889999999999998754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.80  E-value=7.2e-06  Score=71.78  Aligned_cols=229  Identities=9%  Similarity=-0.025  Sum_probs=132.6

Q ss_pred             CCEEEEEeCCcEEEEecCCCcceE---EeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe
Q 015198           56 YGCFAAGTSCGFRIYNCEPFKETF---RRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA  131 (411)
Q Consensus        56 g~~la~g~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~  131 (411)
                      |.+|+.+..+.|+.++++......   ...+.........+.+++ ++.++++....     +.|..+++..+.....+.
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~~~~   75 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTIIR   75 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEEC
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCC-----CEEEEEecCCCCcEEEEE
Confidence            346666665678888887533210   001111123456777776 45555555544     899999987665433333


Q ss_pred             e-cCceeEEEEcCC-eEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC--CCeEEEEEc
Q 015198          132 F-RSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ--RGQVRIEHF  204 (411)
Q Consensus       132 ~-~~~i~~~~~~~~-~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--dg~i~i~~~  204 (411)
                      . ......++++++ +.+.+   ..+.|.++++.... ...+.... ......+..++++..|.++...  .+.|...+.
T Consensus        76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~  153 (267)
T 1npe_A           76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM  153 (267)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred             CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence            2 256789999985 44444   46789999986432 22232111 1133455555533333333322  467777666


Q ss_pred             CCcceEEEe-ccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE-eC
Q 015198          205 GLNMIKLIN-AHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA-SD  281 (411)
Q Consensus       205 ~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~  281 (411)
                      ++.....+. ..-.....+++++++..|+.+. ..+. |.++|+........+..   ......++..  +..|+.+ ..
T Consensus       154 dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~  227 (267)
T 1npe_A          154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWK  227 (267)
T ss_dssp             TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETT
T ss_pred             CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECC
Confidence            665544443 2334568899999877665554 4566 99999865444333333   1234566654  4445444 45


Q ss_pred             CCcEEEEEccccccCC
Q 015198          282 KGTVHIFSLRVRVVGE  297 (411)
Q Consensus       282 dg~I~vwd~~~~~~~~  297 (411)
                      .+.|.++|..+++...
T Consensus       228 ~~~v~~~d~~~g~~~~  243 (267)
T 1npe_A          228 TNSVIAMDLAISKEMD  243 (267)
T ss_dssp             TTEEEEEETTTTEEEE
T ss_pred             CCeEEEEeCCCCCceE
Confidence            6789999999887543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.80  E-value=4.4e-06  Score=75.39  Aligned_cols=234  Identities=10%  Similarity=-0.009  Sum_probs=139.7

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCC------------------CCEEEEEEeccC-CeEEEEec
Q 015198           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKS------------------GGFRIVEMLFRC-NILALVGA  105 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~-~~~~l~s~  105 (411)
                      ...+++|.++|+++.++. ++.|..|+.+..... ......                  .......+.+.+ ++.++++.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            456788999999788887 899999987653221 111000                  012356677776 66666654


Q ss_pred             CCCCCCCCCeEEEEECCCCcEEEEEe------ecCceeEEEEcC-CeEEEEEc--------------------CeEEEEE
Q 015198          106 GDNSQYPPTKVIIWDDHQSRCIGEFA------FRSDVRSVKLSR-DRIVVVLE--------------------HKIYVYS  158 (411)
Q Consensus       106 ~~d~~~~d~~i~vwd~~~~~~~~~~~------~~~~i~~~~~~~-~~~~~~~d--------------------g~i~iwd  158 (411)
                      ..      +.|..+|..+++. ..+.      .......+++.+ ++.+.+.|                    +.|+.||
T Consensus        99 ~~------~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           99 CY------YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             TT------TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             CC------CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence            43      4588888665532 2222      113467899999 88776621                    5688899


Q ss_pred             cCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc---ceEEEeccccceeEEEecCCCCEEEEEc
Q 015198          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDGLLLATAS  235 (411)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~s~s  235 (411)
                      ..+++..........   ...+++++++..|.++-...+.|..++..+.   ....+....+ ...++++++|++.++..
T Consensus       172 ~~~~~~~~~~~~~~~---p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          172 PSTKETTLLLKELHV---PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             TTTTEEEEEEEEESC---CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEeccCCcc---CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence            877665433322222   2234455566555544445678888665542   2222222223 67899999998766654


Q ss_pred             C----------CCeEEEEEECCCCceEEEEeCCCC--CcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          236 T----------RGTLIRIFNTVDGTRLQEVRRGVD--RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       236 ~----------dg~~I~vwd~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .          .+. |..+|. .++.+..+.....  ...+..+++ .+++++++....+.|.++++....
T Consensus       248 ~~~~~~~~~~~~~~-v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          248 EELDGNMHGRVDPK-GIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             EETTSSTTSCEEEE-EEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred             CcccccccCCCccE-EEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence            4          456 888886 5887777764211  234666766 456655555567789999986544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.80  E-value=3.7e-06  Score=72.21  Aligned_cols=176  Identities=10%  Similarity=0.097  Sum_probs=120.3

Q ss_pred             EEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeE--EEEcCCeEEEE--EcCeEEEEEcCCceee
Q 015198           90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRS--VKLSRDRIVVV--LEHKIYVYSFVDLKLL  165 (411)
Q Consensus        90 ~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~--~dg~i~iwd~~~~~~~  165 (411)
                      ...+.|+.+ .++.+.+.+     +.|+++|+++++.+..+ .......  +.+..+..+++  .++.+.+||..+++.+
T Consensus        57 tqGL~~~~~-~Ly~stG~~-----g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           57 TQGLVFHQG-HFFESTGHQ-----GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             EEEEEEETT-EEEEEETTT-----TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             cceEEEECC-EEEEEcCCC-----CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEE
Confidence            345566654 555555555     88999999999998888 6555543  77777777776  5999999999999999


Q ss_pred             EEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEEEecc--cc---ceeEEEecCCCCEEEEEcCCCe
Q 015198          166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAH--DS---HIACFTLTLDGLLLATASTRGT  239 (411)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~--~~---~i~~l~~sp~g~~l~s~s~dg~  239 (411)
                      .++......   ..++++.  ..|+.+. .++.|.+.+. +.+.+..+...  ..   .++.+.|. +|++.+....+..
T Consensus       130 ~ti~~~~eG---wGLt~Dg--~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~  202 (268)
T 3nok_A          130 RTTRYSGEG---WGLCYWN--GKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD  202 (268)
T ss_dssp             EEEECSSCC---CCEEEET--TEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred             EEEeCCCce---eEEecCC--CEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence            999765432   3334443  4454443 4778888554 44555555432  22   34567776 7766665556777


Q ss_pred             EEEEEECCCCceEEEEeCC-----------CCCcceEEEEeCCCCCEEEEEe
Q 015198          240 LIRIFNTVDGTRLQEVRRG-----------VDRAEIYSIALSPNVQWLAVAS  280 (411)
Q Consensus       240 ~I~vwd~~~~~~~~~~~~~-----------~~~~~v~~l~~spdg~~l~s~s  280 (411)
                       |.+.|.++|+.+..+...           ......+.|+|+|+++.|++.+
T Consensus       203 -I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          203 -VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             -EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             -EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence             999999999999888642           0123568999999876665544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.79  E-value=4.6e-09  Score=97.10  Aligned_cols=216  Identities=12%  Similarity=0.033  Sum_probs=115.1

Q ss_pred             CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec
Q 015198           55 DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR  133 (411)
Q Consensus        55 ~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~  133 (411)
                      ++..+++++ |+.|..||..+++....... .   .+....+..++..++.++.|     +.|+.||..+|+.+..+...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~---~~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D---PVLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C---CSCCCC-----CCEEECTTT-----CCEEEC-----CCSEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C---CceecceEcCCCEEEEeCCC-----CEEEEEECCCCceeeeeecc
Confidence            467888888 99999999999888777654 1   12222233455556666666     99999999999877665521


Q ss_pred             --Ccee-EEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc-CCc
Q 015198          134 --SDVR-SVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLN  207 (411)
Q Consensus       134 --~~i~-~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~  207 (411)
                        ..+. +..+..++.+++  .++.|+.||.++|+.+..+..+..    ..+++  ++..+++ ++.++.|+.|+. +++
T Consensus        79 ~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v~~-~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           79 IPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLLYL-GRTEYTITMYDTKTRE  151 (369)
T ss_dssp             HHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------------------EEE-EEEEEEEECCCSSSSS
T ss_pred             CccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEEEE-EecCCEEEEEECCCCC
Confidence              1111 111113444443  689999999999999877765431    22333  3444544 557889988775 455


Q ss_pred             ceEEEeccccceeEEEecCCC---CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcce-EEEEeCCCCCEE----EEE
Q 015198          208 MIKLINAHDSHIACFTLTLDG---LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI-YSIALSPNVQWL----AVA  279 (411)
Q Consensus       208 ~~~~~~~~~~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v-~~l~~spdg~~l----~s~  279 (411)
                      .+..+..+.  ....++..+.   ..+++++.+|. |+.||..+|+.+..+..   ..++ ....++++|...    +.+
T Consensus       152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~---~~pv~~~~~~~~dg~~~v~~~~~~  225 (369)
T 2hz6_A          152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGL-VVTVDSESGDVLWIQNY---ASPVVAFYVWQREGLRKVMHINVA  225 (369)
T ss_dssp             CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCE-EEEECTTTCCEEEEEEC---SSCEEEEEECTTSSCEEECCEEEE
T ss_pred             EEEeEeccc--ccCccccCCccccceEEEECCCCE-EEEEECCCCcEEEEecC---CCceEEEEEecCCceEeccceeec
Confidence            544443221  1233344432   45677888999 99999999999888774   2344 344566676532    122


Q ss_pred             eCCCcEEEEEccccc
Q 015198          280 SDKGTVHIFSLRVRV  294 (411)
Q Consensus       280 s~dg~I~vwd~~~~~  294 (411)
                        ++.++.+|..+|+
T Consensus       226 --~~~l~~ld~~tG~  238 (369)
T 2hz6_A          226 --VETLRYLTFMSGE  238 (369)
T ss_dssp             --HHHHHHHHHHHHH
T ss_pred             --ccceeeeehhcCC
Confidence              4457778877776

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.77  E-value=2.8e-05  Score=79.34  Aligned_cols=236  Identities=13%  Similarity=0.143  Sum_probs=149.2

Q ss_pred             eEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        47 V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      |.++...+++.+.+ |+ ++.+..|+..+........ ......+.++....++.+.++...      +.|..||..+++
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~-~~~~~~i~~i~~d~~g~lwigt~~------~Gl~~~~~~~~~  246 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIP-ILGTKQIQAILQQSPTRIWVATEG------AGLFLINPKTKE  246 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTEEEEEEBS------SCEEEEETTTTE
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecC-CCCCCeeEEEEEcCCCCEEEEECC------CCeEEEeCCCCe
Confidence            88888888886555 55 6678889876533211111 112345666776667666665433      458889977765


Q ss_pred             EEEEEee---------cCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccC-----CCcceEEEccCCCceEEE
Q 015198          126 CIGEFAF---------RSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLA-----NLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       126 ~~~~~~~---------~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~  190 (411)
                      ... +.+         ...|.++...+++.+.+ .++.|.+||..+++.........     ....+.++..+.++.+.+
T Consensus       247 ~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi  325 (795)
T 4a2l_A          247 IKN-YLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL  325 (795)
T ss_dssp             EEE-ECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE
T ss_pred             EEE-eecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE
Confidence            433 322         35699999998887776 55689999987765443221110     112466777777777665


Q ss_pred             EecCCCCeEEEEEcCCcceEEEec-------cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC------
Q 015198          191 CPGLQRGQVRIEHFGLNMIKLINA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR------  257 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~------  257 (411)
                      .  ..++-|..++........+..       ....|.++...++|. |..|+.++. |..||..+++.......      
T Consensus       326 g--t~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~G-l~~~~~~~~~~~~~~~~~~~~~~  401 (795)
T 4a2l_A          326 G--TYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGG-LNLYNPITQRFTSYTLQEDESAR  401 (795)
T ss_dssp             E--ESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSC-EEEECTTTCCEEEECCC------
T ss_pred             E--ECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCC-eEEEcCCCCcEEEEecCCCCccc
Confidence            3  355566666554444333321       235689999988887 455777777 99999877664322111      


Q ss_pred             CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          258 GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       258 ~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      ......|.++...++|+.|..|+.++-|.+||.++++.
T Consensus       402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~  439 (795)
T 4a2l_A          402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV  439 (795)
T ss_dssp             CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred             CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence            11235799999988888566777766799999887653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.76  E-value=1.3e-05  Score=68.23  Aligned_cols=194  Identities=14%  Similarity=0.155  Sum_probs=127.4

Q ss_pred             CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCce--eEEEEcCCeEEEE--EcCeEEEEEcC
Q 015198           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDV--RSVKLSRDRIVVV--LEHKIYVYSFV  160 (411)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~--~dg~i~iwd~~  160 (411)
                      ........+.|+++. ++.+.+.+   ....|+.+|+.+++.+..+......  ..+.+..+..+++  .++.+.+||..
T Consensus        18 d~~~ftqGL~~~~~~-LyestG~~---g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           18 DTTAFTEGLFYLRGH-LYESTGET---GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             CTTCCEEEEEEETTE-EEEEECCT---TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             CCccccccEEEECCE-EEEECCCC---CCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence            344455567777754 44444442   1259999999999999998855444  3456666666666  69999999999


Q ss_pred             CceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc-CCcceEEEeccc-----cceeEEEecCCCCEEEEE
Q 015198          161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHD-----SHIACFTLTLDGLLLATA  234 (411)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~-----~~i~~l~~sp~g~~l~s~  234 (411)
                      +.+.+.++......   ..++++.  ..|+.+- .++.|.+.+. +.+.+..+....     ..++.+.+. +|++++..
T Consensus        94 tl~~~~ti~~~~~G---wglt~dg--~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv  166 (243)
T 3mbr_X           94 TLTPRARFRYPGEG---WALTSDD--SHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV  166 (243)
T ss_dssp             TTEEEEEEECSSCC---CEEEECS--SCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             cCcEEEEEeCCCCc---eEEeeCC--CEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence            99999999765432   3444543  3344433 3677888554 445555554322     234556665 77766655


Q ss_pred             cCCCeEEEEEECCCCceEEEEeCCC-----------CCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          235 STRGTLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       235 s~dg~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      ..+.. |.+.|.++|+.+..+....           .....+.|+++|+++.|.+.+.-= =++|.++
T Consensus       167 w~s~~-I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w-p~~~~v~  232 (243)
T 3mbr_X          167 WLTSR-IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW-PMLYEIR  232 (243)
T ss_dssp             TTTTE-EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC-SEEEEEE
T ss_pred             CCCCe-EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC-CcEEEEE
Confidence            56777 9999999999998887320           123568999999887766655432 3455544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.71  E-value=0.00017  Score=66.00  Aligned_cols=258  Identities=14%  Similarity=0.179  Sum_probs=176.4

Q ss_pred             CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcC
Q 015198           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR  143 (411)
Q Consensus        64 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~  143 (411)
                      +..|.|.|+.......++.. .....+  |.+...-..+=.  .      ..+.++|+++.+.++.+.....|.--.|-.
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi-~AdsAI--MnP~~~iiALra--g------~~lQiFnle~K~klks~~~~e~VvfWkWis  115 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI-SADSAI--MNPASKVIALKA--G------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  115 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC-CCSEEE--ECSSSSCEEEEE--T------TEEEEEETTTTEEEEEEECSSCCCEEEEEE
T ss_pred             CCeEEEEECCCCCcceeccc-ccceee--eCCCCcEEEEec--C------CeEEEEchHHhhhhcceecCCCceEEEecC
Confidence            44788899987666665554 222222  223333333333  1      899999999999999999878888888754


Q ss_pred             C-eEEEEEcCeEEEEEcCC-ceeeEEEeccC--CCcceEEEccCCCceEEEEecC------CCCeEEEEEcCCcceEEEe
Q 015198          144 D-RIVVVLEHKIYVYSFVD-LKLLHQIETLA--NLRGLCCLSHHSSTSVLACPGL------QRGQVRIEHFGLNMIKLIN  213 (411)
Q Consensus       144 ~-~~~~~~dg~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~------~dg~i~i~~~~~~~~~~~~  213 (411)
                      + ..-++.+..|+-|++.. ..+.+.+..|.  ....++.+..+++.++++..|-      -.|.+.++....+..+.+.
T Consensus       116 ~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ie  195 (494)
T 1bpo_A          116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  195 (494)
T ss_dssp             TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEEC
T ss_pred             CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhe
Confidence            4 44455999999999964 35666665543  2356788888999888876653      3577888999999999999


Q ss_pred             ccccceeEEEecCCC---CEEEEEcCC---CeEEEEEECCCC--------ceEEEE--eCCCCCcceEEEEeCCCCCEEE
Q 015198          214 AHDSHIACFTLTLDG---LLLATASTR---GTLIRIFNTVDG--------TRLQEV--RRGVDRAEIYSIALSPNVQWLA  277 (411)
Q Consensus       214 ~~~~~i~~l~~sp~g---~~l~s~s~d---g~~I~vwd~~~~--------~~~~~~--~~~~~~~~v~~l~~spdg~~l~  277 (411)
                      +|.+....+.+.-+.   .+++.+...   +. ++|-++...        +....+  .......-..++..++.-..++
T Consensus       196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~k-Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy  274 (494)
T 1bpo_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (494)
T ss_dssp             CSEEEEEEEECTTCSSEEEEEEEEECSTTCCE-EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred             eeeeeeEEEecCCCCCCceEEEEEEecCCCcE-EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence            998887766654222   244444432   56 999998542        111111  1111123455788888888899


Q ss_pred             EEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEe
Q 015198          278 VASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHI  357 (411)
Q Consensus       278 s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (411)
                      ..+.-|.|++||+.++.+.-                                                        .-++
T Consensus       275 viTK~G~i~lyDleTgt~i~--------------------------------------------------------~nrI  298 (494)
T 1bpo_A          275 LITKYGYIHLYDLETGTCIY--------------------------------------------------------MNRI  298 (494)
T ss_dssp             EEETTSEEEEEETTTCCEEE--------------------------------------------------------EEEC
T ss_pred             EEecCceEEEEecccceeee--------------------------------------------------------eecc
Confidence            99999999999999998651                                                        2334


Q ss_pred             CCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          358 PEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       358 ~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                      ..+.+.+.+.... +.++++...|.|+--.+++
T Consensus       299 s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             cCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            4456666666554 8899999999888877776

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.71  E-value=2.1e-05  Score=68.25  Aligned_cols=194  Identities=11%  Similarity=-0.024  Sum_probs=124.1

Q ss_pred             CeEEEEEcCCCCEEEEEe---CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           46 ELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      ....+.|++++.++++.+   ++.|+++|..+++......+.. ......+.+..+..+.++. .+     +.+.++|..
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-~~fgeGi~~~g~~lyv~t~-~~-----~~v~viD~~   94 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-SYFGEGLTLLNEKLYQVVW-LK-----NIGFIYDRR   94 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEET-TC-----SEEEEEETT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-CcceEEEEEeCCEEEEEEe-cC-----CEEEEEECC
Confidence            357999999875554443   5789999999977666655522 2233345555555555543 44     999999999


Q ss_pred             CCcEEEEEeec-CceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCC--Cc-ceEEEccCCCceEEEEecCCCC
Q 015198          123 QSRCIGEFAFR-SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLAN--LR-GLCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       123 ~~~~~~~~~~~-~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~g~~dg  197 (411)
                      +.+.+.++... ..-..++......++. .++.|.++|..+.+.+..+.....  ++ ....+.+. ++.+.+. ...++
T Consensus        95 t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn-~~~~~  172 (266)
T 2iwa_A           95 TLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWAN-IWQTD  172 (266)
T ss_dssp             TTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ETTSS
T ss_pred             CCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEe-cCCCC
Confidence            99999998754 3334444433333333 568999999999998888865432  11 12233333 4444443 33456


Q ss_pred             eEEE-EEcCCcceEEEeccc-------------cceeEEEecCCCCEE-EEEcCCCeEEEEEECCCC
Q 015198          198 QVRI-EHFGLNMIKLINAHD-------------SHIACFTLTLDGLLL-ATASTRGTLIRIFNTVDG  249 (411)
Q Consensus       198 ~i~i-~~~~~~~~~~~~~~~-------------~~i~~l~~sp~g~~l-~s~s~dg~~I~vwd~~~~  249 (411)
                      .|.+ +..+++.+..+....             ...+.|+|+|+++.| +++...+. |.+.++...
T Consensus       173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~-v~~i~l~~~  238 (266)
T 2iwa_A          173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK-LFEIKLHLV  238 (266)
T ss_dssp             EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE-EEEEEEEEC
T ss_pred             eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe-EEEEEEecc
Confidence            7776 656677777775321             245899999998755 55556677 888887543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.69  E-value=3e-06  Score=79.01  Aligned_cols=99  Identities=13%  Similarity=0.055  Sum_probs=68.3

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E-----------cCeEEEEEcCCceeeEEEecc-CCC----c
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L-----------EHKIYVYSFVDLKLLHQIETL-ANL----R  175 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-----------dg~i~iwd~~~~~~~~~~~~~-~~~----~  175 (411)
                      +.|.++|..+++.+..+.....- .+.++||++.+.  .           ++.|.++|..+++.+..+... ...    .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~  177 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT  177 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence            69999999999999999854444 899999998666  2           467999999999999888653 100    0


Q ss_pred             ceEEEccCCCceEEEEecCC-CCeEEEEEc-CCcceEEEe
Q 015198          176 GLCCLSHHSSTSVLACPGLQ-RGQVRIEHF-GLNMIKLIN  213 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~-dg~i~i~~~-~~~~~~~~~  213 (411)
                      ....+.+++++++++++... ++.|.+.+. ..+.+..+.
T Consensus       178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence            11234455666677665433 577888554 445555554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.62  E-value=1.5e-05  Score=77.78  Aligned_cols=193  Identities=9%  Similarity=0.022  Sum_probs=109.0

Q ss_pred             CCCEEEEEe-CCcEEEEec-CCCcceEEeecCCCCE---------EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           55 DYGCFAAGT-SCGFRIYNC-EPFKETFRRDLKSGGF---------RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        55 ~g~~la~g~-dg~i~iw~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      ++..++... ++.|.-+|. ++++.+.+..+.....         ....+... ++.+++.. .+     +.|..+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~-~d-----g~l~alD~~t  134 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-AGQIVKKQ-AN-----GHLLALDAKT  134 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEEC-TT-----SEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE-CCEEEEEe-CC-----CEEEEEECCC
Confidence            344444444 688999999 8888877765422110         00011122 34444443 33     9999999999


Q ss_pred             CcEEEEEeecC-----cee-EEEEcCCeEEEE--E------cCeEEEEEcCCceeeEEEeccCCCcc-------------
Q 015198          124 SRCIGEFAFRS-----DVR-SVKLSRDRIVVV--L------EHKIYVYSFVDLKLLHQIETLANLRG-------------  176 (411)
Q Consensus       124 ~~~~~~~~~~~-----~i~-~~~~~~~~~~~~--~------dg~i~iwd~~~~~~~~~~~~~~~~~~-------------  176 (411)
                      |+.+..+....     .+. ...+. ++.+++  .      ++.|+.+|.++|+.+..+........             
T Consensus       135 G~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~  213 (571)
T 2ad6_A          135 GKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPH  213 (571)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccc
Confidence            99998877322     222 11222 445554  2      68999999999999988765322100             


Q ss_pred             -----------------------eEEEccCCCceEEEE-ecC----------CC----CeEEE-EEcCCcceEEEecc--
Q 015198          177 -----------------------LCCLSHHSSTSVLAC-PGL----------QR----GQVRI-EHFGLNMIKLINAH--  215 (411)
Q Consensus       177 -----------------------~~~~~~~~~~~~l~~-~g~----------~d----g~i~i-~~~~~~~~~~~~~~--  215 (411)
                                             ...++.+++...+++ ++.          .+    +.|.. +..+++.+-.++..  
T Consensus       214 ~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~  293 (571)
T 2ad6_A          214 YGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH  293 (571)
T ss_dssp             GCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCC
Confidence                                   001222332223333 221          01    23554 44456665555422  


Q ss_pred             c--------cceeEEEecCCCC---EEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          216 D--------SHIACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       216 ~--------~~i~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      .        .++ -+....+|+   .++.++.+|. ++++|..+|+.+..+..
T Consensus       294 d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          294 DEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             CSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             cccccccCCCCE-EEecccCCcEEEEEEEeCCCcE-EEEEECCCCCEEeeecc
Confidence            1        122 122224674   6778889999 99999999999887764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.61  E-value=0.00013  Score=74.29  Aligned_cols=236  Identities=10%  Similarity=0.084  Sum_probs=150.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecC------CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLK------SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...|.++...++|.+.+...++.+.+|+..+... ......      -....+.++....++.+.++..       +-|.
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-------~Gl~  285 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEI-KNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-------NDLN  285 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEE-EEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-------SCEE
T ss_pred             CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeE-EEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-------Chhh
Confidence            4578888888877655544366788898765332 111110      1134577777777776666542       4588


Q ss_pred             EEECCCCcEEEEEe--------ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccC-----CCcceEEEcc
Q 015198          118 IWDDHQSRCIGEFA--------FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLA-----NLRGLCCLSH  182 (411)
Q Consensus       118 vwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~  182 (411)
                      +||..+++......        ....|.++...++|.+.+  .++.|..|+..+.+.. .+....     ....+.++..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~  364 (795)
T 4a2l_A          286 IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVE  364 (795)
T ss_dssp             EEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEE
T ss_pred             eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEE
Confidence            89977765433221        135799999999888777  4688999987654332 222110     1124667777


Q ss_pred             CCCceEEEEecCCCCeEEEEEcCCcceEEEec---------cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEE
Q 015198          183 HSSTSVLACPGLQRGQVRIEHFGLNMIKLINA---------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (411)
Q Consensus       183 ~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~---------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (411)
                      +.++.+.+  |..++-|..++........+..         ....|.++...++|++|..|+.++. |.+||..+++.. 
T Consensus       365 d~~g~lWi--Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~~~~~-  440 (795)
T 4a2l_A          365 DKDKNLWI--GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNSGQVE-  440 (795)
T ss_dssp             CTTSCEEE--EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTE-EEEEETTTCCEE-
T ss_pred             CCCCCEEE--EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCCCcEE-
Confidence            77776664  3356567776665544444321         2356889999889986677777788 999998877643 


Q ss_pred             EEeC---CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          254 EVRR---GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       254 ~~~~---~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .+..   ......|.++...++|++.+. +.+| |.+||.++++
T Consensus       441 ~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~~~~  482 (795)
T 4a2l_A          441 NFNQRNSQLVNENVYAILPDGEGNLWLG-TLSA-LVRFNPEQRS  482 (795)
T ss_dssp             EECTTTSCCSCSCEEEEEECSSSCEEEE-ESSC-EEEEETTTTE
T ss_pred             EeecCCCCcCCCeeEEEEECCCCCEEEE-ecCc-eeEEeCCCCe
Confidence            3331   012357999999888886554 4455 9999987654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.61  E-value=8.1e-05  Score=66.49  Aligned_cols=227  Identities=8%  Similarity=0.034  Sum_probs=132.8

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      .....++|+++|+++++.. ++.|..|+.+. +.......   ......+.+.+++.++++....   ....|..+|..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---~~~p~gia~~~dG~l~vad~~~---~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV---EGKVSGLAFTSNGDLVATGWNA---DSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC---SSEEEEEEECTTSCEEEEEECT---TSCEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC---CCCceeEEEcCCCcEEEEeccC---CcceEEEEcCCC
Confidence            5678999999999777765 88888888765 22222222   2356677788877666554221   003577778778


Q ss_pred             CcEEEEEee--cCceeEEEEcCCeEEEE---EcCeEEEEEcCCcee-eEEEec-------cCCCcceEEEccCCCceEEE
Q 015198          124 SRCIGEFAF--RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL-LHQIET-------LANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       124 ~~~~~~~~~--~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~l~  190 (411)
                      ++.......  ......++..+++..++   .++.|+.+|...++. +.....       .........+++  ++..|+
T Consensus       105 g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~--dg~~ly  182 (306)
T 2p4o_A          105 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLY  182 (306)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEE
T ss_pred             CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCc--CCCEEE
Confidence            776443332  22234555556665554   368899999765432 111111       011112233433  444555


Q ss_pred             EecCCCCeEEEEEcCC--cc--eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE
Q 015198          191 CPGLQRGQVRIEHFGL--NM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~--~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (411)
                      ++-...+.|..++...  ..  ...+.. ......++++++|+++++....+. |.++|. .++..............++
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~-V~~~~~-~G~~~~~~~~~~~~~~p~~  259 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNS-VVRIAP-DRSTTIIAQAEQGVIGSTA  259 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCC-EEEECT-TCCEEEEECGGGTCTTEEE
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCe-EEEECC-CCCEEEEeecccccCCceE
Confidence            5555677888866553  11  122211 134567899999988777666778 999996 4665332111112246899


Q ss_pred             EEeC---CCCCEEEEEeCCC
Q 015198          267 IALS---PNVQWLAVASDKG  283 (411)
Q Consensus       267 l~~s---pdg~~l~s~s~dg  283 (411)
                      ++|.   ||++.|++++..+
T Consensus       260 ~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          260 VAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEECCSTTTTTEEEEEECTT
T ss_pred             EEEecccCCCCEEEEECCCC
Confidence            9998   8888777766544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.60  E-value=2.8e-05  Score=66.74  Aligned_cols=184  Identities=9%  Similarity=0.014  Sum_probs=116.8

Q ss_pred             CCCCC--eEEEEEcCCCCEEEEEe-CC--cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           42 VDEIE--LISVSWNQDYGCFAAGT-SC--GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        42 ~h~~~--V~~l~~s~~g~~la~g~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      .|...  ...|.|+ ++.++.+.+ +|  .|+++|+++++......+ ........+....+..+.++...      +.+
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~~------~~v  109 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-GKRYFGEGISDWKDKIVGLTWKN------GLG  109 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESSS------SEE
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-CCccceeEEEEeCCEEEEEEeeC------CEE
Confidence            44443  4788998 665555554 55  899999999877666665 33333334455566666665433      999


Q ss_pred             EEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCC--Ccc-eEEEccCCCceEEE
Q 015198          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN--LRG-LCCLSHHSSTSVLA  190 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~l~  190 (411)
                      .++|..+.+.+.++.....=..++.  ++..++   .++.|.++|..+.+.+..+....+  ++. ...+.+. ++.+.+
T Consensus       110 ~v~D~~t~~~~~ti~~~~eG~glt~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya  186 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDGEGWGLTH--NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA  186 (262)
T ss_dssp             EEEETTTCCEEEEEECSSCCCCEEE--CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEEECccCcEEEEEECCCCceEEec--CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence            9999999999999996554345554  343333   356799999999999888865322  211 1123333 455554


Q ss_pred             EecCCCCeEEE-EEcCCcceEEEecc------------ccceeEEEecCCCCEEEEEcCC
Q 015198          191 CPGLQRGQVRI-EHFGLNMIKLINAH------------DSHIACFTLTLDGLLLATASTR  237 (411)
Q Consensus       191 ~~g~~dg~i~i-~~~~~~~~~~~~~~------------~~~i~~l~~sp~g~~l~s~s~d  237 (411)
                      .. ..++.|.+ +..+++.+..+...            ....+.|+|+|+++.|+..+..
T Consensus       187 n~-w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          187 NV-WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EE-TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EE-ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            43 34556655 55566666666532            1345889999998877766654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.57  E-value=7.6e-05  Score=72.93  Aligned_cols=236  Identities=11%  Similarity=0.059  Sum_probs=134.4

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCC-------EEEEEEeccCCe--EEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGG-------FRIVEMLFRCNI--LALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      +..+++++ ++.+.-+|.++++.+....+....       ..++. .-..++  .+++.......-.++.|..+|..+|+
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~  195 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE  195 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence            44666777 899999999988887776652211       11111 000011  44443321000012899999999999


Q ss_pred             EEEEEeecC-ce-----------------------------------------eEEEEcCC-eEEEE-E-----------
Q 015198          126 CIGEFAFRS-DV-----------------------------------------RSVKLSRD-RIVVV-L-----------  150 (411)
Q Consensus       126 ~~~~~~~~~-~i-----------------------------------------~~~~~~~~-~~~~~-~-----------  150 (411)
                      .+....... .+                                         ..++++++ +.+.+ .           
T Consensus       196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            988765321 00                                         12345544 33333 2           


Q ss_pred             ----------c----CeEEEEEcCCceeeEEEeccCCC-------cceEEEccC-CCce--EEEEecCCCCeEEEEEc-C
Q 015198          151 ----------E----HKIYVYSFVDLKLLHQIETLANL-------RGLCCLSHH-SSTS--VLACPGLQRGQVRIEHF-G  205 (411)
Q Consensus       151 ----------d----g~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~--~l~~~g~~dg~i~i~~~-~  205 (411)
                                |    +.|..+|.++|+.+..++...+.       ...+.+... .+++  .+++.++.+|.+++.+. +
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                      2    58999999999999888653221       111222211 2332  23345678999998654 4


Q ss_pred             CcceEEEeccc-------------cc--------------------------------eeEEEecCCCCEEEEEc-----
Q 015198          206 LNMIKLINAHD-------------SH--------------------------------IACFTLTLDGLLLATAS-----  235 (411)
Q Consensus       206 ~~~~~~~~~~~-------------~~--------------------------------i~~l~~sp~g~~l~s~s-----  235 (411)
                      ++.+..+....             .+                                -..++++|+..++++..     
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            55444433221             00                                01345666655544432     


Q ss_pred             ----------------------------CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEE
Q 015198          236 ----------------------------TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI  287 (411)
Q Consensus       236 ----------------------------~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~v  287 (411)
                                                  .+|. |..||+.+|+.+.+.....   ++..-.....+.+++.++.||.++.
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~-l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~g~~dg~l~A  511 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGS-LRAMDPVSGKVVWEHKEHL---PLWAGVLATAGNLVFTGTGDGYFKA  511 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEE-EEEECTTTCCEEEEEEESS---CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcce-EEEEECCCCCEEEEecCCC---CCcccceEeCCCEEEEECCCCcEEE
Confidence                                        2577 9999999999987776421   2221111224667888999999999


Q ss_pred             EEccccccC
Q 015198          288 FSLRVRVVG  296 (411)
Q Consensus       288 wd~~~~~~~  296 (411)
                      ||.++|+..
T Consensus       512 ~D~~tG~~l  520 (582)
T 1flg_A          512 FDAKSGKEL  520 (582)
T ss_dssp             EETTTCCEE
T ss_pred             EECCCCCEE
Confidence            999999864

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.54  E-value=7e-05  Score=74.60  Aligned_cols=191  Identities=14%  Similarity=0.128  Sum_probs=111.2

Q ss_pred             CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEE---------EEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFR---------IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        56 g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      +..|++++ ++.|.-+|..+++.+.+.........         ...+... ++.+++. ..+     +.|..+|..+|+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~-~~d-----g~l~alD~~tG~  138 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVG-TLD-----GRLIALDAKTGK  138 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEE-CTT-----SEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE-CCEEEEE-cCC-----CEEEEEECCCCC
Confidence            44566666 88999999998888777654221100         0001112 2334444 334     999999999999


Q ss_pred             EEEEEeec-----CceeE-EEEcCCeEEEE--E------cCeEEEEEcCCceeeEEEeccC-CCcc--------------
Q 015198          126 CIGEFAFR-----SDVRS-VKLSRDRIVVV--L------EHKIYVYSFVDLKLLHQIETLA-NLRG--------------  176 (411)
Q Consensus       126 ~~~~~~~~-----~~i~~-~~~~~~~~~~~--~------dg~i~iwd~~~~~~~~~~~~~~-~~~~--------------  176 (411)
                      .+..+...     ..+.+ ..+. ++.+++  .      ++.|+.+|.++|+.+..+.... .+..              
T Consensus       139 ~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  217 (668)
T 1kv9_A          139 AIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW  217 (668)
T ss_dssp             EEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred             EeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence            99888732     11111 1122 455555  2      5899999999999998886421 1100              


Q ss_pred             --------------eEEEccCCCceEEEEecCCCC-------------------eEEEEE-cCCcceEEEec--cc----
Q 015198          177 --------------LCCLSHHSSTSVLACPGLQRG-------------------QVRIEH-FGLNMIKLINA--HD----  216 (411)
Q Consensus       177 --------------~~~~~~~~~~~~l~~~g~~dg-------------------~i~i~~-~~~~~~~~~~~--~~----  216 (411)
                                    ...++.+++...+++ +..++                   .|..++ .+++.+-.++.  |.    
T Consensus       218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~-~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~  296 (668)
T 1kv9_A          218 QGDQYWKLGGGGTVWDSMAYDPELDLLYV-GTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF  296 (668)
T ss_dssp             CSSCHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             CccceeeeCCCCccccceEEcCCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc
Confidence                          001233333334443 33443                   255544 45566655543  22    


Q ss_pred             ---cceeEEEecCCCC---EEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198          217 ---SHIACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       217 ---~~i~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (411)
                         .+.....+..+|+   .|+.++.+|. ++++|..+|+.+..+.
T Consensus       297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          297 TATQQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAEK  341 (668)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred             cCCCCcEEEEeccCCcEEEEEEEECCCCE-EEEEECCCCCEecccc
Confidence               2222223334665   6888999999 9999999999886554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.52  E-value=3e-05  Score=74.37  Aligned_cols=184  Identities=10%  Similarity=0.015  Sum_probs=120.8

Q ss_pred             CCeEEEE-ecCCCCCCCCCeEEEEECCCCcEEEEEe--ecCceeEEEE-c-CCeEEEE-E--------------------
Q 015198           97 CNILALV-GAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKL-S-RDRIVVV-L--------------------  150 (411)
Q Consensus        97 ~~~~~l~-s~~~d~~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~-~-~~~~~~~-~--------------------  150 (411)
                      +++.++. ....+     ..|.+.|+.+.++...+.  .......+++ . |++.++. .                    
T Consensus        99 ~DG~~lfVnd~~~-----~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A           99 YDGRFLFMNDKAN-----TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EEEEEEEEEETTT-----TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             cCCCEEEEEcCCC-----CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence            3555444 44444     889999999999988665  4566888887 4 7777766 2                    


Q ss_pred             cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC--------------Ce------------------
Q 015198          151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR--------------GQ------------------  198 (411)
Q Consensus       151 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d--------------g~------------------  198 (411)
                      ++.+.+.|..+.+...++....++ ..+.+++  ++.+++++....              ..                  
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg~p-d~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSGNL-DNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCC-CCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             CceEEEEECCCCeEEEEEEeCCCc-cceEECC--CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence            357999999999999888764443 3355555  455665554332              11                  


Q ss_pred             -----EEEEEcCC---cc-eEEEeccccceeEEEecCCCCEEEEEcC-CCeEEEEEECCCCc------------eEEEEe
Q 015198          199 -----VRIEHFGL---NM-IKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGT------------RLQEVR  256 (411)
Q Consensus       199 -----i~i~~~~~---~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~------------~~~~~~  256 (411)
                           |.+-+...   +. +..+.. .....++.++|||+++++++. +.. |.++|+.+.+            ...++.
T Consensus       251 ~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          251 QELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             EEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             eEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCe-EEEEECcccccccccccCcccceEEEcC
Confidence                 33322221   12 223322 223467899999998777664 556 9999998653            334444


Q ss_pred             CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      .   ......++|+|+|...++.-.|++|.+||+++.
T Consensus       329 v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a  362 (595)
T 1fwx_A          329 L---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  362 (595)
T ss_dssp             C---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             C---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHh
Confidence            2   236789999999944456667999999999883

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.49  E-value=4.2e-05  Score=65.66  Aligned_cols=179  Identities=8%  Similarity=0.018  Sum_probs=114.3

Q ss_pred             eEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        47 V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      ...|.|+. +.++.+.+ +|.|+++|+++++..... + ........+....+..+.++...      +.+.+||..+.+
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~------~~v~V~D~~Tl~  127 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTE------GLLFTWSGMPPQ  127 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSS------CEEEEEETTTTE
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccC------CEEEEEECCcCc
Confidence            46788873 33444444 888999999997776665 5 33333334556666666665433      999999999999


Q ss_pred             EEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcc---eEEEccCCCceEEEEecCCCCeEEE
Q 015198          126 CIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRG---LCCLSHHSSTSVLACPGLQRGQVRI  201 (411)
Q Consensus       126 ~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~g~~dg~i~i  201 (411)
                      .+.++.....-..++......++. .++.|+++|..+.+.+..+.....+..   ...+.+. ++.+.+.. ..+..|.+
T Consensus       128 ~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv-w~s~~I~v  205 (268)
T 3nok_A          128 RERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI-WHSSDVLE  205 (268)
T ss_dssp             EEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE-TTCSEEEE
T ss_pred             EEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE-CCCCeEEE
Confidence            999999655555666554433333 578899999999999888865432211   1223333 44544443 34455555


Q ss_pred             -EEcCCcceEEEecc-------------ccceeEEEecCCCCEEEEEcC
Q 015198          202 -EHFGLNMIKLINAH-------------DSHIACFTLTLDGLLLATAST  236 (411)
Q Consensus       202 -~~~~~~~~~~~~~~-------------~~~i~~l~~sp~g~~l~s~s~  236 (411)
                       +..+++.+..+...             ..-.+.|+++|+++.|+..+.
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence             55566666666432             135688999998765555443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.49  E-value=0.00016  Score=61.41  Aligned_cols=183  Identities=10%  Similarity=0.041  Sum_probs=115.2

Q ss_pred             CCeEEEEEcCCCCEEEEEe-C--CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           45 IELISVSWNQDYGCFAAGT-S--CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      .-...|.|+. +.++.+.+ +  ..|+.+|+++++......+.. ...-..+....+..+.++...      +.+.++|.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~------~~v~v~D~   92 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRN------HEGFVYDL   92 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSS------SEEEEEET
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeC------CEEEEEEC
Confidence            3456899987 44444444 3  489999999977766666533 322333445556666665433      99999999


Q ss_pred             CCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCc---ceEEEccCCCceEEEEecCCCC
Q 015198          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLR---GLCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       122 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~~dg  197 (411)
                      .+.+.+.++.....-..++......++. .++.|.++|..+.+.+..+....+..   ....+.+. ++.+.+..-. +.
T Consensus        93 ~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~-s~  170 (243)
T 3mbr_X           93 ATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL-TS  170 (243)
T ss_dssp             TTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-TT
T ss_pred             CcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC-CC
Confidence            9999999999655556666544333333 56789999999999988886543211   11233333 4455544333 34


Q ss_pred             eEEE-EEcCCcceEEEecc-------------ccceeEEEecCCCCEEEEEcCC
Q 015198          198 QVRI-EHFGLNMIKLINAH-------------DSHIACFTLTLDGLLLATASTR  237 (411)
Q Consensus       198 ~i~i-~~~~~~~~~~~~~~-------------~~~i~~l~~sp~g~~l~s~s~d  237 (411)
                      .|.+ +..+++.+..+...             ..-.+.|+++|+++.|+..+..
T Consensus       171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            5544 65666666666422             1356889999988766665543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.45  E-value=0.00037  Score=63.44  Aligned_cols=236  Identities=7%  Similarity=-0.061  Sum_probs=136.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCC
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQS  124 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~  124 (411)
                      ...|.+..+ ..+|+.+....|+..+++.......  + ........+.|++ ++.++++....     +.|..+++..+
T Consensus        35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~--~-~~~~~~~~l~~d~~~~~ly~~D~~~-----~~I~r~~~~g~  105 (349)
T 3v64_C           35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLL--L-NNLENAIALDFHHRRELVFWSDVTL-----DRILRANLNGS  105 (349)
T ss_dssp             SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEE--E-CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSC
T ss_pred             CCccccccc-CceeEeecccceEEEeCCCCeeEEe--e-cCCCceEEEEEeccccEEEEEeccC-----CceEEEecCCC
Confidence            345666666 4466666666677777765332222  2 2233466777774 45555554444     89999998766


Q ss_pred             cEEEEEe-ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC-Ce
Q 015198          125 RCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR-GQ  198 (411)
Q Consensus       125 ~~~~~~~-~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d-g~  198 (411)
                      .....+. .......+++.+ .+.+.+   ..+.|.+.++........+.....  ....++.++.+..|..+-... +.
T Consensus       106 ~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~--~P~~iavdp~~g~ly~td~~~~~~  183 (349)
T 3v64_C          106 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE--KPRAIALHPMEGTIYWTDWGNTPR  183 (349)
T ss_dssp             SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCS--CEEEEEEETTTTEEEEEECSSSCE
T ss_pred             CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCC--CcceEEEecCcCeEEEeccCCCCE
Confidence            5444333 234567888886 344433   457899999864432222222222  234455554434444444344 67


Q ss_pred             EEEEEcCCcceEEEe-ccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEE
Q 015198          199 VRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL  276 (411)
Q Consensus       199 i~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l  276 (411)
                      |...+.++.....+. ..-.....|+++|++..|..+. ..+. |..+|+........+..  .......|++ .++.++
T Consensus       184 I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~-I~~~~~dG~~~~~~~~~--~~~~P~giav-~~~~ly  259 (349)
T 3v64_C          184 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQ--GLPHPFAITV-FEDSLY  259 (349)
T ss_dssp             EEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECS--SCSSEEEEEE-ETTEEE
T ss_pred             EEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE-EEEEeCCCCceEEEEeC--CCCCceEEEE-ECCEEE
Confidence            777777765544432 2234567899998776666554 4556 99999864433322332  2335677888 345555


Q ss_pred             EEEeCCCcEEEEEccccccC
Q 015198          277 AVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       277 ~s~s~dg~I~vwd~~~~~~~  296 (411)
                      ++-...+.|..++-.+|+..
T Consensus       260 ~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          260 WTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             EEETTTTEEEEEETTTCCSC
T ss_pred             EecCCCCeEEEEEccCCCcc
Confidence            55556777888876666544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.45  E-value=0.00024  Score=65.72  Aligned_cols=234  Identities=7%  Similarity=-0.072  Sum_probs=135.0

Q ss_pred             EEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcE
Q 015198           48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~  126 (411)
                      .|.+..+ ..+|+.+....|+.++++........   ........+.|++ ++.++++....     +.|..+++..+..
T Consensus        80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~---~~~~~~~gl~~d~~~~~ly~~D~~~-----~~I~r~~~~g~~~  150 (386)
T 3v65_B           80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLL---NNLENAIALDFHHRRELVFWSDVTL-----DRILRANLNGSNV  150 (386)
T ss_dssp             CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEE---CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCCE
T ss_pred             eECCccc-cceeEeecCccceeeccCCCcEEEEe---cCCCccEEEEEecCCCeEEEEeCCC-----CcEEEEecCCCCc
Confidence            3445444 44566666667888887754332222   2333466777774 45555554444     8999999876654


Q ss_pred             EEEEe-ecCceeEEEEcCC-eEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC-CeEE
Q 015198          127 IGEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR-GQVR  200 (411)
Q Consensus       127 ~~~~~-~~~~i~~~~~~~~-~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d-g~i~  200 (411)
                      ...+. .......+++.+. +.+.+   ..+.|.+.++........+.....  ....++.++.+..|+.+-... +.|.
T Consensus       151 ~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~--~P~giavdp~~g~ly~td~~~~~~I~  228 (386)
T 3v65_B          151 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE--KPRAIALHPMEGTIYWTDWGNTPRIE  228 (386)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCS--CEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCC--CCcEEEEEcCCCeEEEeccCCCCEEE
Confidence            44333 2334567888763 33333   456888888764332222222212  334444554444454444334 6777


Q ss_pred             EEEcCCcceEEEe-ccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEE
Q 015198          201 IEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV  278 (411)
Q Consensus       201 i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s  278 (411)
                      ..+.++.....+. ..-.....|+++|++..|+.+. ..+. |..+|+........+..  .......|++ ..+.++++
T Consensus       229 r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~--~~~~P~giav-~~~~ly~t  304 (386)
T 3v65_B          229 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQ--GLPHPFAITV-FEDSLYWT  304 (386)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE-EEEECTTSCSCEEEECS--SCSSEEEEEE-ETTEEEEE
T ss_pred             EEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE-EEEEeCCCCeeEEEEEC--CCCCceEEEE-ECCEEEEe
Confidence            7777776555543 2334568899998776665554 4566 99999864433323332  2335678888 34555566


Q ss_pred             EeCCCcEEEEEccccccC
Q 015198          279 ASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       279 ~s~dg~I~vwd~~~~~~~  296 (411)
                      -...+.|..++..+++..
T Consensus       305 d~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          305 DWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             ETTTTEEEEEETTTCCSC
T ss_pred             eCCCCeEEEEECCCCcce
Confidence            666778888886666544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.43  E-value=7.9e-05  Score=67.06  Aligned_cols=180  Identities=10%  Similarity=0.045  Sum_probs=104.0

Q ss_pred             EEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee---------------------cCceeEEEEcC-CeEEE
Q 015198           91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF---------------------RSDVRSVKLSR-DRIVV  148 (411)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~---------------------~~~i~~~~~~~-~~~~~  148 (411)
                      ..+.+++++.++..+..+     +.|..||..+++.. .+..                     ......+++.+ ++.++
T Consensus        22 ~~i~~d~~g~~l~v~~~~-----~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~   95 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQD-----GRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY   95 (322)
T ss_dssp             CCEECCTTCSSEEEECTT-----SEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred             eEEEEcCCCCEEEEEcCC-----CeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence            345567776634444444     89999997765543 2321                     13578899997 77666


Q ss_pred             E--EcCeEEEEEcCCceeeEEEeccC---CCcceEEEccCC-CceEEEEecC----------------CCCeEEEEEcCC
Q 015198          149 V--LEHKIYVYSFVDLKLLHQIETLA---NLRGLCCLSHHS-STSVLACPGL----------------QRGQVRIEHFGL  206 (411)
Q Consensus       149 ~--~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~l~~~g~----------------~dg~i~i~~~~~  206 (411)
                      +  ..+.|..+|..+++. ..+....   .......+..++ ++.+.++...                .++.|..++...
T Consensus        96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            5  345688888765543 2222111   011234456666 6665554322                135666666554


Q ss_pred             cceEEEeccccceeEEEecCCCCEEEEE-cCCCeEEEEEECCCCc--eEEEEeCCCCCcceEEEEeCCCCCEEEEEeC
Q 015198          207 NMIKLINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASD  281 (411)
Q Consensus       207 ~~~~~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  281 (411)
                      ..+..+...-.....|+++|+|++|+.+ ...+. |.+|++....  ....+..  ..+ ...+++.++|+++++...
T Consensus       175 ~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~-I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          175 KETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQ-IVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTE-EEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEE
T ss_pred             CEEEEeccCCccCcceEECCCCCEEEEEeCCCCe-EEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecC
Confidence            4443333223445679999999866555 55677 9999987521  1222222  223 788999999986666544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.42  E-value=8e-05  Score=72.82  Aligned_cols=193  Identities=8%  Similarity=-0.016  Sum_probs=108.3

Q ss_pred             CCCEEEEEe-CCcEEEEec-CCCcceEEeecCCCCE---------EEEEEecc-CCeE----EEEecCCCCCCCCCeEEE
Q 015198           55 DYGCFAAGT-SCGFRIYNC-EPFKETFRRDLKSGGF---------RIVEMLFR-CNIL----ALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        55 ~g~~la~g~-dg~i~iw~~-~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~----~l~s~~~d~~~~d~~i~v  118 (411)
                      ++.+++.+. ++.|.-+|. ++++.+.+........         ....+... .++.    +++. ..+     +.|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~-t~d-----g~l~A  135 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKT-QLD-----GNVAA  135 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE-CTT-----SEEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEE-cCC-----CEEEE
Confidence            343444444 688888999 8888877765522110         00112221 1222    3333 334     99999


Q ss_pred             EECCCCcEEEEEeecC-----ceeE-EEEcCCeEEEE-E-------cCeEEEEEcCCceeeEEEeccCCCcc--------
Q 015198          119 WDDHQSRCIGEFAFRS-----DVRS-VKLSRDRIVVV-L-------EHKIYVYSFVDLKLLHQIETLANLRG--------  176 (411)
Q Consensus       119 wd~~~~~~~~~~~~~~-----~i~~-~~~~~~~~~~~-~-------dg~i~iwd~~~~~~~~~~~~~~~~~~--------  176 (411)
                      +|..+|+.+.......     .+.+ ..+. ++.+++ .       ++.|+.+|.++|+.+..+........        
T Consensus       136 lDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~  214 (599)
T 1w6s_A          136 LNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN  214 (599)
T ss_dssp             EETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred             EECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence            9999999998876322     2221 1222 455555 2       68999999999999988865422100        


Q ss_pred             ----------------------------eEEEccCCCceEEEEecCC---------------CCeEEE-EEcCCcceEEE
Q 015198          177 ----------------------------LCCLSHHSSTSVLACPGLQ---------------RGQVRI-EHFGLNMIKLI  212 (411)
Q Consensus       177 ----------------------------~~~~~~~~~~~~l~~~g~~---------------dg~i~i-~~~~~~~~~~~  212 (411)
                                                  -..++.+++..++++..+.               .+.|.. +..+++.+-.+
T Consensus       215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~  294 (599)
T 1w6s_A          215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY  294 (599)
T ss_dssp             TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred             cccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence                                        0011222233333332211               124444 44455555555


Q ss_pred             ecccc----------ceeEEEec-CCC---CEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198          213 NAHDS----------HIACFTLT-LDG---LLLATASTRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       213 ~~~~~----------~i~~l~~s-p~g---~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (411)
                      +....          ++. +... .+|   ..++.++.+|. ++++|..+|+.+....
T Consensus       295 q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          295 QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANK  350 (599)
T ss_dssp             ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred             ecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcE-EEEEECCCCCEeeccc
Confidence            43211          121 2222 567   46778899999 9999999999987765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.42  E-value=0.00083  Score=60.18  Aligned_cols=227  Identities=6%  Similarity=-0.114  Sum_probs=130.6

Q ss_pred             EEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCC---CcEEE-EEe-
Q 015198           58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQ---SRCIG-EFA-  131 (411)
Q Consensus        58 ~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~---~~~~~-~~~-  131 (411)
                      +|+.+....|+..++++.......   ........+.|++ ++.++++....     +.|..+++..   +.... .+. 
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~---~~~~~p~g~~~d~~~~~ly~~D~~~-----~~I~~~~~~g~~~~~~~~~~~~~   74 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR   74 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEECS
T ss_pred             EEEEECCCeEEEEECCCcceEehh---cCCCceEEEEEEeCCCEEEEEECCC-----CcEEEEECCCCCCCcccEEEEeC
Confidence            566677777899998874432222   2233456777775 34555555444     8999999775   12222 222 


Q ss_pred             ecCceeEEEEcC-CeEE-EE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC-CeEEEEEcCC
Q 015198          132 FRSDVRSVKLSR-DRIV-VV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR-GQVRIEHFGL  206 (411)
Q Consensus       132 ~~~~i~~~~~~~-~~~~-~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d-g~i~i~~~~~  206 (411)
                      .-.....+++++ .+.+ ++  ..+.|.++++........+.....  ....++.++.+..|+.+.... +.|...+.++
T Consensus        75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~--~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCC--CcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence            224567888875 3443 33  467899999865433322332222  334455554334444443333 6777776777


Q ss_pred             cceEEEe-ccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEEEEeC-CCCCcceEEEEeCCCCCEEEEEeCCC
Q 015198          207 NMIKLIN-AHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKG  283 (411)
Q Consensus       207 ~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg  283 (411)
                      .....+. ..-.....|++++++..|+.+. ..+. |..+|+.. .....+.. .........|++. .+.++++-...+
T Consensus       153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe-EEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence            6655543 2334567899998877666555 4556 99999864 33333322 1122346778875 355555666677


Q ss_pred             cEEEEEccccccCC
Q 015198          284 TVHIFSLRVRVVGE  297 (411)
Q Consensus       284 ~I~vwd~~~~~~~~  297 (411)
                      .|..++..+++..+
T Consensus       230 ~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          230 AIFSANRLTGSDVN  243 (316)
T ss_dssp             EEEEEETTTCCCCE
T ss_pred             eEEEEeCCCCcceE
Confidence            89999887776543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=0.00074  Score=68.61  Aligned_cols=235  Identities=11%  Similarity=0.052  Sum_probs=140.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeec-----CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEE
Q 015198           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL-----KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vw  119 (411)
                      ..|.++...++|.+.+ |+.+.+.+|+..+.........     ......+.++....++.+.++...      +-|.++
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~------~Gl~~~  283 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL------NGIMIL  283 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETTEEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS------SCEEEE
T ss_pred             CceeEEEEcCCCCEEE-EeCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC------CCeEEE
Confidence            5688998888887554 4534788998765322111000     012345777777777777666543      567888


Q ss_pred             ECCCCcEEEEEe---------------ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEec--------cCCC
Q 015198          120 DDHQSRCIGEFA---------------FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIET--------LANL  174 (411)
Q Consensus       120 d~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~--------~~~~  174 (411)
                      |..+++......               ....|.++...+++.+.+  .++.|..++..+.... .+..        ....
T Consensus       284 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~  362 (781)
T 3v9f_A          284 DLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSN  362 (781)
T ss_dssp             ETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSS
T ss_pred             CCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCC
Confidence            877665332111               235689999998887666  4788999997654332 2211        0111


Q ss_pred             cceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEE----eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc
Q 015198          175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI----NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT  250 (411)
Q Consensus       175 ~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~----~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~  250 (411)
                      ..+.++..+.++.+.+.  ..++-|..++........+    ......|.++...++|.+.+ |+.++. |..+|..+++
T Consensus       363 ~~v~~i~~d~~g~lWig--t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~G-l~~~~~~~~~  438 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIG--TDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGN-ISYYNTRLKK  438 (781)
T ss_dssp             SCEEEEEECTTSCEEEE--EBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEE-EEEECSSSCE
T ss_pred             cceEEEEEcCCCCEEEE--eCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCC-EEEEcCCCCc
Confidence            24667777777766543  3344566655544332222    12346788999888887554 666677 9999987765


Q ss_pred             eEEEEeC-CCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          251 RLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       251 ~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .. .+.. ......|.++...++|.+. .|+..| |..||..+++
T Consensus       439 ~~-~~~~~~~~~~~v~~i~~d~~g~lw-igt~~G-l~~~~~~~~~  480 (781)
T 3v9f_A          439 FQ-IIELEKNELLDVRVFYEDKNKKIW-IGTHAG-VFVIDLASKK  480 (781)
T ss_dssp             EE-ECCSTTTCCCCEEEEEECTTSEEE-EEETTE-EEEEESSSSS
T ss_pred             EE-EeccCCCCCCeEEEEEECCCCCEE-EEECCc-eEEEeCCCCe
Confidence            43 3321 1134579999988888754 455544 8999887654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.39  E-value=1e-05  Score=74.06  Aligned_cols=208  Identities=9%  Similarity=-0.090  Sum_probs=115.2

Q ss_pred             EEEEcCCCCEEEEEe-----------CCcEEEEecCCCcceEEeecCCCC-----EEEEEEeccCCeEEEEecCCCCCCC
Q 015198           49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSGG-----FRIVEMLFRCNILALVGAGDNSQYP  112 (411)
Q Consensus        49 ~l~~s~~g~~la~g~-----------dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~s~~~d~~~~  112 (411)
                      .+.++||+++++++.           ++.|.+||..+.+......+.+..     .....+.++|++..++.+...   .
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~---~  145 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG---S  145 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS---S
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC---C
Confidence            799999999998875           578999999997776665542110     223456778887655544321   0


Q ss_pred             CCeEEE--EECCCCcEEEEEeecCce--------eEEEEcCCeEE-----------------------------------
Q 015198          113 PTKVII--WDDHQSRCIGEFAFRSDV--------RSVKLSRDRIV-----------------------------------  147 (411)
Q Consensus       113 d~~i~v--wd~~~~~~~~~~~~~~~i--------~~~~~~~~~~~-----------------------------------  147 (411)
                      ...|.+  +|+.+   +..+...+.+        .-+.+++++.+                                   
T Consensus       146 ~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~  222 (368)
T 1mda_H          146 SAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             SCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             CCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccC
Confidence            167888  88766   3333311100        00111111111                                   


Q ss_pred             ---EE--EcCeEEEEEcCCc--eeeEEEecc----------CCCcceEEEccCCCceEEEEecC---------CCCeEEE
Q 015198          148 ---VV--LEHKIYVYSFVDL--KLLHQIETL----------ANLRGLCCLSHHSSTSVLACPGL---------QRGQVRI  201 (411)
Q Consensus       148 ---~~--~dg~i~iwd~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~g~---------~dg~i~i  201 (411)
                         +.  . +.|.+.|+.+.  +.+..+...          ......+.++++.+  .++++..         .++.. +
T Consensus       223 ~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~--~lyV~~~~~~~~~~~~~~~~~-V  298 (368)
T 1mda_H          223 GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD--GIMILTVEHSRSCLAAAENTS-S  298 (368)
T ss_dssp             TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT--EEEEEEEECSSCTTSCEEEEE-E
T ss_pred             CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC--EEEEEeccccCcccccCCCEE-E
Confidence               11  2 44555555332  111111110          00011244555443  3433221         23444 6


Q ss_pred             EE-cCCcceEEEeccccceeEEEecCCCC-EEEEEc-CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198          202 EH-FGLNMIKLINAHDSHIACFTLTLDGL-LLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       202 ~~-~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (411)
                      ++ ...+.+..+.... ....++|+|||+ ++++.. .++. |.++|+.+++.+.++..+.   ....+++.+
T Consensus       299 iD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~-VsVID~~t~kvv~~I~vg~---~P~~i~~~~  366 (368)
T 1mda_H          299 VTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSVELDK---GPESLSVQN  366 (368)
T ss_dssp             EESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEECCCCS---CCCEEECCC
T ss_pred             EECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCe-EEEEECCCCcEEEEEECCC---CCCEEEeec
Confidence            44 4455566665443 578999999998 455555 5888 9999999999999887532   345666644

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.38  E-value=0.00037  Score=70.82  Aligned_cols=237  Identities=11%  Similarity=0.033  Sum_probs=143.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEee-------cCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRD-------LKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      ....|.++...++|. |-+|+ ++.|..|+...........       -.-....+.++....++.+.++...      +
T Consensus       311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~------~  383 (781)
T 3v9f_A          311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDG------G  383 (781)
T ss_dssp             SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBS------S
T ss_pred             CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCC------C
Confidence            345799999999886 44566 8889999876533211110       0012345777777776665555422      5


Q ss_pred             eEEEEECCCCcEEEEE---e-ecCceeEEEEcCCeEEEE-E-cCeEEEEEcCCceeeEEEec-cCCCcceEEEccCCCce
Q 015198          115 KVIIWDDHQSRCIGEF---A-FRSDVRSVKLSRDRIVVV-L-EHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTS  187 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~---~-~~~~i~~~~~~~~~~~~~-~-dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  187 (411)
                      -|..||..+++.....   . ....|.++...+++.+.+ . ++.|..+|..+++.. .+.. ......+.++..++++.
T Consensus       384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~  462 (781)
T 3v9f_A          384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK  462 (781)
T ss_dssp             CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE
T ss_pred             cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC
Confidence            6888886654332211   1 246789999888777666 4 578999998776543 2221 11123566777777777


Q ss_pred             EEEEecCCCCeEEEEEcCCcceEEEec-c-----ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC--CC
Q 015198          188 VLACPGLQRGQVRIEHFGLNMIKLINA-H-----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR--GV  259 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~~~~~~~~~-~-----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~--~~  259 (411)
                      +.+.+  .. -|..++........+.. .     ...|.++...++|.+.+ |+..+. |..||..+++. ..+..  ..
T Consensus       463 lwigt--~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~G-l~~~~~~~~~~-~~~~~~~~l  536 (781)
T 3v9f_A          463 IWIGT--HA-GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGG-VGIYTPDMQLV-RKFNQYEGF  536 (781)
T ss_dssp             EEEEE--TT-EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSC-EEEECTTCCEE-EEECTTTTC
T ss_pred             EEEEE--CC-ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCC-EEEEeCCCCeE-EEccCCCCC
Confidence            66543  34 45555554433333322 1     35788999999998555 454445 88899766543 34432  11


Q ss_pred             CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      ....|.++...++|.+.+ ++.+|-|..||..+++
T Consensus       537 ~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          537 CSNTINQIYRSSKGQMWL-ATGEGLVCFPSARNFD  570 (781)
T ss_dssp             SCSCEEEEEECTTSCEEE-EETTEEEEESCTTTCC
T ss_pred             CCCeeEEEEECCCCCEEE-EECCCceEEECCCCCc
Confidence            234789999999888554 4456744888776554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.36  E-value=0.0014  Score=60.87  Aligned_cols=229  Identities=7%  Similarity=-0.107  Sum_probs=133.1

Q ss_pred             CEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCC----cEEEEEe
Q 015198           57 GCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA  131 (411)
Q Consensus        57 ~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~----~~~~~~~  131 (411)
                      .+|+.+....|+..+++........   .....+..+.|++ ++.++.+....     +.|+.+++...    .....+.
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~---~~~~~~~~l~~d~~~~~lywsD~~~-----~~I~~~~~~g~~~~~~~~~~~~  155 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS  155 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEE---CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC------CCCEEEEC
T ss_pred             ceeEEeccceeEEEccCCcceeEec---cccCcceEEeeeeccCceEEEecCC-----CeEEEEEcccCCCCCcceEEEe
Confidence            4666667788888888764433222   3344566777775 44555554444     88999987652    2222233


Q ss_pred             -ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec-CCCCeEEEEEcC
Q 015198          132 -FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFG  205 (411)
Q Consensus       132 -~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~i~i~~~~  205 (411)
                       .......+++.+ .+.+.+   ..+.|.+.++........+.....  ....++.++.+..|+.+- ...+.|...+.+
T Consensus       156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~--~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSC--CEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCC--CcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence             345667888886 344333   467899999865444333332222  234455554333444433 234677777777


Q ss_pred             CcceEEEe-ccccceeEEEecCCCCEEEEEcC-CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC
Q 015198          206 LNMIKLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG  283 (411)
Q Consensus       206 ~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg  283 (411)
                      +.....+. ..-.....|++++++..|+.+.. .+. |..+|+........+...........|++. .+.++++-...+
T Consensus       234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE-EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence            76555543 23356789999988777766654 456 999998644333233321122345677773 344555666677


Q ss_pred             cEEEEEccccccCC
Q 015198          284 TVHIFSLRVRVVGE  297 (411)
Q Consensus       284 ~I~vwd~~~~~~~~  297 (411)
                      .|..++..+|+...
T Consensus       312 ~V~~~~~~~G~~~~  325 (400)
T 3p5b_L          312 AIFSANRLTGSDVN  325 (400)
T ss_dssp             SEEEEESSSCCCCE
T ss_pred             eEEEEEcCCCCceE
Confidence            89999977776553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.29  E-value=0.00059  Score=66.65  Aligned_cols=107  Identities=6%  Similarity=0.026  Sum_probs=62.9

Q ss_pred             CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEE-------EEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEE
Q 015198           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRI-------VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG  128 (411)
Q Consensus        57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~  128 (411)
                      ..+++++ ++.|.-+|.++++.+.+..........       ..+... ++.+++.. .+     +.|..+|.++|+.+.
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~-~~~v~~~t-~d-----g~l~AlD~~TG~~~W  141 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY-GDKVFFGT-LD-----ASVVALNKNTGKVVW  141 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE-TTEEEEEE-TT-----TEEEEEESSSCCEEE
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE-CCEEEEEe-CC-----CEEEEEECCCCCEEe
Confidence            3454555 456888899888888777653221000       011122 33444433 23     899999999999998


Q ss_pred             EEeecC-----cee-EEEEcCC---e--EEEE-E-------cCeEEEEEcCCceeeEEEec
Q 015198          129 EFAFRS-----DVR-SVKLSRD---R--IVVV-L-------EHKIYVYSFVDLKLLHQIET  170 (411)
Q Consensus       129 ~~~~~~-----~i~-~~~~~~~---~--~~~~-~-------dg~i~iwd~~~~~~~~~~~~  170 (411)
                      ......     .+. ...+..+   +  .+++ .       ++.|+.+|..+|+.+.....
T Consensus       142 ~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~  202 (582)
T 1flg_A          142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF  202 (582)
T ss_dssp             EEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES
T ss_pred             eecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCC
Confidence            876321     121 1112222   2  3444 2       68999999999998876643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.26  E-value=0.00057  Score=60.91  Aligned_cols=189  Identities=9%  Similarity=-0.033  Sum_probs=109.4

Q ss_pred             EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEEEc-----CeEEEEEcCCce
Q 015198           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLE-----HKIYVYSFVDLK  163 (411)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d-----g~i~iwd~~~~~  163 (411)
                      ....+.+++++.++++....     +.|..||... +....+........+++.+++.+++.+     ..|..+|..+++
T Consensus        33 ~pegia~~~~g~lyv~d~~~-----~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEV-----GEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTT-----TEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcceEEECCCCCEEEEeCCC-----CeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            34566777777766665554     8999999654 444455556678899999998876622     247777877776


Q ss_pred             eeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc--eEEEec---------cccceeEEEecCCCCEEE
Q 015198          164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM--IKLINA---------HDSHIACFTLTLDGLLLA  232 (411)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~--~~~~~~---------~~~~i~~l~~sp~g~~l~  232 (411)
                      ........... ..-.....+++..++ +...++.|+..+.....  +.....         .-...+.+  +++++.|+
T Consensus       107 ~~~~~~~~~~~-~~~g~~~~~~~~~~v-~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          107 VETLLTLPDAI-FLNGITPLSDTQYLT-ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             EEEEEECTTCS-CEEEEEESSSSEEEE-EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             EEEEEeCCCcc-ccCcccccCCCcEEE-EECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            54333321111 111112123333333 33346777775554321  111110         11123445  78887665


Q ss_pred             EEc-CCCeEEEEEECCC-Cce--EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          233 TAS-TRGTLIRIFNTVD-GTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       233 s~s-~dg~~I~vwd~~~-~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      .+. ..+. |..||+.. ++.  ...+...   .....++++++|+++++....+.|.+++.+
T Consensus       183 v~d~~~~~-I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          183 VSNTEKML-LLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEETTTTE-EEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             EEeCCCCE-EEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            554 4566 99999864 331  1222211   235668999999887776677889999864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.26  E-value=0.00093  Score=57.49  Aligned_cols=197  Identities=7%  Similarity=0.002  Sum_probs=114.4

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           39 FSDVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        39 ~~~~h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      .+.+-...+..++|+|++..|++..  ++.|...|.. .+......+ .+....-.+.+.+++.++++...+     +.+
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-~g~~D~EGIa~~~~g~~~vs~E~~-----~~l   93 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-DFVKDLETIEYIGDNQFVISDERD-----YAI   93 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-SSCSSEEEEEECSTTEEEEEETTT-----TEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-CCCCChHHeEEeCCCEEEEEECCC-----CcE
Confidence            3455566899999999877666544  6667777766 343333334 333345556666777776665555     889


Q ss_pred             EEEECCCCcE---EEEEe-------ecCceeEEEEcCCe--EEEE-Ec-C-eEEEEEc-CCceeeEEEec-------cCC
Q 015198          117 IIWDDHQSRC---IGEFA-------FRSDVRSVKLSRDR--IVVV-LE-H-KIYVYSF-VDLKLLHQIET-------LAN  173 (411)
Q Consensus       117 ~vwd~~~~~~---~~~~~-------~~~~i~~~~~~~~~--~~~~-~d-g-~i~iwd~-~~~~~~~~~~~-------~~~  173 (411)
                      .++++.....   +....       .+.....++|+|++  .+++ .. . .|+.|+- ...+.+..+..       ...
T Consensus        94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence            9998665442   23332       13345899999976  3333 22 2 4555551 11122222211       111


Q ss_pred             CcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEeccc---------cceeEEEecCCCCEEEEEcCCCeEEEEE
Q 015198          174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHD---------SHIACFTLTLDGLLLATASTRGTLIRIF  244 (411)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~---------~~i~~l~~sp~g~~l~s~s~dg~~I~vw  244 (411)
                      ....+++.+.  ...+.+.......+.+.+.+++.+..+.-..         ..-..|+|.++|+++++ ++.+. +++|
T Consensus       174 d~S~l~~dp~--tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~-~y~f  249 (255)
T 3qqz_A          174 DVSGAEFNQQ--KNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR-FYRF  249 (255)
T ss_dssp             CCCEEEEETT--TTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE-EEEE
T ss_pred             CceeEEEcCC--CCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCce-EEEE
Confidence            2234444443  3333333456677777888888666654332         25578999999985554 66666 8877


Q ss_pred             EC
Q 015198          245 NT  246 (411)
Q Consensus       245 d~  246 (411)
                      .-
T Consensus       250 ~~  251 (255)
T 3qqz_A          250 TP  251 (255)
T ss_dssp             EC
T ss_pred             Ee
Confidence            64

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.23  E-value=0.0014  Score=58.76  Aligned_cols=227  Identities=9%  Similarity=-0.081  Sum_probs=130.6

Q ss_pred             EEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEE-EEe-ecC
Q 015198           58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIG-EFA-FRS  134 (411)
Q Consensus        58 ~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~-~~~-~~~  134 (411)
                      +|+.+....|+..+++.........+ ..-.....+.|++ ++.++.+....     +.|..+++..+.... .+. .-.
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~-----~~I~r~~~~g~~~~~~~~~~~l~   79 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSGLL   79 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTT-----TEEEEEETTSSSCCCEEEEECCS
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCC-----CcEEEEEccCCCceEEEEcCCCC
Confidence            56666677888899886432222212 2334566777776 34555554444     899999977663211 222 234


Q ss_pred             ceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec-CCCCeEEEEEcCCcce
Q 015198          135 DVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMI  209 (411)
Q Consensus       135 ~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~i~i~~~~~~~~  209 (411)
                      ....+++.+ .+.+..   ..+.|.++++........+.....  ....++.++.+..|+.+- ...+.|...+.++...
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~--~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  157 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD--QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  157 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS--SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe
Confidence            566788875 444433   457899999764332222222222  234444554434444443 2356777777776555


Q ss_pred             EEEe-ccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEE
Q 015198          210 KLIN-AHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI  287 (411)
Q Consensus       210 ~~~~-~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~v  287 (411)
                      ..+. ..-...+.|++++++..|+.+. ..+. |..+|+.... ...+... .......+++.. +.++.+-...+.|..
T Consensus       158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~-I~~~d~dG~~-~~~~~~~-~~~~P~glav~~-~~lywtd~~~~~V~~  233 (318)
T 3sov_A          158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTN-RQAVVKG-SLPHPFALTLFE-DILYWTDWSTHSILA  233 (318)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCS-CEEEECS-CCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCccEEEEeccCCEEEEEECCCCE-EEEEcCCCCc-eEEEecC-CCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence            4443 2234567899999777666555 4566 9999986433 3333321 233566777753 345556556778999


Q ss_pred             EEccccccC
Q 015198          288 FSLRVRVVG  296 (411)
Q Consensus       288 wd~~~~~~~  296 (411)
                      ++..+++..
T Consensus       234 ~~~~~G~~~  242 (318)
T 3sov_A          234 CNKYTGEGL  242 (318)
T ss_dssp             EETTTCCSC
T ss_pred             EECCCCCce
Confidence            998877654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.23  E-value=0.00094  Score=62.68  Aligned_cols=240  Identities=8%  Similarity=-0.044  Sum_probs=135.2

Q ss_pred             CCeEEEEEcCC--CCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           45 IELISVSWNQD--YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        45 ~~V~~l~~s~~--g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      .....|+|+|+  +..|.++. .+.|+.++..+... ... . ........+.+++++.++++..... .....+...+.
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-~~~-~-~~~~~P~giavd~dG~lyVad~~~~-~~~~gv~~~~~  214 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-DIK-T-TNIGQCADVNFTLNGDMVVVDDQSS-DTNTGIYLFTR  214 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE-EEE-C-CCCSCEEEEEECTTCCEEEEECCSC-TTSEEEEEECG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE-EEe-e-cCCCCccEEEECCCCCEEEEcCCCC-cccceEEEEEC
Confidence            34578999995  45566666 68888888865332 222 2 3334466777787776555543210 00022333332


Q ss_pred             CCCcE-EEEEeecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          122 HQSRC-IGEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       122 ~~~~~-~~~~~~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      ..+.. ...+..-.....+++++ ++.+.+   .++.|+.+|..++.....+...........+++++++..|.++-...
T Consensus       215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred             CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence            22211 11222334456788998 777666   46789999988776633332221111223456666666555555566


Q ss_pred             CeEEEEEcCC--cc---eEEEecc---------------ccceeEEEe---------cCCCCEEEEEcCCCeEEEEEECC
Q 015198          197 GQVRIEHFGL--NM---IKLINAH---------------DSHIACFTL---------TLDGLLLATASTRGTLIRIFNTV  247 (411)
Q Consensus       197 g~i~i~~~~~--~~---~~~~~~~---------------~~~i~~l~~---------sp~g~~l~s~s~dg~~I~vwd~~  247 (411)
                      +.|+..+.+.  ..   ...+.+.               -.....+++         .++|.++++-...+. |+.++. 
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~~~-  372 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVLTP-  372 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEECT-
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEECC-
Confidence            7787755442  11   1222221               112456888         777877777666777 999984 


Q ss_pred             CCceEEEEeCCCC----------------CcceEEEEeC-CCCCEEEEEeCCCcEEEEEcc
Q 015198          248 DGTRLQEVRRGVD----------------RAEIYSIALS-PNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       248 ~~~~~~~~~~~~~----------------~~~v~~l~~s-pdg~~l~s~s~dg~I~vwd~~  291 (411)
                      +|.. .++.+...                -.....|+++ ++|.++++=...+.|+.++++
T Consensus       373 ~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          373 EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            6644 34432101                1236789999 666666665566778887764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.18  E-value=0.00077  Score=63.23  Aligned_cols=239  Identities=8%  Similarity=0.023  Sum_probs=131.8

Q ss_pred             CCeEEEEEcC-CCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE-EEEecCCCCCCCCCeEEEEEC
Q 015198           45 IELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        45 ~~V~~l~~s~-~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      .....|+++| ++..|.++. .+.|+.++.+..... .. . ........+.+++++. ++++..... .....+.+.+ 
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~-~-~~~~~P~~ia~d~~G~~lyvad~~~~-~~~~~v~~~~-  211 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TV-Y-SGLSKVRTICWTHEADSMIITNDQNN-NDRPNNYILT-  211 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EE-E-CCCSCEEEEEECTTSSEEEEEECCSC-TTSEEEEEEE-
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EE-e-cCCCCcceEEEeCCCCEEEEEeCCCC-cccceEEEEe-
Confidence            3457899998 466676666 678888888753322 22 1 2334466777777765 444433210 0002344444 


Q ss_pred             CCCcEE--EEEeecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198          122 HQSRCI--GEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (411)
Q Consensus       122 ~~~~~~--~~~~~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (411)
                      ..+...  ..+........++++| ++.+++   .++.|+.++..++.......... ......+++++++.+|.++-..
T Consensus       212 ~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          212 RESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             GGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECTTSSEEEEEETT
T ss_pred             CCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCCEEEEEECC
Confidence            333222  3333344567788999 676665   46889999988765433332221 1234456666777755555556


Q ss_pred             CCeEEEEEcCCc--c---eEEEecc------c---------ccee-EEEec--------CCCCEEEEEcCCCeEEEEEEC
Q 015198          196 RGQVRIEHFGLN--M---IKLINAH------D---------SHIA-CFTLT--------LDGLLLATASTRGTLIRIFNT  246 (411)
Q Consensus       196 dg~i~i~~~~~~--~---~~~~~~~------~---------~~i~-~l~~s--------p~g~~l~s~s~dg~~I~vwd~  246 (411)
                      .+.|..++.++.  .   ...+.+.      .         .... .++..        ++|.++++=...+. |+.++ 
T Consensus       291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~-  368 (430)
T 3tc9_A          291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILT-  368 (430)
T ss_dssp             TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEEC-
T ss_pred             CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEEC-
Confidence            778887555432  1   2222221      0         0112 44443        34666665556677 99998 


Q ss_pred             CCCceEEEEeCC----CC--C---------cceEEEEeCCC-CCEEEEEeCCCcEEEEEcc
Q 015198          247 VDGTRLQEVRRG----VD--R---------AEIYSIALSPN-VQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       247 ~~~~~~~~~~~~----~~--~---------~~v~~l~~spd-g~~l~s~s~dg~I~vwd~~  291 (411)
                      .+|+.......+    ..  .         .....|+++++ +.++++-...+.|+.++++
T Consensus       369 ~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          369 PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            466544333210    00  1         14789999995 5555555556678887764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.17  E-value=0.0037  Score=56.23  Aligned_cols=233  Identities=12%  Similarity=0.096  Sum_probs=122.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEee-c--CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRD-L--KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      ...+.+|.|.+++..+++|..+.|  |......+..... +  ......+..+.+.++..+++ +. .     +.|..- 
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~-g~-~-----g~i~~S-  104 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVNATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIV-GE-P-----PIMLHT-  104 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETTTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEE-EE-T-----TEEEEE-
T ss_pred             CCcEEEEEECCCCcEEEEcCCCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEE-EC-C-----CeEEEE-
Confidence            457999999988888887767754  3333333333322 1  11244567777777544443 32 2     655442 


Q ss_pred             CCCCcEEEEEe----ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          121 DHQSRCIGEFA----FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       121 ~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      ...|+.-....    +...+..+.+.+++.+++  .++.|+.- ...++.-...... ....+..+.+.+++.++++ + 
T Consensus       105 ~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~-~~~~~~~~~~~~~~~~~~~-g-  180 (327)
T 2xbg_A          105 TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQE-AIGVMRNLNRSPSGEYVAV-S-  180 (327)
T ss_dssp             SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECS-CCCCEEEEEECTTSCEEEE-E-
T ss_pred             CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecC-CCcceEEEEEcCCCcEEEE-E-
Confidence            23343322222    234567777766555555  34544321 1223322222221 1123455666666667654 4 


Q ss_pred             CCCeEEE-EEcCCcceEEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC--CCCcceEEEEeC
Q 015198          195 QRGQVRI-EHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG--VDRAEIYSIALS  270 (411)
Q Consensus       195 ~dg~i~i-~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~--~~~~~v~~l~~s  270 (411)
                      .+|.+.. ++..+..-..+ ......+..+.+.+++++++. +.+|. +++.+...|+.-..+...  .....+..+.+.
T Consensus       181 ~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~-~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~  258 (327)
T 2xbg_A          181 SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGK-IAFSDPDNSENWGELLSPLRRNSVGFLDLAYR  258 (327)
T ss_dssp             TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTE-EEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred             CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCce-EEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence            4566665 44323332222 234567888999999886654 45787 777743324432222221  022358899999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccccc
Q 015198          271 PNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       271 pdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      +++.+++++ .+|.| ++..+.|+
T Consensus       259 ~~~~~~~~g-~~g~i-~~S~DgG~  280 (327)
T 2xbg_A          259 TPNEVWLAG-GAGAL-LCSQDGGQ  280 (327)
T ss_dssp             SSSCEEEEE-STTCE-EEESSTTS
T ss_pred             CCCEEEEEe-CCCeE-EEeCCCCc
Confidence            888766655 46666 34444443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.10  E-value=0.0011  Score=59.49  Aligned_cols=173  Identities=12%  Similarity=0.161  Sum_probs=109.4

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeE-------E-EE---E--cCeEEEEEc--CCceeeEEEec-------c
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI-------V-VV---L--EHKIYVYSF--VDLKLLHQIET-------L  171 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~-------~-~~---~--dg~i~iwd~--~~~~~~~~~~~-------~  171 (411)
                      +-+.+||+ +|+.++.+.. +.++.+.+-|+-.       + ++   .  +++|.+|++  .+++ +..+..       .
T Consensus        50 ~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~  126 (355)
T 3amr_A           50 SGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATA  126 (355)
T ss_dssp             TEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECC
T ss_pred             CCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCC
Confidence            89999998 9998888764 5677776666321       2 22   3  578999977  3333 444411       1


Q ss_pred             CCCcceEEEccCC-CceEEEEecCCCCeEEEEEcC--------CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEE
Q 015198          172 ANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFG--------LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIR  242 (411)
Q Consensus       172 ~~~~~~~~~~~~~-~~~~l~~~g~~dg~i~i~~~~--------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~  242 (411)
                      .....-+|+..++ .+.+.++....+|.+..|...        .+.++.+.. .+.+..+...+....|+.+-++.. |.
T Consensus       127 ~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~G-Iw  204 (355)
T 3amr_A          127 INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEA-IW  204 (355)
T ss_dssp             CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTE-EE
T ss_pred             CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccce-EE
Confidence            0222335553233 333333445578888776552        244566554 356778888988889999999988 88


Q ss_pred             EEECC-----CCceEEEEeCCCCCcceEEEEe--CCCCC-EEEEEe-CCCcEEEEEcc
Q 015198          243 IFNTV-----DGTRLQEVRRGVDRAEIYSIAL--SPNVQ-WLAVAS-DKGTVHIFSLR  291 (411)
Q Consensus       243 vwd~~-----~~~~~~~~~~~~~~~~v~~l~~--spdg~-~l~s~s-~dg~I~vwd~~  291 (411)
                      .++.+     +++.+..+....-...+..|++  .++++ +|++++ .++++.|||.+
T Consensus       205 ~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          205 KFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            88865     3445544433223346888888  45666 565555 67789999996

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.09  E-value=0.0045  Score=62.44  Aligned_cols=228  Identities=7%  Similarity=-0.104  Sum_probs=126.9

Q ss_pred             EEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCC----cEEEEEe-
Q 015198           58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA-  131 (411)
Q Consensus        58 ~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~----~~~~~~~-  131 (411)
                      +|+.+....|+..+++........   .....+..+.++. ++.++++....     +.|+.+++...    .....+. 
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~~~l~---~~~~~~~gl~~d~~~~~lY~sD~~~-----~~I~~~~l~g~~~~~~~~~vi~~  468 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR  468 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEECS
T ss_pred             ccccccccceeEeeccCCcceeee---cCCCceEEEeecccCCeeEEeeccc-----eeEEEEeccCCCCCcceeEEEec
Confidence            555656667788777754332222   2333455666665 44455554444     88998887653    2222233 


Q ss_pred             ecCceeEEEEcCCe--EEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC-CCCeEEEEEcCC
Q 015198          132 FRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL-QRGQVRIEHFGL  206 (411)
Q Consensus       132 ~~~~i~~~~~~~~~--~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~dg~i~i~~~~~  206 (411)
                      .......|++.+.+  .+++  ..+.|.+.++........+.....  ....++.++.+..|+.+-. ..+.|...+.++
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~--~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG  546 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  546 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC--CcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence            33556778888654  3333  467899999865443333332222  2344555544334444332 236787777777


Q ss_pred             cceEEEec-cccceeEEEecCCCCEEEEEcC-CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCc
Q 015198          207 NMIKLINA-HDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT  284 (411)
Q Consensus       207 ~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  284 (411)
                      .....+.. .-.....|++++.+..|+.+.. .+. |..+++........+.....-.....|++.. ++++++-...+.
T Consensus       547 ~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~-I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~  624 (791)
T 3m0c_C          547 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEA  624 (791)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTE
T ss_pred             CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc-EEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCE
Confidence            66655543 3356789999987776666654 456 9999985544433333211222445677643 234444445677


Q ss_pred             EEEEEccccccCC
Q 015198          285 VHIFSLRVRVVGE  297 (411)
Q Consensus       285 I~vwd~~~~~~~~  297 (411)
                      |...+..+|+...
T Consensus       625 I~~~dk~tG~~~~  637 (791)
T 3m0c_C          625 IFSANRLTGSDVN  637 (791)
T ss_dssp             EEEEETTTCCCCE
T ss_pred             EEEEeCCCCcceE
Confidence            8888877776543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.08  E-value=0.0024  Score=58.99  Aligned_cols=203  Identities=9%  Similarity=-0.082  Sum_probs=113.5

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      ..+..++|++.+..|....  .+.|..++.+................-+.+.+.....++ +....     +.|.+.++.
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~-~d~~~-----~~I~~~~~d  189 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW-TDSGT-----SRIEVANLD  189 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEE-EETTT-----TEEEECBTT
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEE-EcCCC-----CeEEEEeCC
Confidence            4577899998766666555  788888888754322111110111122233333333444 43333     788888876


Q ss_pred             CCcEEEEEe-ecCceeEEEEcCCe-EEEE---Ec-CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          123 QSRCIGEFA-FRSDVRSVKLSRDR-IVVV---LE-HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       123 ~~~~~~~~~-~~~~i~~~~~~~~~-~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      .......+. .-.....++++|.+ .+.+   .. +.|+.+++..............  ....+++++++..|..+-...
T Consensus       190 g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~--~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          190 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF--WPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS--CEEEEEEEGGGTEEEEEETTT
T ss_pred             CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCC--CeeeEEEeCCCCEEEEEECCC
Confidence            544333333 23567889999754 3333   23 6788888754332222222221  234455554444455555567


Q ss_pred             CeEEEEEcCCcceEEEe-ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          197 GQVRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       197 g~i~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      +.|...+.++.....+. ........|++ ..+.++++-...+. |..+|..+|+.+..+..
T Consensus       268 ~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~-V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          268 HVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS-INSANKFTGKNQEIIRN  327 (386)
T ss_dssp             TEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE-EEEEETTTCCSCEEEEC
T ss_pred             CEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCe-EEEEECCCCcceEEEcc
Confidence            78888777765544443 23344567777 34555566666677 88888777777666654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.07  E-value=0.00036  Score=69.37  Aligned_cols=238  Identities=11%  Similarity=0.007  Sum_probs=121.6

Q ss_pred             EEEEcC-CCCEEEEEe-CC-----------cEEEEecCCCcceEEeecC-CCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           49 SVSWNQ-DYGCFAAGT-SC-----------GFRIYNCEPFKETFRRDLK-SGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        49 ~l~~s~-~g~~la~g~-dg-----------~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      ++++.+ ++++++.|+ +.           .+.+||..+........+. ..........+..++.+++.|+.+    +.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~----~~  265 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND----AK  265 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS----TT
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC----CC
Confidence            566777 888888887 32           4778888765432211111 111122233444566666665532    16


Q ss_pred             eEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEEE----c-----CeEEEEEcCCceeeEEE----eccCCCcceEE
Q 015198          115 KVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVVL----E-----HKIYVYSFVDLKLLHQI----ETLANLRGLCC  179 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~----d-----g~i~iwd~~~~~~~~~~----~~~~~~~~~~~  179 (411)
                      .+.+||..+++....-.  ....-.++...+++++++.    +     ..+.+||..+.+-...-    .........  
T Consensus       266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~--  343 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ--  343 (656)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT--
T ss_pred             ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc--
Confidence            89999988775443222  1222234556667766662    2     46899999876533210    000000000  


Q ss_pred             EccCCCceEEEEecCCCCe---------EEEEEcCCcc-eEEEeccc---------cceeEEEec-CCCCEEEEEcCCC-
Q 015198          180 LSHHSSTSVLACPGLQRGQ---------VRIEHFGLNM-IKLINAHD---------SHIACFTLT-LDGLLLATASTRG-  238 (411)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~---------i~i~~~~~~~-~~~~~~~~---------~~i~~l~~s-p~g~~l~s~s~dg-  238 (411)
                      .....++..+++ |..+|.         +..|+..... ......+.         ..-.++.|. .++++++.|+.++ 
T Consensus       344 ~~~~~~~~iyv~-Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~  422 (656)
T 1k3i_A          344 GLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY  422 (656)
T ss_dssp             GGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred             ceeecCCceEEE-ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence            111122233333 333443         4445444322 11111111         122344443 4778888887542 


Q ss_pred             ----------eEEEEEECCCCceEEEEeCCCCCcc-eEEEEeCCCCCEEEEEeCC-----------CcEEEEEccccc
Q 015198          239 ----------TLIRIFNTVDGTRLQEVRRGVDRAE-IYSIALSPNVQWLAVASDK-----------GTVHIFSLRVRV  294 (411)
Q Consensus       239 ----------~~I~vwd~~~~~~~~~~~~~~~~~~-v~~l~~spdg~~l~s~s~d-----------g~I~vwd~~~~~  294 (411)
                                . |.+||..+.+-............ -.+++..|++++++.|+.+           ..+.+||..+++
T Consensus       423 ~~~~~~~~~~~-v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          423 QDSDATTNAHI-ITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             SSSBCCCCEEE-EECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCCCcCCcceE-EEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence                      5 88888877665433201112222 2344566899999998854           457888887654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.06  E-value=0.0042  Score=56.42  Aligned_cols=203  Identities=9%  Similarity=-0.068  Sum_probs=112.8

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      ..+..++|++.+..|....  .+.|..++.+................-+++.+.....++ +....     +.|.+.++.
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~-~d~~~-----~~I~~~~~d  146 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW-TDSGT-----SRIEVANLD  146 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE-EETTT-----TEEEEEETT
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEE-EcCCC-----CeEEEEcCC
Confidence            3468899998776666655  788888888764322211110111222333333334444 43333     789999976


Q ss_pred             CCcEEEEEe-ecCceeEEEEcCC-eEEEE---Ec-CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          123 QSRCIGEFA-FRSDVRSVKLSRD-RIVVV---LE-HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       123 ~~~~~~~~~-~~~~i~~~~~~~~-~~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      .......+. .-.....++++|. +.+..   .. +.|..+++... ....+.. ........+++++++..|..+-...
T Consensus       147 G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          147 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCC-SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEE-CCCCCcceEEEeCCCCEEEEEECCC
Confidence            544333332 2356788999984 44444   23 77888887543 2222211 1112334555554444455555566


Q ss_pred             CeEEEEEcCCcceEEEe-ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          197 GQVRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       197 g~i~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      +.|...+.++.....+. ........+++ .++.++++-...+. |..+|..+|+.+..+..
T Consensus       225 ~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~-V~~~~~~~G~~~~~i~~  284 (349)
T 3v64_C          225 HVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS-INSANKFTGKNQEIIRN  284 (349)
T ss_dssp             TEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE-EEEEETTTCCSCEEEEC
T ss_pred             CEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCe-EEEEEccCCCccEEecc
Confidence            78888777775544432 33344567777 34555555555666 88888667766655553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.04  E-value=0.00021  Score=72.20  Aligned_cols=245  Identities=11%  Similarity=0.002  Sum_probs=125.5

Q ss_pred             CCCCC-CeEEEEEc-CCCCEEEEEe--CC----cEEEEecCCC-cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCC
Q 015198           41 DVDEI-ELISVSWN-QDYGCFAAGT--SC----GFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (411)
Q Consensus        41 ~~h~~-~V~~l~~s-~~g~~la~g~--dg----~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (411)
                      .+|.- .+...+|| |||++||.+.  +|    .|+++|++++ +. +...+   ......+.|++++..|+....+...
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~  244 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKV---SGTNGEIVWGPDHTSLFYVTKDETL  244 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCE---EEECSCCEECSSTTEEEEEEECTTC
T ss_pred             cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccc---cCceeeEEEecCCCEEEEEEECCCC
Confidence            34554 78899999 9999999766  33    3899999886 42 11111   1112356788886433332222111


Q ss_pred             CCCeEEEEECCCCcE--EEEEe--ecCceeEEEEcCCeEEEE------EcCeEEEEEcCCce-ee--EEEec-cCCCcce
Q 015198          112 PPTKVIIWDDHQSRC--IGEFA--FRSDVRSVKLSRDRIVVV------LEHKIYVYSFVDLK-LL--HQIET-LANLRGL  177 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~--~~~~~--~~~~i~~~~~~~~~~~~~------~dg~i~iwd~~~~~-~~--~~~~~-~~~~~~~  177 (411)
                      ....|.++++.+++.  ...+.  .......+.|+||+++++      ....|+++|+.+++ ..  ..+.. ....  .
T Consensus       245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~--~  322 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV--R  322 (751)
T ss_dssp             CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC--C
T ss_pred             CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc--e
Confidence            114788889887642  23333  234456789999998877      24578999987652 12  22321 2221  1


Q ss_pred             EEEccCCCceEEEEecCCC--C--eEEEEEcCC-cceEE-Eecccc--ceeEEEecCCCCEEEEEcCCCe-EEEEEEC--
Q 015198          178 CCLSHHSSTSVLACPGLQR--G--QVRIEHFGL-NMIKL-INAHDS--HIACFTLTLDGLLLATASTRGT-LIRIFNT--  246 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~d--g--~i~i~~~~~-~~~~~-~~~~~~--~i~~l~~sp~g~~l~s~s~dg~-~I~vwd~--  246 (411)
                      ....+.. +..|++....+  +  .|...+... ..... +..+..  .+..+.+. .+.++++...++. .|+++|+  
T Consensus       323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~  400 (751)
T 2xe4_A          323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADS  400 (751)
T ss_dssp             EEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCT
T ss_pred             EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEeccc
Confidence            2222122 33343333333  3  444455442 23233 333433  34555554 2345556666664 2556675  


Q ss_pred             -----CCCceEEEEeCCCCCcceEEEEe----CCCCC-EEEEEeCC---CcEEEEEccccc
Q 015198          247 -----VDGTRLQEVRRGVDRAEIYSIAL----SPNVQ-WLAVASDK---GTVHIFSLRVRV  294 (411)
Q Consensus       247 -----~~~~~~~~~~~~~~~~~v~~l~~----spdg~-~l~s~s~d---g~I~vwd~~~~~  294 (411)
                           ..++....+... ....+..+.+    ++++. ++++.+..   ..++.+|+.+++
T Consensus       401 ~~~~~~~g~~~~~l~l~-~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          401 QDGVFKAGTGLREVVME-EPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TTSCCCTTTCCEECCCC-CSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             ccccccCCccceEECCC-CceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence                 344413344321 1122344433    44655 44443333   357777777664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.02  E-value=0.00089  Score=66.56  Aligned_cols=233  Identities=9%  Similarity=-0.038  Sum_probs=119.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecC-CCCCCCCCeEEEEE
Q 015198           44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG-DNSQYPPTKVIIWD  120 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~~~d~~i~vwd  120 (411)
                      .....++++..+++++++|+  +..+.+||..+........+...... ......+++.+++.|+ .+.......+.+||
T Consensus       242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd  320 (656)
T 1k3i_A          242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYS  320 (656)
T ss_dssp             CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeC
Confidence            33445678889999999998  56899999876443222222111111 2233334555555555 33111235799999


Q ss_pred             CCCCcEEEEE----e-e-----------cCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCC-------Cc
Q 015198          121 DHQSRCIGEF----A-F-----------RSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLAN-------LR  175 (411)
Q Consensus       121 ~~~~~~~~~~----~-~-----------~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~-------~~  175 (411)
                      ..+++....-    . .           ...+..+.. .++..+.  ....+..||..+.+..........       +.
T Consensus       321 ~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~  399 (656)
T 1k3i_A          321 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM  399 (656)
T ss_dssp             TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred             CCCCcceeCCCccccccccccccceeecCCceEEEEC-CCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCC
Confidence            8887643320    0 0           011111111 1122222  245688899877654433322111       11


Q ss_pred             ceEEEcc-CCCceEEEEecCCCC-----------eEEEEEcCCcceEEEe---ccccc-eeEEEecCCCCEEEEEcCC--
Q 015198          176 GLCCLSH-HSSTSVLACPGLQRG-----------QVRIEHFGLNMIKLIN---AHDSH-IACFTLTLDGLLLATASTR--  237 (411)
Q Consensus       176 ~~~~~~~-~~~~~~l~~~g~~dg-----------~i~i~~~~~~~~~~~~---~~~~~-i~~l~~sp~g~~l~s~s~d--  237 (411)
                      ...++.+ ..+++++++.| .++           .|.+++.....-..+.   .+... -.+++..|+|++++.|+.+  
T Consensus       400 ~~~av~~~~~~~~i~v~GG-~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~  478 (656)
T 1k3i_A          400 CGNAVMYDAVKGKILTFGG-SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG  478 (656)
T ss_dssp             TCEEEEEETTTTEEEEECC-BSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred             CCceEeccCCCCeEEEEeC-CCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence            1222221 22456666644 321           4445554443333332   12222 2345667899999998854  


Q ss_pred             ---------CeEEEEEECCCCceEEEEeC-CCCCcceEEEEeCCCCCEEEEEeC
Q 015198          238 ---------GTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASD  281 (411)
Q Consensus       238 ---------g~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~  281 (411)
                               .. +.+||..+.+-.. +.. ...........+.+||++++.|+.
T Consensus       479 ~~~~~~~~~~~-v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          479 IPFEDSTPVFT-PEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CTTCCCSBCCC-CEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCcCCCCcccc-eEEEcCCCCceee-cCCCCCccccccHhhcCCCcEEEecCCC
Confidence                     45 8999987765332 211 111222334556799999999885

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.02  E-value=0.0033  Score=59.42  Aligned_cols=251  Identities=7%  Similarity=-0.011  Sum_probs=132.9

Q ss_pred             CeEEEEEcC-CCCEEEEEe--CCcEEEEecCCCcceEEeecCC-CCEEEEEEec-------cCCeE-EEEecCCCCC-CC
Q 015198           46 ELISVSWNQ-DYGCFAAGT--SCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLF-------RCNIL-ALVGAGDNSQ-YP  112 (411)
Q Consensus        46 ~V~~l~~s~-~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~-~l~s~~~d~~-~~  112 (411)
                      ....|+|.| ++..|.++.  .+.|++.|.+............ .-.....+.|       ++++. ++++...+.. ..
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            567999999 455555555  4667777877533222221101 1224666777       77665 4444332100 00


Q ss_pred             CCeEEEEECCC-CcEE-----EEEeecCceeEEEEcC-CeEEEE---EcCeEEEEEcC-------Ccee-----------
Q 015198          113 PTKVIIWDDHQ-SRCI-----GEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFV-------DLKL-----------  164 (411)
Q Consensus       113 d~~i~vwd~~~-~~~~-----~~~~~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~-------~~~~-----------  164 (411)
                      ...|.+.+... ++..     ..+..-.....++++| ++.+++   .++.|+.+|+.       ++..           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence            12366665333 2221     2232223445778899 455444   57889999987       5543           


Q ss_pred             eEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc--ce---EEEecc---c------------ccee-EEE
Q 015198          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MI---KLINAH---D------------SHIA-CFT  223 (411)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~---~~~~~~---~------------~~i~-~l~  223 (411)
                      ...+...........+++++++..|.++-.....|+..+.++.  .+   ..+.+.   .            .... .++
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~  379 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF  379 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence            2222111111233456666677654444456677777444332  11   233221   0            1123 344


Q ss_pred             ec-------CCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC-------------CC---------cceEEEEeCCC-C
Q 015198          224 LT-------LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-------------DR---------AEIYSIALSPN-V  273 (411)
Q Consensus       224 ~s-------p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-------------~~---------~~v~~l~~spd-g  273 (411)
                      ..       ++|.++++=..... |+.++ .+|. +.++.+..             ..         .....|+++++ |
T Consensus       380 vd~~~~~~~~~g~lyVaD~~N~r-Ir~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          380 VKNPDYTGEEEYDFYFVDRLNFC-VRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EECTTCCSSCCEEEEEEEGGGTE-EEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EccccccccCCCeEEEEECCCCE-EEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            44       45666666666777 99998 5664 44443210             01         24678999997 6


Q ss_pred             CEEEEEeCCCcEEEEEccccccCCCC
Q 015198          274 QWLAVASDKGTVHIFSLRVRVVGEDS  299 (411)
Q Consensus       274 ~~l~s~s~dg~I~vwd~~~~~~~~~~  299 (411)
                      .++++=.....|+.++++........
T Consensus       457 ~lyVaD~~N~rIrki~~~~~~~~~~~  482 (496)
T 3kya_A          457 MFYVHDQVGHTIRTISMEQEENVAGD  482 (496)
T ss_dssp             EEEEEETTTTEEEEEEECCCC-----
T ss_pred             EEEEEeCCCCEEEEEECCCCcccccC
Confidence            66666666778999999877655433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.99  E-value=0.01  Score=55.00  Aligned_cols=204  Identities=7%  Similarity=-0.086  Sum_probs=115.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCc----ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFK----ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+..|+|++.+..|....  .+.|+.++++...    .............-+++.+.....+++- ...     +.|.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d-~~~-----~~I~  184 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-SVL-----GTVS  184 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEE-TTT-----TEEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEE-CCC-----CeEE
Confidence            45678999998777666665  7888888876421    1111110112222333444344444443 333     8999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCC-eEEEEE----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRD-RIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      +.++........+. .......|+++|. +.+...    .+.|...++........+.....  ....++.++++..|..
T Consensus       185 ~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~--~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          185 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ--WPNGITLDLLSGRLYW  262 (400)
T ss_dssp             EECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS--CEEEEEEETTTTEEEE
T ss_pred             EEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC--ceEEEEEEeCCCEEEE
Confidence            99977655444444 3445789999984 444442    36788888754333222222212  3344555544445555


Q ss_pred             ecCCCCeEEEEEcCCcceEEEecc---ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          192 PGLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      +-...+.|...+.++.....+...   -.....+++. .+.++++-...+. |..+|..+|+.+..+..
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~-V~~~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNLLAE  329 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS-EEEEESSSCCCCEEEEC
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe-EEEEEcCCCCceEEEec
Confidence            555667888877777655554321   2334566663 3445555556677 88899878877766664

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.99  E-value=0.0096  Score=58.57  Aligned_cols=227  Identities=7%  Similarity=-0.082  Sum_probs=134.1

Q ss_pred             CEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee-cC
Q 015198           57 GCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF-RS  134 (411)
Q Consensus        57 ~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~-~~  134 (411)
                      .+|+.+..+.|+..++++........+ .+-.....+.|++ ++.++++....     +.|..+++........+.. ..
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~-----~~I~r~~~~g~~~~~v~~~g~~   80 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPL-TGVKEASALDFDVTDNRIYWTDISL-----KTISRAFMNGSALEHVVEFGLD   80 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCC-CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSCS
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEc-CCCCceEEEEEECCCCEEEEEECCC-----CeEEEEECCCCCcEEEEeCCCC
Confidence            466666788899999986443332222 2233466777775 45555555444     8999999765544333432 24


Q ss_pred             ceeEEEEcCC-eE-EEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec-CCCCeEEEEEcCCcce
Q 015198          135 DVRSVKLSRD-RI-VVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMI  209 (411)
Q Consensus       135 ~i~~~~~~~~-~~-~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~i~i~~~~~~~~  209 (411)
                      ....+++.+. +. +++  ..+.|.+.++........+.....  ....++.+|....|..+- +..+.|...+.++...
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~--~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~  158 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLD--SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER  158 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCC--CcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce
Confidence            5677888754 33 333  457899999864332222222222  334555555333444432 2355677666777666


Q ss_pred             EEEeccccceeEEEecCCCCEEEEEcC-CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEE
Q 015198          210 KLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF  288 (411)
Q Consensus       210 ~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vw  288 (411)
                      ..+...-.....|++++++..|+.+.. .+. |..+|+..... ..+..  .......|++.. +.++++-...+.|...
T Consensus       159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~-I~~~d~dG~~~-~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~  233 (628)
T 4a0p_A          159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNL-IESSNMLGLNR-EVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERA  233 (628)
T ss_dssp             EEEECSCSSEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSC-EEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCcceEEEccccCEEEEEECCCCE-EEEEcCCCCce-EEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence            555545566789999998777666654 456 99999865444 33333  222456777765 4444455557778888


Q ss_pred             EccccccC
Q 015198          289 SLRVRVVG  296 (411)
Q Consensus       289 d~~~~~~~  296 (411)
                      |..+++..
T Consensus       234 dk~tg~~~  241 (628)
T 4a0p_A          234 NKTSGQNR  241 (628)
T ss_dssp             ETTTCCSC
T ss_pred             ECCCCCce
Confidence            87776543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.97  E-value=0.01  Score=54.35  Aligned_cols=231  Identities=16%  Similarity=0.163  Sum_probs=146.6

Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEec-cCCeEEEEecCCCCCCCCCeEEEEECCC-CcE
Q 015198           49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLF-RCNILALVGAGDNSQYPPTKVIIWDDHQ-SRC  126 (411)
Q Consensus        49 ~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~s~~~d~~~~d~~i~vwd~~~-~~~  126 (411)
                      +.-.+|..+.+|.=....+.|+|+++..+.....+ ..  .++-+.| +++...+++.        ..|+.|++.. ..+
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~-~e--~VvfWkWis~~~l~lVT~--------taVyHWsi~~~s~P  138 (494)
T 1bpo_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TD--DVTFWKWISLNTVALVTD--------NAVYHWSMEGESQP  138 (494)
T ss_dssp             EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC-SS--CCCEEEEEETTEEEEECS--------SEEEEEESSSSCCC
T ss_pred             eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec-CC--CceEEEecCCCeEEEEcC--------CeeEEecccCCCCc
Confidence            44567888888877789999999998666555554 22  3555555 4566777774        8999999864 356


Q ss_pred             EEEEe-e----cCceeEEEEcCCeEEEE----------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce-EEE
Q 015198          127 IGEFA-F----RSDVRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS-VLA  190 (411)
Q Consensus       127 ~~~~~-~----~~~i~~~~~~~~~~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~  190 (411)
                      ++.+. |    ...|.....+++.++++          ..|.+.+|..+. +.-+.+++|........+.-++... +++
T Consensus       139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~  217 (494)
T 1bpo_A          139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFC  217 (494)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEE
T ss_pred             hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEE
Confidence            66666 3    46777888899988887          257889999765 4445666665422222222222212 232


Q ss_pred             Eec--CCCCeEEEEEcCCc----c---eEEEe------ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE
Q 015198          191 CPG--LQRGQVRIEHFGLN----M---IKLIN------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (411)
Q Consensus       191 ~~g--~~dg~i~i~~~~~~----~---~~~~~------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (411)
                      ++.  ...+.+.|-.....    .   .+...      ...+--.++..++.-..+..-+.-|. |++||+.++.++..-
T Consensus       218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~-i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMN  296 (494)
T ss_dssp             EEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             EEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce-EEEEecccceeeeee
Confidence            221  12367777443221    0   11111      11223346778888888888899999 999999999999877


Q ss_pred             eCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      +-  ....|..-+-.....=++.....|.|.--.++..+
T Consensus       297 rI--s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          297 RI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EC--CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             cc--cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            65  44566655555555556666788877777666654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.93  E-value=0.0079  Score=51.66  Aligned_cols=199  Identities=10%  Similarity=0.109  Sum_probs=118.5

Q ss_pred             ecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee--cCceeEEEEcCCeEEEE---EcCeEE
Q 015198           82 DLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF--RSDVRSVKLSRDRIVVV---LEHKIY  155 (411)
Q Consensus        82 ~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~---~dg~i~  155 (411)
                      .+.+-...+..+.++++ +.+++....+     +.|...|.. ++.++.+..  ......+++.+++.+++   .++.+.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~-----~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKP-----AAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIY   94 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETT-----EEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCC-----CeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence            34344456777888864 3444444444     899999987 888888874  36788999999988866   467899


Q ss_pred             EEEcCCce---eeEEEecc----CCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC----cceEEEe-------cccc
Q 015198          156 VYSFVDLK---LLHQIETL----ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL----NMIKLIN-------AHDS  217 (411)
Q Consensus       156 iwd~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~-------~~~~  217 (411)
                      ++++....   .+......    ......-.+++++++..|.++. ......|+..++    ..+..+.       .+..
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~-E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK-EKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE-ESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE-CcCCceEEEEcccccCCceeeecchhhccccccC
Confidence            99885543   22333211    1112334555555553443333 222334433322    1222221       1234


Q ss_pred             ceeEEEecCCCCE-EEEEcCCCeEEEEEECCCCceEEEEeCCCC-------CcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          218 HIACFTLTLDGLL-LATASTRGTLIRIFNTVDGTRLQEVRRGVD-------RAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       218 ~i~~l~~sp~g~~-l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-------~~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      .+..++++|.... ++....... +.++|. .|+.+..+.-...       -...-.|+|.++|++ +..++-+.+++|.
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~-L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~  250 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRA-LQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFT  250 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTE-EEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEE
T ss_pred             CceeEEEcCCCCeEEEEECCCCe-EEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEE
Confidence            5789999987654 455555555 999996 5766665553211       125689999999984 4457777666664


Q ss_pred             c
Q 015198          290 L  290 (411)
Q Consensus       290 ~  290 (411)
                      -
T Consensus       251 ~  251 (255)
T 3qqz_A          251 P  251 (255)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.90  E-value=0.012  Score=52.58  Aligned_cols=204  Identities=8%  Similarity=-0.103  Sum_probs=113.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCC---cceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEE
Q 015198           44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPF---KETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+..++|++++..|....  .+.|..++.+..   ...... +...-.....+++++ ++.++++....     +.|.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-~~~~~~~p~glavd~~~~~ly~~d~~~-----~~I~  102 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-ISRDIQAPDGLAVDWIHSNIYWTDSVL-----GTVS  102 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECSSCSCCCEEEEETTTTEEEEEETTT-----TEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-EeCCCCCcCEEEEeecCCeEEEEECCC-----CEEE
Confidence            34578999999877666665  788888888751   111111 111111122333332 33344443333     8999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCC-eEEEE-E---cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRD-RIVVV-L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~-~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      +.++........+. .......++++|. +.++. .   .+.|..+++. ++....+... .......++.++++..|..
T Consensus       103 ~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~-~~~~P~gla~d~~~~~lY~  180 (316)
T 1ijq_A          103 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTE-NIQWPNGITLDLLSGRLYW  180 (316)
T ss_dssp             EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECS-SCSCEEEEEEETTTTEEEE
T ss_pred             EEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEEC-CCCCceEEEEeccCCEEEE
Confidence            99976544333333 3356789999984 44444 2   2678888874 3333333211 1123445555544445555


Q ss_pred             ecCCCCeEEEEEcCCcceEEEecc---ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          192 PGLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      +-...+.|...+.++.....+...   -.....+++. .+.++++-...+. |..+|..+|+.+..+..
T Consensus       181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~-V~~~~~~~g~~~~~i~~  247 (316)
T 1ijq_A          181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNLLAE  247 (316)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE-EEEEETTTCCCCEEEEC
T ss_pred             EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe-EEEEeCCCCcceEEEec
Confidence            555677888877777655554321   2345677774 3555555556677 88888777776655543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.78  E-value=0.0015  Score=68.44  Aligned_cols=221  Identities=12%  Similarity=0.147  Sum_probs=144.2

Q ss_pred             CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcC
Q 015198           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR  143 (411)
Q Consensus        64 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~  143 (411)
                      ...|.|.|+.......++..     ..-+..-+|...+++--..      .++.|+|+++.+.++.+.....|.--.|-.
T Consensus        47 ~~~vvIidl~~~~~~~rrpi-----~AdsAIMnP~~~iiALrag------~~lQiFnl~~k~klks~~~~e~VvfWkWis  115 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPI-----SADSAIMNPASKVIALKAG------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  115 (1630)
T ss_pred             CceEEEEECCCCCCcccccc-----cchhhccCCCcceEEEecC------CeEEEeehHHhhhhcccccCCCceEEEecC
Confidence            44788888887555443332     2222233454444444332      899999999999999998888888888865


Q ss_pred             CeEEE-EEcCeEEEEEcCC-ceeeEEEeccC--CCcceEEEccCCCceEEEEecC------CCCeEEEEEcCCcceEEEe
Q 015198          144 DRIVV-VLEHKIYVYSFVD-LKLLHQIETLA--NLRGLCCLSHHSSTSVLACPGL------QRGQVRIEHFGLNMIKLIN  213 (411)
Q Consensus       144 ~~~~~-~~dg~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~------~dg~i~i~~~~~~~~~~~~  213 (411)
                      +..+. +.+..|+.|++.. ..+.+.+..|.  ....++.+..+++.++++..|-      -.|.+.++....+..+.+.
T Consensus       116 ~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ie  195 (1630)
T 1xi4_A          116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  195 (1630)
T ss_pred             CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhh
Confidence            55444 4999999999963 24444443331  2346778888888888876652      4578888888888888889


Q ss_pred             ccccceeEEEec--CC-CCEEEEEcC---CCeEEEEEECCCC---ceEE-----E--EeCCCCCcceEEEEeCCCCCEEE
Q 015198          214 AHDSHIACFTLT--LD-GLLLATAST---RGTLIRIFNTVDG---TRLQ-----E--VRRGVDRAEIYSIALSPNVQWLA  277 (411)
Q Consensus       214 ~~~~~i~~l~~s--p~-g~~l~s~s~---dg~~I~vwd~~~~---~~~~-----~--~~~~~~~~~v~~l~~spdg~~l~  277 (411)
                      +|.+....+.+.  +. ..+++.+..   .+. ++|-++...   ....     .  +.......-..++..++.-..+.
T Consensus       196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k-Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy  274 (1630)
T 1xi4_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (1630)
T ss_pred             HhHhhhheeccCCCCCCceEEEEEEecCCCce-EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence            998877665553  11 224433322   256 999988542   1110     0  11100122344677788777888


Q ss_pred             EEeCCCcEEEEEccccccC
Q 015198          278 VASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       278 s~s~dg~I~vwd~~~~~~~  296 (411)
                      ..+.-|.|++||+.++.+.
T Consensus       275 ~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          275 LITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             EEecCceEEEEecccchhh
Confidence            8999999999999999875

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.69  E-value=0.00099  Score=67.32  Aligned_cols=198  Identities=9%  Similarity=0.007  Sum_probs=106.3

Q ss_pred             EEEEEecc-CCeEEEEecCCCCCCCCCeEEEEECCCC-cEEEEEeecCceeEEEEcCCeEEEE---Ec-----CeEEEEE
Q 015198           89 RIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQS-RCIGEFAFRSDVRSVKLSRDRIVVV---LE-----HKIYVYS  158 (411)
Q Consensus        89 ~~~~~~~~-~~~~~l~s~~~d~~~~d~~i~vwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~---~d-----g~i~iwd  158 (411)
                      .+..+.|+ |++..++-..+........|+++|+.++ +.+.. ........+.|+||++.++   .+     ..|++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            66778899 9987665322110001147999999998 63211 0112245788999986665   33     3688899


Q ss_pred             cCCcee--eEEEeccCCCcceEEEccCCCceEEEEecCC--CCeEEEEEcCCc--ce--EEE-eccccceeEEEecCCCC
Q 015198          159 FVDLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQ--RGQVRIEHFGLN--MI--KLI-NAHDSHIACFTLTLDGL  229 (411)
Q Consensus       159 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--dg~i~i~~~~~~--~~--~~~-~~~~~~i~~l~~sp~g~  229 (411)
                      +.+++.  ...+..... .....+.+++++++|++....  ...|++.+....  ..  ..+ .........+.|+..+.
T Consensus       254 lgt~~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~  332 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNP-LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH  332 (751)
T ss_dssp             TTSCGGGCEEEEECCCT-TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred             CCCCchhcEEEEecCCC-ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence            877642  223332222 234566777788877765432  334555555432  22  333 33344555666554444


Q ss_pred             EEEEEcCC----CeEEEEEECCCCceEEE-EeCCCCCcceEEEEeCCCCCEEEEEeCCCc--EEEEEc
Q 015198          230 LLATASTR----GTLIRIFNTVDGTRLQE-VRRGVDRAEIYSIALSPNVQWLAVASDKGT--VHIFSL  290 (411)
Q Consensus       230 ~l~s~s~d----g~~I~vwd~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~--I~vwd~  290 (411)
                      +++....+    .. |..+|+.++..... +..+.....+..+.+. .+.++++...++.  |+++++
T Consensus       333 l~~~t~~~~a~~~~-L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          333 LVILTNEGGAVNHK-LLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEECTTTCTTCE-EEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEeCCCCCCCcE-EEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            44554443    25 77778765322222 2221122245666665 3345566677775  455554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.69  E-value=0.026  Score=50.37  Aligned_cols=200  Identities=12%  Similarity=-0.016  Sum_probs=113.0

Q ss_pred             CeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcc---eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      .+..++|.+.+..|....  .+.|..++.+....   .....+  ....-+++.+.....+ ++....     +.|.+++
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l--~~p~glavd~~~g~ly-~~d~~~-----~~I~~~~  107 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL--LSPDGLACDWLGEKLY-WTDSET-----NRIEVSN  107 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC--SCCCEEEEETTTTEEE-EEETTT-----TEEEEEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC--CCccEEEEEcCCCeEE-EEECCC-----CEEEEEE
Confidence            467899998766666555  78888888875421   111111  1222233333333344 443333     8899999


Q ss_pred             CCCCcEEEEEe-ecCceeEEEEcCC-eEEEE-E---cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          121 DHQSRCIGEFA-FRSDVRSVKLSRD-RIVVV-L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       121 ~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~-~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      +........+. .......++++|. +.+.. .   .+.|+.+++.. +....+... .-.....+++++++..|..+-.
T Consensus       108 ~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~  185 (318)
T 3sov_A          108 LDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINS-EIYWPNGLTLDYEEQKLYWADA  185 (318)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECS-SCSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEEC-CCCCccEEEEeccCCEEEEEEC
Confidence            76543332232 3456788999985 44443 2   36788888753 333333211 1123345555554445555555


Q ss_pred             CCCeEEEEEcCCcceEEEec-cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          195 QRGQVRIEHFGLNMIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       195 ~dg~i~i~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      ..+.|...+.++.....+.. .......+++. .+.++.+-...+. |..+|..+|+....+..
T Consensus       186 ~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~-V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          186 KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHS-ILACNKYTGEGLREIHS  247 (318)
T ss_dssp             TTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTE-EEEEETTTCCSCEEEEC
T ss_pred             CCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCe-EEEEECCCCCceEEEeC
Confidence            67788887777755554432 33445667775 3345555555667 99999878877666654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.68  E-value=0.0069  Score=56.69  Aligned_cols=152  Identities=7%  Similarity=0.005  Sum_probs=93.0

Q ss_pred             ceeEEEEcCC--eEEEEE--cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCC----eEEEEEcCC
Q 015198          135 DVRSVKLSRD--RIVVVL--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG----QVRIEHFGL  206 (411)
Q Consensus       135 ~i~~~~~~~~--~~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg----~i~i~~~~~  206 (411)
                      ....++++|+  +.+.+.  .+.|+.+|+..++...... ..  .....+++++++..|+++...++    .+.+....+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~--~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GL--SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CC--SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CC--CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence            4568899973  554442  2789999987766544333 22  24566777777775555443222    233333333


Q ss_pred             cce--EEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE-eCC
Q 015198          207 NMI--KLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA-SDK  282 (411)
Q Consensus       207 ~~~--~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~d  282 (411)
                      ...  ..+.. ......++++| +|.++++-..++. |+.++...+......... .......|+|+|+|++|+.+ ...
T Consensus       215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~-V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQ-VFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTE-EEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEEEETTT
T ss_pred             ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCE-EEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEEEECCC
Confidence            322  23322 33456788999 7777777667788 999998766543233321 22357899999999955544 456


Q ss_pred             CcEEEEEccc
Q 015198          283 GTVHIFSLRV  292 (411)
Q Consensus       283 g~I~vwd~~~  292 (411)
                      +.|..++.+.
T Consensus       292 ~~I~~~~~d~  301 (430)
T 3tc9_A          292 HYILRSDYDW  301 (430)
T ss_dssp             TEEEEEEEET
T ss_pred             CEEEEEeCCc
Confidence            7899988764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.68  E-value=0.047  Score=55.09  Aligned_cols=204  Identities=7%  Similarity=-0.095  Sum_probs=111.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCc----ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFK----ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ...+..|+|.+....|+...  .+.|+.++++...    .............-+++.|....++++- ...     +.|.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD-~~~-----~~I~  496 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-SVL-----GTVS  496 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEE-TTT-----TEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEe-cCC-----CeEE
Confidence            45577899998666666555  6778888876421    1111110112223344444444444444 333     8999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCC-eEEEEE----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRD-RIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      +.++........+. .......|+++|. +.+.+.    .+.|...++........+.....  ....++.++....|++
T Consensus       497 v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~--~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          497 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ--WPNGITLDLLSGRLYW  574 (791)
T ss_dssp             EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS--CEEEEEEETTTTEEEE
T ss_pred             EEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC--CceEEEEecCCCeEEE
Confidence            99976554433333 3456789999986 444442    26788888864433333332222  3344454433334444


Q ss_pred             ecCCCCeEEEEEcCCcceEEEecc---ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          192 PGLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      +-...+.|...+.++.....+...   -.....|++.. +.++++-...+. |...|..+|+.+..+..
T Consensus       575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~-I~~~dk~tG~~~~~l~~  641 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEA-IFSANRLTGSDVNLLAE  641 (791)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTE-EEEEETTTCCCCEEEEC
T ss_pred             EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCE-EEEEeCCCCcceEEeec
Confidence            444567788877777665555321   12334566632 234444445566 88888888876666643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.60  E-value=0.012  Score=52.24  Aligned_cols=150  Identities=4%  Similarity=0.033  Sum_probs=99.1

Q ss_pred             EEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecC---------ceeEEEE---cCCeEEEE-E-------
Q 015198           92 EMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS---------DVRSVKL---SRDRIVVV-L-------  150 (411)
Q Consensus        92 ~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~---------~i~~~~~---~~~~~~~~-~-------  150 (411)
                      +..|++ ++.++++.-..     +.|..||...+..... ....         .+..+.+   .|++++++ .       
T Consensus        17 ~~~wd~~~g~~~vs~l~~-----g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYK-----GRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             CEEEETTTTEEEEEETTT-----TEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             CccCcCCCCEEEEEeccC-----CEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            455654 56667776555     9999999876654433 3221         4578999   68887776 2       


Q ss_pred             --------cCeEEEEEcC---CceeeEEEecc--C---------CCcceEEEccCCCceEEEEecCCC-CeEEEEEcCCc
Q 015198          151 --------EHKIYVYSFV---DLKLLHQIETL--A---------NLRGLCCLSHHSSTSVLACPGLQR-GQVRIEHFGLN  207 (411)
Q Consensus       151 --------dg~i~iwd~~---~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~l~~~g~~d-g~i~i~~~~~~  207 (411)
                              +..|..||+.   +++.+......  .         .......+..+++|...+. ++.. +.|...+.+++
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt-~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA-FALGMPAIARVSADGK  169 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE-EEESSCEEEEECTTSC
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe-CCCCCCeEEEEeCCCC
Confidence                    4779999998   88887766532  1         1123556777777766553 4445 56666666665


Q ss_pred             ceEEEecc------ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC
Q 015198          208 MIKLINAH------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (411)
Q Consensus       208 ~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (411)
                      .+..+...      ....+.|+++|+|.+|++....+. |..+|+.+.
T Consensus       170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~-L~~fD~~~p  216 (334)
T 2p9w_A          170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA-LTAFDVSKP  216 (334)
T ss_dssp             CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS-EEEEECSSS
T ss_pred             EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe-EEEEcCCCC
Confidence            44433211      223679999999998888877898 999998743

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.53  E-value=0.00032  Score=70.10  Aligned_cols=229  Identities=7%  Similarity=-0.104  Sum_probs=116.7

Q ss_pred             EEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCC----CcEEEEEe-
Q 015198           58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQ----SRCIGEFA-  131 (411)
Q Consensus        58 ~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~----~~~~~~~~-  131 (411)
                      +|+....+.|+..++++......  + ........+.|++ ++.++++....     +.|+.+++..    ......+. 
T Consensus       379 ~ll~~~~~~I~~id~~~~~~~~~--~-~~~~~p~gla~d~~~~~Ly~sD~~~-----~~I~~~~~~g~~~~~~~~~~i~~  450 (699)
T 1n7d_A          379 YLFFTNRHEVRKMTLDRSEYTSL--I-PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR  450 (699)
T ss_dssp             CBCCCCTTC-CEECTTSCCEECC--S-CCCTTCCCCEEETTTTEEEECCTTT-----TSBEEEESCCCCC-CCCCCBCCS
T ss_pred             eEEecCccceEEEeCCCCcceee--e-ccCcceEEEccccccCeEEEEecCC-----CeEEEEecCCCCCCcceEEEEeC
Confidence            34444456677777765332111  1 1112234555664 34555554444     7888888765    12111111 


Q ss_pred             ecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC-CCeEEEEEcCC
Q 015198          132 FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ-RGQVRIEHFGL  206 (411)
Q Consensus       132 ~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-dg~i~i~~~~~  206 (411)
                      .......|++.+ .+.+++   ..+.|.++++........+.....  ....++.++.+..|+.+... .+.|...+..+
T Consensus       451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~--~P~giavDp~~g~ly~td~~~~~~I~~~~~dG  528 (699)
T 1n7d_A          451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  528 (699)
T ss_dssp             CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSC--CCCCEECCSSSSCCEECCCSSSCCEEBCCSSS
T ss_pred             CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCC--CcceEEEccCCCcEEEcccCCCCeEEEEeCCC
Confidence            112345677764 333333   467899999765433322222212  22233444433344443322 25676655555


Q ss_pred             cceEEEe-ccccceeEEEecCCCCEEE-EEcCCCeEEEEEECCCCceEEEEeCC-CCCcceEEEEeCCCCCEEEEEeCCC
Q 015198          207 NMIKLIN-AHDSHIACFTLTLDGLLLA-TASTRGTLIRIFNTVDGTRLQEVRRG-VDRAEIYSIALSPNVQWLAVASDKG  283 (411)
Q Consensus       207 ~~~~~~~-~~~~~i~~l~~sp~g~~l~-s~s~dg~~I~vwd~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~dg  283 (411)
                      .....+. ..-...+.|+|+|++..|+ +-...+. |.++|+.. .....+... ........|++..+ .++++....+
T Consensus       529 ~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~-I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~  605 (699)
T 1n7d_A          529 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINE  605 (699)
T ss_dssp             CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE-EEEECSSS-SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred             CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe-EEEEccCC-CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence            4444332 2233456899998765554 4445566 99999864 333334321 11123445566443 4455555667


Q ss_pred             cEEEEEccccccCCCC
Q 015198          284 TVHIFSLRVRVVGEDS  299 (411)
Q Consensus       284 ~I~vwd~~~~~~~~~~  299 (411)
                      .|..++..+++....+
T Consensus       606 ~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          606 AIFSANRLTGSDVNLL  621 (699)
T ss_dssp             CEEEEETTTEEEEECC
T ss_pred             eEEEEEccCCCceEEe
Confidence            8999998887765433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.50  E-value=0.09  Score=51.67  Aligned_cols=201  Identities=8%  Similarity=-0.082  Sum_probs=116.7

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECC
Q 015198           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~  122 (411)
                      ..+..|+|++.+..|..+.  ++.|..++++................-+++.|.....+++- ...     +.|.+.++.
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD-~~~-----~~I~v~~~d  110 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWAD-TGT-----NRIEVSKLD  110 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE-TTT-----TEEEEEETT
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEE-CCC-----CEEEEEecC
Confidence            4578999999877777666  78888888875332222211112223344444444444443 333     899999976


Q ss_pred             CCcEEEEE-eecCceeEEEEcC-CeEEEEE----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          123 QSRCIGEF-AFRSDVRSVKLSR-DRIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       123 ~~~~~~~~-~~~~~i~~~~~~~-~~~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      .......+ ..-.....++++| .+.+...    .+.|...++..... ..+....  .....++.++++..|..+-...
T Consensus       111 G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~--~~P~GlalD~~~~~LY~aD~~~  187 (628)
T 4a0p_A          111 GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNV--GRANGLTIDYAKRRLYWTDLDT  187 (628)
T ss_dssp             STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSC--SSEEEEEEETTTTEEEEEETTT
T ss_pred             CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCC--CCcceEEEccccCEEEEEECCC
Confidence            54432223 2334568999997 4555442    45788888754433 2332222  2344555555444555555567


Q ss_pred             CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198          197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       197 g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (411)
                      +.|...+.++.....+...-.....+++.. +.++++-...+. |...|..+|+....+.
T Consensus       188 ~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~-I~~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          188 NLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRS-IERANKTSGQNRTIIQ  245 (628)
T ss_dssp             TEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEEE
T ss_pred             CEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCE-EEEEECCCCCceEEEe
Confidence            788887777655455544444456777764 444455445677 9999987776555544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.40  E-value=0.0079  Score=56.35  Aligned_cols=151  Identities=9%  Similarity=0.086  Sum_probs=88.3

Q ss_pred             ceeEEEEcCC---eEEEEE--cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC---Ce-EEEEEcC
Q 015198          135 DVRSVKLSRD---RIVVVL--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR---GQ-VRIEHFG  205 (411)
Q Consensus       135 ~i~~~~~~~~---~~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d---g~-i~i~~~~  205 (411)
                      ....++++|+   +.+.+.  .+.|+.+|+.+++...... ...  ....+++++++.+++ +....   .. +......
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~--~P~giavd~dG~lyV-ad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIG--QCADVNFTLNGDMVV-VDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCS--CEEEEEECTTCCEEE-EECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCC--CccEEEECCCCCEEE-EcCCCCcccceEEEEECC
Confidence            3568899984   666553  3789999987776654433 222  345566666666433 33211   11 2222222


Q ss_pred             Ccce--EEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECCCCceEEEE-eCCCCCcceEEEEeCCCCCEEEEE-e
Q 015198          206 LNMI--KLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEV-RRGVDRAEIYSIALSPNVQWLAVA-S  280 (411)
Q Consensus       206 ~~~~--~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~l~s~-s  280 (411)
                      ....  ..+. .-.....++++| +|.++++-..++. |+.+|..++.....+ ... .......|+|+|+|++|+.+ .
T Consensus       216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~-V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAM-ISSYDPATGTLTEEEVMMD-TKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSE-EEEECTTTCCEEEEEEECS-CCSSCEEEEECTTSSEEEEEET
T ss_pred             CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCE-EEEEECCCCeEEEEEeccC-CCCCcccEEEeCCCCEEEEEeC
Confidence            2111  1222 233456788999 7776666666777 999998878763333 221 22234579999999965554 4


Q ss_pred             CCCcEEEEEccc
Q 015198          281 DKGTVHIFSLRV  292 (411)
Q Consensus       281 ~dg~I~vwd~~~  292 (411)
                      ..+.|+.++++.
T Consensus       293 ~~~~I~~~~~d~  304 (433)
T 4hw6_A          293 GKHCIYRVDYNR  304 (433)
T ss_dssp             TTTEEEEEEBCT
T ss_pred             CCCEEEEEeCCC
Confidence            567798888763

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.37  E-value=0.00076  Score=67.39  Aligned_cols=201  Identities=9%  Similarity=-0.093  Sum_probs=108.7

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCcEEEEecCC----CcceEEeecCCCCEEEEEEecc-CCeEEEEecCCCCCCCCCeEE
Q 015198           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEP----FKETFRRDLKSGGFRIVEMLFR-CNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ..+..|+|.+.+..|+...  .+.|+.++++.    ......  +.........+++. ..+.++++....     +.|.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~--i~~~~~~P~glavD~~~g~LY~tD~~~-----~~I~  478 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSNIYWTDSVL-----GTVS  478 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB--CCSCC--CCCEECCCSSSBCEECCTTT-----SCEE
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE--EeCCCCCcceEEEEeeCCcEEEEeccC-----CeEE
Confidence            4567889998877777766  78899888874    111111  11111122334444 233444443333     8899


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCCe-EEEEE----cCeEEEEEcCCceeeEEEe-ccCCCcceEEEccCCCceEEE
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDR-IVVVL----EHKIYVYSFVDLKLLHQIE-TLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~----dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      ++++........+. .......++++|.+ .+++.    .+.|+.+++.. .....+. ........+++.+..  ..|+
T Consensus       479 v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~PnGlavd~~~--~~LY  555 (699)
T 1n7d_A          479 VADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLS--GRLY  555 (699)
T ss_dssp             EEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSCCCEEECTTT--CCEE
T ss_pred             EEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCccEEEEeccC--CEEE
Confidence            99976554333333 23456788898854 33332    26777777643 2222221 111111234444433  3344


Q ss_pred             EecCCCCeEEEEEcCCcceEEEecc---ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          191 CPGLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      ++-...+.|...+..+.....+...   ......|++..+ .++++....+. |..+|..+|+.+..+..
T Consensus       556 ~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~-V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          556 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA-IFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             EEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC-EEEEETTTEEEEECCCT
T ss_pred             EEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe-EEEEEccCCCceEEeec
Confidence            4445667888877766554444321   123345555443 34455555677 99999888887766654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.34  E-value=0.089  Score=51.63  Aligned_cols=228  Identities=9%  Similarity=-0.072  Sum_probs=120.1

Q ss_pred             CEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcE-EEEEee-c
Q 015198           57 GCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRC-IGEFAF-R  133 (411)
Q Consensus        57 ~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~-~~~~~~-~  133 (411)
                      .+|+-+....|+..+++.......... ..-.....+.+++ ++.++++-...     +.|..+++..... ...+.. -
T Consensus        10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~~~~ld~~~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~~v~~~~~   83 (619)
T 3s94_A           10 PLLLYANRRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSGL   83 (619)
T ss_dssp             CCEEEECSSBEEEECCC---------C-BCCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC-----CEEEECSSC
T ss_pred             ceEEEeccccEEEEeCCCCcceEEEEE-cCCCceEEEEEEeCCCEEEEEECCC-----CeEEEEEccCCCceEEEEeCCC
Confidence            355666678888888875321121111 2333456666665 44555554443     8899999765532 222222 2


Q ss_pred             CceeEEEEcCC-eEEEE---EcCeEEEEEcCCceeeEEEe-ccCCCcceEEEccCCCceEEEEec-CCCCeEEEEEcCCc
Q 015198          134 SDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIE-TLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLN  207 (411)
Q Consensus       134 ~~i~~~~~~~~-~~~~~---~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~i~i~~~~~~  207 (411)
                      .....+++++. +.+.+   ..+.|.+.++.... ...+. ........+++.+  .+..|..+- ...+.|.....++.
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~Iavdp--~~g~ly~tD~g~~~~I~r~~~dG~  160 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDP--SSGFMYWTDWGEVPKIERAGMDGS  160 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCCEEEET--TTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCceEEEec--CCCeEEEeccCCCCEEEEEECCCC
Confidence            56788999874 44444   46889999986533 33332 2222223344444  323343332 22456666666665


Q ss_pred             ceEEEe-ccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcE
Q 015198          208 MIKLIN-AHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV  285 (411)
Q Consensus       208 ~~~~~~-~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I  285 (411)
                      ....+. ..-.....|++++++..|+.+. ..+. |..+|+.... ...+... .......|++..+ .++++-...+.|
T Consensus       161 ~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~-I~~~~~dG~~-~~~~~~~-~~~~P~gi~~~~~-~ly~td~~~~~V  236 (619)
T 3s94_A          161 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTN-RQAVVKG-SLPHPFALTLFED-ILYWTDWSTHSI  236 (619)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC-EEEESSSCCE-EC----------CCCEEESSS-EEEEECTTTCSE
T ss_pred             ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe-EEEecCCCCc-cEEEEeC-CCCCceEEEEeCC-EEEEecCCCCEE
Confidence            554443 2344568899998766666554 4556 9999985433 3223211 1112346677655 444444456789


Q ss_pred             EEEEccccccCC
Q 015198          286 HIFSLRVRVVGE  297 (411)
Q Consensus       286 ~vwd~~~~~~~~  297 (411)
                      ...|..+++...
T Consensus       237 ~~~d~~tg~~~~  248 (619)
T 3s94_A          237 LACNKYTGEGLR  248 (619)
T ss_dssp             EEEESSSCCCCE
T ss_pred             EEEECCCCcccE
Confidence            999988876543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.29  E-value=0.18  Score=50.72  Aligned_cols=232  Identities=14%  Similarity=0.122  Sum_probs=129.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      ...|.++.-..+|. |-.|+...+..||-..... +...-......+.++....++.+.++..       .-+..||..+
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~GL~ryDG~~~~~-~~~~~~~~~~~i~~i~~d~~g~lWigT~-------~Gl~~yd~~~   91 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKGLFSYDGYSTQQ-HFTYGENNNTRIYCGVIIDNTYLYMGTD-------NGILVYNYRA   91 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSCEEEECSSCEEE-CSCTTSTTSSCEEEEEEETTTEEEEEET-------TEEEEEETTT
T ss_pred             cceEEEEEECCCCC-EEEEECCCccccCCCceEE-EEccCCCCCceEEEEEEcCCCcEEEEeC-------CCeEEEeCCC
Confidence            46799999888885 4556644566677432111 1100011234466666666665555542       4578999776


Q ss_pred             CcEEEEEe-ecCceeEEEEcCCeEEEEEcCeEEEEEcCCceeeEEEec---cCCCcceEEEccCCCceEEEEecCCCCeE
Q 015198          124 SRCIGEFA-FRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIET---LANLRGLCCLSHHSSTSVLACPGLQRGQV  199 (411)
Q Consensus       124 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~g~~dg~i  199 (411)
                      .+...... ....|.++.......+++..+.+..||..+++.. .+..   ......+.++..+.++.+.+.+  .+| +
T Consensus        92 ~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt--~~G-l  167 (758)
T 3ott_A           92 DRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGT--YNG-L  167 (758)
T ss_dssp             TEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEE--TTE-E
T ss_pred             CEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEe--CCC-H
Confidence            64322111 2335677765544444556668999998765543 3311   1111245666677677666543  344 4


Q ss_pred             EEEEcCCcceEEEecc------ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCC
Q 015198          200 RIEHFGLNMIKLINAH------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (411)
Q Consensus       200 ~i~~~~~~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (411)
                      ..++........+...      ...|.++...+++..|..|+. +. +..+|..+++.. .+... ....|.++....+|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G-l~~~~~~~~~~~-~~~~l-~~~~i~~i~~d~~g  243 (758)
T 3ott_A          168 CRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY-LFQYFPSTGQIK-QTEAF-HNNSIKSLALDGNG  243 (758)
T ss_dssp             EEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE-EEEEETTTTEEE-EEEEE-EEEEEEEEEECTTC
T ss_pred             hhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC-CeEEcCCCCeEE-eccCC-CCCeEEEEEEcCCC
Confidence            4444443333332211      224788888777776555664 56 889998776543 22210 23368888888888


Q ss_pred             CEEEEEeCCCcEEEEEccccc
Q 015198          274 QWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       274 ~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .+.+ |+.+| +.+++..+++
T Consensus       244 ~lWi-gT~~G-l~~~~~~~~~  262 (758)
T 3ott_A          244 DLLA-GTDNG-LYVYHNDTTP  262 (758)
T ss_dssp             CEEE-EETTE-EEEECCTTSC
T ss_pred             CEEE-EeCCc-eeEEecCCCc
Confidence            7554 45555 8888876543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.26  E-value=0.035  Score=49.72  Aligned_cols=190  Identities=8%  Similarity=-0.060  Sum_probs=104.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC--
Q 015198           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD--  121 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~--  121 (411)
                      .+.+..+.+.+++..++++.++.  ||...................+..+.+.+++.+++.+...     +..+-+|-  
T Consensus       121 ~~~~~~i~~~~~~~~~~~~~~g~--v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G-----~~~~S~d~gG  193 (327)
T 2xbg_A          121 PGSPRLIKALGNGSAEMITNVGA--IYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRG-----SFYSTWEPGQ  193 (327)
T ss_dssp             SSCEEEEEEEETTEEEEEETTCC--EEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTS-----SEEEEECTTC
T ss_pred             CCCeEEEEEECCCCEEEEeCCcc--EEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCC-----cEEEEeCCCC
Confidence            34578888887787777766664  3333333333433222334456777888877777766542     44444442  


Q ss_pred             CCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEecc--CCCcceEEEccCCCceEEEEecCCCC
Q 015198          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETL--ANLRGLCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       122 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (411)
                      .+.+.+ .......+..+.+.+++.+++  .+|.+++.+...++.-..+...  ........+.+.+++.++++ | .+|
T Consensus       194 ~tW~~~-~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g-~~g  270 (327)
T 2xbg_A          194 TAWEPH-NRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA-G-GAG  270 (327)
T ss_dssp             SSCEEE-ECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE-E-STT
T ss_pred             CceeEC-CCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE-e-CCC
Confidence            222222 112456788888988887666  5677777643324332222211  11123455556556666654 4 467


Q ss_pred             eEEEEEcCCcceEEEec---cccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          198 QVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       198 ~i~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                      .|..-...++.-..+..   ....+..+.|.+++. +++++.+|. |.-++
T Consensus       271 ~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~-i~~~~  319 (327)
T 2xbg_A          271 ALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGI-LLRYV  319 (327)
T ss_dssp             CEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTE-EEEEC
T ss_pred             eEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCce-EEEEc
Confidence            77543222333333321   245678898875554 666677888 77665

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.25  E-value=0.02  Score=50.76  Aligned_cols=156  Identities=13%  Similarity=0.092  Sum_probs=100.2

Q ss_pred             ceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEE-Eec----cCCCcceEEEcc---CCCceEEEEec---------
Q 015198          135 DVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQ-IET----LANLRGLCCLSH---HSSTSVLACPG---------  193 (411)
Q Consensus       135 ~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~-~~~----~~~~~~~~~~~~---~~~~~~l~~~g---------  193 (411)
                      --.++.|++ ++.+.+   ..+.|..||...+..... +..    .........+.+   ++++.++++.-         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            345678876 455555   579999999875544333 111    111223467777   67777776522         


Q ss_pred             ---CCCCeEEEEEcC----CcceEEEe--ccc-----------cceeEEEecCCCCEEEEEcCC-CeEEEEEECCCCceE
Q 015198          194 ---LQRGQVRIEHFG----LNMIKLIN--AHD-----------SHIACFTLTLDGLLLATASTR-GTLIRIFNTVDGTRL  252 (411)
Q Consensus       194 ---~~dg~i~i~~~~----~~~~~~~~--~~~-----------~~i~~l~~sp~g~~l~s~s~d-g~~I~vwd~~~~~~~  252 (411)
                         +.+..|..++..    ++.+....  ...           .....++..++|+..++++.. +. |...+. .|+.+
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~-I~rV~p-dG~~~  171 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA-IARVSA-DGKTV  171 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE-EEEECT-TSCCE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe-EEEEeC-CCCEE
Confidence               014556666665    55555443  111           247899999999999988888 88 888875 44443


Q ss_pred             EEEeCC----CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          253 QEVRRG----VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       253 ~~~~~~----~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      ..+...    ......+.|+++|+|+.|++....|.|..+|+.+
T Consensus       172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            333211    0122467999999999998887799999999884

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.20  E-value=0.31  Score=51.40  Aligned_cols=234  Identities=12%  Similarity=0.045  Sum_probs=120.7

Q ss_pred             CCCeEEEEEcCC------CCEEEEEe--CCcEEEEecCCCcceEEeecCCC-CEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           44 EIELISVSWNQD------YGCFAAGT--SCGFRIYNCEPFKETFRRDLKSG-GFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        44 ~~~V~~l~~s~~------g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      ...|.|+++.|.      ++++++|.  |++++|+++.+.+......+... ....+.+.......++..+-.|     |
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~d-----G  627 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGD-----G  627 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETT-----S
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCC-----C
Confidence            457999999864      36899998  89999999998776665555221 1112222222344555555554     7


Q ss_pred             eEEEEE--CCCCcEEEEE--e-ecCceeEEEEcCCe--EEEE-EcCeEEEEEcCCceeeEEEeccCCCc-ceEEEccC--
Q 015198          115 KVIIWD--DHQSRCIGEF--A-FRSDVRSVKLSRDR--IVVV-LEHKIYVYSFVDLKLLHQIETLANLR-GLCCLSHH--  183 (411)
Q Consensus       115 ~i~vwd--~~~~~~~~~~--~-~~~~i~~~~~~~~~--~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~--  183 (411)
                      .+.-+.  ..+|+....-  . ...++.-..+...+  ..++ .+....+|.-+ ++.... ......+ ..+.|...  
T Consensus       628 ~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~  705 (1158)
T 3ei3_A          628 ALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGY  705 (1158)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSS
T ss_pred             eEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCcccC
Confidence            775444  4455544332  1 23344333333222  2222 45555555432 222211 1111111 33344332  


Q ss_pred             CCceEEEEecCCCCeEEEEEcC---CcceEEEeccccceeEEEecCCCCEEEEEcC------------------------
Q 015198          184 SSTSVLACPGLQRGQVRIEHFG---LNMIKLINAHDSHIACFTLTLDGLLLATAST------------------------  236 (411)
Q Consensus       184 ~~~~~l~~~g~~dg~i~i~~~~---~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~------------------------  236 (411)
                      +++ ++++   .++.++|-...   .-.++.+. -...+..++++|+.+.++.+..                        
T Consensus       706 ~~g-~v~~---~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (1158)
T 3ei3_A          706 PDS-LALA---NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS  780 (1158)
T ss_dssp             TTE-EEEE---CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE
T ss_pred             CCc-EEEE---cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh
Confidence            333 3333   24557773332   11222222 2345667777776664433221                        


Q ss_pred             -------------------------CCeEEEEEECCCCceEEEEeCCCCCcceEEEE---eCCC-CCEEEEEe-------
Q 015198          237 -------------------------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA---LSPN-VQWLAVAS-------  280 (411)
Q Consensus       237 -------------------------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~---~spd-g~~l~s~s-------  280 (411)
                                               -+. |++.|-.+.+.+..+.-... ..+.+++   |..+ ..+|++|+       
T Consensus       781 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~-i~lidp~t~~~i~~~~l~~n-E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e  858 (1158)
T 3ei3_A          781 SSVSSSKLFSSSTAPHETSFGEEVEVHN-LLIIDQHTFEVLHAHQFLQN-EYALSLVSCKLGKDPNTYFIVGTAMVYPEE  858 (1158)
T ss_dssp             EEECCCCCC----------CCCEEEEEE-EEEEETTTCCEEEEEECCTT-EEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred             hcccccccccccccCchhhcCCceeeEE-EEEEeCCCCeEEEEEeCCCC-cceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence                                     123 78888888887777665322 3344443   4333 46888877       


Q ss_pred             ---CCCcEEEEEcc
Q 015198          281 ---DKGTVHIFSLR  291 (411)
Q Consensus       281 ---~dg~I~vwd~~  291 (411)
                         ..|.|++|++.
T Consensus       859 ~~~~~Gri~vf~v~  872 (1158)
T 3ei3_A          859 AEPKQGRIVVFQYS  872 (1158)
T ss_dssp             SSCCCEEEEEEEEE
T ss_pred             CCCCceEEEEEEEE
Confidence               34679999887

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.09  E-value=0.036  Score=52.39  Aligned_cols=153  Identities=11%  Similarity=0.102  Sum_probs=88.3

Q ss_pred             eeEEEEcCC--eEEEE-E--cCeEEEEEcCCceeeEEEeccC-CCcceEEEcc-------CCCceEEEEecCCCC----e
Q 015198          136 VRSVKLSRD--RIVVV-L--EHKIYVYSFVDLKLLHQIETLA-NLRGLCCLSH-------HSSTSVLACPGLQRG----Q  198 (411)
Q Consensus       136 i~~~~~~~~--~~~~~-~--dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~l~~~g~~dg----~  198 (411)
                      ...|+|+|.  +.+++ .  .+.|++.|+.+++....+.... .......+++       ++++..|+++...++    .
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            457899983  43433 3  3578889988776665554322 1123455666       666665555443331    2


Q ss_pred             --EEEEEcCC--cce-----EEEeccccceeEEEecC-CCCEEEEEcCCCeEEEEEECC-------CCce----------
Q 015198          199 --VRIEHFGL--NMI-----KLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTV-------DGTR----------  251 (411)
Q Consensus       199 --i~i~~~~~--~~~-----~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~-------~~~~----------  251 (411)
                        |.+.+...  ...     ..+... .....++++| ++.++++-..++. |..+|+.       ++..          
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~-V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQ-VFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTE-EEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCE-EEEEecccccccccCceeeccccccccc
Confidence              33332222  211     233222 2345778899 4556666667788 9999987       5543          


Q ss_pred             -EEE-EeCCCCCcceEEEEeCCCCCEEEEE-eCCCcEEEEEcc
Q 015198          252 -LQE-VRRGVDRAEIYSIALSPNVQWLAVA-SDKGTVHIFSLR  291 (411)
Q Consensus       252 -~~~-~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~I~vwd~~  291 (411)
                       ... +... .......|+|+|+|++|+.+ +....|+.++.+
T Consensus       299 ~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          299 TFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence             222 2221 23456899999999965554 455678886654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.99  E-value=0.19  Score=45.37  Aligned_cols=227  Identities=10%  Similarity=0.041  Sum_probs=113.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeec---CCCCEEEEEEeccCC----eEEEEecCCCCCCCCCeE
Q 015198           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCN----ILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~l~s~~~d~~~~d~~i  116 (411)
                      -..-..++|.|+|+++++-..+.|.+++ +. .......+   .........+.++++    +.++++.........+.|
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            3456799999999866554489998888 32 22111111   123445677888887    444444321100001467


Q ss_pred             EEEECCCCcE-----EE-EEee----cCceeEEEEcCCeEEEEEc----------------CeEEEEEcCCc--------
Q 015198          117 IIWDDHQSRC-----IG-EFAF----RSDVRSVKLSRDRIVVVLE----------------HKIYVYSFVDL--------  162 (411)
Q Consensus       117 ~vwd~~~~~~-----~~-~~~~----~~~i~~~~~~~~~~~~~~d----------------g~i~iwd~~~~--------  162 (411)
                      ..++...+..     +. .+..    ......+.|.|||.+.+.+                +.|.-++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            7777654321     11 1221    1234689999999776632                35555554320        


Q ss_pred             ----eeeEEE-eccCCCcceEEEccCC-CceEEEEecCCCC-------eEEEEEcCC-----------------cceEEE
Q 015198          163 ----KLLHQI-ETLANLRGLCCLSHHS-STSVLACPGLQRG-------QVRIEHFGL-----------------NMIKLI  212 (411)
Q Consensus       163 ----~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~~~g~~dg-------~i~i~~~~~-----------------~~~~~~  212 (411)
                          .....+ .++.+   ...+++++ ++.++++-...+.       .|.+-....                 .++..+
T Consensus       188 ~~~~~~~~i~a~G~rn---p~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          188 GRRGARPEVYSLGHRN---PQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             TCTTSCTTEEEECCSE---ECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             CCCCCCccEEEEcCCC---cccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence                011111 11221   22344454 3444433222222       122211111                 111222


Q ss_pred             eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce------EEEEeCCCCCcceEEEEeCCCCCEEEEEe
Q 015198          213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR------LQEVRRGVDRAEIYSIALSPNVQWLAVAS  280 (411)
Q Consensus       213 ~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~------~~~~~~~~~~~~v~~l~~spdg~~l~s~s  280 (411)
                       .+......++| .+|.++++.-..+. |...++.....      ...+..  ....+..+++.|||.++++..
T Consensus       265 -~~~~ap~G~~~-~~G~l~v~~~~~~~-v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 -PQGFPPGNLAF-FRGDLYVAGLRGQA-LLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             -TTCCCEEEEEE-ETTEEEEEETTTTE-EEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred             -CCCCCCcceEE-ECCEEEEEECCCCE-EEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence             12233456777 56766666656666 88777654331      122222  234789999999998766654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.92  E-value=0.068  Score=48.99  Aligned_cols=139  Identities=14%  Similarity=0.166  Sum_probs=88.4

Q ss_pred             EEEEEcCeEEEEEcCCceeeEEEeccC--CCcceEEEccCCCceEEEEecCCCCeEEEEEcC-C---c---------ceE
Q 015198          146 IVVVLEHKIYVYSFVDLKLLHQIETLA--NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-L---N---------MIK  210 (411)
Q Consensus       146 ~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~---~---------~~~  210 (411)
                      .+++.++.||.-++......+.+....  ....+..+..+++|.+||..|  +..|.|-... +   .         ..+
T Consensus        35 i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~  112 (452)
T 3pbp_A           35 IVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQIF  112 (452)
T ss_dssp             EEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEEE
T ss_pred             EEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--CCeEEEEEecCccccCccccccccccee
Confidence            334488999998887555555665542  111345566777788999876  4466662222 1   0         112


Q ss_pred             EEec------cccceeEEEecCCC---CEEEEEcCCCeEEEEEECCCCc--eEEEEeC-------CCCCcceEEEEeCCC
Q 015198          211 LINA------HDSHIACFTLTLDG---LLLATASTRGTLIRIFNTVDGT--RLQEVRR-------GVDRAEIYSIALSPN  272 (411)
Q Consensus       211 ~~~~------~~~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~-------~~~~~~v~~l~~spd  272 (411)
                      .+.-      ...+|..+.|+|-+   ..|++-..|+. |++||+....  +. .+..       ......|.+++|..+
T Consensus       113 ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~  190 (452)
T 3pbp_A          113 HYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKD  190 (452)
T ss_dssp             EEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTT
T ss_pred             EEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCC
Confidence            2322      25679999999954   58999999999 9999997532  22 3321       112257889999998


Q ss_pred             CCEEEEEe--CCCcEEEE
Q 015198          273 VQWLAVAS--DKGTVHIF  288 (411)
Q Consensus       273 g~~l~s~s--~dg~I~vw  288 (411)
                      +-.|...+  ..|.|+-.
T Consensus       191 ~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          191 GLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SSCEEEEECTTSCEEEEE
T ss_pred             CcEEEEEecCCCCCEEEE
Confidence            88777755  77766543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.91  E-value=0.37  Score=47.25  Aligned_cols=224  Identities=7%  Similarity=-0.046  Sum_probs=123.0

Q ss_pred             EEEEEeCCcEEEEecCCCcce-EEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecC
Q 015198           58 CFAAGTSCGFRIYNCEPFKET-FRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRS  134 (411)
Q Consensus        58 ~la~g~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~  134 (411)
                      +|+.+..+.|+..+++..... ....+ ..-.....+.|++ ++.++++....     +.|+.+++........+. .-.
T Consensus       319 ~Ll~~~~~~i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~v~~~~~~  392 (619)
T 3s94_A          319 LLLLARRTDLRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEV-----RAIRRSFIDGSGSQFVVTAQIA  392 (619)
T ss_dssp             EEEEEESSCEEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSCS
T ss_pred             EEEEEcccceEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCC-----CeEEEEEcCCCccEEEEECCCC
Confidence            566666677887777754321 11212 2223466777876 45555554444     889999976544333333 234


Q ss_pred             ceeEEEEcC-CeE-EEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec-CCCCeEEEEEcCCcce
Q 015198          135 DVRSVKLSR-DRI-VVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMI  209 (411)
Q Consensus       135 ~i~~~~~~~-~~~-~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~i~i~~~~~~~~  209 (411)
                      ....+++.. .+. +++  ..+.|.+.++... ....+... .-.....++.++....|..+- +....|.....++...
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~-~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~  470 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISE-DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR  470 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECT-TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEEC-CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc
Confidence            667888875 333 333  4578999987643 33333221 112344555555433344432 2235666656666554


Q ss_pred             EEEe-ccccceeEEEecCCCCEEEEEcC-CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE-eCCCcEE
Q 015198          210 KLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA-SDKGTVH  286 (411)
Q Consensus       210 ~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~I~  286 (411)
                      ..+. ..-...+.|++++++..|+.+.. .+. |..+++.... ...+... .-.....|+...+  +|+.+ ...+.|.
T Consensus       471 ~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~-I~~~~~dG~~-~~~~~~~-~l~~P~glav~~~--~ly~tD~~~~~I~  545 (619)
T 3s94_A          471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK-IEVMNTDGTG-RRVLVED-KIPHIFGFTLLGD--YVYWTDWQRRSIE  545 (619)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEESSSCC-CEEEEEC-CCCSSCCEEEETT--EEEEECTTSSCEE
T ss_pred             EEEEeCCCCCCeeeEEcccCCEEEEEECCCCE-EEEEecCCCc-eEEEecc-CCCCcEEEEEECC--EEEEeecCCCeEE
Confidence            4443 23456788999987776766654 456 9999985433 3333211 1112345565433  44444 3456688


Q ss_pred             EEEccccc
Q 015198          287 IFSLRVRV  294 (411)
Q Consensus       287 vwd~~~~~  294 (411)
                      ..+..+++
T Consensus       546 ~~~k~~g~  553 (619)
T 3s94_A          546 RVHKRSAE  553 (619)
T ss_dssp             EEESSSCC
T ss_pred             EEEcCCCc
Confidence            77777763

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.83  E-value=0.26  Score=44.45  Aligned_cols=183  Identities=14%  Similarity=0.131  Sum_probs=97.8

Q ss_pred             EeccCCeEEEEecCC-CCC------CCCCeEEEEECCCC-cEEEEEeec--------CceeEEEEcC--Ce--EEEE---
Q 015198           93 MLFRCNILALVGAGD-NSQ------YPPTKVIIWDDHQS-RCIGEFAFR--------SDVRSVKLSR--DR--IVVV---  149 (411)
Q Consensus        93 ~~~~~~~~~l~s~~~-d~~------~~d~~i~vwd~~~~-~~~~~~~~~--------~~i~~~~~~~--~~--~~~~---  149 (411)
                      +...+++.++++++. .|.      ..+|.|.++|..+. .....+...        -....+.+.+  ++  .+++   
T Consensus        55 i~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh  134 (355)
T 3sre_A           55 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  134 (355)
T ss_dssp             EEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             eEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEEC
Confidence            334567777776531 100      03499999998742 122333321        2556677654  33  2333   


Q ss_pred             --EcCeEEEEEcCCc-e---eeEEEeccCCCcceEEEccCCCceEEEEecC----------------CCCeEEEEEcCCc
Q 015198          150 --LEHKIYVYSFVDL-K---LLHQIETLANLRGLCCLSHHSSTSVLACPGL----------------QRGQVRIEHFGLN  207 (411)
Q Consensus       150 --~dg~i~iwd~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----------------~dg~i~i~~~~~~  207 (411)
                        .+..|.+|++... +   .+..+... .....-.+..++++.+.+....                ..|.|+-++.  .
T Consensus       135 ~~~~s~ielf~~d~~~~~~~~~~~~~g~-~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~  211 (355)
T 3sre_A          135 PGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N  211 (355)
T ss_dssp             STTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T
T ss_pred             CCCCCeEEEEEEECCCCEEEEEeccccC-CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C
Confidence              2567788777432 2   22333322 1123344555556665543210                1133333332  2


Q ss_pred             ceEEEeccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCC-Cce--EEEEeCCCCCcceEEEEeCC-CCCEEEEEeCC
Q 015198          208 MIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVD-GTR--LQEVRRGVDRAEIYSIALSP-NVQWLAVASDK  282 (411)
Q Consensus       208 ~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~-~~~--~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~d  282 (411)
                      .+..+...-..-+.++|+||++.|+.+. ..+. |+.|++.. ++.  ...+.   .....-.+++.+ +|++.+++..+
T Consensus       212 ~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~-I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          212 DVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEESC
T ss_pred             eEEEeecCCcccCcceECCCCCEEEEEeCCCCe-EEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecCC
Confidence            3333333344568899999998777665 4566 99999863 332  22332   345678889998 58877766544

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.031  Score=50.07  Aligned_cols=109  Identities=11%  Similarity=0.105  Sum_probs=67.6

Q ss_pred             CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEe---ccCCeEEEEec-CCCCCCCCCeEEEEECCCCcEEEEEe
Q 015198           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEML---FRCNILALVGA-GDNSQYPPTKVIIWDDHQSRCIGEFA  131 (411)
Q Consensus        57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~s~-~~d~~~~d~~i~vwd~~~~~~~~~~~  131 (411)
                      .++++++ ||.|.-+|.++++..+..... .....+...   ...++..++.. ..|     |.|..++..+|.....+.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~d-----G~l~a~~~~~G~~~~~~~   84 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGD-----GNIYYFNAHQGLQKLPLS   84 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTT-----TEEEEEETTTEEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCC-----CEEEEEECCCCcEEeeec
Confidence            3566777 999998898887777776542 111122111   11133344433 455     999999998886665555


Q ss_pred             ecCceeE--EEE------------cCCeEEEE--EcCeEEEEEcCCceeeEEEecc
Q 015198          132 FRSDVRS--VKL------------SRDRIVVV--LEHKIYVYSFVDLKLLHQIETL  171 (411)
Q Consensus       132 ~~~~i~~--~~~------------~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~  171 (411)
                      ....+..  +..            +.++.+++  .++.++..|+.+|+.+..+...
T Consensus        85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           85 IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            2221110  121            25666666  8999999999999999988643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.74  E-value=0.063  Score=56.70  Aligned_cols=230  Identities=14%  Similarity=0.140  Sum_probs=131.7

Q ss_pred             EEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEecc-CCeEEEEecCCCCCCCCCeEEEEECCC-CcEE
Q 015198           50 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQ-SRCI  127 (411)
Q Consensus        50 l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~~~d~~i~vwd~~~-~~~~  127 (411)
                      .-.+|..+.+|.=...++.|+|+++..+.....+   ...++-+.|- ++...+++.        ..|..|++.. ..++
T Consensus        71 AIMnP~~~iiALrag~~lQiFnl~~k~klks~~~---~e~VvfWkWis~~~l~lVT~--------~aVyHW~~~~~s~P~  139 (1630)
T 1xi4_A           71 AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQPV  139 (1630)
T ss_pred             hccCCCcceEEEecCCeEEEeehHHhhhhccccc---CCCceEEEecCCCeeEEEcC--------CeEEEeccCCCCccH
Confidence            3456777777766688999999998665544443   3346666664 566677774        7899999864 2344


Q ss_pred             EEEe-e----cCceeEEEEcCCeEEEE----------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc-eEEEE
Q 015198          128 GEFA-F----RSDVRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST-SVLAC  191 (411)
Q Consensus       128 ~~~~-~----~~~i~~~~~~~~~~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  191 (411)
                      +.+. |    ...|..-..+++.++++          ..|.+.+|..+. +.-+.+.+|........+.-.+.. .++++
T Consensus       140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f  218 (1630)
T 1xi4_A          140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCF  218 (1630)
T ss_pred             HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEE
Confidence            4443 2    56677778888888877          257888998754 333445555443222222211111 12222


Q ss_pred             ec--CCCCeEEEEEcCCc----c------eEEEec---cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEe
Q 015198          192 PG--LQRGQVRIEHFGLN----M------IKLINA---HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       192 ~g--~~dg~i~i~~~~~~----~------~~~~~~---~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (411)
                      +.  ...+.+.|-.....    .      +..+..   ...-..++..++.-..+..-+.-|. |.+||+.+|.++..-+
T Consensus       219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~-~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMNR  297 (1630)
T ss_pred             EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce-EEEEecccchhhhhcc
Confidence            11  12256666333211    1      111111   1222335677777777888888999 9999999998876544


Q ss_pred             CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      -  ....|...+-.....=++.....|.|.--.++..+
T Consensus       298 i--s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          298 I--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             c--cCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence            3  33344444434332334444566666655555544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.58  E-value=0.27  Score=45.13  Aligned_cols=97  Identities=13%  Similarity=0.134  Sum_probs=68.2

Q ss_pred             CCCeEEEEEcC-CcceEEEecc----ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc------------eEEEEeC
Q 015198          195 QRGQVRIEHFG-LNMIKLINAH----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT------------RLQEVRR  257 (411)
Q Consensus       195 ~dg~i~i~~~~-~~~~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~------------~~~~~~~  257 (411)
                      .++.||.-... ....+.+...    -..|..+..+|+|++||..+.. . |.|-.+..+.            ..+.+.-
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~-V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l  116 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-E-IFVMEVPWGYSNVEDVSIQDAFQIFHYSI  116 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-E-EEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-e-EEEEEecCccccCcccccccccceeEEEc
Confidence            35778874433 4445555543    2368889999999999998755 5 8898887331            1223332


Q ss_pred             CC----CCcceEEEEeCCC---CCEEEEEeCCCcEEEEEcccc
Q 015198          258 GV----DRAEIYSIALSPN---VQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       258 ~~----~~~~v~~l~~spd---g~~l~s~s~dg~I~vwd~~~~  293 (411)
                      +.    ...+|..+.|+|-   +..|++-..|+.|++||+...
T Consensus       117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence            11    2457999999994   458999999999999999983

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.50  E-value=0.27  Score=43.99  Aligned_cols=150  Identities=20%  Similarity=0.288  Sum_probs=90.4

Q ss_pred             eEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCC----CC---EEEEEcC---CCeEEEEEECC--CCceEEE
Q 015198          187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLD----GL---LLATAST---RGTLIRIFNTV--DGTRLQE  254 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~----g~---~l~s~s~---dg~~I~vwd~~--~~~~~~~  254 (411)
                      ..++.+ ...+-+.+++.+++.++.+..  +.++.+.+-|+    |+   ++++...   ++. |.+|++.  +++ +..
T Consensus        41 s~ii~t-~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~-l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           41 SKLITT-NKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNT-IEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             CEEEEE-ETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCE-EEEEEECTTTCC-EEE
T ss_pred             cEEEEE-cCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCe-EEEEEECCCCCc-eee
Confidence            344433 356789999999999888764  55666666553    22   2333333   466 9999773  443 444


Q ss_pred             EeCC-----CCCcceEEEEe--CCC-CC-EEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCC
Q 015198          255 VRRG-----VDRAEIYSIAL--SPN-VQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISP  325 (411)
Q Consensus       255 ~~~~-----~~~~~v~~l~~--spd-g~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (411)
                      +...     .....+..+++  +|. ++ ++++...+|.+..|++.......                            
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~----------------------------  167 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY----------------------------  167 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC----------------------------
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc----------------------------
Confidence            4221     11145677887  774 44 67888889999999996543221                            


Q ss_pred             CCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEcc-CCEEEEEEeCCcEEEEEEecCC
Q 015198          326 STGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS-QNTVVIVSMDGSFYRCSFDPVH  391 (411)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~  391 (411)
                                           -..+.+.+|+++..... |+..+ .++|+++-++--|+.|..+++.
T Consensus       168 ---------------------~~~~lVR~f~lgsq~Eg-cvvDd~~g~Lyv~eEd~GIw~~da~p~~  212 (355)
T 3amr_A          168 ---------------------ISGKKVRAFKMNSQTEG-MAADDEYGRLYIAEEDEAIWKFSAEPDG  212 (355)
T ss_dssp             ---------------------EEEEEEEEEECSSCEEE-EEEETTTTEEEEEETTTEEEEEECSTTS
T ss_pred             ---------------------ccceEEEEecCCCCcce-EEEcCCCCeEEEecccceEEEEeCCcCC
Confidence                                 00122457888875554 45554 4888888888544444443544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.48  E-value=1.1  Score=47.24  Aligned_cols=167  Identities=9%  Similarity=0.044  Sum_probs=99.4

Q ss_pred             CCCeEEEEECCCCcEEEE--EeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEec-cCCCcceEEEccCCCce
Q 015198          112 PPTKVIIWDDHQSRCIGE--FAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTS  187 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  187 (411)
                      ..|.|.++++..++....  ...++.+++++--.. ++++ ...+|++|++...+.++ ... ....+....+...+  .
T Consensus       862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~--~  937 (1158)
T 3ei3_A          862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNG-KLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKG--D  937 (1158)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETT-EEEEEETTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEET--T
T ss_pred             CceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCC-EEEEEcCCEEEEEECCCCceEE-EEeeccccEEEEEEeccC--C
Confidence            458999999875543322  236889999986554 5555 89999999997665444 211 11112233343322  3


Q ss_pred             EEEEecCCCCeEEE--EEcCCcceEEEec--cccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC-------ce---EE
Q 015198          188 VLACPGLQRGQVRI--EHFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-------TR---LQ  253 (411)
Q Consensus       188 ~l~~~g~~dg~i~i--~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-------~~---~~  253 (411)
                      ++++ |..-..|.+  |......+..+..  +...++++.|-.++ .++.+..+|+ |.++.....       +.   ..
T Consensus       938 ~I~v-gD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gN-l~vl~~~~~~~~~~~~~~L~~~~ 1014 (1158)
T 3ei3_A          938 FILV-GDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFN-LFVCQKDSAATTDEERQHLQEVG 1014 (1158)
T ss_dssp             EEEE-EESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSE-EEEEEECTTCCSTTGGGBEEEEE
T ss_pred             EEEE-EEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCc-EEEEecCCCCCCccccceeeeEE
Confidence            4544 444445555  6555555555543  45667888876554 6777899999 998876431       22   22


Q ss_pred             EEeCCCCCcceEEEE---eCCC---------CCEEEEEeCCCcEEEE
Q 015198          254 EVRRGVDRAEIYSIA---LSPN---------VQWLAVASDKGTVHIF  288 (411)
Q Consensus       254 ~~~~~~~~~~v~~l~---~spd---------g~~l~s~s~dg~I~vw  288 (411)
                      .|..   ...|+++.   +.+.         ...++.++.+|.|.+.
T Consensus      1015 ~fhl---G~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A         1015 LFHL---GEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp             EEEC---SSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred             EEeC---CCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence            3332   23566665   3332         2347788899988866

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.40  E-value=0.52  Score=42.49  Aligned_cols=202  Identities=8%  Similarity=0.078  Sum_probs=104.7

Q ss_pred             CeEEEEEcCCCCEEEEE-------------eCCcEEEEecCCC-cceEEeecCC-----CCEEEEEEeccC----CeEEE
Q 015198           46 ELISVSWNQDYGCFAAG-------------TSCGFRIYNCEPF-KETFRRDLKS-----GGFRIVEMLFRC----NILAL  102 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g-------------~dg~i~iw~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~----~~~~l  102 (411)
                      ..-.+.+.|+|..++++             .+|.|.++|.++. .......+.+     .......+.+..    ...++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34566678888776665             3788999998732 1222222212     122333333322    22344


Q ss_pred             EecCCCCCCCCCeEEEEECCCC-cEE---EEEee--cCceeEEEEcCCeEEEE-Ec-------------------CeEEE
Q 015198          103 VGAGDNSQYPPTKVIIWDDHQS-RCI---GEFAF--RSDVRSVKLSRDRIVVV-LE-------------------HKIYV  156 (411)
Q Consensus       103 ~s~~~d~~~~d~~i~vwd~~~~-~~~---~~~~~--~~~i~~~~~~~~~~~~~-~d-------------------g~i~i  156 (411)
                      +.....   ....|.+|++..+ ...   ..+.+  -...+.+.+.++|.+.+ .+                   +.|+.
T Consensus       131 Vvnh~~---~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          131 VVNHPG---SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEECST---TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEECCC---CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            442221   1277888775543 222   22222  24578899999988765 21                   34555


Q ss_pred             EEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--cc--eEEEeccccceeEEEecC-CCCEE
Q 015198          157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NM--IKLINAHDSHIACFTLTL-DGLLL  231 (411)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~--~~~~~~~~~~i~~l~~sp-~g~~l  231 (411)
                      +|.  ++.......- .  ....++++++++.|.++-+..+.|..++...  ..  .+.+ ...+..-.+++.+ +|++.
T Consensus       208 ~d~--~~~~~~~~~l-~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          208 YSP--NDVRVVAEGF-D--FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             ECT--TCCEEEEEEE-S--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEE
T ss_pred             EEC--CeEEEeecCC-c--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEE
Confidence            554  3322222221 1  2334555666666666555678888866542  21  2233 2245667889999 59877


Q ss_pred             EEEcCCCeEEEEEECC--CCceEEEEe
Q 015198          232 ATASTRGTLIRIFNTV--DGTRLQEVR  256 (411)
Q Consensus       232 ~s~s~dg~~I~vwd~~--~~~~~~~~~  256 (411)
                      +++..++..|..|+..  .+..+..+.
T Consensus       282 va~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          282 VGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             EEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             EEecCCceEEEEECCCCCCCCEEEEEE
Confidence            7665443214444433  244444444

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.36  E-value=0.55  Score=42.40  Aligned_cols=229  Identities=11%  Similarity=0.013  Sum_probs=116.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeec---CCCCEEEEEEeccCC----eEEEEecCC--CCCCCCC
Q 015198           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCN----ILALVGAGD--NSQYPPT  114 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~l~s~~~--d~~~~d~  114 (411)
                      -.....++|.|+|+++++-.++.|++++.+. . .....+   .........+.++|+    +.++++...  .......
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLISPSG-K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEECSSC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEeCCC-c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            3457899999999865554489998887432 2 111111   123345677888876    555554321  0000003


Q ss_pred             eEEEEECCCC--c-----EE-EEEe--ecCceeEEEEcCCeEEEEEc----------------CeEEEEEcCCcee----
Q 015198          115 KVIIWDDHQS--R-----CI-GEFA--FRSDVRSVKLSRDRIVVVLE----------------HKIYVYSFVDLKL----  164 (411)
Q Consensus       115 ~i~vwd~~~~--~-----~~-~~~~--~~~~i~~~~~~~~~~~~~~d----------------g~i~iwd~~~~~~----  164 (411)
                      .|..|+...+  .     .+ ..+.  .......+.|.||+.+.+..                +.|.-++.. ++.    
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~n  184 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADN  184 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCC
Confidence            5666765543  1     11 1122  11234679999999877621                355555543 220    


Q ss_pred             ----eEEE-eccCCCcceEEEccCC-CceEEEEecCCCC--eEEEEEcCC-----------------cceEEEeccccce
Q 015198          165 ----LHQI-ETLANLRGLCCLSHHS-STSVLACPGLQRG--QVRIEHFGL-----------------NMIKLINAHDSHI  219 (411)
Q Consensus       165 ----~~~~-~~~~~~~~~~~~~~~~-~~~~l~~~g~~dg--~i~i~~~~~-----------------~~~~~~~~~~~~i  219 (411)
                          ...+ .++.+   ...+++++ ++.++++-...+.  .|.+-....                 .++..+.......
T Consensus       185 pf~~~~i~a~G~rn---p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap  261 (354)
T 3a9g_A          185 PFPNSPIWSYGHRN---PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP  261 (354)
T ss_dssp             SSTTCCEEEECCSC---CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred             CCCCCcEEEEccCC---cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence                1111 22222   22344555 3444433222222  122211100                 1112221122346


Q ss_pred             eEEEec-------CCCCEEEEEcCCCeEEEEEECCCC-ceE--EEEeCCCCCcceEEEEeCCCCCEEEEEe
Q 015198          220 ACFTLT-------LDGLLLATASTRGTLIRIFNTVDG-TRL--QEVRRGVDRAEIYSIALSPNVQWLAVAS  280 (411)
Q Consensus       220 ~~l~~s-------p~g~~l~s~s~dg~~I~vwd~~~~-~~~--~~~~~~~~~~~v~~l~~spdg~~l~s~s  280 (411)
                      ..++|.       .+|.++++.-..+. |...++... +..  ..+... ....+..+++.|||.++++..
T Consensus       262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~-v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          262 SGASFVHGDMFPGLRGWLLIACLRGSM-LAAVNFGDNMEVRKISTFFKN-VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEECCSSSCGGGTTEEEEEETTTTE-EEEEEECGGGCEEEEEEECTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred             cceEEECCCCCcccCCcEEEEEcCCCE-EEEEEECCCCcccceeeeccC-CCCCeeEEEECCCCcEEEEEe
Confidence            678883       56777776666677 888888753 332  233221 235789999999998666654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.20  E-value=1.2  Score=44.72  Aligned_cols=234  Identities=12%  Similarity=0.026  Sum_probs=128.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcc-eE-EeecC-----CCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE-TF-RRDLK-----SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~-~~-~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ..|.++.-..+|.+.+ |+.+.+..++..+... .+ .....     -....+.++....++.+.++. .      +-|.
T Consensus       324 ~~v~~i~~D~~g~lWi-Gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~------~GL~  395 (758)
T 3ott_A          324 NQFYSLFRDSKGFYWF-GGANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-D------GSIN  395 (758)
T ss_dssp             CBEEEEEECTTCCEEE-EETTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-T------TEEE
T ss_pred             ceEEEEEEcCCCCEEE-eeCCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-C------CcHh
Confidence            4688888877776554 4544566666443211 11 11100     112346677767666555543 2      6788


Q ss_pred             EEECCCCcEEEEEe-------ecCceeEEEEcCCeEEEE-E-cCeEEEEEcCCc-----eee---EEEeccC--CCcceE
Q 015198          118 IWDDHQSRCIGEFA-------FRSDVRSVKLSRDRIVVV-L-EHKIYVYSFVDL-----KLL---HQIETLA--NLRGLC  178 (411)
Q Consensus       118 vwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~-~-dg~i~iwd~~~~-----~~~---~~~~~~~--~~~~~~  178 (411)
                      .+|..+++...-..       ....|.++...+++.+.+ . .+.|.++|..+.     +..   ..+....  ....+.
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~  475 (758)
T 3ott_A          396 RYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFIN  475 (758)
T ss_dssp             EEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEE
T ss_pred             hcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceee
Confidence            99987775543221       124578888888877666 4 567889986421     111   1221111  112366


Q ss_pred             EEccCCCceEEEEecCCCCeEEEEEcCCcceEEEecc----ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE
Q 015198          179 CLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (411)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (411)
                      ++..+.++.+.+..|...|..+ ++........+...    ...+.++....+|.+.+. +. +. +..||..+++.. .
T Consensus       476 ~i~~d~~g~lWi~~~t~~Gl~~-~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~-~G-l~~~~~~~~~~~-~  550 (758)
T 3ott_A          476 QIIPDNEGNVWVLLYNNKGIDK-INPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FH-GG-VMRINPKDESQQ-S  550 (758)
T ss_dssp             EEEECTTSCEEEEETTCSSEEE-EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ET-TE-EEEECC--CCCC-B
T ss_pred             eEEEcCCCCEEEEccCCCCcEE-EeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ec-Cc-eEEEecCCCceE-E
Confidence            7777877776653354556444 44444444444211    345778888888876554 44 45 888987665432 1


Q ss_pred             Ee-CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          255 VR-RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       255 ~~-~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      +. .+.....|.++... +|+ |..++..| |..||..+.+
T Consensus       551 ~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~  588 (758)
T 3ott_A          551 ISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMD  588 (758)
T ss_dssp             CCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCC
T ss_pred             ecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCce
Confidence            11 11122457787764 554 55566677 8888877654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.13  E-value=0.61  Score=40.67  Aligned_cols=229  Identities=11%  Similarity=0.034  Sum_probs=107.0

Q ss_pred             CCCEEEEEe-C------CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc--
Q 015198           55 DYGCFAAGT-S------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--  125 (411)
Q Consensus        55 ~g~~la~g~-d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~--  125 (411)
                      ++.+++.|+ .      ..+.+||..+........+...... ..+....+..++++|... ......+.+||+.+++  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~l~v~GG~~~-~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VASVSLHDRIYVIGGYDG-RSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCS-SCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccEEEECCEEEEEcCCCC-CccCceEEEEECCCCCCC
Confidence            344555555 2      3577888776442222112111111 112222344455544321 1123579999988776  


Q ss_pred             -EEEEEe--ecCceeEEEEcCCeEEEE--E-----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198          126 -CIGEFA--FRSDVRSVKLSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (411)
Q Consensus       126 -~~~~~~--~~~~i~~~~~~~~~~~~~--~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (411)
                       -...-.  ....-.++....+..+++  .     ...+.+||+.+.+-...-..........+...  ++.++++ |+.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~  168 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCL-GGY  168 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEE-CCB
T ss_pred             eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEE-CCC
Confidence             333222  111122233333444444  1     24689999877654332222221112222222  3455555 433


Q ss_pred             C-----CeEEEEEcCCcceEEEecc---ccceeEEEecCCCCEEEEEcCC-----CeEEEEEECCCCceEEEEeCC-CCC
Q 015198          196 R-----GQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRRG-VDR  261 (411)
Q Consensus       196 d-----g~i~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~~-~~~  261 (411)
                      +     ..+.+++.....-..+...   ......+.+  ++++++.|+.+     .. +.+||+.+.+-.. +... ...
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W~~-~~~~p~~r  244 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSS-VEAYNIRTDSWTT-VTSMTTPR  244 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEE-ECCCSSCC
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccce-EEEEeCCCCcEEE-CCCCCCcc
Confidence            3     3455566554433333211   111122222  66777777764     45 8999998775432 2211 011


Q ss_pred             cceEEEEeCCCCCEEEEEeCC-----CcEEEEEccccc
Q 015198          262 AEIYSIALSPNVQWLAVASDK-----GTVHIFSLRVRV  294 (411)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~d-----g~I~vwd~~~~~  294 (411)
                      .....+.+  ++++++.|+.+     ..|.+||+++.+
T Consensus       245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          245 CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            12222332  66777777765     357888887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.07  E-value=0.66  Score=40.50  Aligned_cols=228  Identities=14%  Similarity=0.106  Sum_probs=104.8

Q ss_pred             CCEEEEEe-C----CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEE
Q 015198           56 YGCFAAGT-S----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF  130 (411)
Q Consensus        56 g~~la~g~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~  130 (411)
                      +.+++.|+ +    ..+.+||..+........+...... ..+....+..++++|... ......+.+||..+++-...-
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVYMAGLVFAVGGFNG-SLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEESCBCS-SSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEEECCEEEEEeCcCC-CccccceEEECCCCCceeeCC
Confidence            34555565 3    4577888776443222222111111 111222444455544322 112257889998877643332


Q ss_pred             e--ecCceeEEEEcCCeEEEE--Ec-----CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC-----
Q 015198          131 A--FRSDVRSVKLSRDRIVVV--LE-----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR-----  196 (411)
Q Consensus       131 ~--~~~~i~~~~~~~~~~~~~--~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d-----  196 (411)
                      .  ....-.++....+..+++  .+     ..+.+||+.+.+-...-..........+...  ++.++++ |+.+     
T Consensus        94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~~  170 (302)
T 2xn4_A           94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAV-GGYDVASRQ  170 (302)
T ss_dssp             CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCEETTTTE
T ss_pred             CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEE-eCCCCCCCc
Confidence            2  111122333334444444  22     3688899877654322111111111112222  3345555 4332     


Q ss_pred             --CeEEEEEcCCcceEEEec---cccceeEEEecCCCCEEEEEcCC-----CeEEEEEECCCCceEEEEeCCC-CCcceE
Q 015198          197 --GQVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRRGV-DRAEIY  265 (411)
Q Consensus       197 --g~i~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~~~-~~~~v~  265 (411)
                        ..+.+++.....-..+..   .......+.+  ++++++.|+.+     .. +.+||+.+.+-. .+.... ......
T Consensus       171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~-~~~~~~~~r~~~~  246 (302)
T 2xn4_A          171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKS-VEVYDPTTNAWR-QVADMNMCRRNAG  246 (302)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCC-EEEEETTTTEEE-EECCCSSCCBSCE
T ss_pred             cccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccce-EEEEeCCCCCEe-eCCCCCCccccCe
Confidence              235555555433333221   1111122222  66777777754     35 899999876543 222110 111112


Q ss_pred             EEEeCCCCCEEEEEeCCC-----cEEEEEccccc
Q 015198          266 SIALSPNVQWLAVASDKG-----TVHIFSLRVRV  294 (411)
Q Consensus       266 ~l~~spdg~~l~s~s~dg-----~I~vwd~~~~~  294 (411)
                      .+.  .++++++.|+.++     .+.+||+.+.+
T Consensus       247 ~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          247 VCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            222  2667777777553     48999988764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.86  E-value=0.95  Score=40.60  Aligned_cols=229  Identities=7%  Similarity=-0.016  Sum_probs=118.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec----CCCCEEEEEEeccCC----eEEEEe--cCCC
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL----KSGGFRIVEMLFRCN----ILALVG--AGDN  108 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~l~s--~~~d  108 (411)
                      ....-..-+.|+|.|||.++++-. .|.|++++.+.........+    ..+......++++|+    +.+.++  ...+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            344456678999999999888887 89998887654332211111    234556778888874    444443  1222


Q ss_pred             CCCCCCeEEEEECCCC----------cEEE-EEe--ecCceeEEEEcCCeEEEEE----------------cCeEEEEEc
Q 015198          109 SQYPPTKVIIWDDHQS----------RCIG-EFA--FRSDVRSVKLSRDRIVVVL----------------EHKIYVYSF  159 (411)
Q Consensus       109 ~~~~d~~i~vwd~~~~----------~~~~-~~~--~~~~i~~~~~~~~~~~~~~----------------dg~i~iwd~  159 (411)
                           +.|.-|.+..+          +.+. .+.  ..+.-..|.|.||+.+.+.                .|.|.-++.
T Consensus       107 -----~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          107 -----NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             -----EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             -----CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence                 56666665431          1111 122  1234567999999877662                144444444


Q ss_pred             CCce--------eeEEE-eccCCCcceEEEccCCCceEEEEecCCCCeEEEEEc-CC------------------cceEE
Q 015198          160 VDLK--------LLHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GL------------------NMIKL  211 (411)
Q Consensus       160 ~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~------------------~~~~~  211 (411)
                      . ++        ....+ .++.+   ...+++++++.+.+.--..++.-.|... .+                  .++..
T Consensus       182 d-G~ip~~nPf~~~~i~a~G~RN---p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~  257 (347)
T 3das_A          182 D-GEPAPGNPFPGSPVYSYGHRN---VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ  257 (347)
T ss_dssp             T-SSBCTTCSSTTCCEEEBCCSB---CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred             C-CCccCCCCCCCCeEEeeCCCC---cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence            3 22        01122 12322   3344555556555443233332333111 11                  11222


Q ss_pred             EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce---EEEEeCCCCCcceEEEEeCCCCCEEEEEe
Q 015198          212 INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR---LQEVRRGVDRAEIYSIALSPNVQWLAVAS  280 (411)
Q Consensus       212 ~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~s~s  280 (411)
                      +..+......++|. +|.++...-..+. |....+.....   ...+... ....+..|+..|||.++++..
T Consensus       258 ~~~~~~ap~G~~~~-~g~~~~~~l~~~~-l~~v~~~~~~~~~~~e~~l~~-~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          258 WSTDEASPSGIAYA-EGSVWMAGLRGER-LWRIPLKGTAAAADPQAFLEG-EYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             ECTTTCCEEEEEEE-TTEEEEEESTTCS-EEEEEEETTEESSCCEEESTT-TSSCEEEEEEEETTEEEEEEC
T ss_pred             cCCCCCCCcceEEE-cCceeeccccCCE-EEEEEecCCceecceEEeecC-CCCCccEEEECCCCcEEEEEc
Confidence            22222344566775 4555655555556 66666654321   1122221 335788899999987665543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.54  E-value=1.1  Score=39.18  Aligned_cols=231  Identities=12%  Similarity=0.018  Sum_probs=104.3

Q ss_pred             CCCCEEEEEe-----CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCC---CCCCCCCeEEEEECCCCc
Q 015198           54 QDYGCFAAGT-----SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD---NSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        54 ~~g~~la~g~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~~~d~~i~vwd~~~~~  125 (411)
                      -++.+++.|+     -..+.+||..+........+...... ..+....+..++++|..   +.......+.+||+.+++
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            3456666665     24578888775443222112111111 11222244455554431   101112468889987775


Q ss_pred             EEEEEe--ecCceeEEEEcCCeEEEE--E-----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          126 CIGEFA--FRSDVRSVKLSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       126 ~~~~~~--~~~~i~~~~~~~~~~~~~--~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      -...-.  ....-.++....+..+++  .     -..+.+||+.+.+-...-..........+...  ++.++++ |+.+
T Consensus       102 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~  178 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAV-GGFD  178 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE-CCBC
T ss_pred             EeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEE-eCCC
Confidence            433211  111112233333444444  1     24688899877643322111111111122222  3345555 4333


Q ss_pred             -----CeEEEEEcCCcceEEEec---cccceeEEEecCCCCEEEEEcCC-----CeEEEEEECCCCceEEEEeCC-CCCc
Q 015198          197 -----GQVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRRG-VDRA  262 (411)
Q Consensus       197 -----g~i~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~~-~~~~  262 (411)
                           ..+.+++.....-..+..   .......+.+  ++++++.|+.+     .. +.+||+.+.+-.. +... ....
T Consensus       179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W~~-~~~~p~~r~  254 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNS-VERYDVETETWTF-VAPMKHRRS  254 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEE-CCCCSSCCB
T ss_pred             CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccce-EEEEeCCCCcEEE-CCCCCCCcc
Confidence                 345555554433222211   1111222223  66777777654     45 8999988765332 2111 0111


Q ss_pred             ceEEEEeCCCCCEEEEEeCC-----CcEEEEEccccc
Q 015198          263 EIYSIALSPNVQWLAVASDK-----GTVHIFSLRVRV  294 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~d-----g~I~vwd~~~~~  294 (411)
                      ....+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       255 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          255 ALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            1222222  56777777654     357888887654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.46  E-value=1.2  Score=39.08  Aligned_cols=125  Identities=7%  Similarity=-0.068  Sum_probs=70.6

Q ss_pred             CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec---CCCCeEEEEEcCCcceEEEeccccceeEEEecCCC
Q 015198          152 HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG---LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDG  228 (411)
Q Consensus       152 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g  228 (411)
                      ..|+..++...+.. .+...    ....+++.  +..|+++.   .....|+.-+.++.....+..+..    .++++++
T Consensus        88 ~~Iy~i~~dg~~~~-~l~~~----~~~~~s~~--g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g  156 (302)
T 3s25_A           88 NSLCRIKRNGHGST-VLDPD----PCIYASLI--GNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSD  156 (302)
T ss_dssp             EEEEEEETTSCCCE-EEECS----CEEEEEEE--TTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEET
T ss_pred             CeEEEEeCCCCcce-EeecC----CccEEEEe--CCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEEC
Confidence            46777777655432 23221    12244443  44566543   234455555666666666665543    4567888


Q ss_pred             CEEEEEcC-CCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCC--cEEEEEccccc
Q 015198          229 LLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG--TVHIFSLRVRV  294 (411)
Q Consensus       229 ~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~I~vwd~~~~~  294 (411)
                      +.|+-.+. ... |.+.++..+.....+..     ... ..+.|++.+|+-....+  .|..-+++...
T Consensus       157 ~~iy~t~~g~~~-Iy~~~l~g~~~~~l~~~-----~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          157 RYFYYNNPKNGQ-LYRYDTASQSEALFYDC-----NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             TEEEEECTTTCC-EEEEETTTTEEEEEECS-----CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             CEEEEEeCCCce-EEEEECCCCCEEEEeCC-----Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            88876655 566 88888866554433332     122 23569999888665443  45555555544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.45  E-value=1.2  Score=38.90  Aligned_cols=227  Identities=9%  Similarity=0.042  Sum_probs=106.4

Q ss_pred             CEEEEEe---CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--
Q 015198           57 GCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--  131 (411)
Q Consensus        57 ~~la~g~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--  131 (411)
                      .+++.|+   ...+.+||..+........+...... ..+....+..++++|..  ......+.+||+.+++-...-.  
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD-AACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS-CEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce-eEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCCC
Confidence            3555666   35678888776443222222111111 11122244444454432  2223688999988876543322  


Q ss_pred             ecCceeEEEEcCCeEEEE--Ec------CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC--------
Q 015198          132 FRSDVRSVKLSRDRIVVV--LE------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ--------  195 (411)
Q Consensus       132 ~~~~i~~~~~~~~~~~~~--~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--------  195 (411)
                      ....-.++....+..+++  .+      ..+.+||+.+.+-...-..........+...  ++.++++.|..        
T Consensus        90 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           90 TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEE
T ss_pred             ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccc
Confidence            111112233334444444  22      4588999887654322111111111122222  33455553321        


Q ss_pred             CCeEEEEEcCCcceEEEecc---ccceeEEEecCCCCEEEEEcCC-----CeEEEEEECCCCceEEEEeC-CCCCcceEE
Q 015198          196 RGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRR-GVDRAEIYS  266 (411)
Q Consensus       196 dg~i~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~-~~~~~~v~~  266 (411)
                      -..+.+++.....-..+...   ...-..+.+  ++++++.|+.+     .. +.+||+.+.+-. .+.. .........
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~W~-~~~~~p~~r~~~~~  243 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDN-VEYYDIKLNEWK-MVSPMPWKGVTVKC  243 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCC-EEEEETTTTEEE-ECCCCSCCBSCCEE
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCce-EEEeeCCCCcEE-ECCCCCCCccceeE
Confidence            23355566555443333221   111122222  66777777653     35 889998876532 2211 101112233


Q ss_pred             EEeCCCCCEEEEEeCC-----CcEEEEEccccc
Q 015198          267 IALSPNVQWLAVASDK-----GTVHIFSLRVRV  294 (411)
Q Consensus       267 l~~spdg~~l~s~s~d-----g~I~vwd~~~~~  294 (411)
                      +.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       244 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          244 AAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            333  66777888754     458888887754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.44  E-value=0.28  Score=43.83  Aligned_cols=112  Identities=13%  Similarity=0.133  Sum_probs=64.6

Q ss_pred             eEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEc-c--CCCceEEEEecCCCCeEEEEEcCCc-ceEEEec----
Q 015198          145 RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS-H--HSSTSVLACPGLQRGQVRIEHFGLN-MIKLINA----  214 (411)
Q Consensus       145 ~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~----  214 (411)
                      +.+++  .||.|+-+|..+|+.+..+.... ....+... +  ..++..++.....||.|+.++.... ....+..    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN-FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGG-SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCc-cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            44444  79999999999999999987651 01112111 1  1122333332246888887664432 2222221    


Q ss_pred             cccceeE---EEe-c----CCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC
Q 015198          215 HDSHIAC---FTL-T----LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (411)
Q Consensus       215 ~~~~i~~---l~~-s----p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (411)
                      ...++..   ..+ .    ..+..+++|+.++. +...|+.+|+.+.++...
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEE-EEEEETTTCCEEEEESTT
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcEEEEEecC
Confidence            1111111   001 0    13457889999999 999999999999998753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.30  E-value=1.6  Score=39.30  Aligned_cols=66  Identities=11%  Similarity=0.090  Sum_probs=42.8

Q ss_pred             EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcE--EEEEe----ecCceeEEEEcCC----eEE-EE-E-c----
Q 015198           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC--IGEFA----FRSDVRSVKLSRD----RIV-VV-L-E----  151 (411)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~--~~~~~----~~~~i~~~~~~~~----~~~-~~-~-d----  151 (411)
                      ....+.+.+++.++++...      +.|.+++  .++.  +..+.    .......|+++|+    +.+ ++ . .    
T Consensus        32 ~P~~ia~~pdG~l~V~e~~------g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERP------GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             CEEEEEECTTSCEEEEETT------TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             CceEEEEcCCCeEEEEeCC------CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            3567888899887777443      8999998  4432  11111    1356789999998    444 33 2 2    


Q ss_pred             -CeEEEEEcCCc
Q 015198          152 -HKIYVYSFVDL  162 (411)
Q Consensus       152 -g~i~iwd~~~~  162 (411)
                       +.|..|+...+
T Consensus       104 ~~~v~r~~~~~~  115 (352)
T 2ism_A          104 RNQVVRLRHLGE  115 (352)
T ss_dssp             EEEEEEEEECSS
T ss_pred             ccEEEEEEeCCC
Confidence             67888887643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.02  E-value=1.9  Score=38.76  Aligned_cols=239  Identities=7%  Similarity=0.008  Sum_probs=118.5

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCcEEEEecCCCcce-EE-e--ecCCCCEEEEEEeccCC----eEEEEecCCCCCC--CC
Q 015198           45 IELISVSWNQDYG-CFAAGTSCGFRIYNCEPFKET-FR-R--DLKSGGFRIVEMLFRCN----ILALVGAGDNSQY--PP  113 (411)
Q Consensus        45 ~~V~~l~~s~~g~-~la~g~dg~i~iw~~~~~~~~-~~-~--~~~~~~~~~~~~~~~~~----~~~l~s~~~d~~~--~d  113 (411)
                      .....|+|.|+|+ ++++-..|.|++++.+..... +. .  ...........+.++|+    +.++++.......  ..
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            3468999999999 555444899988875421110 00 0  01122344577888873    5544442210000  01


Q ss_pred             CeEEEEECCCC--c--EEEE-Ee-ec------CceeEEEEcCCeEEEEE--c--------------CeEEEEEcCCc---
Q 015198          114 TKVIIWDDHQS--R--CIGE-FA-FR------SDVRSVKLSRDRIVVVL--E--------------HKIYVYSFVDL---  162 (411)
Q Consensus       114 ~~i~vwd~~~~--~--~~~~-~~-~~------~~i~~~~~~~~~~~~~~--d--------------g~i~iwd~~~~---  162 (411)
                      ..|..+++..+  +  .... +. ..      .....|.|.||+.+.+.  |              +.|.-++....   
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35666665433  1  1111 11 11      22457999999977762  2              45666665421   


Q ss_pred             ---------eeeEEEe-ccCCCcceEEEccCC-CceEEEEecCCCCeEEEEEcC-C------------------------
Q 015198          163 ---------KLLHQIE-TLANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFG-L------------------------  206 (411)
Q Consensus       163 ---------~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~~g~~dg~i~i~~~~-~------------------------  206 (411)
                               .....+. ++.   ....+++++ .+.+.++--..++.=.|.... +                        
T Consensus       178 ~npf~~~~~~~~~i~a~G~r---np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGIR---NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECCS---EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCcCCCCCCccEEEEcCc---CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence                     0111221 222   344555555 444444322222111221110 0                        


Q ss_pred             -------cceEEEeccccceeEEEecC-------CCCEEEEEcCCCeEEEEEECCCCceEEE--EeCCCCCcceEEEEeC
Q 015198          207 -------NMIKLINAHDSHIACFTLTL-------DGLLLATASTRGTLIRIFNTVDGTRLQE--VRRGVDRAEIYSIALS  270 (411)
Q Consensus       207 -------~~~~~~~~~~~~i~~l~~sp-------~g~~l~s~s~dg~~I~vwd~~~~~~~~~--~~~~~~~~~v~~l~~s  270 (411)
                             .++..+. +......++|..       +|.++++.-..+. |...++..++....  +... ....+..+++.
T Consensus       255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~~~-~~~rp~~v~~~  331 (353)
T 2g8s_A          255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKD-VIVMSVNGDKVTEDGRILTD-RGQRIRDVRTG  331 (353)
T ss_dssp             SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEESGG-GCCCEEEEEEC
T ss_pred             CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCE-EEEEEeCCCeEeeeEEcccC-CCCceeEEEEC
Confidence                   0111122 223456677753       4667776666677 88888876544322  2111 12478999999


Q ss_pred             CCCCEEEEEe-CCCcEEEEEcc
Q 015198          271 PNVQWLAVAS-DKGTVHIFSLR  291 (411)
Q Consensus       271 pdg~~l~s~s-~dg~I~vwd~~  291 (411)
                      |||.++++.. .+|  +||.+.
T Consensus       332 pdG~lyv~td~~~g--~I~ri~  351 (353)
T 2g8s_A          332 PDGYLYVLTDESSG--ELLKVS  351 (353)
T ss_dssp             TTSCEEEEECSTTE--EEEEEE
T ss_pred             CCCcEEEEEeCCCC--EEEEEe
Confidence            9998665433 344  556553

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.69  E-value=2.1  Score=37.60  Aligned_cols=158  Identities=8%  Similarity=-0.062  Sum_probs=83.6

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E---c--CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L---E--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~---d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                      ..|+..++..++.......  ..  ..+++++..+.  .   +  ..|+..++.. .....+..+..      ..+++++
T Consensus        88 ~~Iy~i~~dg~~~~~l~~~--~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~------~~~~~~g  156 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLDPD--PC--IYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL------FTCNTSD  156 (302)
T ss_dssp             EEEEEEETTSCCCEEEECS--CE--EEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC------CCSEEET
T ss_pred             CeEEEEeCCCCcceEeecC--Cc--cEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc------eEeeEEC
Confidence            6788888776653332222  22  24455555554  3   2  3466666553 33334433321      2234455


Q ss_pred             eEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC--CeEEEEEECCCCceEEEEeCCCCCcce
Q 015198          187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR--GTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d--g~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (411)
                      ..|+.+......|..-...+...+.+..  +... ..+.|++.+|+-....  .. |..-++.... ...+..  .  .+
T Consensus       157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~-I~~~~ldG~~-~~~Lt~--~--~~  227 (302)
T 3s25_A          157 RYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNA-IVHVNINNPN-PVVLTE--A--NI  227 (302)
T ss_dssp             TEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTE-EEEECSSSCC-CEECSC--S--CE
T ss_pred             CEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcE-EEEEECCCCC-eEEEeC--C--Cc
Confidence            5677765445677776666655444432  2222 3356999888766543  35 7777775544 334432  1  23


Q ss_pred             EEEEeCCCCCEEEEEeC--CCcEEEEEcccc
Q 015198          265 YSIALSPNVQWLAVASD--KGTVHIFSLRVR  293 (411)
Q Consensus       265 ~~l~~spdg~~l~s~s~--dg~I~vwd~~~~  293 (411)
                        ..|+|++.+|+-+..  .+.|..-+++..
T Consensus       228 --~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          228 --EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             --EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             --ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence              347788888876643  344555555443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.94  E-value=2.3  Score=35.25  Aligned_cols=148  Identities=12%  Similarity=0.016  Sum_probs=86.5

Q ss_pred             CceeEEEEcCCeEEEE-EcCeEEEEEcCCcee------eEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-
Q 015198          134 SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKL------LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-  205 (411)
Q Consensus       134 ~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-  205 (411)
                      ..+..++|+|++.+.+ .+|.++-.+..+.+.      -..+-. ..-....++.+++++.+.++   .||.|+-++.. 
T Consensus        41 ~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~-~Gw~~F~a~~fD~~G~LYav---~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGN-GGWNQFQFLFFDPNGYLYAV---SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEEC-SCGGGCSEEEECTTSCEEEE---ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEecc-cccccceEEEECCCCCEEEe---CCCEEEEeCCCc
Confidence            3677999999998777 888887777644211      122211 11112356667777766654   46888664431 


Q ss_pred             -Ccc------eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCc------eEEEEe-CCCCCcceEEEEeCC
Q 015198          206 -LNM------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT------RLQEVR-RGVDRAEIYSIALSP  271 (411)
Q Consensus       206 -~~~------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~------~~~~~~-~~~~~~~v~~l~~sp  271 (411)
                       ...      ...-..--..+..|.|.|+|.+.++.  |+. ++-+...++.      ....+. .  .-.....+.|.+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~-lyr~~~P~~~~~~wl~~~~~~g~~--g~~~yr~l~f~~  191 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ-FYKALPPVSNQDNWLARATKIGQG--GWDTFKFLFFSS  191 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE-EEEECCCSSTTCCHHHHCEEEESS--SGGGEEEEEECT
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc-EEecCCCCCCCcccccccceeccC--CcceEEEEEECC
Confidence             110      11112223567999999999877776  777 6544333221      112222 2  233455677999


Q ss_pred             CCCEEEEEeCCCcEEEEEccccc
Q 015198          272 NVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       272 dg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      ++.+.++.  ++  ++|.....+
T Consensus       192 ~G~l~~v~--~g--~~Y~~~~p~  210 (236)
T 1tl2_A          192 VGTLFGVQ--GG--KFYEDYPPS  210 (236)
T ss_dssp             TSCEEEEE--TT--EEEEESCCC
T ss_pred             CCcEEEEe--CC--eEEecCCcc
Confidence            99877766  77  666665543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.65  E-value=4.6  Score=37.69  Aligned_cols=100  Identities=8%  Similarity=0.053  Sum_probs=55.9

Q ss_pred             EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEee---------cCceeEEEEcC----CeEEEE-E----
Q 015198           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF---------RSDVRSVKLSR----DRIVVV-L----  150 (411)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~---------~~~i~~~~~~~----~~~~~~-~----  150 (411)
                      ....+.|.+++.++++....     +.|++++..+++.......         ...+..|+|+|    ++.+.+ .    
T Consensus        28 ~P~~~a~~pdG~l~V~e~~g-----g~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERAT-----GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CceEEEEcCCCcEEEEEcCC-----CEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence            34578888998888876543     5788888655554322221         34566899998    455444 2    


Q ss_pred             ----------cCeEEEEEcCCc--e-----eeE-EEeccCCCcceEEEccCCCceEEEEecC
Q 015198          151 ----------EHKIYVYSFVDL--K-----LLH-QIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       151 ----------dg~i~iwd~~~~--~-----~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                                ...|.-|++...  +     .+. .+.. ........+.+.+++.+.++.|.
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence                      135666655321  1     111 1211 11123456667777777776664

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.59  E-value=1.7  Score=41.35  Aligned_cols=97  Identities=11%  Similarity=0.064  Sum_probs=66.1

Q ss_pred             eEEEEEcCCCCEEEEEe--CCcEEEEecCCCcc-----------eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           47 LISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE-----------TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        47 V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      ...+..+|||+++++++  +.++.++++++...           ....+. .-........|.+++....+.--|     
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~~G~aYTtlfid-----  398 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDGRGNAYTTLFID-----  398 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTT-----
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECCCCceEeeeeec-----
Confidence            45688899999999888  99999999985322           122222 234567788899999888887766     


Q ss_pred             CeEEEEECCCC----------cEEEEEeecCceeEEEE------cCCeEEEE
Q 015198          114 TKVIIWDDHQS----------RCIGEFAFRSDVRSVKL------SRDRIVVV  149 (411)
Q Consensus       114 ~~i~vwd~~~~----------~~~~~~~~~~~i~~~~~------~~~~~~~~  149 (411)
                      ..|.-|++...          ..+..+...-.+-.+..      .++|++++
T Consensus       399 SqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv  450 (638)
T 3sbq_A          399 SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLV  450 (638)
T ss_dssp             TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEE
T ss_pred             ceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEE
Confidence            99999997542          45555552222333332      46777776

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.28  E-value=0.72  Score=38.29  Aligned_cols=67  Identities=18%  Similarity=0.147  Sum_probs=42.9

Q ss_pred             cceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce------EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR------LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      ..+..++|+|+|.+.++  .+|. ++-.+..++..      -..+-.. .-..-..+.|.|+|.+.++  .||.|+-++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~-Ly~~~~~t~~~~~W~~s~t~IG~~-Gw~~F~a~~fD~~G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDK-IYKGTPPTHDNDNWMGRAKKIGNG-GWNQFQFLFFDPNGYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTE-EEEESCCCSTTCCHHHHCEEEECS-CGGGCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred             ccceeEEECCCccEEEE--eCCe-EEEECCCCCCcccccccccEeccc-ccccceEEEECCCCCEEEe--CCCEEEEeC
Confidence            47789999999997766  6777 77766644211      1122110 1112467899999998777  568666554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.24  E-value=3.8  Score=35.46  Aligned_cols=188  Identities=9%  Similarity=0.012  Sum_probs=89.1

Q ss_pred             CCCEEEEEe-C-----CcEEEEecCCCc---ceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           55 DYGCFAAGT-S-----CGFRIYNCEPFK---ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        55 ~g~~la~g~-d-----g~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      ++++++.|+ +     ..+.+||..+..   ......+....... .+....+..++++ +.+.......+.+||+.+++
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~~~~~lyv~G-G~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATTLGDMIYVSG-GFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEEETTEEEEEC-CBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEEECCEEEEEc-ccCCCcccceEEEEcCCCCe
Confidence            566777776 4     357888887655   32222221111111 1112234444444 43211123579999988876


Q ss_pred             EEEEEe--ecCceeEEEEcCCeEEEE--E-----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          126 CIGEFA--FRSDVRSVKLSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       126 ~~~~~~--~~~~i~~~~~~~~~~~~~--~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      -...-.  ....-.++....+..+++  .     -..+.+||+.+.+-...-..........+...  ++.++++ |+.+
T Consensus       140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~-GG~~  216 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVV-GGFD  216 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCBC
T ss_pred             EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEE-eCCC
Confidence            544322  121222233333444444  1     25688999877654332111111111122222  2345555 4333


Q ss_pred             -----CeEEEEEcCCcceEEEecc---ccceeEEEecCCCCEEEEEcCC-----CeEEEEEECCCCc
Q 015198          197 -----GQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGT  250 (411)
Q Consensus       197 -----g~i~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~  250 (411)
                           ..+.+++.....-..+...   ......+.+  ++++++.|+.+     .. |.+||+.+.+
T Consensus       217 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~  280 (301)
T 2vpj_A          217 GTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSS-IECYDPIIDS  280 (301)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEE-EEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCccccc-EEEEcCCCCe
Confidence                 3566666655443333211   111122222  66777777765     34 7888987764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.24  E-value=3.8  Score=35.55  Aligned_cols=189  Identities=12%  Similarity=0.057  Sum_probs=88.5

Q ss_pred             CCCEEEEEe-C----CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEE
Q 015198           55 DYGCFAAGT-S----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGE  129 (411)
Q Consensus        55 ~g~~la~g~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~  129 (411)
                      ++.+++.|+ +    ..+.+||..+........+....... .+....+..++++|..........+.+||..+++-...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~  133 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK  133 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence            566777776 4    56778887765433322221111111 11122344455544321112236789999888764433


Q ss_pred             Ee--ecCceeEEEEcCCeEEEE--E---------cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          130 FA--FRSDVRSVKLSRDRIVVV--L---------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       130 ~~--~~~~i~~~~~~~~~~~~~--~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      -.  ....-.++....+..+++  .         -..+.+||+.+.+-...-..............  ++.++++ |+.+
T Consensus       134 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~-GG~~  210 (306)
T 3ii7_A          134 PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAV-GGQN  210 (306)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCEE
T ss_pred             CCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEE-eCCC
Confidence            22  111222333334444444  1         34588999877643322111111111122222  3345555 4333


Q ss_pred             -----CeEEEEEcCCcceEEEe---ccccceeEEEecCCCCEEEEEcCC-----CeEEEEEECCCCc
Q 015198          197 -----GQVRIEHFGLNMIKLIN---AHDSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGT  250 (411)
Q Consensus       197 -----g~i~i~~~~~~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~  250 (411)
                           ..+.+++.....-..+.   .......++.+  ++++++.|+.+     .. +.+||+.+.+
T Consensus       211 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~  274 (306)
T 3ii7_A          211 GLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGH-ILEYNTETDK  274 (306)
T ss_dssp             TTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCE-EEEEETTTTE
T ss_pred             CCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeee-EEEEcCCCCe
Confidence                 24555555543322221   11122222333  66777888754     45 8889987764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.21  E-value=4.5  Score=36.28  Aligned_cols=191  Identities=9%  Similarity=0.019  Sum_probs=99.6

Q ss_pred             EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc-EEEEEe----ecCceeEEEEcCC----eEEEE--E----c--
Q 015198           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-CIGEFA----FRSDVRSVKLSRD----RIVVV--L----E--  151 (411)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~-~~~~~~----~~~~i~~~~~~~~----~~~~~--~----d--  151 (411)
                      ....+.+.+++.++++...      +.|++++ .+++ .+..+.    .......|+++|+    +.+.+  .    +  
T Consensus        30 ~P~~ia~~pdG~l~V~e~~------g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVTERP------GRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CEEEEEEEETTEEEEEETT------TEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCeEEEEcCCCeEEEEeCC------CEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            3567778888887777543      8899887 4554 222211    1356789999997    54444  2    2  


Q ss_pred             --CeEEEEEcCCc--e-----ee-EEEeccCCCcceEEEccCCCceEEEEecCC------------CCeEEEEEcCCc--
Q 015198          152 --HKIYVYSFVDL--K-----LL-HQIETLANLRGLCCLSHHSSTSVLACPGLQ------------RGQVRIEHFGLN--  207 (411)
Q Consensus       152 --g~i~iwd~~~~--~-----~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~------------dg~i~i~~~~~~--  207 (411)
                        +.|..|+....  .     .+ ..+.... ......+.+.+++.+.++.|..            .|.|.-.+.+++  
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~-~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAY-IHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCS-SCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCC-CcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence              57778877543  1     11 1122111 0112234555566666655531            234443333333  


Q ss_pred             ------ceEE-EeccccceeEEEecC-CCCEEEEEcCC---CeEEEEEECCCCc------------------eEEEEeCC
Q 015198          208 ------MIKL-INAHDSHIACFTLTL-DGLLLATASTR---GTLIRIFNTVDGT------------------RLQEVRRG  258 (411)
Q Consensus       208 ------~~~~-~~~~~~~i~~l~~sp-~g~~l~s~s~d---g~~I~vwd~~~~~------------------~~~~~~~~  258 (411)
                            .... ..++.. ...++|+| +|+++++-...   .. |.+..  .+.                  .+..+.. 
T Consensus       182 ~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~de-i~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~-  256 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDE-VNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS-  256 (354)
T ss_dssp             TTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCE-EEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT-
T ss_pred             CCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcE-EEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC-
Confidence                  1112 233433 46799999 67755543221   12 33322  221                  1222211 


Q ss_pred             CCCcceEEEEeC-------CCCCEEEEEeCCCcEEEEEcccc
Q 015198          259 VDRAEIYSIALS-------PNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       259 ~~~~~v~~l~~s-------pdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                       .......++|.       .+|.++++.-..+.|...+++..
T Consensus       257 -~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          257 -ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             -CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred             -CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence             12356788884       46766666666677887777653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.67  E-value=5.2  Score=35.59  Aligned_cols=53  Identities=17%  Similarity=0.110  Sum_probs=27.9

Q ss_pred             EEEEECCCCceE--EEEeCCCCCcceEEEEeCCCCCEEEEEeCCC------cEEEEEccccccCC
Q 015198          241 IRIFNTVDGTRL--QEVRRGVDRAEIYSIALSPNVQWLAVASDKG------TVHIFSLRVRVVGE  297 (411)
Q Consensus       241 I~vwd~~~~~~~--~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg------~I~vwd~~~~~~~~  297 (411)
                      +.+||+.+.+-.  ..+..  ....-..+.  .++++++.|+.++      .|.++++++++..+
T Consensus       287 ~~~yd~~~~~W~~~~~~p~--~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          287 TDIHLWHNGKWDKSGELSQ--GRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             CEEEECC---CEEEEECSS--CCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             EEEEecCCCceeeCCCCCC--CcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence            788998776432  22222  112222222  4678888888653      46667888877554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.86  E-value=11  Score=37.39  Aligned_cols=198  Identities=12%  Similarity=0.013  Sum_probs=90.9

Q ss_pred             CCCCEEEEEe-C----CcEEEEecCCCcceEEe-e-----cCCCCEEEEEEecc-CCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           54 QDYGCFAAGT-S----CGFRIYNCEPFKETFRR-D-----LKSGGFRIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        54 ~~g~~la~g~-d----g~i~iw~~~~~~~~~~~-~-----~~~~~~~~~~~~~~-~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      -++.+++.|+ +    ..+.+||..+....... .     +............. .+..++++|.......-..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            5677777777 3    35778887765433222 1     11111112222222 4444455443321112256889998


Q ss_pred             CCCcEEEEEe--ecCceeEEEEcCCeEEEEE-----cCeEEEEEcCCceeeEEEe---ccCCCcceEEEccCCC-ceEEE
Q 015198          122 HQSRCIGEFA--FRSDVRSVKLSRDRIVVVL-----EHKIYVYSFVDLKLLHQIE---TLANLRGLCCLSHHSS-TSVLA  190 (411)
Q Consensus       122 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~-----dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~l~  190 (411)
                      .+++-...-.  ....-.++....++.+++.     ++.+.+||+.+.+-...-.   .........++..+.+ +.+++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            8765433211  1122223333224444442     1279999998765332211   1111111222232322 45555


Q ss_pred             EecCC-C-----CeEEEEEcCCcc------eEEEecc--cc-ceeEEEecCCCCEEEEEcC--------CCeEEEEEECC
Q 015198          191 CPGLQ-R-----GQVRIEHFGLNM------IKLINAH--DS-HIACFTLTLDGLLLATAST--------RGTLIRIFNTV  247 (411)
Q Consensus       191 ~~g~~-d-----g~i~i~~~~~~~------~~~~~~~--~~-~i~~l~~sp~g~~l~s~s~--------dg~~I~vwd~~  247 (411)
                      +.|.. +     ..+.+++.....      -..+...  .. .-.+++...++++++.|+.        ... |.+||+.
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-v~~yd~~  634 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS-IISLDPL  634 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS-EEEEETT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe-EEEEECC
Confidence            54421 2     346666655443      2222211  11 1112233333777777774        345 8999998


Q ss_pred             CCceE
Q 015198          248 DGTRL  252 (411)
Q Consensus       248 ~~~~~  252 (411)
                      +.+-.
T Consensus       635 t~~W~  639 (695)
T 2zwa_A          635 SETLT  639 (695)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            77543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.68  E-value=6.3  Score=34.35  Aligned_cols=227  Identities=15%  Similarity=0.104  Sum_probs=102.3

Q ss_pred             EEEEeCCcEEEEecCCCcceEEeecCC-CCEEEEEEeccCCeEEEEecC-----CCCCCCCCeEEEEECCCCcEEEEEee
Q 015198           59 FAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAG-----DNSQYPPTKVIIWDDHQSRCIGEFAF  132 (411)
Q Consensus        59 la~g~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~-----~d~~~~d~~i~vwd~~~~~~~~~~~~  132 (411)
                      ++.|+ ..+.+||..+.+... ..+.. ......++....+..++++|.     .........+.+||..+++-...-..
T Consensus         8 ~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            33444 678889988755432 22211 112223333445556666652     11000113478889887764322111


Q ss_pred             c--CceeEEEEcCCeEEEE--Ec--------CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC----
Q 015198          133 R--SDVRSVKLSRDRIVVV--LE--------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR----  196 (411)
Q Consensus       133 ~--~~i~~~~~~~~~~~~~--~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d----  196 (411)
                      .  ..-.++....+..+++  .+        ..+.+||+.+.+-...-..........+...  ++.++++.|..+    
T Consensus        86 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~  163 (315)
T 4asc_A           86 PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVIGGKGSDRKC  163 (315)
T ss_dssp             SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCTTSCB
T ss_pred             CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEEeCCCCCCcc
Confidence            1  1111233334444444  21        3588899877643221111111112222222  234555544212    


Q ss_pred             -CeEEEEEcCCcceEEEec---cccceeEEEecCCCCEEEEEcCCCe----EEEEEECCCCceEEEEeCC-CCCcceEEE
Q 015198          197 -GQVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTRGT----LIRIFNTVDGTRLQEVRRG-VDRAEIYSI  267 (411)
Q Consensus       197 -g~i~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~dg~----~I~vwd~~~~~~~~~~~~~-~~~~~v~~l  267 (411)
                       ..+.+++.....-..+..   ......++.+  ++++++.|+.++.    .+.+||+.+.+-.. +... ........+
T Consensus       164 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~  240 (315)
T 4asc_A          164 LNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP-FEAFPQERSSLSLV  240 (315)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEE-ECCCSSCCBSCEEE
T ss_pred             cceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEE-CCCCCCcccceeEE
Confidence             245555554433222221   1111122222  6677777775431    28899987765332 2211 011122223


Q ss_pred             EeCCCCCEEEEEeCCC--------------cEEEEEccccc
Q 015198          268 ALSPNVQWLAVASDKG--------------TVHIFSLRVRV  294 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg--------------~I~vwd~~~~~  294 (411)
                      .+  ++++++.|+.++              .|.+||+++.+
T Consensus       241 ~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          241 SL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            32  567777777532              37788887654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.56  E-value=12  Score=35.67  Aligned_cols=97  Identities=10%  Similarity=0.029  Sum_probs=63.0

Q ss_pred             EccCCCceEEEEecCCCCeEEEEEcCC-------cc-------eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          180 LSHHSSTSVLACPGLQRGQVRIEHFGL-------NM-------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~i~i~~~~~-------~~-------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                      +..+|+|++++++|-.+.++.+.+...       +.       ....+. .-.....+|.++|....+---|.. |.-|+
T Consensus       328 v~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSq-vvkWn  405 (638)
T 3sbq_A          328 CNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQ-VVKWN  405 (638)
T ss_dssp             EEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTE-EEEEE
T ss_pred             eeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecce-EEEEe
Confidence            345667889999898899999976653       11       112222 233457889999966666778998 99999


Q ss_pred             CCCC----------ceEEEEeCCCCCcceEEEEe------CCCCCEEEEEeC
Q 015198          246 TVDG----------TRLQEVRRGVDRAEIYSIAL------SPNVQWLAVASD  281 (411)
Q Consensus       246 ~~~~----------~~~~~~~~~~~~~~v~~l~~------spdg~~l~s~s~  281 (411)
                      +...          ..+..+..+  - .+-.+.-      .+||+||++...
T Consensus       406 i~~a~~~~~g~~~~~v~~k~dv~--Y-qpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          406 MEEAVRAYKGEKVNYIKQKLDVH--Y-QPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             HHHHHHHHTTCCCCCEEEEEECS--S-CEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             ccHHHHHhcCccCCeeeeccccc--c-CCcccccCCCccCCCCccEEEEecc
Confidence            8653          455566653  2 2233333      478888887653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.12  E-value=12  Score=34.85  Aligned_cols=106  Identities=9%  Similarity=0.031  Sum_probs=58.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CcEEEEecCCCcceEEeecC------CCCEEEEEEeccC----CeEEEEecCC-----
Q 015198           44 EIELISVSWNQDYGCFAAGTS-CGFRIYNCEPFKETFRRDLK------SGGFRIVEMLFRC----NILALVGAGD-----  107 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~d-g~i~iw~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~l~s~~~-----  107 (411)
                      -...+.|+|.|+|+++++-.. +.|++++...........+.      ........++++|    ++.+.++...     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345689999999997777665 46887775433322222221      1345567888887    5555554321     


Q ss_pred             -CCC-CCCCeEEEEECCCC--c-----EEEE-Ee--ecCceeEEEEcCCeEEEE
Q 015198          108 -NSQ-YPPTKVIIWDDHQS--R-----CIGE-FA--FRSDVRSVKLSRDRIVVV  149 (411)
Q Consensus       108 -d~~-~~d~~i~vwd~~~~--~-----~~~~-~~--~~~~i~~~~~~~~~~~~~  149 (411)
                       +.. .....|.-+++..+  +     .+.. +.  ..+....|.|.|||.+.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv  159 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYY  159 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEE
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEE
Confidence             000 00135555554322  1     1111 21  124578899999987776

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.97  E-value=16  Score=32.36  Aligned_cols=22  Identities=9%  Similarity=-0.040  Sum_probs=13.6

Q ss_pred             CCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           97 CNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        97 ~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      .+..++++|...     ..+.++|+.+
T Consensus        19 ~~~iyv~GG~~~-----~~~~~~d~~~   40 (357)
T 2uvk_A           19 NDTVYIGLGSAG-----TAWYKLDTQA   40 (357)
T ss_dssp             TTEEEEECGGGT-----TCEEEEETTS
T ss_pred             CCEEEEEeCcCC-----CeEEEEcccc
Confidence            444555555443     6788889764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=86.88  E-value=15  Score=31.95  Aligned_cols=227  Identities=12%  Similarity=0.060  Sum_probs=101.3

Q ss_pred             EEEEEeCCcEEEEecCCCcceEEeecCC-CCEEEEEEeccCCeEEEEecCC-CCC----CCCCeEEEEECCCCcEEEEEe
Q 015198           58 CFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGD-NSQ----YPPTKVIIWDDHQSRCIGEFA  131 (411)
Q Consensus        58 ~la~g~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~-d~~----~~d~~i~vwd~~~~~~~~~~~  131 (411)
                      +++.|+ ..+..||..+.+... ..+.. ......++....+..++++|.. +..    .....+.+||..+++-...-.
T Consensus        18 i~~~GG-~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVND-TAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECS-SEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhccc-cceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            344444 337888887654332 22211 1122233344455566666521 100    011237888987765433211


Q ss_pred             --ecCceeEEEEcCCeEEEE--Ec-------CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC-----
Q 015198          132 --FRSDVRSVKLSRDRIVVV--LE-------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ-----  195 (411)
Q Consensus       132 --~~~~i~~~~~~~~~~~~~--~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-----  195 (411)
                        ....-.++....+..+++  .+       ..+.+||+.+.+-...-..........+...  ++.++++.|..     
T Consensus        96 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~  173 (318)
T 2woz_A           96 LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH--NGMIYCLGGKTDDKKC  173 (318)
T ss_dssp             BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE--TTEEEEECCEESSSCB
T ss_pred             CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE--CCEEEEEcCCCCCCCc
Confidence              111122333334444444  22       3588888877643322111111111112222  34455554421     


Q ss_pred             CCeEEEEEcCCcceEEEecc---ccceeEEEecCCCCEEEEEcCC-----CeEEEEEECCCCceEEEEeCC-CCCcceEE
Q 015198          196 RGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRRG-VDRAEIYS  266 (411)
Q Consensus       196 dg~i~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~~-~~~~~v~~  266 (411)
                      -..+.+++.....-..+...   ......+.  -++++++.|+.+     .. +.+||+.+.+-.. +... ........
T Consensus       174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~-~~~~p~~r~~~~~  249 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSAS-VEAFDLKTNKWEV-MTEFPQERSSISL  249 (318)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEE-EEEEETTTCCEEE-CCCCSSCCBSCEE
T ss_pred             cceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccce-EEEEECCCCeEEE-CCCCCCcccceEE
Confidence            12456666555433333211   11112222  266777777643     24 7889988765332 2111 01111122


Q ss_pred             EEeCCCCCEEEEEeCC--------------CcEEEEEccccc
Q 015198          267 IALSPNVQWLAVASDK--------------GTVHIFSLRVRV  294 (411)
Q Consensus       267 l~~spdg~~l~s~s~d--------------g~I~vwd~~~~~  294 (411)
                      +.  .++++++.|+.+              ..+.+||+.+.+
T Consensus       250 ~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          250 VS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             EE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             EE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            22  256677776643              357888887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=86.53  E-value=15  Score=31.60  Aligned_cols=188  Identities=13%  Similarity=0.075  Sum_probs=86.7

Q ss_pred             CCCEEEEEe-C-----CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEE
Q 015198           55 DYGCFAAGT-S-----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG  128 (411)
Q Consensus        55 ~g~~la~g~-d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~  128 (411)
                      ++.+++.|+ +     ..+.+||..+........+...... ..+....+..++++|... ......+.+||+.+++-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAVLNGLLYAVGGFDG-STGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEEEEECS-SCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEEEECCEEEEEcCCCC-CccCceEEEEeCCCCeEee
Confidence            566777776 4     3477788776443322222111111 111222445555554322 1111468889988776443


Q ss_pred             EEe--ecCceeEEEEcCCeEEEE--E-------cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC-
Q 015198          129 EFA--FRSDVRSVKLSRDRIVVV--L-------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR-  196 (411)
Q Consensus       129 ~~~--~~~~i~~~~~~~~~~~~~--~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d-  196 (411)
                      .-.  ....-.++....+..+++  .       -..+.+||+.+.+-...-..........+...  ++.++++ |+.+ 
T Consensus       139 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~  215 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAV-GGHDG  215 (302)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCBSS
T ss_pred             cCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEE-CCCCC
Confidence            322  111222333334444444  1       24588999877644322111111111122222  3355555 4333 


Q ss_pred             ----CeEEEEEcCCcceEEEecc---ccceeEEEecCCCCEEEEEcCC-----CeEEEEEECCCCc
Q 015198          197 ----GQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGT  250 (411)
Q Consensus       197 ----g~i~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~  250 (411)
                          ..+.+++.....-..+...   ......+.  -++++++.|+.+     .. +.+||+.+.+
T Consensus       216 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~-v~~yd~~~~~  278 (302)
T 2xn4_A          216 PLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLAS-VEYYNPTTDK  278 (302)
T ss_dssp             SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCC-EEEEETTTTE
T ss_pred             CcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCccccc-EEEEcCCCCe
Confidence                2466666555443333221   11111222  266777777754     34 7888887664

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=83.47  E-value=37  Score=33.54  Aligned_cols=178  Identities=7%  Similarity=0.006  Sum_probs=86.1

Q ss_pred             CeEEEEECCCCcEEEEE-e-------ecCceeEEEEc--CCeEEEE--E------cCeEEEEEcCCceeeEEEeccCCCc
Q 015198          114 TKVIIWDDHQSRCIGEF-A-------FRSDVRSVKLS--RDRIVVV--L------EHKIYVYSFVDLKLLHQIETLANLR  175 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~-~-------~~~~i~~~~~~--~~~~~~~--~------dg~i~iwd~~~~~~~~~~~~~~~~~  175 (411)
                      ..+.+||..+++....- .       ....-.++...  .+..+++  .      -+.+.+||+.+.+-...-.......
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~  491 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF  491 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence            56888998877654433 1       11112233333  3444444  1      1358889987754322111111111


Q ss_pred             ceEEEccCCCceEEEEecCCCC-eEEEEEcCCcceEEEec------cccceeEEEecCC-CCEEEEEcC--C-----CeE
Q 015198          176 GLCCLSHHSSTSVLACPGLQRG-QVRIEHFGLNMIKLINA------HDSHIACFTLTLD-GLLLATAST--R-----GTL  240 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg-~i~i~~~~~~~~~~~~~------~~~~i~~l~~sp~-g~~l~s~s~--d-----g~~  240 (411)
                      ...+.... ++.++++.|.... .+.+++.....-..+..      ......++.+..+ +++++.|+.  +     .. 
T Consensus       492 ~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~-  569 (695)
T 2zwa_A          492 RHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK-  569 (695)
T ss_dssp             SCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE-
T ss_pred             cceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc-
Confidence            11222211 4456666442222 46666665544333321      1222233555555 667777765  2     35 


Q ss_pred             EEEEECCCCce-----EEEEeCC--CCCcceEEEEeCCCCCEEEEEeC--------CCcEEEEEccccc
Q 015198          241 IRIFNTVDGTR-----LQEVRRG--VDRAEIYSIALSPNVQWLAVASD--------KGTVHIFSLRVRV  294 (411)
Q Consensus       241 I~vwd~~~~~~-----~~~~~~~--~~~~~v~~l~~spdg~~l~s~s~--------dg~I~vwd~~~~~  294 (411)
                      +.+||+.+.+-     -..+...  ........+.+ .++++++.|+.        ...|.+||+.+.+
T Consensus       570 v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          570 AIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            88999988761     1222110  01112222222 33677777774        3458999988764

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=83.32  E-value=26  Score=31.67  Aligned_cols=164  Identities=8%  Similarity=0.066  Sum_probs=88.7

Q ss_pred             CeEEEEECCCC--cEEEEEee-------cCceeEEEEc---CC----eEEE-E---EcCeEEEEEcCCceeeEEEeccCC
Q 015198          114 TKVIIWDDHQS--RCIGEFAF-------RSDVRSVKLS---RD----RIVV-V---LEHKIYVYSFVDLKLLHQIETLAN  173 (411)
Q Consensus       114 ~~i~vwd~~~~--~~~~~~~~-------~~~i~~~~~~---~~----~~~~-~---~dg~i~iwd~~~~~~~~~~~~~~~  173 (411)
                      -.|.+||+.++  +.++.+..       ...+..+.+.   ++    +.++ +   ....|.++|+.+++.-+.+.....
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~  202 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK  202 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred             ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence            58999999999  99999874       3457788877   22    2222 2   367899999998876655521111


Q ss_pred             C----------------cceEEEccCCC----ceEEEEecCCCCeEE-EE---EcCC---cceEEEeccc---cceeEEE
Q 015198          174 L----------------RGLCCLSHHSS----TSVLACPGLQRGQVR-IE---HFGL---NMIKLINAHD---SHIACFT  223 (411)
Q Consensus       174 ~----------------~~~~~~~~~~~----~~~l~~~g~~dg~i~-i~---~~~~---~~~~~~~~~~---~~i~~l~  223 (411)
                      +                ..+..++.+++    ++.|.+..-....++ |-   ..+.   ..++.+ +..   ..-..++
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~  281 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA  281 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence            1                12223333333    344444322221222 21   0111   112222 222   2333566


Q ss_pred             ec-CCCCEEEEEcCCCeEEEEEECCC-C---ceEEEEeCCCCCcceEEEEeCCCCCEEEEE
Q 015198          224 LT-LDGLLLATASTRGTLIRIFNTVD-G---TRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (411)
Q Consensus       224 ~s-p~g~~l~s~s~dg~~I~vwd~~~-~---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (411)
                      +. .+|.++++--.... |..|+..+ .   +....+.....-..+..+.+..+|.+.+..
T Consensus       282 ~D~~~G~ly~~~~~~~a-I~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          282 YDPKTKVIFFAEANTKQ-VSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             ECTTTCEEEEEESSSSE-EEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             EeCCCCeEEEEeccCCe-EEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            75 67877777777777 99999765 1   222333321122356777777777655544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=82.34  E-value=23  Score=30.48  Aligned_cols=189  Identities=11%  Similarity=0.011  Sum_probs=84.2

Q ss_pred             CCCEEEEEe-C---------CcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 015198           55 DYGCFAAGT-S---------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS  124 (411)
Q Consensus        55 ~g~~la~g~-d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~  124 (411)
                      ++++++.|+ +         ..+.+||..+........+....... .+....+..++++ +.+.......+.+||+.++
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~G-G~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVGVIDGHIYAVG-GSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEEEETTEEEEEC-CEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEEEECCEEEEEc-CCCCCcccccEEEECCCCC
Confidence            566666665 2         45778887654322222121111111 1111234444444 3221111256889998877


Q ss_pred             cEEEEEe--ecCceeEEEEcCCeEEEE--E-----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCC
Q 015198          125 RCIGEFA--FRSDVRSVKLSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (411)
Q Consensus       125 ~~~~~~~--~~~~i~~~~~~~~~~~~~--~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (411)
                      +-...-.  ....-.++....+..+++  .     -..+.+||+.+.+-...-..........+...  ++.++++ |+.
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~  224 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAA-GGY  224 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE-CCB
T ss_pred             eEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEE-eCC
Confidence            5433222  111112233334444444  1     25688999877643321111111111122222  3345555 433


Q ss_pred             C-----CeEEEEEcCCcceEEEec---cccceeEEEecCCCCEEEEEcCC-----CeEEEEEECCCCce
Q 015198          196 R-----GQVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTR  251 (411)
Q Consensus       196 d-----g~i~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~  251 (411)
                      +     ..+.+++.....-..+..   .......+.+  ++++++.|+.+     .. +.+||+.+.+-
T Consensus       225 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W  290 (308)
T 1zgk_A          225 DGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDS-VECYDPDTDTW  290 (308)
T ss_dssp             CSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCE-EEEEETTTTEE
T ss_pred             CCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccce-EEEEcCCCCEE
Confidence            3     346666655443332221   1111122222  66777777654     34 78888877643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=81.36  E-value=29  Score=30.86  Aligned_cols=65  Identities=12%  Similarity=0.086  Sum_probs=39.1

Q ss_pred             EEEEeccCCeE-EEEecCCCCCCCCCeEEEEECCCCcEEEEEe--------ecCceeEEEEcCC----eEEEE---E---
Q 015198           90 IVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--------FRSDVRSVKLSRD----RIVVV---L---  150 (411)
Q Consensus        90 ~~~~~~~~~~~-~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--------~~~~i~~~~~~~~----~~~~~---~---  150 (411)
                      ...+.|.+++. ++++.. .     +.|++++. .++....+.        .......|+++|+    +.+.+   .   
T Consensus        20 P~~i~~~pdG~~l~V~e~-~-----G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~   92 (353)
T 2g8s_A           20 PWALAFLPDNHGMLITLR-G-----GELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD   92 (353)
T ss_dssp             EEEEEECSTTCCEEEEET-T-----TEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred             cEEEEEcCCCCEEEEEeC-C-----ceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence            46778888887 777654 3     89999984 333211111        1345688999995    44444   1   


Q ss_pred             ----cCeEEEEEcCC
Q 015198          151 ----EHKIYVYSFVD  161 (411)
Q Consensus       151 ----dg~i~iwd~~~  161 (411)
                          ...|..|++..
T Consensus        93 ~g~~~~~v~r~~~~~  107 (353)
T 2g8s_A           93 DGKAGTAVGYGRLSD  107 (353)
T ss_dssp             SSCEEEEEEEEEECT
T ss_pred             CCCceeEEEEEEECC
Confidence                23566676643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=81.19  E-value=29  Score=30.85  Aligned_cols=67  Identities=15%  Similarity=0.073  Sum_probs=42.8

Q ss_pred             EEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEE--Ee-----ecCceeEEEEcCC----eEEEE-----EcCe
Q 015198           90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGE--FA-----FRSDVRSVKLSRD----RIVVV-----LEHK  153 (411)
Q Consensus        90 ~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~--~~-----~~~~i~~~~~~~~----~~~~~-----~dg~  153 (411)
                      ...+.|.+++.++++....     |.|++++...++....  +.     .......|+++|+    +.+.+     .++.
T Consensus        34 P~~ia~~pdG~llVter~~-----G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSRDE-----ATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             EEEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             ceEEEEcCCCcEEEEEecC-----CEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            4577788888888876544     8999998665654221  11     2456789999985    44433     2456


Q ss_pred             EEEEEcCC
Q 015198          154 IYVYSFVD  161 (411)
Q Consensus       154 i~iwd~~~  161 (411)
                      |.-|.+..
T Consensus       109 v~R~~~~~  116 (347)
T 3das_A          109 IVRMLYDE  116 (347)
T ss_dssp             EEEEEBCT
T ss_pred             EEEEEeCC
Confidence            66666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	411
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.002

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 22/242 (9%), Positives = 62/242 (25%), Gaps = 8/242 (3%)

Query: 49  SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN 108
           S     D      G                  +   +        L       +  +  +
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161

Query: 109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQI 168
                   +       +  G     S +             L++ +  +   + + L Q 
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221

Query: 169 ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDG 228
           +  + +  L        T      G++   V + H        ++ H+S +        G
Sbjct: 222 DFTSQIFSLGY----CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277

Query: 229 LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288
               +       +  + T  G  + + +     + + S  +S + +++   S      ++
Sbjct: 278 KWFVSTGKDNL-LNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKKATVY 333

Query: 289 SL 290
            +
Sbjct: 334 EV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 14/104 (13%)

Query: 188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV 247
            L  PG+ R   +I             H   +   T++     + T       +++++  
Sbjct: 32  ALIGPGIPRHARQINTLN---------HGEVVCAVTISNPTRHVYTGGKGC--VKVWDIS 80

Query: 248 DGTRLQEVRRGVDRA---EIYSIALSPNVQWLAVASDKGTVHIF 288
                  V +         I S  L P+   L V  +  T+ I+
Sbjct: 81  HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 15/153 (9%), Positives = 45/153 (29%), Gaps = 3/153 (1%)

Query: 136 VRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195
           VR   ++       L    +V   +         +++   G            L      
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226

Query: 196 RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255
           +     +      +  +  HD+ +        G  + + +   T +R+++  +   ++ +
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKTL 285

Query: 256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288
                   + S+       ++   S   TV ++
Sbjct: 286 NAHEHF--VTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 13/141 (9%), Positives = 42/141 (29%), Gaps = 9/141 (6%)

Query: 152 HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL 211
               ++   +           +   +  +    + +  A  G      R+     +   +
Sbjct: 206 ASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNAFAT-GSDDATCRLFDLRADQELM 262

Query: 212 INAHDSH---IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA 268
             +HD+    I   + +  G LL           +++ +   R   +        +  + 
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSCLG 319

Query: 269 LSPNVQWLAVASDKGTVHIFS 289
           ++ +   +A  S    + I++
Sbjct: 320 VTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 4/244 (1%)

Query: 49  SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN 108
           ++ W  D     + +  G ++   + +       +      ++   +  +    V  G  
Sbjct: 60  AMHWGTDSRLLVSASQDG-KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGL 117

Query: 109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQI 168
                   +   +   R   E A  +   S     D   +V        +  D++   Q 
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177

Query: 169 ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLD 227
            T     G       +  + L   G      ++         +    H+S I       +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237

Query: 228 GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI 287
           G   AT S   T  R+F+      L           I S++ S + + L    D    ++
Sbjct: 238 GNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 288 FSLR 291
           +   
Sbjct: 297 WDAL 300

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.2 bits (105), Expect = 7e-06
 Identities = 7/71 (9%), Positives = 22/71 (30%), Gaps = 1/71 (1%)

Query: 219 IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278
           I+C     D   +A        + I+       +Q         ++  +  +P+   +  
Sbjct: 10  ISCHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 279 ASDKGTVHIFS 289
                  ++++
Sbjct: 69  CGTDRNAYVWT 79

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 36/249 (14%), Positives = 72/249 (28%), Gaps = 24/249 (9%)

Query: 49  SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN 108
           +V     +       S    +   +         L      +  + +    +        
Sbjct: 99  TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV------- 151

Query: 109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLH 166
           S      V +WD     C+      ++           VV   L+  I V+       +H
Sbjct: 152 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 211

Query: 167 QIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI----EHFGLNMIKLINAHDSHIACF 222
            +    +             ++L   G     V+I        L  ++  N H S + C 
Sbjct: 212 TLTGHQS----LTSGMELKDNILVS-GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 266

Query: 223 TLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR---GVDRAEIYSIALSPNVQWLAVA 279
               +   + T+S  GT +++++   G  ++ +     G     ++ I  S      AV 
Sbjct: 267 QFNKN--FVITSSDDGT-VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323

Query: 280 SDKGTVHIF 288
           S  GT    
Sbjct: 324 SRNGTEETK 332

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 13/121 (10%), Positives = 29/121 (23%), Gaps = 5/121 (4%)

Query: 175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA 234
           + +   S   S  +                          H   +     T +   + + 
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326

Query: 235 STRGTLIRIFNTVDGTRLQEVRRGVDR----AEIYSIALSPNVQWLAVASDKGTVHIFSL 290
           S     +  ++   G  L  ++   +     A     +L P     A  S      I+  
Sbjct: 327 SKDRG-VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

Query: 291 R 291
           +
Sbjct: 386 K 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 36/273 (13%), Positives = 78/273 (28%), Gaps = 31/273 (11%)

Query: 49  SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-------NILA 101
            V ++ D    A G +   ++Y         R    S   +  E L           I +
Sbjct: 67  CVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 126

Query: 102 LVGAGDNSQY-----PPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYV 156
           +  + D              I   +++   +       D+ S+        +V       
Sbjct: 127 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186

Query: 157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI------- 209
               DL+      TL+   G+  ++           G     VR+       +       
Sbjct: 187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 246

Query: 210 -KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ----------EVRRG 258
            +    H   +     T DG  + + S   + ++++N  +               EV   
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291
             +  + S+A + N +++   S    V  +  +
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 7/84 (8%), Positives = 27/84 (32%), Gaps = 2/84 (2%)

Query: 206 LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-RAEI 264
           + ++++  A   +I+   +     LL   S  G+ + ++      +  ++ + +  +  +
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGS-LTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 265 YSIALSPNVQWLAVASDKGTVHIF 288
                  N              + 
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILK 83

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 12/155 (7%)

Query: 141 LSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVR 200
           LS   +    +  +  +SF  +     I  +        L   S TS      L     R
Sbjct: 196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR 255

Query: 201 IEHFGLNM--IKLINAHDSH---IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255
                ++    ++I   +S     +             A  +G  +  ++     ++ EV
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTR-KVTEV 313

Query: 256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290
           +  +       + LS + + + V  D G ++ F L
Sbjct: 314 KNNL-----TDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 222 FTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD 281
             L L  L   T    G  I + +      ++ +  G     ++   +S + ++L V   
Sbjct: 26  NDLDLPNLFSVTLRDAGQ-IALVDGDSKKIVKVIDTG---YAVHISRMSASGRYLLVIGR 81

Query: 282 KGTVHIF 288
              + + 
Sbjct: 82  DARIDMI 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	411
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.74
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.65
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.46
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.36
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.3
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.24
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.2
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.2
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.18
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.08
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.0
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.99
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.99
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.98
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.91
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.89
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.88
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.86
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.84
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.78
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.69
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.69
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.68
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.6
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.58
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.5
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.38
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.09
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.97
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.89
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.85
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.76
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.61
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.6
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.59
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.58
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.34
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.28
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.22
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.12
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.1
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.88
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.59
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.56
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.3
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.26
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.17
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.02
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.53
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.6
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.9
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.3
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.51
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.1

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-36  Score=276.15  Aligned_cols=278  Identities=12%  Similarity=0.086  Sum_probs=227.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcc---eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      .+|...|.+++|+|+|++|++|+||.|+|||+.....   ........|...|.++.|+|++..|++++.|     +.|+
T Consensus        48 ~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d-----g~i~  122 (337)
T d1gxra_          48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STLS  122 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc-----cccc
Confidence            3799999999999999999999999999999975432   2233334677889999999999999999888     9999


Q ss_pred             EEECCCCc--EEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          118 IWDDHQSR--CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       118 vwd~~~~~--~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      +||+....  ....+. |...+..+.|+|++.+++   .|+.|++|++.+++.......+...+..  +.+++++..+++
T Consensus       123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~--l~~s~~~~~~~~  200 (337)
T d1gxra_         123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC--IDISNDGTKLWT  200 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE--EEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccc
Confidence            99987554  444555 788999999999998887   6899999999999998888887775544  455556667765


Q ss_pred             ecCCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198          192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (411)
                       |+.|+.+++|+...........|...|.+++|+|++++|++++.|+. |++||+++++... ...  |...|++++|+|
T Consensus       201 -~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~-~~~--~~~~i~~v~~s~  275 (337)
T d1gxra_         201 -GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQ-LHL--HESCVLSLKFAY  275 (337)
T ss_dssp             -EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEE-ECC--CSSCEEEEEECT
T ss_pred             -ccccccccccccccceeecccccccceEEEEEcccccccceeccccc-ccccccccccccc-ccc--cccccceEEECC
Confidence             56899999998776544445568899999999999999999999999 9999999888753 333  788999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccc
Q 015198          272 NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWS  351 (411)
Q Consensus       272 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (411)
                      ++++|++++.||.|++||+.+++...                                                      
T Consensus       276 ~g~~l~s~s~Dg~i~iwd~~~~~~~~------------------------------------------------------  301 (337)
T d1gxra_         276 CGKWFVSTGKDNLLNAWRTPYGASIF------------------------------------------------------  301 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEE------------------------------------------------------
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEE------------------------------------------------------
Confidence            99999999999999999998876432                                                      


Q ss_pred             eEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEE
Q 015198          352 FAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (411)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~  387 (411)
                        ++. ....+..++|+++ +.|++++.||.|++|++
T Consensus       302 --~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         302 --QSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             --EEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             --Ecc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence              122 2245667889998 66888888999999987

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4e-36  Score=271.56  Aligned_cols=246  Identities=15%  Similarity=0.141  Sum_probs=205.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      .+.+.+..++++|+|+.|+.+.++.|.+|++++......  +.+|...+.++.|+|++.++++++.|     +.|++||+
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~--~~~H~~~v~~~~~sp~g~~latg~~d-----g~i~iwd~   87 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEI--YTEHSHQTTVAKTSPSGYYCASGDVH-----GNVRIWDT   87 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEES
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEE--EcCCCCCEEEEEEeCCCCeEeccccC-----ceEeeeee
Confidence            345567789999999999999988899999987554443  34788899999999999999999988     99999999


Q ss_pred             CCCcEE--EEEe-ecCceeEEEEcCCeEEEE--E---cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          122 HQSRCI--GEFA-FRSDVRSVKLSRDRIVVV--L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       122 ~~~~~~--~~~~-~~~~i~~~~~~~~~~~~~--~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      .+++..  ..+. |...|.+++|+|++.+++  .   +..+++|++++++....+..|...+..+++  ++++.+++++|
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~--~~~~~~~l~sg  165 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF--KPSRPFRIISG  165 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE--CSSSSCEEEEE
T ss_pred             eccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccc--cccceeeeccc
Confidence            887654  3455 789999999999998777  2   456999999999988888888875555555  45555545567


Q ss_pred             CCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC-----CCCcceEEE
Q 015198          194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG-----VDRAEIYSI  267 (411)
Q Consensus       194 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~-----~~~~~v~~l  267 (411)
                      +.|+.|++|+... +....+..|..+|.++.|+|++++|++++.|+. |++||+.+++.+..+...     .|...|+++
T Consensus       166 s~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccCcccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            7999999998765 566777889999999999999999999999999 999999999888776532     266789999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      +|+|++++|++|+.||.|+|||+++++..+
T Consensus       245 ~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         245 TWSPDGTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            999999999999999999999999887553

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-35  Score=262.21  Aligned_cols=280  Identities=13%  Similarity=0.176  Sum_probs=239.5

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..+.+|.+.|++|+|+|++++|++|+ ||.|+|||+++.+....  +..|...+.++.+++++..++.+..+     +.+
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~--~~~h~~~V~~~~~~~~~~~~~~~~~~-----~~~   83 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSAD-----MTI   83 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCC
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEE--EeCCCCcEEEEeeecccccccccccc-----ccc
Confidence            35789999999999999999999999 99999999998665544  44778889999999999999888877     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      .+|+....+....+. +...+.++.+++++..++   .|+.+++||+++++.+..+..+...  ..++.+++++.+|++ 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~-  160 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW--VRMVRPNQDGTLIAS-  160 (317)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECTTSSEEEE-
T ss_pred             ccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCc--ceeeecccCCCEEEE-
Confidence            999988888777666 889999999999988777   6899999999999999999888764  455556666777765 


Q ss_pred             cCCCCeEEEEEcCC-cceEEEeccccceeEEEecCC--------------------CCEEEEEcCCCeEEEEEECCCCce
Q 015198          193 GLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLD--------------------GLLLATASTRGTLIRIFNTVDGTR  251 (411)
Q Consensus       193 g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~--------------------g~~l~s~s~dg~~I~vwd~~~~~~  251 (411)
                      ++.|+.|++|+... .....+..|...+.+++|+|+                    +.++++++.|+. |++||++++++
T Consensus       161 ~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~~  239 (317)
T d1vyhc1         161 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMC  239 (317)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEE
T ss_pred             EeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE-EEEEECCCCcE
Confidence            66899999988654 566778889999999999875                    357899999999 99999999999


Q ss_pred             EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCC
Q 015198          252 LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP  331 (411)
Q Consensus       252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (411)
                      +.++..  |...|.+++|+|++++|++++.||.|+|||+++++...                                  
T Consensus       240 ~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------------------------------  283 (317)
T d1vyhc1         240 LMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK----------------------------------  283 (317)
T ss_dssp             EEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE----------------------------------
T ss_pred             EEEEeC--CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEE----------------------------------
Confidence            999998  88899999999999999999999999999999877542                                  


Q ss_pred             CCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198          332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (411)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~  386 (411)
                                            .++.+.+.+..++|+++ +.|++++.||.|++|+
T Consensus       284 ----------------------~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         284 ----------------------TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ----------------------EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ----------------------EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence                                  34444456778899998 7788899999999994

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-34  Score=268.72  Aligned_cols=244  Identities=13%  Similarity=0.137  Sum_probs=195.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEee----------------cCCCCEEEEEEeccCCeEEEEec
Q 015198           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRD----------------LKSGGFRIVEMLFRCNILALVGA  105 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~s~  105 (411)
                      +|.+.|+||+|+|||++||+|+|+.|+||++.+.+......                ...+...+.++.|++++.+++++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            69999999999999999999999999999998755443321                12455668899999999999999


Q ss_pred             CCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEc
Q 015198          106 GDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS  181 (411)
Q Consensus       106 ~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  181 (411)
                      +.|     +.|++||...++.+..+. |...|.++.+++++..++   .++.+++||..+.........+...  .....
T Consensus       140 ~~d-----g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~  212 (388)
T d1erja_         140 AED-----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV--TTVAV  212 (388)
T ss_dssp             ETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE--EEEEE
T ss_pred             ccc-----cccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccc--ccccc
Confidence            988     999999999999988887 899999999999987776   6899999999998887777655542  22222


Q ss_pred             cCCCceEEEEecCCCCeEEEEEcCCc-ceEE-------EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce--
Q 015198          182 HHSSTSVLACPGLQRGQVRIEHFGLN-MIKL-------INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR--  251 (411)
Q Consensus       182 ~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~-------~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~--  251 (411)
                      ...++.+|++ |+.||.|++|+.... ....       ..+|...|.+++|+|++++|++++.|+. |++||+.+++.  
T Consensus       213 ~~~~~~~l~~-~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~  290 (388)
T d1erja_         213 SPGDGKYIAA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKS  290 (388)
T ss_dssp             CSTTCCEEEE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC-------
T ss_pred             cCCCCCeEEE-EcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc-EEEEeccCCcccc
Confidence            3345566665 668999999887642 2222       3468899999999999999999999999 99999976543  


Q ss_pred             ----------EEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          252 ----------LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       252 ----------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                                ......  |...|.+++|+|++++|++|+.||.|++||+++++..
T Consensus       291 ~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         291 DSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             --------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccccccccceeeeccc--ccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence                      223333  7788999999999999999999999999999988754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=257.76  Aligned_cols=238  Identities=12%  Similarity=0.223  Sum_probs=207.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ..+|.+.|.+++|+|++++|++|+ |+.|++||+..........+..+...+..+.+++++..+++++.+     +.|++
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~  167 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAV  167 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccc-----ccccc
Confidence            457899999999999999999999 999999999865555555555777788889999999999988887     99999


Q ss_pred             EECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      |++.+++...... |...|.+++|++++..++   .|+.|++||+++++.+..+.. ..  .+.++.+++++.++++ |+
T Consensus       168 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-~~--~i~~l~~~~~~~~l~~-~~  243 (337)
T d1gxra_         168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-TS--QIFSLGYCPTGEWLAV-GM  243 (337)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SS--CEEEEEECTTSSEEEE-EE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccceeeccccc-cc--ceEEEEEcccccccce-ec
Confidence            9999999888777 899999999999987777   689999999999998877753 33  4556666777777775 66


Q ss_pred             CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC
Q 015198          195 QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (411)
Q Consensus       195 ~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (411)
                      .|+.+++|+...........|...|.+++|+|+|++|++++.|+. |++||+.+++.+..+.   |...|.+++|+|+++
T Consensus       244 ~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~~---~~~~v~~~~~s~d~~  319 (337)
T d1gxra_         244 ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVDDK  319 (337)
T ss_dssp             TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTTSC
T ss_pred             cccccccccccccccccccccccccceEEECCCCCEEEEEeCCCe-EEEEECCCCCEEEEcc---CCCCEEEEEEeCCCC
Confidence            899999999988888888899999999999999999999999999 9999999999988776   677999999999999


Q ss_pred             EEEEEeCCCcEEEEEc
Q 015198          275 WLAVASDKGTVHIFSL  290 (411)
Q Consensus       275 ~l~s~s~dg~I~vwd~  290 (411)
                      +|++|+.||+|+|||+
T Consensus       320 ~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         320 YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEEE
Confidence            9999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.3e-33  Score=251.09  Aligned_cols=284  Identities=12%  Similarity=0.076  Sum_probs=227.1

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      ....+.||.+.|++|+|+|++++||+|+ ||.|+|||+.+.+......  .|...+.++.|+|++.++++++.|     +
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~d-----~  119 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP--LRSSWVMTCAYAPSGNYVACGGLD-----N  119 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE--CSCSCEEEEEECTTSSEEEEEETT-----C
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe--cccccEEeeEeeccceeeeeeccc-----c
Confidence            3345789999999999999999999999 9999999999866554443  677788999999999999999888     9


Q ss_pred             eEEEEECCCC----cEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCce
Q 015198          115 KVIIWDDHQS----RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (411)
Q Consensus       115 ~i~vwd~~~~----~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (411)
                      .+++|+....    .....+. +...........+.....  .+.....+.............+...  +......+...
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  197 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD--VMSLSLAPDTR  197 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSC--EEEEEECTTSS
T ss_pred             eeecccccccccccccceeccccccccccccccccccccccccccccccccccccccccccccccee--Eeeeccccccc
Confidence            9999996554    3344444 555555555555555555  6888888988777766666655553  34444444555


Q ss_pred             EEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE
Q 015198          188 VLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (411)
                      ++++ |..|+.|++|+.. ++.+..+.+|...|++++|+|++++|++++.|+. |++||++..+.+..+....+...|.+
T Consensus       198 ~~~~-~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         198 LFVS-GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             EEEE-EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             eeEE-eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe-EEEEeecccccccccccccccCceEE
Confidence            6654 6689999998865 4667788999999999999999999999999999 99999999998888876667778999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccc
Q 015198          267 IALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF  346 (411)
Q Consensus       267 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (411)
                      ++|+|++++|++|+.||.|+|||+.+++...                                                 
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~-------------------------------------------------  306 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAG-------------------------------------------------  306 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTTCCEEE-------------------------------------------------
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCcEEE-------------------------------------------------
Confidence            9999999999999999999999999877543                                                 


Q ss_pred             ccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEE
Q 015198          347 SSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (411)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~  386 (411)
                             +++-+.+.+..++|+++ ..|++++.||.|++|+
T Consensus       307 -------~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         307 -------VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -------EECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -------EEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                   23333456777899998 6788888999999994

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-33  Score=252.27  Aligned_cols=283  Identities=12%  Similarity=0.066  Sum_probs=213.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....||.+.|++|+|+|++++|++|+ |+.|++||+++.+..... ...|...+.++.|++++.+++++. |     +.+
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~h~~~v~~v~~~~~g~~~~~~~-d-----~~v   78 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-PDVHATMITGIKTTSKGDLFTVSW-D-----DHL   78 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-SCSCSSCEEEEEECTTSCEEEEET-T-----TEE
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCCcEEEEEeeccceeecccc-e-----eeE
Confidence            45789999999999999999999999 999999999875543322 235677889999999987766654 4     899


Q ss_pred             EEEECCCCcE----EEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          117 IIWDDHQSRC----IGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       117 ~vwd~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      ++|+......    .....+...+.++++++++.+++  .++.+++|+..  +.......  .  ...++++++++.+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~--~~~~~~~~--~--~~~~~~~s~~~~~l~  152 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG--KLTEVPIS--Y--NSSCVALSNDKQFVA  152 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT--EEEEEECS--S--CEEEEEECTTSCEEE
T ss_pred             EEeccCCccccccccccccccccccccccccccccccccccccccccccc--cccccccc--c--ccccccccccccccc
Confidence            9999655321    12233677889999999998777  78999999954  33222222  2  234455566667776


Q ss_pred             EecCCCCeEEEEEcCCcceE--EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC-CCCCcceEEE
Q 015198          191 CPGLQRGQVRIEHFGLNMIK--LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSI  267 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l  267 (411)
                      + |+.||.|++|+.......  ....|...|.+++|+|++++|++++.|+. |++||+.++..+..... ..|...|+++
T Consensus       153 ~-g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~~~~~~~~~h~~~v~~l  230 (299)
T d1nr0a2         153 V-GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACV  230 (299)
T ss_dssp             E-EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred             c-ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            5 668999999987765433  34578999999999999999999999999 99999988766543321 2277899999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccc
Q 015198          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (411)
                      +|+|++++|++|+.||.|+|||++++.........                                             
T Consensus       231 ~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~---------------------------------------------  265 (299)
T d1nr0a2         231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG---------------------------------------------  265 (299)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT---------------------------------------------
T ss_pred             cccccccceEEEcCCCEEEEEECCCCCcceEEEec---------------------------------------------
Confidence            99999999999999999999999987643210000                                             


Q ss_pred             cccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEe
Q 015198          348 SEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~  388 (411)
                              .-.......+.|.+++.|++++.||.|++|+++
T Consensus       266 --------~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         266 --------AHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             --------SSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             --------CCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence                    001123455667677899999999999999874

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-33  Score=254.78  Aligned_cols=245  Identities=13%  Similarity=0.125  Sum_probs=200.3

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+|.+.|++++|+|+|++||+|+ ||.|+||++..........+..+...+.++.|++++..+++++.+   .+..+
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~---~~~~~  128 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG---RERFG  128 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECC---SSCSE
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccc---ccccc
Confidence            44578999999999999999999999 999999999987766666566778889999999998877776653   23679


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEE-EE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIV-VV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~-~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      ++|++++++.+..+. |...|.+++|+|++.+ ++   .|+.|++||+++++....+..|..++.  ++.++|++.++++
T Consensus       129 ~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~--~v~~~p~~~~l~~  206 (311)
T d1nr0a1         129 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH--SVRYNPDGSLFAS  206 (311)
T ss_dssp             EEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE--EEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccceeeeccccccccccccccccccccccccccccccc--ccccCcccccccc
Confidence            999999998888877 8899999999998864 33   589999999999999999988877544  5555566677776


Q ss_pred             ecCCCCeEEEEEcCCc-ceEEE-------eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCC-Cc
Q 015198          192 PGLQRGQVRIEHFGLN-MIKLI-------NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-RA  262 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~~-~~~~~-------~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-~~  262 (411)
                       ++.|+.|++|+.... ....+       .+|...|++++|+|++++|++|+.||. |+|||+++++++.++..+.. ..
T Consensus       207 -~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~-v~iwd~~t~~~~~~l~~~~~~~~  284 (311)
T d1nr0a1         207 -TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIED  284 (311)
T ss_dssp             -EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGG
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe-EEEEECCCCcEEEEEECCCCccc
Confidence             568999999987643 33332       368899999999999999999999999 99999999999999886421 12


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          263 EIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      .+.++.|  ++++|++++.||.|++||.+
T Consensus       285 ~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         285 QQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             eEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            4455555  45679999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-33  Score=260.80  Aligned_cols=240  Identities=12%  Similarity=0.126  Sum_probs=196.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      +.++|+|++|+|||++||+|+ |+.|+||+.++.+......+++|...|.++.|+|++.++++++.|     +.|+|||+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D-----~~i~vWd~   80 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTL   80 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC-----CeEEEEee
Confidence            346799999999999999999 999999999876655555566888899999999999999999888     99999999


Q ss_pred             CCCcEEEEEe---ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEE----eccCCCcceEEEccCCCceEEEE
Q 015198          122 HQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI----ETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       122 ~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      .++.....+.   +...|.+++|+|++..++   .|+.|++|++.........    ..+..  .+.++.++|++.+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~--~v~~v~~~p~~~~l~s  158 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS--TVLSLDWHPNSVLLAA  158 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS--CEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccc--ccccccccccccceec
Confidence            8877655553   678899999999998887   6899999998655433222    23333  4566777778888875


Q ss_pred             ecCCCCeEEEEEcCC-------------------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE
Q 015198          192 PGLQRGQVRIEHFGL-------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL  252 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~-------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~  252 (411)
                       |+.|+.|++|+...                   ..+.....|...|.+++|+|+|++|++++.|+. |++||+.+++.+
T Consensus       159 -~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~~~~  236 (371)
T d1k8kc_         159 -GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMAV  236 (371)
T ss_dssp             -EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTEE
T ss_pred             -cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc-ceEEeeecccce
Confidence             66899999998643                   234455678899999999999999999999999 999999999999


Q ss_pred             EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      ..+..  |..+|.+++|+||+++|++| .|+.+++|..+...
T Consensus       237 ~~~~~--~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~  275 (371)
T d1k8kc_         237 ATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAA  275 (371)
T ss_dssp             EEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTT
T ss_pred             eeeec--ccccceeeeecCCCCEEEEE-cCCceEEEEeeCCC
Confidence            99988  77899999999999887765 47778887776543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.9e-31  Score=242.19  Aligned_cols=241  Identities=13%  Similarity=0.116  Sum_probs=182.1

Q ss_pred             CeEEEEEcCCCCEEEEEeCCc--EEEEecCCCcceEEeecCCC-CEEEEEEeccC--CeEEEEecCCCCCCCCCeEEEEE
Q 015198           46 ELISVSWNQDYGCFAAGTSCG--FRIYNCEPFKETFRRDLKSG-GFRIVEMLFRC--NILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~--i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      .+++++|+|+++.|+++++..  |+.|+...........+.+| ...+.++.|+|  ++.++++++.|     |+|++||
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~D-----g~i~iWd   93 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES-----GKVIVWG   93 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT-----SEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCC-----CCEEEee
Confidence            457899999999999988444  44555433322223334354 45688888886  67899999988     9999999


Q ss_pred             CCCCcEE--------EEEe-ecCceeEEEEcCCeEEEE-----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc
Q 015198          121 DHQSRCI--------GEFA-FRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (411)
Q Consensus       121 ~~~~~~~--------~~~~-~~~~i~~~~~~~~~~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (411)
                      +..++..        ..+. +..+|.+++|++++..++     .++.+++|+.++++.+..+..|...+..+++.+  ++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~  171 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ--SR  171 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECS--SS
T ss_pred             ecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccc--cc
Confidence            7654321        1122 678899999999998776     367899999999999999988887655555554  44


Q ss_pred             eEEEEecCCCCeEEEEEcCC-cceEEE---eccccceeEEEecCC-CCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCC
Q 015198          187 SVLACPGLQRGQVRIEHFGL-NMIKLI---NAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR  261 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~-~~~~~~---~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~  261 (411)
                      ..++.+++.|+.+++|+... +....+   ..|...|.+++|+|+ +.+|++++.|+. |++||+++++.+..+..  |.
T Consensus       172 ~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~~~~~~~l~~--~~  248 (325)
T d1pgua1         172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIED--DQ  248 (325)
T ss_dssp             SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEEEECCB--TT
T ss_pred             cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeeccccccccccc--cc
Confidence            44444566899999998654 333333   456788999999997 689999999999 99999999999999887  55


Q ss_pred             cceEEEEeC---CCCCEEEEEeCCCcEEEEEccccccC
Q 015198          262 AEIYSIALS---PNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       262 ~~v~~l~~s---pdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      ..+..+.|+   +||++|++++.|+.|+|||+++++..
T Consensus       249 ~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            555444444   68999999999999999999988754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.2e-30  Score=236.58  Aligned_cols=240  Identities=16%  Similarity=0.226  Sum_probs=196.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ...|...|++++|+|++++|++|+ ||.|++|+....+.....  ..|...+..+.+.+++..++.++.+     +.+++
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~-----~~i~~  189 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--QGHEQDIYSLDYFPSGDKLVSGSGD-----RTVRI  189 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETT-----SEEEE
T ss_pred             ccCCCCCEEEEEECCCCCcceeccccccccccccccccccccc--ccccccccccccccccccccccccc-----eeeee
Confidence            346888899999999999999999 999999999876554443  3677888899999988888888777     99999


Q ss_pred             EECCCCcEEEEEeecCceeEEEEcC-CeEEEE---EcCeEEEEEcCCceeeEEEec-------cCCCcceEEEccCCCce
Q 015198          119 WDDHQSRCIGEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIET-------LANLRGLCCLSHHSSTS  187 (411)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~---~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  187 (411)
                      ||..+........+.....++.+.+ ++.+++   .|+.|++||+.+++.+..+..       |..  .+.++.+++++.
T Consensus       190 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~  267 (388)
T d1erja_         190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--SVYSVVFTRDGQ  267 (388)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS--CEEEEEECTTSS
T ss_pred             eeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCC--CEEEEEECCCCC
Confidence            9999998888877666666666654 666666   689999999999887776643       333  455666777777


Q ss_pred             EEEEecCCCCeEEEEEcCC-------------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE
Q 015198          188 VLACPGLQRGQVRIEHFGL-------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (411)
Q Consensus       188 ~l~~~g~~dg~i~i~~~~~-------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (411)
                      +|++ |+.||.|++|+...             ........|...|.+++|+|++++|++|+.||. |++||+++++++.+
T Consensus       268 ~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~~~~~~~~  345 (388)
T d1erja_         268 SVVS-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLM  345 (388)
T ss_dssp             EEEE-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEE
T ss_pred             EEEE-EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEE
Confidence            8875 66899999998653             234455678999999999999999999999999 99999999999999


Q ss_pred             EeCCCCCcceEEEEe------CCCCCEEEEEeCCCcEEEEEccc
Q 015198          255 VRRGVDRAEIYSIAL------SPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       255 ~~~~~~~~~v~~l~~------spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      +.+  |.+.|.++++      +|++++|++|+.||+|+||+++.
T Consensus       346 l~~--H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         346 LQG--HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             EEC--CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EeC--CCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            998  8889999874      67999999999999999999864

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.4e-29  Score=226.44  Aligned_cols=241  Identities=11%  Similarity=0.211  Sum_probs=208.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+|.+.|.+++|+|++.+++++. ++.+.+|+.........  +..+...+..+.+.+++..+++++.|     +.+
T Consensus        53 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~  125 (317)
T d1vyhc1          53 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT--MHGHDHNVSSVSIMPNGDHIVSASRD-----KTI  125 (317)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC--CCCCSSCEEEEEECSSSSEEEEEETT-----SEE
T ss_pred             EEEeCCCCcEEEEeeecccccccccccccccccccccccccccc--cccccccceeeeccCCCceEEeeccC-----cce
Confidence            44678999999999999999999999 99999999886554333  34677788889999998888888887     999


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC--------
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS--------  184 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------  184 (411)
                      ++||+.+++.+..+. |...+.++++++++.+++   .|+.|++|++.+++.+..+..+...+..+.+.+..        
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  205 (317)
T d1vyhc1         126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA  205 (317)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             eEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeecc
Confidence            999999999999888 889999999999998887   69999999999999998888877765555554432        


Q ss_pred             ----------CceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEE
Q 015198          185 ----------STSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (411)
Q Consensus       185 ----------~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (411)
                                .+.+++ +|+.|+.|++|+.. ++.+..+.+|...|.+++|+|++++|++++.||. |++||+.+++++.
T Consensus       206 ~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~  283 (317)
T d1vyhc1         206 TGSETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMK  283 (317)
T ss_dssp             CSCC-------CCEEE-EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCE
T ss_pred             ccceeeeeccCCceeE-eccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCe-EEEEECCCCcEEE
Confidence                      123444 46789999998865 4667888999999999999999999999999999 9999999999999


Q ss_pred             EEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      ++.+  |...|++++|+|++++|++|+.||+|+|||
T Consensus       284 ~~~~--h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         284 TLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9998  888999999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-28  Score=224.40  Aligned_cols=274  Identities=14%  Similarity=0.168  Sum_probs=193.5

Q ss_pred             cccCCCCCCe-EEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           38 AFSDVDEIEL-ISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        38 ~~~~~h~~~V-~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      ..+.||.+.| +|++|  ++++|++|+ ||.|+|||+.+.+.+..  +.+|...|.++.|+++. .+++++.|     +.
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~--l~~H~~~V~~l~~s~~~-~l~s~s~D-----~~   75 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ--LSGHDGGVWALKYAHGG-ILVSGSTD-----RT   75 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEE--EECCSSCEEEEEEETTT-EEEEEETT-----CC
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEE--EECCCCCEEEEEEcCCC-EEEEEecc-----cc
Confidence            4578998886 56655  578999999 99999999988655444  44788889999998876 46677777     99


Q ss_pred             EEEEECCCCcEEEEEee---cCceeEEEEcCCeEEEE---EcCeEEEEEcCCc---------------------------
Q 015198          116 VIIWDDHQSRCIGEFAF---RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL---------------------------  162 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~---------------------------  162 (411)
                      |++|+....+.......   ........+.+++..++   .|+.|++||+.+.                           
T Consensus        76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d1nexb2          76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  155 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred             cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence            99999988887766652   23334455666766655   5677777776433                           


Q ss_pred             ------------------------------------eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcC-
Q 015198          163 ------------------------------------KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-  205 (411)
Q Consensus       163 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-  205 (411)
                                                          +.+.....+..  ....+.+++++..+++ ++.|+.|++|+.. 
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~  232 (355)
T d1nexb2         156 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIYDHERKRCIS-ASMDTTIRIWDLEN  232 (355)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEETTTTEEEE-EETTSCEEEEETTT
T ss_pred             eeeeccccccccccccceeeeecccceeeeeecccccceeeeecccc--ccccccccccceeeec-ccccceEEeeeccc
Confidence                                                22222222222  2233344455566655 5689999998765 


Q ss_pred             CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE-EEeCCCCCEEEEEeCCCc
Q 015198          206 LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS-IALSPNVQWLAVASDKGT  284 (411)
Q Consensus       206 ~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~-l~~spdg~~l~s~s~dg~  284 (411)
                      +..+..+.+|...|.++++++  ++|++++.||. |++||++++.......    ...+.. ..+++++++|++| .||.
T Consensus       233 ~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~-i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~g-~d~~  304 (355)
T d1nexb2         233 GELMYTLQGHTALVGLLRLSD--KFLVSAAADGS-IRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSG-SENQ  304 (355)
T ss_dssp             CCEEEEECCCSSCCCEEEECS--SEEEEECTTSE-EEEEETTTCCEEEEEE----CTTCCCCCEEEECSSEEEEE-ETTE
T ss_pred             ccccccccccccccccccccc--ceeeeeecccc-cccccccccceecccc----cCCceEEEEEcCCCCEEEEE-eCCE
Confidence            466778899999999999864  68999999999 9999999887665543    223443 4567777777665 5889


Q ss_pred             EEEEEccccccCCC-CCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceE
Q 015198          285 VHIFSLRVRVVGED-SSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHF  363 (411)
Q Consensus       285 I~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (411)
                      |+|||+++++.... ...|                                                        .+.+.
T Consensus       305 i~vwd~~tg~~~~~~~~~~--------------------------------------------------------~~~V~  328 (355)
T d1nexb2         305 FNIYNLRSGKLVHANILKD--------------------------------------------------------ADQIW  328 (355)
T ss_dssp             EEEEETTTCCBCCSCTTTT--------------------------------------------------------CSEEE
T ss_pred             EEEEECCCCCEEEEEecCC--------------------------------------------------------CCCEE
Confidence            99999999886531 1111                                                        13456


Q ss_pred             EEEEccCCEEEEEEeCCcEEEEEEe
Q 015198          364 IAAFGSQNTVVIVSMDGSFYRCSFD  388 (411)
Q Consensus       364 ~~~~~~~~~~~~~~~dg~~~~~~~~  388 (411)
                      .++|+++..+++++.||.+++|.++
T Consensus       329 ~v~~~~~~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         329 SVNFKGKTLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             EEEEETTEEEEEEESSSCEEEEEEE
T ss_pred             EEEEcCCeEEEEEECCCcEEEEEEe
Confidence            6889887666677789999888776

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.8e-28  Score=217.83  Aligned_cols=265  Identities=9%  Similarity=0.073  Sum_probs=204.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..+.+|.++|++++|+|    |++|+ ||.|++||+.+..       ..|...+.++.+.++.. +++++.|     ++|
T Consensus         7 ~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-------~~h~~~V~~~~~~~~~~-~~s~s~D-----~~v   69 (287)
T d1pgua2           7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-------QDHSNLIVSLDNSKAQE-YSSISWD-----DTL   69 (287)
T ss_dssp             EEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-------CCCCSCEEEEECCSTTC-CEEEETT-----TEE
T ss_pred             EEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-------CCCCCCEEEEEecCCCe-EEEEeec-----ccc
Confidence            45789999999999997    88888 9999999987522       25677788888887765 4666666     999


Q ss_pred             EEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC
Q 015198          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      ++|++..      ..+...+..+.+++++..++  .++.+.+|+..+++.+..+....   ...++++++  ..+++++.
T Consensus        70 ~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~v~~~  138 (287)
T d1pgua2          70 KVNGITK------HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS---PGSAVSLSQ--NYVAVGLE  138 (287)
T ss_dssp             EETTEEE------EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS---CEEEEEECS--SEEEEEET
T ss_pred             ccccccc------cccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc---eeeeeeccC--cceeeecc
Confidence            9999532      34566788889999988877  68889999999998888876543   345666654  35555565


Q ss_pred             CCCeEEEEEcCCcce-EEE-eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198          195 QRGQVRIEHFGLNMI-KLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (411)
Q Consensus       195 ~dg~i~i~~~~~~~~-~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (411)
                      .++.+++|+...... ..+ ..|...+++++|+|++.+|++|+.||. |++||+.+++.+..... .|...|.+++|+|+
T Consensus       139 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~-~h~~~v~~~~~~p~  216 (287)
T d1pgua2         139 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRWA-FRTSKINAISWKPA  216 (287)
T ss_dssp             TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCSC-CCSSCEEEEEECCC
T ss_pred             ccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc-ccceeeccccccccccc-ccccccceeeeccc
Confidence            667899998764332 222 347788999999999999999999999 99999998876644322 27889999999874


Q ss_pred             ----------CCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccccccccc
Q 015198          273 ----------VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL  342 (411)
Q Consensus       273 ----------g~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (411)
                                +.+|++|+.|++|+|||++++.+...                                            
T Consensus       217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~--------------------------------------------  252 (287)
T d1pgua2         217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK--------------------------------------------  252 (287)
T ss_dssp             C------CCSCCEEEEEETTSCEEEEESSCTTCCEE--------------------------------------------
T ss_pred             ccccccccCCCCeeEeecCCCeEEEEECCCCCeEEE--------------------------------------------
Confidence                      46899999999999999987543210                                            


Q ss_pred             CcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEE
Q 015198          343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSF  387 (411)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~  387 (411)
                                 ....+.+.+..++|++++.|++++.||.|++|++
T Consensus       253 -----------~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         253 -----------ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             -----------ETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             -----------EeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence                       0111224567788999999999999999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=7.3e-29  Score=229.16  Aligned_cols=236  Identities=15%  Similarity=0.166  Sum_probs=188.1

Q ss_pred             EEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc--EEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCC
Q 015198           88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD  161 (411)
Q Consensus        88 ~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~--~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~  161 (411)
                      ..|.+++|++++..+++++.+     +.|+|||+.+++  .+..++ |...|.+++|+|++.+++   .|+.|++||+.+
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCeEEEEECCCCCEEEEEeCC-----CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            347788999999999998887     999999988775  455566 899999999999998887   689999999987


Q ss_pred             ceeeEEEe--ccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc-----eEEEeccccceeEEEecCCCCEEEEE
Q 015198          162 LKLLHQIE--TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-----IKLINAHDSHIACFTLTLDGLLLATA  234 (411)
Q Consensus       162 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-----~~~~~~~~~~i~~l~~sp~g~~l~s~  234 (411)
                      ++....+.  .+..  .+.++.++|++..|++ |+.|+.|++|......     ......|...|.+++|+|++++|++|
T Consensus        83 ~~~~~~~~~~~~~~--~v~~i~~~p~~~~l~~-~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          83 RTWKPTLVILRINR--AARCVRWAPNEKKFAV-GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             TEEEEEEECCCCSS--CEEEEEECTTSSEEEE-EETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccc--ccccccccccccccee-ecccCcceeeeeecccccccccccccccccccccccccccccceecc
Confidence            76555543  3444  4555666667777776 6689999997765422     22335688999999999999999999


Q ss_pred             cCCCeEEEEEECCCC------------------ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          235 STRGTLIRIFNTVDG------------------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       235 s~dg~~I~vwd~~~~------------------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      +.|+. |++||+...                  +.+.....  |...|.+++|+|++++|++++.|+.|++||++++...
T Consensus       160 s~D~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~  236 (371)
T d1k8kc_         160 SCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS--SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  236 (371)
T ss_dssp             ETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC--CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             ccCcE-EEEEeeccCccccccccccccccccceeeeeeccC--ccCcEEEEEeecccccccccccCCcceEEeeecccce
Confidence            99999 999997643                  23334344  7889999999999999999999999999999887643


Q ss_pred             CCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEE
Q 015198          297 EDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIV  376 (411)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (411)
                      .                                                        .++.+...+..++|++++.++++
T Consensus       237 ~--------------------------------------------------------~~~~~~~~v~s~~fs~d~~~la~  260 (371)
T d1k8kc_         237 A--------------------------------------------------------TLASETLPLLAVTFITESSLVAA  260 (371)
T ss_dssp             E--------------------------------------------------------EEECSSCCEEEEEEEETTEEEEE
T ss_pred             e--------------------------------------------------------eeecccccceeeeecCCCCEEEE
Confidence            2                                                        34444445677899999999999


Q ss_pred             EeCCcEEEEEEecC
Q 015198          377 SMDGSFYRCSFDPV  390 (411)
Q Consensus       377 ~~dg~~~~~~~~~~  390 (411)
                      +.|+.+.+|..+..
T Consensus       261 g~d~~~~~~~~~~~  274 (371)
T d1k8kc_         261 GHDCFPVLFTYDSA  274 (371)
T ss_dssp             ETTSSCEEEEEETT
T ss_pred             EcCCceEEEEeeCC
Confidence            99999999988863

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-28  Score=223.38  Aligned_cols=247  Identities=12%  Similarity=0.088  Sum_probs=185.2

Q ss_pred             ccCCC-CCCeEEEEEcC--CCCEEEEEe-CCcEEEEecCCCcceEE------eecCCCCEEEEEEeccCCeEEEEecCCC
Q 015198           39 FSDVD-EIELISVSWNQ--DYGCFAAGT-SCGFRIYNCEPFKETFR------RDLKSGGFRIVEMLFRCNILALVGAGDN  108 (411)
Q Consensus        39 ~~~~h-~~~V~~l~~s~--~g~~la~g~-dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~s~~~d  108 (411)
                      ...+| ...|++++|+|  ++++|++|+ ||.|+|||+........      ..+..+...+.++.|++++..++.++.+
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            45566 46899999998  578999999 99999999865332211      1123455668888898887665544332


Q ss_pred             CCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEE-E---EcCeEEEEEcCCceeeEEEeccC-CCcceEEEcc
Q 015198          109 SQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVV-V---LEHKIYVYSFVDLKLLHQIETLA-NLRGLCCLSH  182 (411)
Q Consensus       109 ~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-~---~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~  182 (411)
                         .++.+++|+..+++.+..+. |...|.+++|+|++..+ +   .|+.|++||+..++....+..+. ....+.++++
T Consensus       137 ---~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~  213 (325)
T d1pgua1         137 ---RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF  213 (325)
T ss_dssp             ---SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred             ---ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeee
Confidence               22889999999999999888 89999999999987542 2   58999999999888777765432 2223455556


Q ss_pred             CCC-ceEEEEecCCCCeEEEEEcC-CcceEEEeccccceeEEEec---CCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          183 HSS-TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLT---LDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       183 ~~~-~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~s---p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      +|+ +.++++ ++.|+.|++|+.. ++.+..+.+|..++..+.|+   |+|++|++++.|+. |+|||+++++++..+..
T Consensus       214 ~pd~~~~l~s-~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~~~~~~~~~~~  291 (325)
T d1pgua1         214 SPDSGEFVIT-VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSKCVQKWTL  291 (325)
T ss_dssp             CSTTCCEEEE-EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETTTTEEEEEEEC
T ss_pred             ccccceeccc-cccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe-EEEEECCCCCEEEEEEe
Confidence            654 345554 6689999999865 56677888888887766665   78999999999999 99999999999998887


Q ss_pred             CCCCcceEEEEeCCC-CCEEEEEeCCCcEEEEEc
Q 015198          258 GVDRAEIYSIALSPN-VQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       258 ~~~~~~v~~l~~spd-g~~l~s~s~dg~I~vwd~  290 (411)
                      +.+...+..+++.+. +.+|++++.||.|+|||+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         292 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            555544444444432 347889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-27  Score=214.73  Aligned_cols=239  Identities=17%  Similarity=0.265  Sum_probs=175.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..+.+|.+.|.+ +++++|++||+|+ ||.|+|||+.+.+...  .+.+|...+.++.|+++  .+++++.|     +.+
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~--~~~~h~~~V~~v~~~~~--~l~s~s~D-----~~~   79 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--TLVGHTGGVWSSQMRDN--IIISGSTD-----RTL   79 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE--ECCCCSSCEEEEEEETT--EEEEEETT-----SCE
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE--EEeCCCCCEEEEEeCCC--ccccceec-----ccc
Confidence            357899999865 4667899999999 9999999998865433  35578888999999887  66777776     899


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCC---------------------------------------eEEEE--EcCeE
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRD---------------------------------------RIVVV--LEHKI  154 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~---------------------------------------~~~~~--~dg~i  154 (411)
                      ++|+........... ....+......+.                                       ...+.  .|+.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence            999877655443332 1222221111111                                       11122  57888


Q ss_pred             EEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEE
Q 015198          155 YVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLAT  233 (411)
Q Consensus       155 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s  233 (411)
                      ++||+...+.+..+..+..  ....+.+++  ..+++ |+.||.|++|+... +.+..+..|...+.+++++  +++|++
T Consensus       160 ~~~d~~~~~~~~~~~~~~~--~~~~~~~~~--~~l~s-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s  232 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTN--RVYSLQFDG--IHVVS-GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVS  232 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSS--CEEEEEECS--SEEEE-EETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEE
T ss_pred             EEeecccceeeEEEcCccc--ccccccCCC--CEEEE-EeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEE
Confidence            8888888888777776654  445555544  45654 66899999988765 5677788999999888775  469999


Q ss_pred             EcCCCeEEEEEECCCCceEEEEeCC-CCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          234 ASTRGTLIRIFNTVDGTRLQEVRRG-VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       234 ~s~dg~~I~vwd~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      ++.|+. |++||+...+....+... .|...+.++.++  ++++++|+.||+|+|||+++++..
T Consensus       233 ~s~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i  293 (342)
T d2ovrb2         233 GNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI  293 (342)
T ss_dssp             EETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EcCCCE-EEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEE
Confidence            999999 999999999888887753 244567777765  578999999999999999998754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.5e-26  Score=209.39  Aligned_cols=240  Identities=13%  Similarity=0.137  Sum_probs=190.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc--eEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      .....|...|.+++|+|+++++++|+ |+.+++|+......  .....+..+...........+........ +     .
T Consensus        91 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~  164 (340)
T d1tbga_          91 HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-D-----T  164 (340)
T ss_dssp             EEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEET-T-----T
T ss_pred             EEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccccccccccc-c-----c
Confidence            34567999999999999999999999 99999999865332  22223334444444444444444444433 3     7


Q ss_pred             eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      ....+............ +...+....+.+.+.+++   .|+.|++||+++++.+..+..|...+..+  ++++++.+|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v--~~~p~~~~l~  242 (340)
T d1tbga_         165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI--CFFPNGNAFA  242 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEE--EECTTSSEEE
T ss_pred             cccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEE--EECCCCCEEE
Confidence            88888877776665555 778889999998887776   68999999999999999999888755544  4555667777


Q ss_pred             EecCCCCeEEEEEcCCcce-EEE--eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEE
Q 015198          191 CPGLQRGQVRIEHFGLNMI-KLI--NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~~-~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (411)
                      + |+.||.|++|+...... ..+  ..+...|.+++|+|++++|++|+.||. |++||+.+++.+..+.+  |...|+++
T Consensus       243 s-~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--H~~~V~~l  318 (340)
T d1tbga_         243 T-GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSCL  318 (340)
T ss_dssp             E-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEE
T ss_pred             E-EeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCE-EEEEECCCCcEEEEEcC--CCCCEEEE
Confidence            5 66899999998876443 333  356778999999999999999999999 99999999999999988  88899999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEE
Q 015198          268 ALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      +|+|++++|++|+.||.|+|||
T Consensus       319 ~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         319 GVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECTTSSCEEEEETTSCEEEEC
T ss_pred             EEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.6e-27  Score=217.60  Aligned_cols=255  Identities=11%  Similarity=0.196  Sum_probs=175.4

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcc------eEEeecCCCC---EEEE-EEecc-CCeEEEEec
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE------TFRRDLKSGG---FRIV-EMLFR-CNILALVGA  105 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~------~~~~~~~~~~---~~~~-~~~~~-~~~~~l~s~  105 (411)
                      ....+|.+.|+++++++  ++|++++ |+.|+|||..+.+.      ......+...   .... ..... .+..+++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            45689999999999875  6899999 99999999765331      1222111111   1111 12222 245677788


Q ss_pred             CCCCCCCCCeEEEEECCCCcE---EEE--Ee------ecCceeEEEEcCCe-----EEEE---EcCeEEEEEcCCce---
Q 015198          106 GDNSQYPPTKVIIWDDHQSRC---IGE--FA------FRSDVRSVKLSRDR-----IVVV---LEHKIYVYSFVDLK---  163 (411)
Q Consensus       106 ~~d~~~~d~~i~vwd~~~~~~---~~~--~~------~~~~i~~~~~~~~~-----~~~~---~dg~i~iwd~~~~~---  163 (411)
                      +.|     +.|++|++.....   ...  ..      +...+..+++.++.     .+++   .|+.+++|++....   
T Consensus        86 ~~d-----g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~  160 (393)
T d1sq9a_          86 SFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  160 (393)
T ss_dssp             ETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             eCC-----CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence            877     9999999654322   111  11      34567788887653     3333   69999999973210   


Q ss_pred             ------------eeEEEec-cCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC-cceE------EEeccccceeEEE
Q 015198          164 ------------LLHQIET-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIK------LINAHDSHIACFT  223 (411)
Q Consensus       164 ------------~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~------~~~~~~~~i~~l~  223 (411)
                                  ....... ......+.++.+++++ +|+ +|+.||.|+||+... +.+.      .+.+|..+|.+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~la-sgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA-TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE-EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             ceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEE-EEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence                        1111111 1111224455566665 554 588999999998764 3333      3457899999999


Q ss_pred             ecCCCCEEEEEcCCC---eEEEEEECCCCceEEEEeCC-----------CCCcceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          224 LTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRG-----------VDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       224 ~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~-----------~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      |+|+|++|++|+.|+   . |++||+++++.+..+...           .|...|++++|+||+++|++++.|++|+|||
T Consensus       239 ~spdg~~l~sgs~D~t~~~-i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         239 FSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             ECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             cccccceeeeecCCCCcce-eeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            999999999999886   5 899999999988887521           2778999999999999999999999999999


Q ss_pred             ccccccCCCCCCC
Q 015198          290 LRVRVVGEDSSSS  302 (411)
Q Consensus       290 ~~~~~~~~~~~~~  302 (411)
                      ++++++...+..|
T Consensus       318 ~~~g~~~~~l~gH  330 (393)
T d1sq9a_         318 VKTKERITTLNMH  330 (393)
T ss_dssp             TTTTEEEEEEECC
T ss_pred             CCCCCEEEEECCc
Confidence            9999887766665

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.5e-26  Score=199.07  Aligned_cols=278  Identities=10%  Similarity=0.187  Sum_probs=202.1

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+|...|+|++|  ||++||+|+ ||.|+|||+++.+....  +.+|...+.++.|++  .++++++.|     +.|
T Consensus         9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~--l~~H~~~V~~v~~~~--~~l~s~s~D-----~~i   77 (293)
T d1p22a2           9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI--LTGHTGSVLCLQYDE--RVIITGSSD-----STV   77 (293)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE--ECCCSSCEEEEECCS--SEEEEEETT-----SCE
T ss_pred             eccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEE--EecCCCCEeeeeccc--ceeeccccc-----ccc
Confidence            445678899999765  789999999 99999999988665443  457888888888854  467788877     999


Q ss_pred             EEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeE---EEeccCCCcceEEEccCCCceEEEE
Q 015198          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLH---QIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      ++|++..+....................+.++.  .++.+.+|+........   .+..+..  .+..+.+.+.  .++ 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~--~~~-  152 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA--AVNVVDFDDK--YIV-  152 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS--CEEEEEEETT--EEE-
T ss_pred             cccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccc--ccccceeccc--ccc-
Confidence            999999998887777444443334444444444  78999999997654332   3333443  4444555443  233 


Q ss_pred             ecCCCCeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeC
Q 015198          192 PGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (411)
Q Consensus       192 ~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (411)
                      +++.|+.|++|+.. .+.+..+.++...+..+.++  +.+|++++.|+. |++||+++.+.+..+..  +...+..  ++
T Consensus       153 ~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~v~~--~~  225 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRC--IR  225 (293)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEE--EE
T ss_pred             cccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEecccceeeeeecc--cceeeee--cc
Confidence            34579999998876 46677888898888887774  568999999999 99999999999988877  6666765  45


Q ss_pred             CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCccccccc
Q 015198          271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW  350 (411)
Q Consensus       271 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (411)
                      +++.+|++++.||.|++||+.+..........                                               .
T Consensus       226 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-----------------------------------------------~  258 (293)
T d1p22a2         226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT-----------------------------------------------L  258 (293)
T ss_dssp             CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTT-----------------------------------------------T
T ss_pred             ccceEEEEEcCCCEEEEEECCCCccccccCCc-----------------------------------------------e
Confidence            67889999999999999999987654311111                                               1


Q ss_pred             ceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEE
Q 015198          351 SFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCS  386 (411)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~  386 (411)
                      ....+.-+.+.+..++|.+ ..|++++.||.|++|+
T Consensus       259 ~~~~~~~H~~~V~~v~~d~-~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         259 CLRTLVEHSGRVFRLQFDE-FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEECCCSSCCCCEEECS-SCEEECCSSSEEEEEC
T ss_pred             eeEEecCCCCCEEEEEEcC-CEEEEEecCCEEEEeC
Confidence            1123333344555677754 6799999999999994

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=1.1e-26  Score=207.33  Aligned_cols=238  Identities=13%  Similarity=0.138  Sum_probs=177.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceE-EeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETF-RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ..+|...|++++|+|++++++++.|+.+++|+........ ......+...+..+.+++++..++++..      +.+++
T Consensus        51 ~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~------~~i~~  124 (299)
T d1nr0a2          51 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY------KHIAI  124 (299)
T ss_dssp             SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES------SEEEE
T ss_pred             cCCCCCcEEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccccccccccccccccccc------ccccc
Confidence            3579999999999999988777779999999986432111 1111134455677888888877777655      79999


Q ss_pred             EECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEE-EeccCCCcceEEEccCCCceEEEEecC
Q 015198          119 WDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHHSSTSVLACPGL  194 (411)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (411)
                      |+...   .........+.+++|+|++.+++   .|+.|++||+++++.... ...|..  .+.++.+++++.+|++ ++
T Consensus       125 ~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~-~~  198 (299)
T d1nr0a2         125 YSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA--EITSVAFSNNGAFLVA-TD  198 (299)
T ss_dssp             EETTE---EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSS--CEEEEEECTTSSEEEE-EE
T ss_pred             ccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccc-cc
Confidence            99432   33444667788999999998887   689999999988765543 234555  4556666667778776 56


Q ss_pred             CCCeEEEEEcCCc----ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC-CCCCcceEEEEe
Q 015198          195 QRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIAL  269 (411)
Q Consensus       195 ~dg~i~i~~~~~~----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~  269 (411)
                      .++.|++|+....    ....+..|...|++++|+|++++|++|+.|+. |++||++++.....+.. ..+...+..+.|
T Consensus       199 ~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  277 (299)
T d1nr0a2         199 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS-VIVWNMNKPSDHPIIIKGAHAMSSVNSVIW  277 (299)
T ss_dssp             TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTCTTSCCEEETTSSTTSCEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccceEEEcCCCE-EEEEECCCCCcceEEEecCCCCCcEEEEEE
Confidence            8999999987542    23455678999999999999999999999999 99999988765443333 223456776655


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcc
Q 015198          270 SPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       270 spdg~~l~s~s~dg~I~vwd~~  291 (411)
                       +++++|++++.|++|+|||+.
T Consensus       278 -~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         278 -LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             -EETTEEEEEETTSCEEEEECC
T ss_pred             -CCCCEEEEEeCCCEEEEEecc
Confidence             567899999999999999984

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.4e-27  Score=213.92  Aligned_cols=252  Identities=12%  Similarity=0.014  Sum_probs=173.1

Q ss_pred             CccccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEe-ecCCCCEEEEEEeccCC-eEEEEecCCCCCCC
Q 015198           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRR-DLKSGGFRIVEMLFRCN-ILALVGAGDNSQYP  112 (411)
Q Consensus        36 ~~~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~  112 (411)
                      ..+...+|++.|++|+|+|++++||+|+ ||+|+|||++........ ....|...+.++.|+++ +..+++++.|    
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d----   78 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ----   78 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT----
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc----
Confidence            3456789999999999999999999999 999999999765432221 11257778999999875 6788888887    


Q ss_pred             CCeEEEEECCCCcEEEEEe-e-cCceeEEEEcCCe-EEEE--EcCeEEEEEcCCceeeEEE----eccCCC--cceEEEc
Q 015198          113 PTKVIIWDDHQSRCIGEFA-F-RSDVRSVKLSRDR-IVVV--LEHKIYVYSFVDLKLLHQI----ETLANL--RGLCCLS  181 (411)
Q Consensus       113 d~~i~vwd~~~~~~~~~~~-~-~~~i~~~~~~~~~-~~~~--~dg~i~iwd~~~~~~~~~~----~~~~~~--~~~~~~~  181 (411)
                       +.|++|++..+....... + ........+.++. .++.  .++.+++||++.+......    ..+...  .....+.
T Consensus        79 -~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          79 -GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             -SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             -cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence             999999998887776665 2 2333333333333 3333  6999999998654333222    222211  1233344


Q ss_pred             cCCCceEEEEecCCCCeEEEEEcCCcc----eEEEeccccceeEEEe-cCCCCEEEEEcCCCeEEEEEECCCCce-----
Q 015198          182 HHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINAHDSHIACFTL-TLDGLLLATASTRGTLIRIFNTVDGTR-----  251 (411)
Q Consensus       182 ~~~~~~~l~~~g~~dg~i~i~~~~~~~----~~~~~~~~~~i~~l~~-sp~g~~l~s~s~dg~~I~vwd~~~~~~-----  251 (411)
                      ...  ..++. ++.|+.|++|+.....    ......+...+.+..+ ..++..+++++.||. +.+|++.....     
T Consensus       158 ~~~--~~~~~-~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~v~~~~~~~~~~~~~  233 (342)
T d1yfqa_         158 TNS--SRLIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             ECS--SEEEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTCT
T ss_pred             ccC--Cceee-ecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCe-EEEEEecCCcceeecc
Confidence            433  44544 5689999999876422    2222334445555554 456789999999999 99998764321     


Q ss_pred             -EEEEe-------CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          252 -LQEVR-------RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       252 -~~~~~-------~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                       ...+.       ...|...|++++|+|++++|++|+.||.|+|||++++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l  286 (342)
T d1yfqa_         234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEE
Confidence             11111       1124557899999999999999999999999999988754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.9e-25  Score=201.51  Aligned_cols=237  Identities=13%  Similarity=0.185  Sum_probs=181.4

Q ss_pred             cCCCCEEE-EEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE--EcCeEEEEE
Q 015198           83 LKSGGFRI-VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYS  158 (411)
Q Consensus        83 ~~~~~~~~-~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~dg~i~iwd  158 (411)
                      |++|...+ .++.++  +.+|++|+.|     +.|+|||+.+++++.++. |...|.+++|++++.++.  .|+.|++|+
T Consensus         8 L~GH~~~vitc~~~~--~~~l~tgs~D-----g~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           8 LRGHMTSVITCLQFE--DNYVITGADD-----KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EECCSSSCEEEEEEE--TTEEEEEETT-----TEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEE
T ss_pred             ECCcCCCcEEEEEEC--CCEEEEEeCC-----CeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccc
Confidence            44666554 456665  4578888887     999999999999999998 999999999999887666  799999999


Q ss_pred             cCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC--------------------------------
Q 015198          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--------------------------------  206 (411)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--------------------------------  206 (411)
                      +...+..................+.+++..+++ ++.|+.|++|+...                                
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT-GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEE-EETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             ccccccccccccccccccccccccccccceeee-ecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            988887766655554444455555556566554 45677777766432                                


Q ss_pred             --------------------------------cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEE
Q 015198          207 --------------------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (411)
Q Consensus       207 --------------------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (411)
                                                      +.+....++...+.++.|+|++.++++++.|+. |++||++++..+..
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~~  238 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENGELMYT  238 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTTCCEEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccce-EEeeeccccccccc
Confidence                                            122233456667888999999999999999999 99999999999999


Q ss_pred             EeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCc
Q 015198          255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSS  334 (411)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (411)
                      +..  |...|.+++|++  ++|++++.||.|++||++++.+..                                     
T Consensus       239 ~~~--h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-------------------------------------  277 (355)
T d1nexb2         239 LQG--HTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF-------------------------------------  277 (355)
T ss_dssp             ECC--CSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE-------------------------------------
T ss_pred             ccc--cccccccccccc--ceeeeeecccccccccccccceec-------------------------------------
Confidence            988  888999999864  789999999999999998765321                                     


Q ss_pred             ccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEec
Q 015198          335 LSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~  389 (411)
                                         ..+. .....++++++++.++++++||.|++|++..
T Consensus       278 -------------------~~~~-~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~t  312 (355)
T d1nexb2         278 -------------------SYHH-TNLSAITTFYVSDNILVSGSENQFNIYNLRS  312 (355)
T ss_dssp             -------------------EEEC-TTCCCCCEEEECSSEEEEEETTEEEEEETTT
T ss_pred             -------------------cccc-CCceEEEEEcCCCCEEEEEeCCEEEEEECCC
Confidence                               1111 1223345677788899999999999998764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.6e-24  Score=197.71  Aligned_cols=191  Identities=12%  Similarity=-0.015  Sum_probs=155.1

Q ss_pred             EEEEEcC-CCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcE
Q 015198           48 ISVSWNQ-DYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (411)
Q Consensus        48 ~~l~~s~-~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~  126 (411)
                      ..-.||| ||+++|+++.|.|.+|+++.... ..  + .|...+.++.|+|++..++.++.+   ....|++||+++++.
T Consensus         6 ~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~-~~--~-~~~~~v~~~~~spDg~~l~~~~~~---~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYV-LK--V-PEPLRIRYVRRGGDTKVAFIHGTR---EGDFLGIYDYRTGKA   78 (360)
T ss_dssp             GEEEEEECGGGCEEEEETTEEEEECTTSSBE-EE--C-SCCSCEEEEEECSSSEEEEEEEET---TEEEEEEEETTTCCE
T ss_pred             hcccccCCCCCEEEEEECCeEEEEECCCCcE-EE--c-cCCCCEEEEEECCCCCEEEEEEcC---CCCEEEEEECCCCcE
Confidence            4567999 99999999999999999986432 22  3 567788999999999887765543   114799999999887


Q ss_pred             EEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe---------cC
Q 015198          127 IGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP---------GL  194 (411)
Q Consensus       127 ~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------g~  194 (411)
                      .....|...|.+++|+|++++++   .++.+++|++.+++....+..+......+++  ++++.+|+++         +.
T Consensus        79 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--spdg~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          79 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI--SDNSRFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE--CTTSCEEEEEEEECSSTTCSC
T ss_pred             EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhh--ccceeeeeeeccccccceeec
Confidence            77666999999999999999888   6899999999999988888877765555554  5566777753         34


Q ss_pred             CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC
Q 015198          195 QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (411)
Q Consensus       195 ~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (411)
                      .++.+++|+........+..+...+..++|+|+|++|++++.++. +++||...
T Consensus       157 ~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~-~~~~d~~~  209 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVV  209 (360)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSS
T ss_pred             cccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCc-eEcccccc
Confidence            566788899888877777788888999999999999999999999 99998654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-22  Score=182.27  Aligned_cols=238  Identities=16%  Similarity=0.237  Sum_probs=171.6

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEe----------------------
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEML----------------------   94 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~----------------------   94 (411)
                      ....+|.+.|.+++|+++  +|++|+ |+.+++|+............  ....+....                      
T Consensus        51 ~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  126 (342)
T d2ovrb2          51 RTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYG--HTSTVRCMHLHEKRVVSGSRDATLRVWDIET  126 (342)
T ss_dssp             EECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEETTEEEEEETTSEEEEEESSS
T ss_pred             EEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccc--cceeEeeeecccccccccccceeEEEeeccc
Confidence            456789999999999975  899999 99999999875433322211  111110000                      


Q ss_pred             ----------------ccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEE
Q 015198           95 ----------------FRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYV  156 (411)
Q Consensus        95 ----------------~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~i  156 (411)
                                      .......++.++.+     +.|++||....+.+..+. |...+..+.+++.....+ .|+.|++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~  201 (342)
T d2ovrb2         127 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYD-----FMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV  201 (342)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSCEEEEETT-----SCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred             ccceeeeecccccceeeccccceeeeecCC-----CeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEE
Confidence                            01111223344444     899999988888887776 666666666655433333 7999999


Q ss_pred             EEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-ceEEEec---cccceeEEEecCCCCEEE
Q 015198          157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINA---HDSHIACFTLTLDGLLLA  232 (411)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~---~~~~i~~l~~sp~g~~l~  232 (411)
                      ||++.++.+..+..|..  .+.+++++++  +|++ |+.|+.|++|+.... ....+..   |...+.++.+  ++++++
T Consensus       202 ~d~~~~~~~~~~~~~~~--~v~~~~~~~~--~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  274 (342)
T d2ovrb2         202 WDVETGNCIHTLTGHQS--LTSGMELKDN--ILVS-GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVI  274 (342)
T ss_dssp             EETTTCCEEEEECCCCS--CEEEEEEETT--EEEE-EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEE
T ss_pred             eecccceeeeEeccccc--ceeEEecCCC--EEEE-EcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeE
Confidence            99999999998888776  4456666654  5554 668999999987654 4444543   4556666666  457999


Q ss_pred             EEcCCCeEEEEEECCCCceEEEEeC---CCCCcceEEEEeCCCCCEEEEEeCCCc----EEEEEccc
Q 015198          233 TASTRGTLIRIFNTVDGTRLQEVRR---GVDRAEIYSIALSPNVQWLAVASDKGT----VHIFSLRV  292 (411)
Q Consensus       233 s~s~dg~~I~vwd~~~~~~~~~~~~---~~~~~~v~~l~~spdg~~l~s~s~dg~----I~vwd~~~  292 (411)
                      +|+.||. |++||+++++.++++..   ..|...|++++|+|++.+|++|+.||+    |++||++.
T Consensus       275 s~s~Dg~-i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         275 TSSDDGT-VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEETTSE-EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEcCCCE-EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9999999 99999999999888753   125568999999999999999999985    99999874

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.2e-23  Score=182.77  Aligned_cols=228  Identities=14%  Similarity=0.156  Sum_probs=173.1

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEE
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~v  118 (411)
                      ..+|...|.++++++++. +++++ |+++++|++...+      + .  ..+..+.+.+++..++.+..      +.+.+
T Consensus        42 ~~~h~~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~~~~------~-~--~~~~~~~~~~~~~~~~~~~~------~~~~~  105 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKAQE-YSSISWDDTLKVNGITKHE------F-G--SQPKVASANNDGFTAVLTND------DDLLI  105 (287)
T ss_dssp             ECCCCSCEEEEECCSTTC-CEEEETTTEEEETTEEEEE------C-S--SCEEEEEECSSSEEEEEETT------SEEEE
T ss_pred             CCCCCCCEEEEEecCCCe-EEEEeeccccccccccccc------c-c--cceeeeeeccCCceEEEeec------cccee
Confidence            468999999999998765 56666 9999999976421      1 1  22445667788887777665      78999


Q ss_pred             EECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEec-cCCCcceEEEccCCCceEEEEecCC
Q 015198          119 WDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTSVLACPGLQ  195 (411)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~  195 (411)
                      |+..+++.+..+.+...+.++..+.+...+.  .++.+++|++...+....+.. +..  .+.++++++++.+|++ |+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~-g~~  182 (287)
T d1pgua2         106 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA--KPSYISISPSETYIAA-GDV  182 (287)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS--CEEEEEECTTSSEEEE-EET
T ss_pred             eeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCC--ceeEEEeccCcccccc-ccc
Confidence            9999999999988777777666655544444  346799999977665555433 333  3556666777778875 668


Q ss_pred             CCeEEEEEcCCcceE--EEeccccceeEEEecCC----------CCEEEEEcCCCeEEEEEECCCC-ceEEEEeCCCCCc
Q 015198          196 RGQVRIEHFGLNMIK--LINAHDSHIACFTLTLD----------GLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRA  262 (411)
Q Consensus       196 dg~i~i~~~~~~~~~--~~~~~~~~i~~l~~sp~----------g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~  262 (411)
                      ||.|++|+.......  .+..|...|.+++|+|.          +.+|++|+.|+. |+|||++++ +.+..+.+  |..
T Consensus       183 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~~~~~~~~~~--h~~  259 (287)
T d1pgua2         183 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKALNA--HKD  259 (287)
T ss_dssp             TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEEETTS--STT
T ss_pred             cccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCCCeEEEEeCC--CCC
Confidence            999999998765432  35689999999999875          468999999999 999999774 45554555  888


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 015198          263 EIYSIALSPNVQWLAVASDKGTVHIFSL  290 (411)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~I~vwd~  290 (411)
                      .|++++|+|++ .|++++.|+.|++|++
T Consensus       260 ~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         260 GVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99999999986 5889999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=4.1e-23  Score=188.22  Aligned_cols=238  Identities=13%  Similarity=0.038  Sum_probs=174.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CC--cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT-SC--GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      .+|...|.+++|+|||++|++++ ++  .|++|+.++.+. ..  +..+...+..+.|+|++..+++++.+     +.++
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~--~~~~~~~v~~~~~spdg~~l~~~~~~-----~~~~  110 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EK--FEENLGNVFAMGVDRNGKFAVVANDR-----FEIM  110 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EE--CCCCCCSEEEEEECTTSSEEEEEETT-----SEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EE--eeCCCceEEeeeecccccccceeccc-----cccc
Confidence            47999999999999999998776 43  689999987443 22  34788889999999999999998887     9999


Q ss_pred             EEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-------------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccC
Q 015198          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH  183 (411)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (411)
                      +|++.+++....+. +...+.+++|+|++++++             .++.+++||+.+++...... +..  ......++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~--~~~~~~~s  187 (360)
T d1k32a3         111 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENS--HDYAPAFD  187 (360)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-SSS--BEEEEEEC
T ss_pred             cccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc-ccc--cccccccc
Confidence            99999999988887 788899999999999887             24579999998876654333 333  44556667


Q ss_pred             CCceEEEEecCCCCeEEEEEcCCc--------ceEEEec------------------------------------cccce
Q 015198          184 SSTSVLACPGLQRGQVRIEHFGLN--------MIKLINA------------------------------------HDSHI  219 (411)
Q Consensus       184 ~~~~~l~~~g~~dg~i~i~~~~~~--------~~~~~~~------------------------------------~~~~i  219 (411)
                      +++..|++. +.++.+.+|+....        ....+..                                    ..+..
T Consensus       188 pdg~~l~~~-s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (360)
T d1k32a3         188 ADSKNLYYL-SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY  266 (360)
T ss_dssp             TTSCEEEEE-ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE
T ss_pred             CCCCEEEEE-eCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce
Confidence            777888874 46777777654320        0011110                                    11112


Q ss_pred             eEEEecCCC-------------CEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEE
Q 015198          220 ACFTLTLDG-------------LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVH  286 (411)
Q Consensus       220 ~~l~~sp~g-------------~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~  286 (411)
                      ..+...+++             .++++++.++. |++||+.+++.. .+     .+.|.+++|+|||++|++++.||.|+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~-~~-----~~~v~~~~~SpDG~~l~~~~~Dg~i~  339 (360)
T d1k32a3         267 RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTRKVT-EV-----KNNLTDLRLSADRKTVMVRKDDGKIY  339 (360)
T ss_dssp             EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEE-EEEEETTTCCEE-EE-----EEEEEEEEECTTSCEEEEEETTSCEE
T ss_pred             eEeeecCCCceEEEEEecCCCeeEEEecCCCCE-EEEEECCCCeEE-Ee-----cCCcCEEEECCCCCEEEEEECCCeEE
Confidence            222222222             23455566777 999999887653 22     33589999999999999999999999


Q ss_pred             EEEccccccCC
Q 015198          287 IFSLRVRVVGE  297 (411)
Q Consensus       287 vwd~~~~~~~~  297 (411)
                      +||+++++...
T Consensus       340 v~d~~~~~~~~  350 (360)
T d1k32a3         340 TFPLEKPEDER  350 (360)
T ss_dssp             EEESSCTTSCE
T ss_pred             EEECCCCCcce
Confidence            99999998654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.7e-22  Score=173.98  Aligned_cols=229  Identities=13%  Similarity=0.282  Sum_probs=171.7

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        38 ~~~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ..+.+|.+.|++++|  ++++|++|+ |+.|++|++..........  ...............  ++++..+     +.+
T Consensus        49 ~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~-----~~~  117 (293)
T d1p22a2          49 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEAVLHLRFNNGM--MVTCSKD-----RSI  117 (293)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC--CCCSCEEEEECCTTE--EEEEETT-----SCE
T ss_pred             EEEecCCCCEeeeec--ccceeeccccccccccccccccccccccc--ccccccccccccccc--eeecccc-----cce
Confidence            456789999999987  577999999 9999999998766544443  233333333333332  3333444     999


Q ss_pred             EEEECCCCcEEEE---Ee-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          117 IIWDDHQSRCIGE---FA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       117 ~vwd~~~~~~~~~---~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      .+|+.........   +. +...+..+.+.+...... .|+.|++||+++++.+..+..+...  +..+.+++.  .+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~--v~~~~~~~~--~l~~  193 (293)
T d1p22a2         118 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG--IACLQYRDR--LVVS  193 (293)
T ss_dssp             EEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEEETT--EEEE
T ss_pred             eEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcccccc--cccccCCCC--eEEE
Confidence            9999877654332   22 678888899988877766 7999999999999999998877664  445555543  4554


Q ss_pred             ecCCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCC---------CceEEEEeCCCCC
Q 015198          192 PGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD---------GTRLQEVRRGVDR  261 (411)
Q Consensus       192 ~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~---------~~~~~~~~~~~~~  261 (411)
                       ++.||.|++|+... ..+..+.+|...+..  +++++.+|++++.||. |++||+..         ...+..+.+  |.
T Consensus       194 -~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~--H~  267 (293)
T d1p22a2         194 -GSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLVE--HS  267 (293)
T ss_dssp             -EETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEECC--CS
T ss_pred             -ecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCE-EEEEECCCCccccccCCceeeEEecC--CC
Confidence             66899999988765 556667777777765  4567889999999999 99999743         346677777  88


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015198          262 AEIYSIALSPNVQWLAVASDKGTVHIFS  289 (411)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~dg~I~vwd  289 (411)
                      +.|++++|+  +++|++++.||+|+|||
T Consensus       268 ~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         268 GRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            899999994  57899999999999997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=2.3e-20  Score=165.46  Aligned_cols=239  Identities=9%  Similarity=0.018  Sum_probs=184.8

Q ss_pred             CCCeEEEEEcCCCCEEEE-Ee-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE-EEEecCCCCCCCCCeEEEEE
Q 015198           44 EIELISVSWNQDYGCFAA-GT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~-g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~d~~i~vwd  120 (411)
                      ...+..++|+|||++|++ +. ++.|++||+.+.+.......   ......+.+++++. .++++..+     +.+.+|+
T Consensus        31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  102 (301)
T d1l0qa2          31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---GSSPQGVAVSPDGKQVYVTNMAS-----STLSVID  102 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec---ccccccccccccccccccccccc-----ceeeecc
Confidence            345789999999998865 44 89999999998665554432   22356677777664 44555555     8999999


Q ss_pred             CCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCC
Q 015198          121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (411)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (411)
                      ..+++.+..+.+.....++.++|++..++    .++.+.+|+..+++.+..+..+..   ...+.+++++..+++++...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  179 (301)
T d1l0qa2         103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS---PKGIAVTPDGTKVYVANFDS  179 (301)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEETTT
T ss_pred             cccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCC---ceEEEeeccccceeeecccc
Confidence            99999999999888889999999998776    578899999999998888876543   34455566666666666666


Q ss_pred             CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEc---CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCC
Q 015198          197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS---TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (411)
Q Consensus       197 g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s---~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (411)
                      +.+.++................+..++|++++..++.+.   .++. |++||+.+++.+..+..   ...+.+++|+|||
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~-v~v~D~~t~~~~~~~~~---~~~~~~va~spdg  255 (301)
T d1l0qa2         180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPV---GPDPAGIAVTPDG  255 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEEC---CSSEEEEEECTTS
T ss_pred             cccccccccceeeeecccccCCcceeeccccccccccccccceeee-eeeeecCCCeEEEEEcC---CCCEEEEEEeCCC
Confidence            777777777666555555566678899999999876654   3467 99999999999888875   3468999999999


Q ss_pred             CEE-EEEeCCCcEEEEEccccccCC
Q 015198          274 QWL-AVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       274 ~~l-~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      ++| ++++.|++|++||+++++...
T Consensus       256 ~~l~va~~~~~~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         256 KKVYVALSFCNTVSVIDTATNTITA  280 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCeEEE
Confidence            987 567789999999999998653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=6e-22  Score=183.73  Aligned_cols=253  Identities=14%  Similarity=0.127  Sum_probs=164.5

Q ss_pred             CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc-------EEEEEeecCceeEEE------EcCC-eEEEE
Q 015198           84 KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-------CIGEFAFRSDVRSVK------LSRD-RIVVV  149 (411)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~-------~~~~~~~~~~i~~~~------~~~~-~~~~~  149 (411)
                      ++|...|.++.+.++  ++++++.|     ++|++||..+.+       ......+...+..+.      .+.. ..+++
T Consensus        11 ~~H~~~I~~v~~~~~--~l~S~S~D-----~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_          11 KAHDADIFSVSACNS--FTVSCSGD-----GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             SCSSSCEEEEEECSS--EEEEEETT-----SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             CcccCccEEEEEeCC--EEEEEECC-----CeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            478888888887765  56677777     999999976543       223232433332222      2222 23333


Q ss_pred             ---EcCeEEEEEcCCceeeEEE-----e-----ccCCCcceEEEccCCC---ceEEEEecCCCCeEEEEEcCCc------
Q 015198          150 ---LEHKIYVYSFVDLKLLHQI-----E-----TLANLRGLCCLSHHSS---TSVLACPGLQRGQVRIEHFGLN------  207 (411)
Q Consensus       150 ---~dg~i~iwd~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~---~~~l~~~g~~dg~i~i~~~~~~------  207 (411)
                         .||.|++|++........+     .     .+......+++.+...   +.++++ ++.||.+++|+....      
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA-TDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE-EETTSCEEEEEEESSSSHHHH
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEE-EcCCCcEEEEEeecCCcccce
Confidence               5999999998543221111     1     1122233445555432   345555 558999999986421      


Q ss_pred             ------c-------eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCC----CCCcceEEEEeC
Q 015198          208 ------M-------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG----VDRAEIYSIALS  270 (411)
Q Consensus       208 ------~-------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~----~~~~~v~~l~~s  270 (411)
                            .       ......+...+.+++|+|++ +|++|+.|+. |+|||+.+++.+..+...    .|...|++++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~-i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT-VQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE-EEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCc-EEEEeecccccccccccccccccccceEEEcccc
Confidence                  0       11112345668999999998 8999999999 999999999988776532    277899999999


Q ss_pred             CCCCEEEEEeCCCc---EEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccc
Q 015198          271 PNVQWLAVASDKGT---VHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (411)
Q Consensus       271 pdg~~l~s~s~dg~---I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (411)
                      |||++|++|+.|++   |++||+++++....+.....                                           
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~-------------------------------------------  277 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH-------------------------------------------  277 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------------------------------------------
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccc-------------------------------------------
Confidence            99999999999875   99999999876532221100                                           


Q ss_pred             cccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                      .......+.-+.+.+..++|+|+ +.|++++.||.|++|++..
T Consensus       278 ~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         278 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            00000011112356788999998 7788888899999999875

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=4.1e-21  Score=180.01  Aligned_cols=251  Identities=8%  Similarity=-0.039  Sum_probs=175.6

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec---CCCCEEEEEEeccCCeEEE-EecCCCCCCCCC
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCNILAL-VGAGDNSQYPPT  114 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~  114 (411)
                      +..| ..+..++|+|||++|++++ |+.|++||+++.+......+   ..+...+.+..|+|++..+ +++..+     +
T Consensus        58 l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~-----~  131 (426)
T d1hzua2          58 IDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP-----P  131 (426)
T ss_dssp             EECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES-----S
T ss_pred             EeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC-----C
Confidence            3344 4689999999999999999 99999999998765443322   2334455667788888765 454455     9


Q ss_pred             eEEEEECCCCcEEEEEe-e-------------------------------------------------------cCceeE
Q 015198          115 KVIIWDDHQSRCIGEFA-F-------------------------------------------------------RSDVRS  138 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~-------------------------------------------------------~~~i~~  138 (411)
                      .+++||..+++++..+. +                                                       ...+..
T Consensus       132 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  211 (426)
T d1hzua2         132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD  211 (426)
T ss_dssp             EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEE
T ss_pred             eEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEe
Confidence            99999988877655443 1                                                       122334


Q ss_pred             EEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCC--CcceEEEccCCCceEEEEecCCCCeEEEEEcCC------
Q 015198          139 VKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLAN--LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL------  206 (411)
Q Consensus       139 ~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~------  206 (411)
                      +.++|+++++.    .+..+.+++..+++.+..+.....  ......+.....+...+.....++.+.+|....      
T Consensus       212 ~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~  291 (426)
T d1hzua2         212 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY  291 (426)
T ss_dssp             EEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTT
T ss_pred             eeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccc
Confidence            55666665554    356677777777777666643322  122333444444555555566788888765432      


Q ss_pred             --cceEEEeccccceeEEEecCCCCEEEE-------EcCCCeEEEEEECCCCceEEEEeC-------CCCCcceEEEEeC
Q 015198          207 --NMIKLINAHDSHIACFTLTLDGLLLAT-------ASTRGTLIRIFNTVDGTRLQEVRR-------GVDRAEIYSIALS  270 (411)
Q Consensus       207 --~~~~~~~~~~~~i~~l~~sp~g~~l~s-------~s~dg~~I~vwd~~~~~~~~~~~~-------~~~~~~v~~l~~s  270 (411)
                        +....+.+|...+..++|+|+|++|++       ++.+++ |+|||+.+++...++..       ..+...|.+++||
T Consensus       292 ~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fS  370 (426)
T d1hzua2         292 AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN  370 (426)
T ss_dssp             BTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEEC
T ss_pred             cceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE-EEEEECCCCCcCeEEeccchhcccCCCCccEEEEEEC
Confidence              567788999999999999999999994       456788 99999999987766532       1245579999999


Q ss_pred             CCCCEEEEE-----eCCCcEEEEEccccccCC
Q 015198          271 PNVQWLAVA-----SDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       271 pdg~~l~s~-----s~dg~I~vwd~~~~~~~~  297 (411)
                      |||++|+.+     +.+|.|+|||.++++...
T Consensus       371 pDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~  402 (426)
T d1hzua2         371 KRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA  402 (426)
T ss_dssp             SSSSEEEEEECCCTTSCCEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEEecCCCCCCeEEEEECCCCeEEE
Confidence            999977543     357889999999998654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1.5e-19  Score=160.15  Aligned_cols=261  Identities=14%  Similarity=0.056  Sum_probs=193.0

Q ss_pred             EEEE-Ee-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEE-EecCCCCCCCCCeEEEEECCCCcEEEEEeecC
Q 015198           58 CFAA-GT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (411)
Q Consensus        58 ~la~-g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~  134 (411)
                      |+.+ +. +++|.|||+++.+.+....+   ......+.++|++..+ +++..+     +.|++||+.+++.+..+....
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~---g~~p~~va~spdG~~l~v~~~~~-----~~i~v~d~~t~~~~~~~~~~~   74 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPV---GSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAGS   74 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEEC---CCCceEEEEeCCCCEEEEEECCC-----CEEEEEECCCCceeeeeeccc
Confidence            4443 44 89999999998765555443   2335678899998654 566665     999999999999999998767


Q ss_pred             ceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceE
Q 015198          135 DVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK  210 (411)
Q Consensus       135 ~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~  210 (411)
                      .+..+.+++++..++    .++.+.+|+..+++....+..+..   ...+.+++++..+++++..++.+.+|+.......
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  151 (301)
T d1l0qa2          75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS---PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cccccccccccccccccccccceeeecccccceeeeecccccc---ceEEEeecCCCeeeeeeccccceeeeecccccee
Confidence            789999999987665    578999999999998888876553   3455566677777777778889999877665544


Q ss_pred             EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeC---CCcEEE
Q 015198          211 LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD---KGTVHI  287 (411)
Q Consensus       211 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~I~v  287 (411)
                      ....+...+..++++|++..+++++.+...+.+|+....+....+..   ...+..++|++++..++++..   ++.|++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v  228 (301)
T d1l0qa2         152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSM  228 (301)
T ss_dssp             EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred             eecccCCCceEEEeeccccceeeecccccccccccccceeeeecccc---cCCcceeeccccccccccccccceeeeeee
Confidence            44445566788999999998887776644388888877777666663   456788999999998876543   467999


Q ss_pred             EEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEE
Q 015198          288 FSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAF  367 (411)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (411)
                      ||+.+++...                                                        ++.... ....++|
T Consensus       229 ~D~~t~~~~~--------------------------------------------------------~~~~~~-~~~~va~  251 (301)
T d1l0qa2         229 IDTGTNKITA--------------------------------------------------------RIPVGP-DPAGIAV  251 (301)
T ss_dssp             EETTTTEEEE--------------------------------------------------------EEECCS-SEEEEEE
T ss_pred             eecCCCeEEE--------------------------------------------------------EEcCCC-CEEEEEE
Confidence            9998886432                                                        233322 3456889


Q ss_pred             ccC-CEEEEEEe-CCcEEEEEEec
Q 015198          368 GSQ-NTVVIVSM-DGSFYRCSFDP  389 (411)
Q Consensus       368 ~~~-~~~~~~~~-dg~~~~~~~~~  389 (411)
                      +++ +.|++++. ||.|.+|.+..
T Consensus       252 spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         252 TPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTT
T ss_pred             eCCCCEEEEEECCCCeEEEEECCC
Confidence            999 55655554 79999997754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.1e-22  Score=180.98  Aligned_cols=241  Identities=9%  Similarity=-0.044  Sum_probs=158.4

Q ss_pred             cCCCCCCeEEEEEcCCC-CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           40 SDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g-~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ..+|.++|.+++|+|++ .+|++|+ |+.|++|++........... .+........+.++...+++++.+     +.++
T Consensus        52 ~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  125 (342)
T d1yfqa_          52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN-NEANLGICRICKYGDDKLIAASWD-----GLIE  125 (342)
T ss_dssp             EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS-CCCCSCEEEEEEETTTEEEEEETT-----SEEE
T ss_pred             ecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccc-cccccccccccccccccccccccc-----cccc
Confidence            34699999999999874 5788888 99999999987665544433 222222333334444455555655     9999


Q ss_pred             EEECCCCcEEEEEe-------ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEec-cCCCcceEEEccC-CC
Q 015198          118 IWDDHQSRCIGEFA-------FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHH-SS  185 (411)
Q Consensus       118 vwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~-~~  185 (411)
                      +||++.+.......       .......+.+.+.+..++   .|+.|++||+...+....... ............. .+
T Consensus       126 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (342)
T d1yfqa_         126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE  205 (342)
T ss_dssp             EECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG
T ss_pred             eeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCC
Confidence            99976543322221       122333444444443333   799999999976654332211 1111122222222 23


Q ss_pred             ceEEEEecCCCCeEEEEEcCCcc-------eE---------EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC
Q 015198          186 TSVLACPGLQRGQVRIEHFGLNM-------IK---------LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (411)
Q Consensus       186 ~~~l~~~g~~dg~i~i~~~~~~~-------~~---------~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (411)
                      +..++ +++.||.+.+|......       ..         ....|...+++++|+|++++|++|+.||. |++||++++
T Consensus       206 ~~~~~-~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~~~  283 (342)
T d1yfqa_         206 QEGYA-CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTR  283 (342)
T ss_dssp             GCEEE-EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTT
T ss_pred             CCEEE-eecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE-EEEEECCCC
Confidence            34444 46689999998765311       11         12356678999999999999999999999 999999999


Q ss_pred             ceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      +.+.++... +  .+..++|+|++++|++++.|+.+++|...
T Consensus       284 ~~l~~~~~~-~--~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         284 KKIKNFAKF-N--EDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEEEECCCC-S--SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             cEEEEecCC-C--CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            998887642 3  45567788899999999999988887543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=7.9e-20  Score=171.17  Aligned_cols=230  Identities=11%  Similarity=0.027  Sum_probs=157.0

Q ss_pred             EEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEE--Ee---
Q 015198           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGE--FA---  131 (411)
Q Consensus        58 ~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~--~~---  131 (411)
                      ++++.. ||.|+|||+.+++.+....  .+ ..+..+.|+||+..+++++.|     +.|++||+.+++....  +.   
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~--~g-~~~~~vafSPDGk~l~~~~~d-----~~v~vwd~~t~~~~~~~~i~~~~  105 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVID--TG-YAVHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTKVAEIKIGI  105 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEE--CC-SSEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEEEEEEECCS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe--CC-CCeeEEEECCCCCEEEEEeCC-----CCEEEEEccCCceeEEEEEeCCC
Confidence            345566 9999999999976655544  33 347789999999999988887     9999999998875443  33   


Q ss_pred             -ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCC---------CceEEEEecCCCC
Q 015198          132 -FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS---------STSVLACPGLQRG  197 (411)
Q Consensus       132 -~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~g~~dg  197 (411)
                       +...+.++.|+|||++++    .++.+.+||..+++++..+..+...+....+.+.+         ++..++.+....+
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~  185 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  185 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCC
Confidence             344556667788998765    68999999999999888887665443333333333         3333333333334


Q ss_pred             eEEEEEcCC-c-ceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCce------------------------
Q 015198          198 QVRIEHFGL-N-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR------------------------  251 (411)
Q Consensus       198 ~i~i~~~~~-~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~------------------------  251 (411)
                      .+.++.... . .......+...+..+.|+|++++++++..+...+.+++..+++.                        
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  265 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCC
Confidence            444432222 1 12233456777889999999998877765443366776655433                        


Q ss_pred             ------------------------------EEEEeCCCCCcceEEEEeCCCCCEEEE-------EeCCCcEEEEEccccc
Q 015198          252 ------------------------------LQEVRRGVDRAEIYSIALSPNVQWLAV-------ASDKGTVHIFSLRVRV  294 (411)
Q Consensus       252 ------------------------------~~~~~~~~~~~~v~~l~~spdg~~l~s-------~s~dg~I~vwd~~~~~  294 (411)
                                                    ...+.+  |...+..++|+||+++|++       +..|++|+|||+.+++
T Consensus       266 ~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g--~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~  343 (426)
T d1hzua2         266 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  343 (426)
T ss_dssp             EEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC--SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             ceEEeccCCCceEEEeeccccccccccceEeEEEec--CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCC
Confidence                                          233333  5556888999999999995       4567899999999988


Q ss_pred             cCC
Q 015198          295 VGE  297 (411)
Q Consensus       295 ~~~  297 (411)
                      +..
T Consensus       344 ~~~  346 (426)
T d1hzua2         344 AKY  346 (426)
T ss_dssp             SCC
T ss_pred             cCe
Confidence            653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=7.6e-20  Score=165.18  Aligned_cols=237  Identities=8%  Similarity=-0.037  Sum_probs=161.1

Q ss_pred             EEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEE-EEecCCCCCCCCCeEEEEECCCCcEE
Q 015198           50 VSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILA-LVGAGDNSQYPPTKVIIWDDHQSRCI  127 (411)
Q Consensus        50 l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~~~d~~i~vwd~~~~~~~  127 (411)
                      ++|++++++|++++ ++.|.+||+++.+......+ .+......+.|+||+.. ++++..+     +.|.+||+.+++.+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~-~~~~~p~~l~~spDG~~l~v~~~~~-----~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc-CCCCCcceEEECCCCCEEEEEECCC-----CcEEEEeCccCeee
Confidence            57899999999999 99999999998765544444 34445668889999765 4666666     99999999999998


Q ss_pred             EEEeec-------CceeEEEEcCCeEEEE---------------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCC
Q 015198          128 GEFAFR-------SDVRSVKLSRDRIVVV---------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (411)
Q Consensus       128 ~~~~~~-------~~i~~~~~~~~~~~~~---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (411)
                      ..+...       ..+..++|+|||..+.               .+..+.+|+..+++....+..+..+.....+...++
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  155 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence            887622       3466889999987665               256788898876554332221111100001111111


Q ss_pred             ceEEE--------------------------------------EecCCCC-------------------------eEEEE
Q 015198          186 TSVLA--------------------------------------CPGLQRG-------------------------QVRIE  202 (411)
Q Consensus       186 ~~~l~--------------------------------------~~g~~dg-------------------------~i~i~  202 (411)
                      +.+++                                      ..+..++                         .+.+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             SCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             CEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            11111                                      1111111                         22223


Q ss_pred             EcCCcc--eEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEe
Q 015198          203 HFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS  280 (411)
Q Consensus       203 ~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  280 (411)
                      +.....  ...+..|...+..+.+++++.+++.... +. |++||+.+++.+..+..   ...+.+++|+|||++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-v~v~d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~  310 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NR-LAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGG  310 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SE-EEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEES
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-Ce-EEEEECCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEe
Confidence            322221  2233456777888888988887776654 56 99999999999888874   34689999999999999999


Q ss_pred             CCCcEEEEEccccccCC
Q 015198          281 DKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       281 ~dg~I~vwd~~~~~~~~  297 (411)
                      .|+.|+|||+++++...
T Consensus       311 ~d~~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         311 TFNDLAVFNPDTLEKVK  327 (346)
T ss_dssp             BSSEEEEEETTTTEEEE
T ss_pred             CCCcEEEEECccCCEEE
Confidence            99999999999998764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=6e-19  Score=158.57  Aligned_cols=249  Identities=10%  Similarity=-0.009  Sum_probs=177.4

Q ss_pred             CCCCCeEEEEEcCCCCEEE-EEe-CCcEEEEecCCCcceEEeecCCCCE---EEEEEeccCCeEEEEecCCCC-------
Q 015198           42 VDEIELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGF---RIVEMLFRCNILALVGAGDNS-------  109 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la-~g~-dg~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s~~~d~-------  109 (411)
                      .+...+.+++|+|||++++ +++ ++.|.+||+.+++............   .+..+.+++++..++.+..+.       
T Consensus        31 ~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T d1pbyb_          31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeec
Confidence            3455678999999999885 455 8999999999877666554422222   223567788776555443210       


Q ss_pred             CCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCC---
Q 015198          110 QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS---  185 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---  185 (411)
                      ...+..+.+||..+++.+..+.....+..+.|+|++.+++ .++.+.+||..+++....+..+..... ..+.++..   
T Consensus       111 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  189 (337)
T d1pbyb_         111 EVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE-TYAQPDVLAVW  189 (337)
T ss_dssp             EECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTT-TBCCCBCCCCC
T ss_pred             cccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCcccc-ceecCCcceee
Confidence            0023789999999999999999888899999999998887 788899999999998887765432211 11111100   


Q ss_pred             ------ceE--EEE----------ecCCCCeEEEEEcCCcce--EEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEE
Q 015198          186 ------TSV--LAC----------PGLQRGQVRIEHFGLNMI--KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (411)
Q Consensus       186 ------~~~--l~~----------~g~~dg~i~i~~~~~~~~--~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (411)
                            +..  ...          .+..++.+.+|+......  ..+..+...+..+.+++++.+++.+  ++. |++||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-i~v~d  266 (337)
T d1pbyb_         190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFD  266 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEE
T ss_pred             ccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--ccc-EEEEE
Confidence                  000  000          112234455555544332  2345667778889999999988776  477 99999


Q ss_pred             CCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCC
Q 015198          246 TVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      +.+++.+..+.   +...+.+++|+|||++|++++.|++|+|||+++++...
T Consensus       267 ~~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         267 LEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             TTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             CCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            99999998887   45578999999999999999999999999999988664

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=8.1e-19  Score=164.34  Aligned_cols=236  Identities=11%  Similarity=-0.015  Sum_probs=156.6

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec---CCCCEEEEEEeccCCeEE-EEecCCCCCCCCCeEEEE
Q 015198           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCNILA-LVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-l~s~~~d~~~~d~~i~vw  119 (411)
                      ..+..++|+|||++|++++ |+.|++||+.+.+......+   ..+...+....|+||+.. ++++..+     +.|++|
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~-----~~v~i~  136 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP-----PQYVIM  136 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET-----TEEEEE
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC-----CeEEEE
Confidence            4699999999999999999 99999999987654333322   123334455678889865 4677666     999999


Q ss_pred             ECCCCcEEEEEe------------ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccC
Q 015198          120 DDHQSRCIGEFA------------FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH  183 (411)
Q Consensus       120 d~~~~~~~~~~~------------~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (411)
                      |..+++.+..+.            +......+.+++++..++    .++.|.+||..+++.......+... ....+.++
T Consensus       137 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~-~~~~~~~s  215 (432)
T d1qksa2         137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER-FLHDGGLD  215 (432)
T ss_dssp             ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS-SEEEEEEC
T ss_pred             eCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccC-ccccceEC
Confidence            999999988765            234566788999887655    5789999999887755444333221 34566777


Q ss_pred             CCceEEEEecCCCCeEEEEEcCCcceE-EEe-----ccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEEEEe
Q 015198          184 SSTSVLACPGLQRGQVRIEHFGLNMIK-LIN-----AHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVR  256 (411)
Q Consensus       184 ~~~~~l~~~g~~dg~i~i~~~~~~~~~-~~~-----~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~  256 (411)
                      |++.++++++..++.+.+++....... .+.     .|........+...+...++.. .++. |.+|+......    .
T Consensus       216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~-v~~~~~~~~~~----~  290 (432)
T d1qksa2         216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS-VALIGTDPEGH----P  290 (432)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSE-EEEEECCTTTC----T
T ss_pred             CCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCce-EEecccccccc----c
Confidence            788877776667778888776654433 222     1233334444444454444443 3667 88887655432    1


Q ss_pred             CCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      .  +...+....++|++..+++++.++..++|...+.
T Consensus       291 ~--~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~  325 (432)
T d1qksa2         291 D--NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL  325 (432)
T ss_dssp             T--TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT
T ss_pred             c--cccEEEEEEEcCCCCeEEEEecCCccceeecccC
Confidence            2  3445666666676666666666666667765543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=4.3e-18  Score=152.87  Aligned_cols=260  Identities=12%  Similarity=0.054  Sum_probs=178.3

Q ss_pred             CEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEE-EecCCCCCCCCCeEEEEECCCCcEEEEEee--
Q 015198           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGEFAF--  132 (411)
Q Consensus        57 ~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~--  132 (411)
                      ++|++++ |+.|+|||+++.+.+....+..+...+..+.++|++..+ +++..+     +.|.+||+.+++.+..+..  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~-----~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECCB
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecCC
Confidence            4788888 999999999987766655554455556778899998654 566666     9999999999999988862  


Q ss_pred             ----cCceeEEEEcCCeEEEE---------------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          133 ----RSDVRSVKLSRDRIVVV---------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       133 ----~~~i~~~~~~~~~~~~~---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                          ...+..++|+|++..++               .+..+.+||..+++.+..+..+.. ..  .+.+++++.++++.+
T Consensus        77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~--~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-IT--MLAWARDGSKLYGLG  153 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-CC--CEEECTTSSCEEEES
T ss_pred             CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC-ce--EEEEcCCCCEEEEEc
Confidence                23456789999988775               146799999999999888876543 23  344556667776643


Q ss_pred             CCCCeEEEEEcCC-cceEEEeccccceeEEEecCCCC------------------------EEEEEcCCCeEEEEEECCC
Q 015198          194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL------------------------LLATASTRGTLIRIFNTVD  248 (411)
Q Consensus       194 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~------------------------~l~s~s~dg~~I~vwd~~~  248 (411)
                         +.+.+|+... +....+..+.. .....+.+++.                        .+..+..++. +.+||+.+
T Consensus       154 ---~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  228 (337)
T d1pbyb_         154 ---RDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG-LLTMDLET  228 (337)
T ss_dssp             ---SSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE-EEEEETTT
T ss_pred             ---CCcceeeeecCcEEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCcc-EEEEEcCC
Confidence               3456666544 33333332221 11111222221                        1122233456 89999998


Q ss_pred             CceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCC
Q 015198          249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTG  328 (411)
Q Consensus       249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (411)
                      ++........ +...+..+.+++++.+++.+  ++.|++||+.+++...                               
T Consensus       229 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~-------------------------------  274 (337)
T d1pbyb_         229 GEMAMREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK-------------------------------  274 (337)
T ss_dssp             CCEEEEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE-------------------------------
T ss_pred             CcEEEEEecC-CCcceEEEEecccceEEEEc--cccEEEEECCCCcEEE-------------------------------
Confidence            8865543322 56678889999999988766  5789999999987542                               


Q ss_pred             CCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          329 ANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                               ++..+. ....++|+++ ..|++++.+|.|.+|+...
T Consensus       275 -------------------------~~~~~~-~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         275 -------------------------RVPLPH-SYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             -------------------------EEECSS-CCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             -------------------------EEcCCC-CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence                                     333333 3446789999 6788888899999998764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=7.1e-16  Score=144.05  Aligned_cols=229  Identities=10%  Similarity=0.019  Sum_probs=162.6

Q ss_pred             EEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc--EEEEEe---
Q 015198           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA---  131 (411)
Q Consensus        58 ~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~--~~~~~~---  131 (411)
                      ++++.+ +|.|.|||.++.+.+....  .+ ..+..+.|+||+.++++++.|     +.|++||+.+++  .+..+.   
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~--~g-~~~~~v~fSpDG~~l~~~s~d-----g~v~~~d~~t~~~~~~~~i~~~~  105 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLD--TG-YAVHISRLSASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAEIKIGS  105 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEE--CS-SCEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCCEEEEEECCS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe--CC-CCeeEEEECCCCCEEEEEcCC-----CCEEEEEeeCCCceEEEEEecCC
Confidence            345666 9999999999977666654  33 357889999999999988887     999999988876  444444   


Q ss_pred             -ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCc---------ceEEEccCCCceEEEEecCCCC
Q 015198          132 -FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLR---------GLCCLSHHSSTSVLACPGLQRG  197 (411)
Q Consensus       132 -~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~g~~dg  197 (411)
                       +.+.+.+..|+|||++++    .++.|++||..+++.+..+..+....         ....+..++++..++++...++
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~  185 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  185 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence             344455566788998764    68999999999999988876543221         2334455666767766677889


Q ss_pred             eEEEEEcCC-cceEEEe-ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC---CCcceEEEEeCCC
Q 015198          198 QVRIEHFGL-NMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV---DRAEIYSIALSPN  272 (411)
Q Consensus       198 ~i~i~~~~~-~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~---~~~~v~~l~~spd  272 (411)
                      .|.+++... +...... .+...+..++|+|+|+++++++.++..+.++|..+++.+..+..+.   +........+...
T Consensus       186 ~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  265 (432)
T d1qksa2         186 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF  265 (432)
T ss_dssp             EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTT
T ss_pred             eEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCC
Confidence            999977654 3333222 3456778999999999888777665449999999988887775431   3334455566555


Q ss_pred             CCEEEEEe-CCCcEEEEEccccc
Q 015198          273 VQWLAVAS-DKGTVHIFSLRVRV  294 (411)
Q Consensus       273 g~~l~s~s-~dg~I~vwd~~~~~  294 (411)
                      +...++.. .++.|.+|+.....
T Consensus       266 g~~~~~~~lg~~~v~~~~~~~~~  288 (432)
T d1qksa2         266 GPVWATSHMGDDSVALIGTDPEG  288 (432)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTT
T ss_pred             CceecccccCCceEEeccccccc
Confidence            55555443 37789999876543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=9.9e-16  Score=139.80  Aligned_cols=247  Identities=5%  Similarity=-0.102  Sum_probs=150.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe------CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCC---
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ---  110 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~---  110 (411)
                      ...+.+++.+++++|||+.+++..      .+.|.+||.++.+.+....  .+..  ..+.|+|++..++.+..+..   
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~--~~~~--~~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN--GGFL--PNPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe--CCCC--ccEEEcCCCCEEEEEeecCCccc
Confidence            456888999999999999988653      3568899988866554433  3332  25789999987776543211   


Q ss_pred             --CCCCeEEEEECCCCcEEEEEe-ecCc-------eeEEEEcCCeEEEE-----EcCeEEEEEcCCceeeEEEeccCCCc
Q 015198          111 --YPPTKVIIWDDHQSRCIGEFA-FRSD-------VRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLR  175 (411)
Q Consensus       111 --~~d~~i~vwd~~~~~~~~~~~-~~~~-------i~~~~~~~~~~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~  175 (411)
                        ..++.|.+||..+++.+..+. +...       ...+.|+++++.+.     .++.+.+|+....+........    
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----  167 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP----  167 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccc----
Confidence              124789999999999888776 2222       23456666665433     2455666666554443332211    


Q ss_pred             ceEEEccCCCceEEEEecCCCCeEEEEE-----------------------------------------------cCCcc
Q 015198          176 GLCCLSHHSSTSVLACPGLQRGQVRIEH-----------------------------------------------FGLNM  208 (411)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~-----------------------------------------------~~~~~  208 (411)
                      ....+++++  ..++++.+.|+.+.+|+                                               .....
T Consensus       168 ~~~~~s~~g--~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         168 TCYHIHPGA--PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             eeEEEecCC--CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCe
Confidence            112222222  22222233344444433                                               22211


Q ss_pred             eEEE---ecc----------ccceeEEEecCCCCEEE----------EEcCCCeEEEEEECCCCceEEEEeCCCCCcceE
Q 015198          209 IKLI---NAH----------DSHIACFTLTLDGLLLA----------TASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (411)
Q Consensus       209 ~~~~---~~~----------~~~i~~l~~sp~g~~l~----------s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (411)
                      ....   ..+          ......+++++++..++          ....++. |.+||+.+++.+..+.   +...+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~t~~~~~~~~---~~~~~~  321 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE-VTSVTGLVGQTSSQIS---LGHDVD  321 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe-EEEEECCCCcEEEEec---CCCCee
Confidence            1100   001          11223345556655443          3445567 9999999999988876   445789


Q ss_pred             EEEeCCCCCE--EEEEeCCCcEEEEEccccccCCCCC
Q 015198          266 SIALSPNVQW--LAVASDKGTVHIFSLRVRVVGEDSS  300 (411)
Q Consensus       266 ~l~~spdg~~--l~s~s~dg~I~vwd~~~~~~~~~~~  300 (411)
                      .++|+|||+.  +++++.|+.|+|||+.+++....+.
T Consensus       322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            9999999984  4678899999999999998765444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=5.1e-16  Score=139.11  Aligned_cols=247  Identities=12%  Similarity=0.071  Sum_probs=161.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeec-CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEE
Q 015198           41 DVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        41 ~~h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      ..|.+.|..|+|+|||++|+++.  ++.|++|+++.......... .........+.++|++..++.++.+    ++.|.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~----~~~v~  108 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN----AGNVS  108 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT----TTEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccC----CCcee
Confidence            46888999999999999997665  89999999986544332211 1233345568899998766665432    28999


Q ss_pred             EEECCCCcEEEEEe---ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEe----ccCCCcceEEEccCCCc
Q 015198          118 IWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIE----TLANLRGLCCLSHHSST  186 (411)
Q Consensus       118 vwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  186 (411)
                      +|+...........   +...+.++.++|+++.++    .+..|.+|+...........    ..........+.+++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         109 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             eeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence            99977766554443   567788999999998776    46789999986643322111    11111233455566666


Q ss_pred             eEEEEecCCCCeEEEEEcCCcc--e---EEEe------ccccceeEEEecCCCCEEEEE-cCCCeEEEEEECCCCceEEE
Q 015198          187 SVLACPGLQRGQVRIEHFGLNM--I---KLIN------AHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQE  254 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~~~--~---~~~~------~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~  254 (411)
                      ..++......+...++......  .   ..+.      ........+++++++++++.. ..++. +.+|++........
T Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~  267 (333)
T d1ri6a_         189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGSVLS  267 (333)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCCEE
T ss_pred             eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCe-EEEEEEcCCCCEEE
Confidence            6666666667777776554321  1   1111      123456678899999976654 55667 99998876543322


Q ss_pred             EeCC-CCCcceEEEEeCCCCCEEEEEeC-CCcEEEEEccc
Q 015198          255 VRRG-VDRAEIYSIALSPNVQWLAVASD-KGTVHIFSLRV  292 (411)
Q Consensus       255 ~~~~-~~~~~v~~l~~spdg~~l~s~s~-dg~I~vwd~~~  292 (411)
                      +... .....+.+++|+|||++|++++. ++.|.+|+++.
T Consensus       268 ~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         268 KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            2211 13345778999999999887764 57899997654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=3.5e-15  Score=133.49  Aligned_cols=231  Identities=11%  Similarity=0.086  Sum_probs=149.0

Q ss_pred             EEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEE-EecCCCCCCCCCeEEEEECCCCcEEEE----Eee
Q 015198           59 FAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGE----FAF  132 (411)
Q Consensus        59 la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~d~~i~vwd~~~~~~~~~----~~~  132 (411)
                      ++++. +++|++|+++............+...+..+.|+|++..| +++..+     +.|++|++........    ...
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d-----~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCC-----CeEEEEEEeCCCCcEEEeeeccc
Confidence            34555 999999999764432222222556667888999998766 555555     9999999876543322    225


Q ss_pred             cCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcc
Q 015198          133 RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM  208 (411)
Q Consensus       133 ~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~  208 (411)
                      ...+..++|+|||++++    .++.|.+|+....................++.+++++..++.....+..|.+|+.....
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            66788999999998877    47789999987765554443332222334445555666666666667788886654422


Q ss_pred             eEE-------EeccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCc----eEEEEeC----CCCCcceEEEEeCCC
Q 015198          209 IKL-------INAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGT----RLQEVRR----GVDRAEIYSIALSPN  272 (411)
Q Consensus       209 ~~~-------~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~----~~~~~~~----~~~~~~v~~l~~spd  272 (411)
                      ...       ..........++|++++.+++... ..+. ..+|++....    ....+..    .........+++++|
T Consensus       162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  240 (333)
T d1ri6a_         162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD  240 (333)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred             cceeeeceeeeeecCCCccEEEEeccceeEEeeccccCc-eEEEeecccccceeeeeeeeeeecCCCccccceeEEEecc
Confidence            111       122344567899999999877655 4455 8888865432    2222221    112235678899999


Q ss_pred             CCEEEEE-eCCCcEEEEEcccccc
Q 015198          273 VQWLAVA-SDKGTVHIFSLRVRVV  295 (411)
Q Consensus       273 g~~l~s~-s~dg~I~vwd~~~~~~  295 (411)
                      +++++.. ..++.+.+|++.....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~  264 (333)
T d1ri6a_         241 GRHLYACDRTASLITVFSVSEDGS  264 (333)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSC
T ss_pred             cCceeeecccCCeEEEEEEcCCCC
Confidence            9977654 5567899999976653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.65  E-value=3.3e-15  Score=134.17  Aligned_cols=232  Identities=9%  Similarity=-0.029  Sum_probs=151.3

Q ss_pred             EeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeE
Q 015198           93 MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH  166 (411)
Q Consensus        93 ~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~  166 (411)
                      +++++++.++++++.+     +.|.+||+.+++.+.++.  +...+.+++|+|||++++    .++.|++||+.+++.+.
T Consensus         2 ~a~~~~~~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCCCTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccCCCCCcEEEEEcCC-----CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee
Confidence            3578899999999988     999999999999999887  456788999999998764    57899999999999988


Q ss_pred             EEeccCCCcc----eEEEccCCCceEEEEecC-----------CCCeEEEEEcCC-cceEEEecc--ccce---------
Q 015198          167 QIETLANLRG----LCCLSHHSSTSVLACPGL-----------QRGQVRIEHFGL-NMIKLINAH--DSHI---------  219 (411)
Q Consensus       167 ~~~~~~~~~~----~~~~~~~~~~~~l~~~g~-----------~dg~i~i~~~~~-~~~~~~~~~--~~~i---------  219 (411)
                      .+........    ...+.+++++..+++++.           .++.+.+++... +....+..+  ...+         
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  156 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence            8765432211    123445556666654321           244555544332 111111000  0111         


Q ss_pred             -----------------------------eEEEecCCCCEE--------------------------EEEcCCCeEEEEE
Q 015198          220 -----------------------------ACFTLTLDGLLL--------------------------ATASTRGTLIRIF  244 (411)
Q Consensus       220 -----------------------------~~l~~sp~g~~l--------------------------~s~s~dg~~I~vw  244 (411)
                                                   ..+.++|++..+                          +++..+.. +.+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  235 (346)
T d1jmxb_         157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG-YLSV  235 (346)
T ss_dssp             CEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE-EEEE
T ss_pred             EEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCce-EEEE
Confidence                                         112233333222                          11222334 7778


Q ss_pred             ECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccC
Q 015198          245 NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLIS  324 (411)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (411)
                      |+.++......... +...+..+.+++++.+++.... +.|.+||+.+++...                           
T Consensus       236 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~---------------------------  286 (346)
T d1jmxb_         236 DLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIK---------------------------  286 (346)
T ss_dssp             ETTTCCEEEEEEEE-CSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEE---------------------------
T ss_pred             ECCCCceEEEEeec-ccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEE---------------------------
Confidence            88877765444322 5667888999999888877664 569999999887432                           


Q ss_pred             CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CEEEEEEeCCcEEEEEEec
Q 015198          325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (411)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~~~~~~~~~  389 (411)
                                                   .+..+. ....++|+++ ..|++++.||.|.+|+...
T Consensus       287 -----------------------------~~~~~~-~~~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         287 -----------------------------AANLDH-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             -----------------------------EEECSS-CCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             -----------------------------EEcCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence                                         233332 3446899999 7888888999999997764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=2.5e-14  Score=129.17  Aligned_cols=237  Identities=12%  Similarity=-0.022  Sum_probs=146.8

Q ss_pred             eEEEEEcCCCCEEEEE----------e-CCcEEEEecCCCcceEEeecCCCC-----EEEEEEeccCCeEEE--EecCCC
Q 015198           47 LISVSWNQDYGCFAAG----------T-SCGFRIYNCEPFKETFRRDLKSGG-----FRIVEMLFRCNILAL--VGAGDN  108 (411)
Q Consensus        47 V~~l~~s~~g~~la~g----------~-dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l--~s~~~d  108 (411)
                      +..++|+|||++|++.          . ++.|++||..+.+...........     .....+.|++++..+  +....+
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            3478999999988764          3 678999999986655444321111     111235567766443  343444


Q ss_pred             CCCCCCeEEEEECCCCcEEEEEeecCcee--------EEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcc
Q 015198          109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVR--------SVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRG  176 (411)
Q Consensus       109 ~~~~d~~i~vwd~~~~~~~~~~~~~~~i~--------~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~  176 (411)
                           ..+.+|+..+++.+..+.......        .+.+++++..+.    .++.+.+++.......     +...+.
T Consensus       129 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~  198 (355)
T d2bbkh_         129 -----PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE-----DEFLIN  198 (355)
T ss_dssp             -----CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT-----TSCBCS
T ss_pred             -----ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce-----ecceee
Confidence                 899999999999888877433322        334444443333    2233333333222111     111112


Q ss_pred             eEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEE---ecc----------ccceeEEEecCCCCEEEEEcCC------
Q 015198          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI---NAH----------DSHIACFTLTLDGLLLATASTR------  237 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~---~~~----------~~~i~~l~~sp~g~~l~s~s~d------  237 (411)
                      ...+..  ++..++. .+.++.+++|+.....+..+   ..+          ......+++++++..++....+      
T Consensus       199 ~~~~~~--~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~  275 (355)
T d2bbkh_         199 HPAYSQ--KAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH  275 (355)
T ss_dssp             CCEEET--TTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred             eccccC--CCCeEEE-ecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceee
Confidence            222322  2334444 34789999988776544332   211          1233458899999987765443      


Q ss_pred             ----CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC--EEEEEeCCCcEEEEEccccccCCCCC
Q 015198          238 ----GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRVVGEDSS  300 (411)
Q Consensus       238 ----g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~I~vwd~~~~~~~~~~~  300 (411)
                          .. |.+||..+++.+..+..   ...+.+++|+|||+  +++++..|+.|+|||+++++..+.+.
T Consensus       276 ~~~~~~-v~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         276 KTASRF-VVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             TSCEEE-EEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             cCCCCe-EEEEeCCCCcEEEEecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence                35 99999999999888874   34688999999998  35567789999999999998765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=2.4e-14  Score=129.39  Aligned_cols=234  Identities=9%  Similarity=-0.024  Sum_probs=146.0

Q ss_pred             CeEEEEEcCCCCEEEEEe------CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEec----------CCCC
Q 015198           46 ELISVSWNQDYGCFAAGT------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGA----------GDNS  109 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~----------~~d~  109 (411)
                      ++.-.+.+||++.+++..      ++.|.+||.++.+.+....  .+...  .+.|+|++..++..          ..+ 
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~--~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d-   77 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID--GGFLP--NPVVADDGSFIAHASTVFSRIARGERT-   77 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE--ECSSC--EEEECTTSSCEEEEEEEEEETTEEEEE-
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE--CCCCC--ceEEcCCCCEEEEEeCCCccccccCCC-
Confidence            334446689999988753      4569999999876555443  33322  46788888655432          223 


Q ss_pred             CCCCCeEEEEECCCCcEEEEEee--------cCceeEEEEcCCeEEEE-----EcCeEEEEEcCCceeeEEEeccCCCcc
Q 015198          110 QYPPTKVIIWDDHQSRCIGEFAF--------RSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLRG  176 (411)
Q Consensus       110 ~~~d~~i~vwd~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~  176 (411)
                          +.|++||+.+++.+..+..        ......+.|++++..+.     .+..+.+|+..+++.+..+..+...  
T Consensus        78 ----~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  151 (355)
T d2bbkh_          78 ----DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY--  151 (355)
T ss_dssp             ----EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE--
T ss_pred             ----CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc--
Confidence                7899999999999888762        12345689999998766     3578999999999988887654321  


Q ss_pred             eEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEE------eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC
Q 015198          177 LCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLI------NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (411)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~------~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (411)
                       .. .+.+....++.+  .|+...+ ..........+      ..+...+....+.+++..++.++.++. +++|++..+
T Consensus       152 -~~-~~~~~~~~~~~~--~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~  226 (355)
T d2bbkh_         152 -HI-FPTAPDTFFMHC--RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGK-IHQIDLSSG  226 (355)
T ss_dssp             -EE-EEEETTEEEEEE--TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSE-EEEEECTTS
T ss_pred             -eE-eecCCcceEEEc--CCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCe-EEEEecCCC
Confidence             11 111112222222  2333333 22222222211      123444566778888888999999999 999999877


Q ss_pred             ceEE--EEeCCC--------CCcceEEEEeCCCCCEEEEEeCC----------CcEEEEEcccccc
Q 015198          250 TRLQ--EVRRGV--------DRAEIYSIALSPNVQWLAVASDK----------GTVHIFSLRVRVV  295 (411)
Q Consensus       250 ~~~~--~~~~~~--------~~~~v~~l~~spdg~~l~s~s~d----------g~I~vwd~~~~~~  295 (411)
                      +...  ......        .......+++++++..++....+          +.|.+||+.+++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~  292 (355)
T d2bbkh_         227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER  292 (355)
T ss_dssp             SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             cEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence            6432  111100        01123357888998887766543          3588999888764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.46  E-value=3.2e-11  Score=109.22  Aligned_cols=210  Identities=8%  Similarity=-0.085  Sum_probs=126.4

Q ss_pred             EEEEcCCCCEEEEEe-----------CCcEEEEecCCCcceEEeecCCCCEEEEE-------EeccCCeEE--EEecCCC
Q 015198           49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSGGFRIVE-------MLFRCNILA--LVGAGDN  108 (411)
Q Consensus        49 ~l~~s~~g~~la~g~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--l~s~~~d  108 (411)
                      .++|+|||++|+++.           ++.|.+||..+.+.......  +......       +.+++++..  +.....+
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  147 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL--PDAPRFDVGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEec--CCcceeEeccCCCcEEEEeCCCcEEEEEEcCC
Confidence            799999999999874           46799999998776555443  2222222       334444432  2222222


Q ss_pred             CCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCC----cceEE-
Q 015198          109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANL----RGLCC-  179 (411)
Q Consensus       109 ~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~-  179 (411)
                           +.+.+|+....+....   .....++.+++++..++    .|+.+.+|+...++...........    ..... 
T Consensus       148 -----~~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (373)
T d2madh_         148 -----PAVGLVVQGGSSDDQL---LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPA  219 (373)
T ss_pred             -----CceEEeeccCCeEEEE---eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeE
Confidence                 6777888766654433   33456778888876443    6899999998665544332211000    00000 


Q ss_pred             ----------------------------------------------------EccCCCceEEEE---------ecCCCCe
Q 015198          180 ----------------------------------------------------LSHHSSTSVLAC---------PGLQRGQ  198 (411)
Q Consensus       180 ----------------------------------------------------~~~~~~~~~l~~---------~g~~dg~  198 (411)
                                                                          +..++++..++.         ....++.
T Consensus       220 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  299 (373)
T d2madh_         220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE  299 (373)
T ss_pred             EECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe
Confidence                                                                011111111111         1223455


Q ss_pred             EEEEEcCC-cceEEEeccccceeEEEecCCCCE--EEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCC
Q 015198          199 VRIEHFGL-NMIKLINAHDSHIACFTLTLDGLL--LATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (411)
Q Consensus       199 i~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~--l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (411)
                      +.+|+... +.+..+ .+...+..++|+|||+.  +++++.|+. |++||+.+++.+.++..  +....+.|++.++
T Consensus       300 v~~~d~~t~~~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~-v~v~D~~tg~~~~~~~~--~g~~P~~l~~~~~  372 (373)
T d2madh_         300 VTSVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEV-LHIYDAGAGDQDQSTVE--LGSGPQVLSVMNE  372 (373)
T ss_pred             EEEEECCCCcEEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEECC--CCCCCcEEEEecC
Confidence            66655443 334433 46677899999999984  467889999 99999999999999986  4445666666543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=6.8e-13  Score=120.73  Aligned_cols=237  Identities=5%  Similarity=-0.109  Sum_probs=146.0

Q ss_pred             EEEEEcCCCCEEEEEe-----------CCcEEEEecCCCcceEEeecCCCC-----EEEEEEeccCCeEEEEecC-CCCC
Q 015198           48 ISVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSGG-----FRIVEMLFRCNILALVGAG-DNSQ  110 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~-----------dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~s~~-~d~~  110 (411)
                      ..++|+|||+.|++.+           ++.|++||..+.+......++...     .....+.|++++..++.+. .+  
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~--  145 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS--  145 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS--
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC--
Confidence            3589999999998754           567999999987766555432211     1122467888887665443 33  


Q ss_pred             CCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccC----CCcceEEEccCC
Q 015198          111 YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLA----NLRGLCCLSHHS  184 (411)
Q Consensus       111 ~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~  184 (411)
                         +.+.+||+.+++.+..+.......... .....+++  .||.+.++++.............    .........+.+
T Consensus       146 ---~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (368)
T d1mdah_         146 ---SAAAGLSVPGASDDQLTKSASCFHIHP-GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY  221 (368)
T ss_dssp             ---SCEEEEEETTTEEEEEEECSSCCCCEE-EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred             ---CeEEEEECCCCcEeEEeeccCcceEcc-CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc
Confidence               899999999999988887433221111 11222222  67888888875543332221110    111222334445


Q ss_pred             CceEEEEecCCCCeEEEEEcCCcceEEEec-------------cccceeEEEecCCCCEEEEEcCC---------CeEEE
Q 015198          185 STSVLACPGLQRGQVRIEHFGLNMIKLINA-------------HDSHIACFTLTLDGLLLATASTR---------GTLIR  242 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~-------------~~~~i~~l~~sp~g~~l~s~s~d---------g~~I~  242 (411)
                      ++..+..   ..+.+++.+........+..             .......+++++++..++....+         .. |+
T Consensus       222 ~g~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~-v~  297 (368)
T d1mdah_         222 PGMLVWA---VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN-TS  297 (368)
T ss_dssp             TTEEEEC---BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE-EE
T ss_pred             CcEEEEe---cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCce-EE
Confidence            5544432   34555554444332222211             11123457889998877654322         24 89


Q ss_pred             EEECCCCceEEEEeCCCCCcceEEEEeCCCCCE--EEEEeCCCcEEEEEccccccCC
Q 015198          243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW--LAVASDKGTVHIFSLRVRVVGE  297 (411)
Q Consensus       243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~--l~s~s~dg~I~vwd~~~~~~~~  297 (411)
                      +||..+++.+..+..   ...+.+++|+|||+.  ++++..|+.|+|||..+++...
T Consensus       298 v~D~~t~~~~~~~~~---~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         298 SVTASVGQTSGPISN---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             EEESSSCCEEECCEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             EEECCCCcEeEEecC---CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            999999998877763   357889999999973  4566778999999999998764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=2.8e-09  Score=92.38  Aligned_cols=239  Identities=13%  Similarity=0.172  Sum_probs=162.2

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeec----CCCCEEEEEEe--ccCCeEEEEecCCCCCCCCCeEE
Q 015198           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL----KSGGFRIVEML--FRCNILALVGAGDNSQYPPTKVI  117 (411)
Q Consensus        45 ~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~l~s~~~d~~~~d~~i~  117 (411)
                      .....|+++++|+++++-. ++.|++||.+. ..+.....    .........+.  ......+++....+     +.|.
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~i~   96 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-----HQIQ   96 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-----CEEE
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccCCc-----cccc
Confidence            3468999999999877766 88999999763 22111100    01111122222  23334444444443     6888


Q ss_pred             EEECCCCcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe
Q 015198          118 IWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (411)
Q Consensus       118 vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (411)
                      +++ ..++....+.  .......+++.+++.+++   ..+.+.+++. +++.+..+...........+..++++.++++ 
T Consensus        97 ~~~-~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~-  173 (279)
T d1q7fa_          97 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS-  173 (279)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEE-
T ss_pred             ccc-ccccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEee-
Confidence            888 4677777765  345677899999988777   3467888874 5677777755444445566667777766654 


Q ss_pred             cCCCCeEEEEEcCCcceEEEe--ccccceeEEEecCCCCEEEEEcC-CCeEEEEEECCCCceEEEEeCCCCCcceEEEEe
Q 015198          193 GLQRGQVRIEHFGLNMIKLIN--AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (411)
Q Consensus       193 g~~dg~i~i~~~~~~~~~~~~--~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (411)
                      ....+.|++++..++.+..+.  +.......|++.++|+++++-.. ++. |.+|+ .+|+.+.++...........|++
T Consensus       174 d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~-v~~f~-~~G~~~~~~~~~~~~~~p~~vav  251 (279)
T d1q7fa_         174 DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFT-QDGQLISALESKVKHAQCFDVAL  251 (279)
T ss_dssp             EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEEC-TTSCEEEEEEESSCCSCEEEEEE
T ss_pred             eccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcE-EEEEC-CCCCEEEEEeCCCCCCCEeEEEE
Confidence            557889999999888877763  34445788999999997776543 456 99998 57998888765434446889999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEcccccc
Q 015198          270 SPNVQWLAVASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       270 spdg~~l~s~s~dg~I~vwd~~~~~~  295 (411)
                      .+||.+++ +..++.|++|+.+...+
T Consensus       252 ~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         252 MDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             ETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             eCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            99997554 56788999999987753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.30  E-value=4.2e-11  Score=109.25  Aligned_cols=237  Identities=10%  Similarity=-0.019  Sum_probs=157.1

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE--EEEecCCCCC-----
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL--ALVGAGDNSQ-----  110 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~-----  110 (411)
                      ...|...+....++|||++|++..  ++.|.++|+++++......+ ........+.|++++.  +++..+++..     
T Consensus        67 gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i-P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          67 GDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI-PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-TTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec-CCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            345666777788899999998877  89999999998766555444 3455677777877654  4444333200     


Q ss_pred             -------CCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E-------------------------------
Q 015198          111 -------YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L-------------------------------  150 (411)
Q Consensus       111 -------~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-------------------------------  150 (411)
                             .....+..+|..+.+...++........+.++|+|++++  .                               
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             ccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence                   001345678999999988888777889999999998776  1                               


Q ss_pred             -----------cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc---------ceE
Q 015198          151 -----------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---------MIK  210 (411)
Q Consensus       151 -----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---------~~~  210 (411)
                                 ++.+.+++....+.+..+.....+.   .+..+|++++++++|..+++|.+|+...-         ...
T Consensus       226 ~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPh---Gv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~  302 (441)
T d1qnia2         226 VKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPH---GLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD  302 (441)
T ss_dssp             HHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCC---CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred             ecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCcc---CceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcce
Confidence                       1233334334445555665554432   34556677888888999999999886531         111


Q ss_pred             EEecc---ccceeEEEecCCCCEEEEEcCCCeEEEEEECCC----------CceEEEEeCCC---CCcceEEEEeCCCCC
Q 015198          211 LINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVD----------GTRLQEVRRGV---DRAEIYSIALSPNVQ  274 (411)
Q Consensus       211 ~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------~~~~~~~~~~~---~~~~v~~l~~spdg~  274 (411)
                      .+.++   .-.....+|+++|..+.+...|.. |..|++..          ...+..+..+.   |...+.+..++|||+
T Consensus       303 ~~~~~~~~glgplh~~fd~~g~~yts~~~ds~-v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQ-VCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             GEEECCBCCSCEEEEEECSSSEEEEEETTTTE-EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             EEEeecccccCcccceecCCceEEEcccccce-EEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCc
Confidence            11111   112334589999998899999999 99999741          12344443211   444556667899999


Q ss_pred             EEEEEeC
Q 015198          275 WLAVASD  281 (411)
Q Consensus       275 ~l~s~s~  281 (411)
                      ||++++.
T Consensus       382 ~l~s~~k  388 (441)
T d1qnia2         382 WLVVLSK  388 (441)
T ss_dssp             EEEEEES
T ss_pred             EEEecCc
Confidence            9999953

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.24  E-value=7.9e-11  Score=107.41  Aligned_cols=223  Identities=10%  Similarity=-0.024  Sum_probs=143.2

Q ss_pred             EEEEe-CCcEEEEecCCCcceEEeec----------------------------CCCCEEEEEEeccCCeEEEE-ecCCC
Q 015198           59 FAAGT-SCGFRIYNCEPFKETFRRDL----------------------------KSGGFRIVEMLFRCNILALV-GAGDN  108 (411)
Q Consensus        59 la~g~-dg~i~iw~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~l~-s~~~d  108 (411)
                      +++|+ +|.|++|++.+.+.+.....                            ..|+.........+|+.++. ....+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            34555 99999999876554433211                            11233445555678888764 44444


Q ss_pred             CCCCCCeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeE--EEE--EcC------------------eEEEEEcCCcee
Q 015198          109 SQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRI--VVV--LEH------------------KIYVYSFVDLKL  164 (411)
Q Consensus       109 ~~~~d~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~--~~~--~dg------------------~i~iwd~~~~~~  164 (411)
                           +.|.++|+.+++....+.  ....+..++|+|+++  +++  .+.                  .+..+|..+.+.
T Consensus        94 -----~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          94 -----TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             -----TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             -----CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence                 899999999999888776  577899999999987  444  222                  235578888888


Q ss_pred             eEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE-EEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEE
Q 015198          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI  243 (411)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (411)
                      ..++.....+ ..+.+  ++++++++++......+.. .....+....+..... -..+++.|+|+++..++ ++. +.+
T Consensus       169 ~~qI~v~~~p-~~v~~--spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~-p~~~~~~~dGk~~~v~~-~~v-~vv  242 (441)
T d1qnia2         169 AWQVIVDGNL-DNTDA--DYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV-ERIAAAVKAGNFKTIGD-SKV-PVV  242 (441)
T ss_dssp             EEEEEESSCC-CCEEE--CSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH-HHHHHHHHTTCCBCCTT-CCC-CEE
T ss_pred             eEEEecCCCc-cceEE--CCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCc-cceEEEecCCCEEEeCC-CCc-EEE
Confidence            7777655432 33444  4455666555433333322 2222333322222221 13345678999876644 566 778


Q ss_pred             EECCCCceEEEEeCCCCCcceEEEEeCCCCCEEE-EEeCCCcEEEEEcccccc
Q 015198          244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA-VASDKGTVHIFSLRVRVV  295 (411)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg~I~vwd~~~~~~  295 (411)
                      ++....+.+..+..+   .....+.++|||++++ ++..+++|.|||+++-+.
T Consensus       243 d~~~~~~v~~~IPvg---ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         243 DGRGESEFTRYIPVP---KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD  292 (441)
T ss_dssp             ECSSSCSSEEEECCB---SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred             EcccCCceEEEEeCC---CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhh
Confidence            877777777777753   2457889999999875 566789999999988654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.20  E-value=2.9e-09  Score=96.09  Aligned_cols=248  Identities=10%  Similarity=0.099  Sum_probs=144.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeE--EEEecCCCCCCCCCeEEEE
Q 015198           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL--ALVGAGDNSQYPPTKVIIW  119 (411)
Q Consensus        42 ~h~~~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~~~d~~i~vw  119 (411)
                      .....+..|+|+|++++|.+...+.+..|.++...................+.+++++.  +++....    ..+.+..+
T Consensus        37 ~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~----~~~~v~~~  112 (365)
T d1jofa_          37 PQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQ----PPYAVYAN  112 (365)
T ss_dssp             CTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSS----TTCCEEEE
T ss_pred             cCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecC----CCCEEEEe
Confidence            34555678999999999998887788888887533333221111111223344555554  3443322    12444443


Q ss_pred             EC------------C-CCcE---EEEEe--ecCceeEEEEcCCeEEEE----EcCeEEEEEcCC-ceee--EEEeccCCC
Q 015198          120 DD------------H-QSRC---IGEFA--FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLL--HQIETLANL  174 (411)
Q Consensus       120 d~------------~-~~~~---~~~~~--~~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~-~~~~--~~~~~~~~~  174 (411)
                      .+            . .++.   .....  ....+.++.|+|++++++    ....|.+|+... ++..  ..+......
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T d1jofa_         113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             EccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC
Confidence            32            1 1111   11111  234578999999999777    246788888643 3322  222222222


Q ss_pred             cceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEE---e-----------------ccccceeEEEecCCCCEEEEE
Q 015198          175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI---N-----------------AHDSHIACFTLTLDGLLLATA  234 (411)
Q Consensus       175 ~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~---~-----------------~~~~~i~~l~~sp~g~~l~s~  234 (411)
                      .....+.++++++++.++...++.|.+++.+......+   .                 .+......+.++|+|++|+++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            35667777888888877787889999977655322111   1                 111235578999999998876


Q ss_pred             cC------CCeEEEEEECCCCceEEE---E-eCCCCCcceEEEEeCC-CCCEEEEEe-CCCcEEEEEccccc
Q 015198          235 ST------RGTLIRIFNTVDGTRLQE---V-RRGVDRAEIYSIALSP-NVQWLAVAS-DKGTVHIFSLRVRV  294 (411)
Q Consensus       235 s~------dg~~I~vwd~~~~~~~~~---~-~~~~~~~~v~~l~~sp-dg~~l~s~s-~dg~I~vwd~~~~~  294 (411)
                      ..      .+. |..|++.....+..   + ...........++++| +|++|+++. .++.|.||+++...
T Consensus       273 nr~~~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         273 SRANKFELQGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEESSTTSCCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             cccCCCccceE-EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            42      234 66777654322221   1 1111223467799998 899887765 66889999986543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.20  E-value=1.1e-10  Score=109.34  Aligned_cols=118  Identities=14%  Similarity=0.082  Sum_probs=86.4

Q ss_pred             EEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEe---ecCCCCEEEEEEeccCCeEEEEecCCCCC----CCCCeEEEEE
Q 015198           48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRR---DLKSGGFRIVEMLFRCNILALVGAGDNSQ----YPPTKVIIWD  120 (411)
Q Consensus        48 ~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~----~~d~~i~vwd  120 (411)
                      ..+.|.++++++.. .++.+.+||..+.+.....   .+..+...+.++.|+||+..|+.......    -.++.+.+||
T Consensus        20 ~~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          20 YSLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCCEECSSSEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE-cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            35789999987653 4788999999987654322   23344556788899999987776532100    0127889999


Q ss_pred             CCCCcEEEEEeecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeE
Q 015198          121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLH  166 (411)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~  166 (411)
                      +.+++......+...+..+.|+|||+.++  .++.+++|+..+++..+
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE
T ss_pred             CCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceee
Confidence            99887554334788899999999999998  89999999988776554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.18  E-value=3.2e-10  Score=102.59  Aligned_cols=241  Identities=6%  Similarity=-0.095  Sum_probs=139.3

Q ss_pred             CCCCeEEEEEcCCCCEE--EE-Ee-CCc--EEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCC--CC---CC
Q 015198           43 DEIELISVSWNQDYGCF--AA-GT-SCG--FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD--NS---QY  111 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~l--a~-g~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--d~---~~  111 (411)
                      +.++...++..++++..  +. .. ++.  +.+||.++.+..-...  .+...  .+.+++++..++..+.  ..   ..
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~--~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~   93 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSL--GAFLS--LAVAGHSGSDFALASTSFARSAKGK   93 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE--ECTTC--EEEECTTSSCEEEEEEEETTTTSSS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEe--CCCCC--cceECCCCCEEEEEcccCccccccc
Confidence            33444445567777753  32 22 555  5555777655444333  23222  3567777755443211  00   00


Q ss_pred             CCCeEEEEECCCCcEEEEEee--------cCceeEEEEcCCeEEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEE
Q 015198          112 PPTKVIIWDDHQSRCIGEFAF--------RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCC  179 (411)
Q Consensus       112 ~d~~i~vwd~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  179 (411)
                      .++.|.+||..+++.+..+..        ......++|+|||++++    .++.+.+||+.+++.+..+..+....    
T Consensus        94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----  169 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----  169 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----
T ss_pred             cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----
Confidence            127899999999999988862        12234689999998776    47899999999999998887654321    


Q ss_pred             EccCCCceEEEEecCCCCeEEEEEcCCcceE-------EEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceE
Q 015198          180 LSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-------LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL  252 (411)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-------~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~  252 (411)
                      +.+.+...++  ..+.||.+.++........       .+..+...+..+.+.+++..+.+.  .+. +++++...+...
T Consensus       170 ~~~~~~~~~v--~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~-v~~~~~~~~~~~  244 (368)
T d1mdah_         170 IHPGAAATHY--LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASS-ILQGDIPAAGAT  244 (368)
T ss_dssp             CEEEETTEEE--CCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSC-CEEEECCSSCCE
T ss_pred             EccCCCceEE--EEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCC-EEEEeecCCceE
Confidence            1222222222  3456777666544322111       112344455667788888766554  345 777777665543


Q ss_pred             EEEeCCCC----------CcceEEEEeCCCCCEEEEEeCC---------CcEEEEEccccccC
Q 015198          253 QEVRRGVD----------RAEIYSIALSPNVQWLAVASDK---------GTVHIFSLRVRVVG  296 (411)
Q Consensus       253 ~~~~~~~~----------~~~v~~l~~spdg~~l~s~s~d---------g~I~vwd~~~~~~~  296 (411)
                      ........          ......+++++++..++....+         ..|.+||..+++..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~  307 (368)
T d1mdah_         245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS  307 (368)
T ss_dssp             EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE
T ss_pred             EEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe
Confidence            32211101          0112347888888877665432         24889999888743

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=6e-08  Score=82.91  Aligned_cols=218  Identities=13%  Similarity=0.067  Sum_probs=131.0

Q ss_pred             cEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCe
Q 015198           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR  145 (411)
Q Consensus        66 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~  145 (411)
                      .|.|.|.+........   .+...+....|+|||..|+-....  .....+.+.+...+.......+........|+|++
T Consensus        20 ~l~i~d~dG~~~~~l~---~~~~~~~sP~wSPDGk~IAf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg   94 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVH---RSPQPLMSPAWSPDGSKLAYVTFE--SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG   94 (269)
T ss_dssp             EEEEEETTSCSCEEEE---EESSCEEEEEECTTSSEEEEEECT--TSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTS
T ss_pred             EEEEEcCCCCCcEEEe---cCCCceeeeEECCCCCEEEEEEee--ccCcceeeeecccCceeEEeeeecccccceecCCC
Confidence            3555566543332222   344556788999998777654332  01256788888777776666688888999999999


Q ss_pred             EEEE----EcC--eEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEE--EEcCCcceEEEecccc
Q 015198          146 IVVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDS  217 (411)
Q Consensus       146 ~~~~----~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~  217 (411)
                      ..++    .++  .+..+............ .........+.+.++  .+......+|...+  .+........+..+..
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~  171 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQ--NLAFTSDQAGRPQVYKVNINGGAPQRITWEGS  171 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTSSCCEECCCSSS
T ss_pred             CeeeEeeecCCccceeecccccccceeeee-ccccccccccccccc--cceecccccCCceEeeeecccccceeeecccc
Confidence            8887    222  23333333322222222 222112233344333  33334445554444  5555666666666777


Q ss_pred             ceeEEEecCCCCEEEEEcCCC-e-EEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC---CcEEEEEccc
Q 015198          218 HIACFTLTLDGLLLATASTRG-T-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLRV  292 (411)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~dg-~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~I~vwd~~~  292 (411)
                      ......|+|+++.++..+.++ . .|.+.|...+..  .+..  .........|+|||++|+..+..   ..|++++++.
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~--~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLS--STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECC--CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cccccccccccceeEEEeecCCceeeeEeecccccc--eEee--cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            788889999999888766554 2 155556555543  3333  34466788999999998765543   3688999987


Q ss_pred             ccc
Q 015198          293 RVV  295 (411)
Q Consensus       293 ~~~  295 (411)
                      +..
T Consensus       248 ~~~  250 (269)
T d2hqsa1         248 RFK  250 (269)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.02  E-value=5.4e-08  Score=83.14  Aligned_cols=234  Identities=9%  Similarity=-0.049  Sum_probs=141.2

Q ss_pred             CeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC
Q 015198           46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~  123 (411)
                      .-..|++.++|.++++..  .+.+..++........ ... ........+.+++++.++++....     +.+++++..+
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-~~~-~~~~~p~gvav~~~g~i~v~d~~~-----~~i~~~~~~~   87 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPF-NGLYQPQGLAVDGAGTVYVTDFNN-----RVVTLAAGSN   87 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-CCC-CSCCSCCCEEECTTCCEEEEETTT-----EEEEECTTCS
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE-ecc-CCccCceEEEEcCCCCEEEeeeee-----ceeeeeeecc
Confidence            347999999999777655  5667776655432222 211 222233455677777777776654     6777766555


Q ss_pred             CcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEE
Q 015198          124 SRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVR  200 (411)
Q Consensus       124 ~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~  200 (411)
                      +..+..........++++.+++.+.+   .+..+..++...............  ....+..++++.++++ ...++.|.
T Consensus        88 ~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~~~~g~~~v~-~~~~~~i~  164 (260)
T d1rwia_          88 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLN--DPDGVAVDNSGNVYVT-DTDNNRVV  164 (260)
T ss_dssp             CCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCC--SCCEEEECTTCCEEEE-EGGGTEEE
T ss_pred             ceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccC--CcceeeecCCCCEeee-cccccccc
Confidence            55544333445678999999987777   356677777544322111111112  1223444555555544 34566777


Q ss_pred             EEEcCCcceEEEe-ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEE
Q 015198          201 IEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (411)
Q Consensus       201 i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (411)
                      .++.++.....+. ..-.....|+++++|+++++....+. |..++..... ...+... .-.....|+++++|.++++-
T Consensus       165 ~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~-i~~~~~~~~~-~~~~~~~-~~~~P~~i~~d~~g~l~vad  241 (260)
T d1rwia_         165 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTT-STVLPFT-GLNTPLAVAVDSDRTVYVAD  241 (260)
T ss_dssp             EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTE-EEEECTTCSC-CEECCCC-SCCCEEEEEECTTCCEEEEE
T ss_pred             ccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCE-EEEEeCCCCe-EEEEccC-CCCCeEEEEEeCCCCEEEEE
Confidence            7776665544443 34455688999999998888888888 8888754433 2233221 22467899999999987776


Q ss_pred             eCCCcEEEEEccc
Q 015198          280 SDKGTVHIFSLRV  292 (411)
Q Consensus       280 s~dg~I~vwd~~~  292 (411)
                      ..+++|+.++...
T Consensus       242 ~~~~rI~~i~~~~  254 (260)
T d1rwia_         242 RGNDRVVKLTSLE  254 (260)
T ss_dssp             GGGTEEEEECCCG
T ss_pred             CCCCEEEEEeCCC
Confidence            7777666555443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.00  E-value=3.1e-07  Score=80.11  Aligned_cols=224  Identities=8%  Similarity=-0.010  Sum_probs=141.7

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC-
Q 015198           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-  123 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~-  123 (411)
                      .+..+++.|||+++++.. ++.|..|+.+.  .....  .........+.+.+++.++++...+     +.+..|+... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g--~~~~~--~~~~~~~~gla~~~dG~l~v~~~~~-----~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG--NQQIH--ATVEGKVSGLAFTSNGDLVATGWNA-----DSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC--CEEEE--EECSSEEEEEEECTTSCEEEEEECT-----TSCEEEEEECT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC--CEEEE--EcCCCCcceEEEcCCCCeEEEecCC-----ceEEEEEeccc
Confidence            588999999999988888 88877777553  22221  1344567788899998887776554     6777776433 


Q ss_pred             -CcEEEEEe--ecCceeEEEEcCCeEEEE---EcCeEEEEEcCCceeeEEEecc--------CCCcceEEEccCCCceEE
Q 015198          124 -SRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL--------ANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       124 -~~~~~~~~--~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l  189 (411)
                       +.......  .......+.+.+++.+++   .++.+..+|...+.........        ........+.++++.  +
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~--l  177 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF--L  177 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE--E
T ss_pred             ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCc--e
Confidence             33322222  456688999999999888   4678888888766543332211        111233445555543  4


Q ss_pred             EEecCCCCeEEEEEcCCcc-e--EEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEE
Q 015198          190 ACPGLQRGQVRIEHFGLNM-I--KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~~~-~--~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (411)
                      .++....+.|+.++..... .  ............++++++|+++++...++. |..++. .++..........-...++
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~-V~~i~p-~G~~~~~~~~~~~~~~pt~  255 (302)
T d2p4oa1         178 YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS-VVRIAP-DRSTTIIAQAEQGVIGSTA  255 (302)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC-EEEECT-TCCEEEEECGGGTCTTEEE
T ss_pred             eeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCc-EEEECC-CCCEEEEEecCCCCCCceE
Confidence            4445567777765443321 1  111223344567999999998888888888 999975 4554333332113346889


Q ss_pred             EEe---CCCCCEEEEEeCC
Q 015198          267 IAL---SPNVQWLAVASDK  282 (411)
Q Consensus       267 l~~---spdg~~l~s~s~d  282 (411)
                      ++|   ++|++.|+.++..
T Consensus       256 vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         256 VAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEECCSTTTTTEEEEEECT
T ss_pred             EEEcCCCCCCCEEEEECCC
Confidence            999   6788888776654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.99  E-value=9.6e-10  Score=102.86  Aligned_cols=154  Identities=14%  Similarity=0.015  Sum_probs=112.2

Q ss_pred             eeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccCC---CcceEEEccCCCceEEEEec--------CCCCeEEEEE
Q 015198          136 VRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLAN---LRGLCCLSHHSSTSVLACPG--------LQRGQVRIEH  203 (411)
Q Consensus       136 i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~g--------~~dg~i~i~~  203 (411)
                      -..+.|.+++.++. .++.+.+||+.+++....+..+.-   ...+..+.++||++.|+++.        +.++.+.+|+
T Consensus        19 ~~~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          19 LYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCCCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ccCCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            34578999999888 788999999999987766654321   12345666677778887643        3356788899


Q ss_pred             cCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC----------------CCcceEEE
Q 015198          204 FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV----------------DRAEIYSI  267 (411)
Q Consensus       204 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~----------------~~~~v~~l  267 (411)
                      ...+.+..+..+...+..+.|||||+.||... ++. +++|+..+++..+....+.                ..+....+
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~-l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~  176 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NND-IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (470)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTE-EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             CCCCcccccccCCccccccccccCcceeeEee-ccc-ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence            99888888889999999999999999999865 567 9999998887665433210                11223557


Q ss_pred             EeCCCCCEEEEEeCCCc-EEEEEcc
Q 015198          268 ALSPNVQWLAVASDKGT-VHIFSLR  291 (411)
Q Consensus       268 ~~spdg~~l~s~s~dg~-I~vwd~~  291 (411)
                      .|||||++|+....|.+ +..|.+.
T Consensus       177 ~wSPDGk~ia~~~~d~~~v~~~~~~  201 (470)
T d2bgra1         177 WWSPNGTFLAYAQFNDTEVPLIEYS  201 (470)
T ss_dssp             EECTTSSEEEEEEEECTTCCEEEEE
T ss_pred             EECCCCCccceeEecCCcCceEEEE
Confidence            89999999998876543 5555443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=8.2e-08  Score=82.05  Aligned_cols=219  Identities=13%  Similarity=-0.005  Sum_probs=126.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEe--CCc--EEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCe
Q 015198           40 SDVDEIELISVSWNQDYGCFAAGT--SCG--FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (411)
Q Consensus        40 ~~~h~~~V~~l~~s~~g~~la~g~--dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~  115 (411)
                      +..+...+.+.+|||||+.||...  .+.  +.+.+..........   ..........|++++..++......  ....
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~i~~~~~~~--~~~~  108 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA---SFPRHNGAPAFSPDGSKLAFALSKT--GSLN  108 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE---CCSSCEEEEEECTTSSEEEEEECTT--SSCE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe---eeecccccceecCCCCeeeEeeecC--Cccc
Confidence            334566788999999999999766  333  445555543332222   3444555677888776555433220  0123


Q ss_pred             EEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----Ec--CeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      +..+.....................+++++..+.    .+  ..|.+.++..+... .+....  .......+++++..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~--~~~~~~~~spdg~~~  185 (269)
T d2hqsa1         109 LYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVSSDGKFM  185 (269)
T ss_dssp             EEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEECTTSSEE
T ss_pred             eeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeeccc--cccccccccccccee
Confidence            4444444444433333444444555666554443    23  35666776655332 222222  244555667777778


Q ss_pred             EEecCCCCeEEEEEc--CCcceEEEeccccceeEEEecCCCCEEEEEcCC---CeEEEEEECCCCceEEEEeCCCCCcce
Q 015198          190 ACPGLQRGQVRIEHF--GLNMIKLINAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (411)
                      ++.....+...++..  ..... .+..+........|+|||+.|+..+..   .. |+++++..+.. ..+..  ..+.+
T Consensus       186 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~-l~~~~~dg~~~-~~lt~--~~g~~  260 (269)
T d2hqsa1         186 VMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSV-LNLVSTDGRFK-ARLPA--TDGQV  260 (269)
T ss_dssp             EEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEE-EEEEETTSCCE-EECCC--SSSEE
T ss_pred             EEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcE-EEEEECCCCCE-EEEeC--CCCcE
Confidence            776666666666443  33333 344456667788999999988755433   35 88999876654 44554  45678


Q ss_pred             EEEEeCC
Q 015198          265 YSIALSP  271 (411)
Q Consensus       265 ~~l~~sp  271 (411)
                      ...+|||
T Consensus       261 ~~p~WSP  267 (269)
T d2hqsa1         261 KFPAWSP  267 (269)
T ss_dssp             EEEEECC
T ss_pred             EeEEeCC
Confidence            8899998

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.98  E-value=1.7e-07  Score=80.82  Aligned_cols=189  Identities=13%  Similarity=0.152  Sum_probs=126.4

Q ss_pred             EEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec-------CceeEEEEcCC-eEEEE----EcCeEEEE
Q 015198           90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-------SDVRSVKLSRD-RIVVV----LEHKIYVY  157 (411)
Q Consensus        90 ~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~-------~~i~~~~~~~~-~~~~~----~dg~i~iw  157 (411)
                      ...++.++++.++++....     +.|++|| .+|+.+..+...       .....+.+..+ +..++    .++.|..+
T Consensus        25 P~gvavd~dg~i~VaD~~n-----~rI~v~d-~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNN-----HRIQIFD-KEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGG-----TEEEEEC-TTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             ccEEEEcCCCCEEEEECCC-----CEEEEEe-CCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence            4567777777777775544     8999999 557877777421       12334444432 33333    35577777


Q ss_pred             EcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEe--ccccceeEEEecCCCCEEEEEc
Q 015198          158 SFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFTLTLDGLLLATAS  235 (411)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~--~~~~~i~~l~~sp~g~~l~s~s  235 (411)
                      +. .++....+.... ......++.++++.++++. ...+.+.+.+.+++.+..+.  .+......+++.++|+++++..
T Consensus        99 ~~-~g~~~~~~~~~~-~~~p~~~avd~~G~i~v~~-~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~  175 (279)
T d1q7fa_          99 NQ-YGQFVRKFGATI-LQHPRGVTVDNKGRIIVVE-CKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  175 (279)
T ss_dssp             CT-TSCEEEEECTTT-CSCEEEEEECTTSCEEEEE-TTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             cc-cccceeecCCCc-ccccceeccccCCcEEEEe-eccceeeEeccCCceeecccccccccccceeeeccceeEEeeec
Confidence            74 566666653322 1234556666677766653 45667777877887776663  3456678899999999888888


Q ss_pred             CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeC-CCcEEEEE
Q 015198          236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD-KGTVHIFS  289 (411)
Q Consensus       236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~I~vwd  289 (411)
                      ..+. |++||. +|+.+.++...........|++.++|+++++-.. ++.|.+|+
T Consensus       176 ~~~~-V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         176 RAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             GGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             cccc-eeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence            8888 999995 7788877753223446789999999997776544 44688887

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.91  E-value=3.1e-06  Score=74.17  Aligned_cols=197  Identities=13%  Similarity=0.053  Sum_probs=120.6

Q ss_pred             EEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-E------cCeEEEEEcCCc
Q 015198           91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-L------EHKIYVYSFVDL  162 (411)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~------dg~i~iwd~~~~  162 (411)
                      -.+.|++++.++++....     +.|..|+...++....+. .......++++++|.+++ .      .+.+...+....
T Consensus        43 EG~~~D~~G~Ly~~D~~~-----g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFE-----GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             EeCEECCCCCEEEEECCC-----CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            346677777666655444     889889987776555544 566788999999998776 2      234555555554


Q ss_pred             eeeEEEeccCCCcceEEEccCCCceEEEEecC-----CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEE-EcC
Q 015198          163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGL-----QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLAT-AST  236 (411)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s-~s~  236 (411)
                      ...............-.+..++++.+.+....     ..+.+...+.+++.+..+...-...+.|+|+|+++.|+. -+.
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc
Confidence            44443332222223445566677766543211     112344444455555554444445578999999986644 456


Q ss_pred             CCeEEEEEECCCC-ceEEEE-----eCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 015198          237 RGTLIRIFNTVDG-TRLQEV-----RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       237 dg~~I~vwd~~~~-~~~~~~-----~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~  294 (411)
                      .+. |+.||+... ......     ...........|++..+|++.++....+.|.+|+- .|+
T Consensus       198 ~~~-I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~  259 (319)
T d2dg1a1         198 ANR-LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGY  259 (319)
T ss_dssp             GTE-EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSC
T ss_pred             CCc-eEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCc
Confidence            677 999997642 221111     11102234678999999998888888999999994 454

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.89  E-value=4.2e-06  Score=73.32  Aligned_cols=245  Identities=9%  Similarity=-0.009  Sum_probs=148.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEEC
Q 015198           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~  121 (411)
                      ..-.+..++|.++|+++++.. .+.|..|+.+........ . ........+.+.+++.++++...+. ...+.+...+.
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-~-~~~~~p~gla~~~dG~l~va~~~~~-~~~~~i~~~~~  114 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-V-SHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATE  114 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-E-CSSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECT
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-e-CCCCCeeEEEECCCCCEEEEecCCC-ccceeEEEEcC
Confidence            344567899999999777666 888888877653322221 1 3334456788888887766543210 01245666665


Q ss_pred             CCCcEEEEEee---cCceeEEEEcCCeEEEEE---------cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEE
Q 015198          122 HQSRCIGEFAF---RSDVRSVKLSRDRIVVVL---------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       122 ~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (411)
                      ..+........   ......+.+.++|.+.+.         .+.++.++... +.+..+.....  ....+++++++..|
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~--~pnGia~s~dg~~l  191 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNIS--VANGIALSTDEKVL  191 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEES--SEEEEEECTTSSEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccc--eeeeeeeccccceE
Confidence            55555444432   345778999999987772         23466665443 33333322211  23345566666666


Q ss_pred             EEecCCCCeEEEEEcCC--cceEEE-------eccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCC-
Q 015198          190 ACPGLQRGQVRIEHFGL--NMIKLI-------NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-  259 (411)
Q Consensus       190 ~~~g~~dg~i~i~~~~~--~~~~~~-------~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-  259 (411)
                      .++-+..+.|..++.+.  ......       .........+++.++|++.++....+. |.+|| ..|+.+.++.... 
T Consensus       192 yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~-V~~~~-p~G~~l~~i~~P~~  269 (319)
T d2dg1a1         192 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFN-KRGYPIGQILIPGR  269 (319)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEEC-TTSCEEEEEECTTG
T ss_pred             EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE-EEEEC-CCCcEEEEEeCCCc
Confidence            55555678888765542  222111       111223467999999998888888898 99999 5899988886431 


Q ss_pred             ---CCcceEEEEeCCCCCEEEEEeCC----CcEEEEEcccccc
Q 015198          260 ---DRAEIYSIALSPNVQWLAVASDK----GTVHIFSLRVRVV  295 (411)
Q Consensus       260 ---~~~~v~~l~~spdg~~l~s~s~d----g~I~vwd~~~~~~  295 (411)
                         +...+++++|.+++..+++...+    +.-.||.++.+-+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~~~  312 (319)
T d2dg1a1         270 DEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAK  312 (319)
T ss_dssp             GGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSC
T ss_pred             CCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCCCc
Confidence               22357899999988877665542    3345665555443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.88  E-value=1.6e-06  Score=75.89  Aligned_cols=240  Identities=9%  Similarity=0.037  Sum_probs=141.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEe--------CCcEEEEecCCCcceEEeecC--CCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           44 EIELISVSWNQDYGCFAAGT--------SCGFRIYNCEPFKETFRRDLK--SGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        44 ~~~V~~l~~s~~g~~la~g~--------dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      -.....++|.++|+++++..        ++.|..|+.++..........  ........+.+.+++..++.+...     
T Consensus        17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-----   91 (314)
T d1pjxa_          17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-----   91 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred             CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-----
Confidence            33456789999999887643        356777777664433222110  111124567788876433333332     


Q ss_pred             CeEEEEECCCCcEEEEEe--ec----CceeEEEEcCCeEEEEEc------------------CeEEEEEcCCceeeEEEe
Q 015198          114 TKVIIWDDHQSRCIGEFA--FR----SDVRSVKLSRDRIVVVLE------------------HKIYVYSFVDLKLLHQIE  169 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~--~~----~~i~~~~~~~~~~~~~~d------------------g~i~iwd~~~~~~~~~~~  169 (411)
                      +.|...+...+. ...+.  ..    ...+.+.+.++|.+.+.|                  |.|+.++. .++......
T Consensus        92 ~~i~~~~~~g~~-~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~  169 (314)
T d1pjxa_          92 LGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT  169 (314)
T ss_dssp             TEEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE
T ss_pred             CeEEEEeCCCcE-EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC
Confidence            668888865543 22222  11    135779999998877622                  34555553 344333332


Q ss_pred             ccCCCcceEEEccCCCc--eEEEEecCCCCeEEEEEcCC-cceE---EE---ec-cccceeEEEecCCCCEEEEEcCCCe
Q 015198          170 TLANLRGLCCLSHHSST--SVLACPGLQRGQVRIEHFGL-NMIK---LI---NA-HDSHIACFTLTLDGLLLATASTRGT  239 (411)
Q Consensus       170 ~~~~~~~~~~~~~~~~~--~~l~~~g~~dg~i~i~~~~~-~~~~---~~---~~-~~~~i~~l~~sp~g~~l~s~s~dg~  239 (411)
                      .-.. ..-+++.+++++  ..|.++.+..+.|..++... ..+.   .+   .. +......+++..+|++.++....+.
T Consensus       170 ~~~~-pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~  248 (314)
T d1pjxa_         170 AFQF-PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EESS-EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             Ccce-eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE
Confidence            2221 234566665442  34555555677777754332 1111   11   11 1233567999999998887777888


Q ss_pred             EEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEE-EEEeCCCcEEEEEccccc
Q 015198          240 LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL-AVASDKGTVHIFSLRVRV  294 (411)
Q Consensus       240 ~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l-~s~s~dg~I~vwd~~~~~  294 (411)
                       |.+||...++.+..+..  ....+++++|.||++.| ++.+.+|.|..+++....
T Consensus       249 -I~~~dp~~g~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         249 -IEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             -EEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             -EEEEeCCCCEEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence             99999888877777765  33468899999999755 556677877777765543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.86  E-value=1.6e-06  Score=77.65  Aligned_cols=227  Identities=13%  Similarity=0.110  Sum_probs=122.9

Q ss_pred             EEEEEe---CCcEEEEecCCCcceEE--e--ecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCC-CcEEEE
Q 015198           58 CFAAGT---SCGFRIYNCEPFKETFR--R--DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-SRCIGE  129 (411)
Q Consensus        58 ~la~g~---dg~i~iw~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~-~~~~~~  129 (411)
                      .|++|+   .+.|.++.++.....+.  .  .+ .....+.-+.+++++..+.....      +.+..|.+.. +.....
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~-~~~~~~s~la~s~d~~~ly~~~~------~~~~~~~i~~~~~~~~~   76 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEI-PQDEPISWMTFDHERKNIYGAAM------KKWSSFAVKSPTEIVHE   76 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEEC-CTTCCCSEEEECTTSSEEEEEEB------TEEEEEEEEETTEEEEE
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeec-cCCCCCCEEEEcCCCCEEEEEeC------CcEEEEEEeCCCCeEEE
Confidence            356665   55677766654332221  1  11 22323334667877765554443      6677776543 333322


Q ss_pred             Ee--ecCceeEEEEcCCeEE--EE----EcCeEEEEEcCC-ceeeEE------------Ee--ccCCCcceEEEccCCCc
Q 015198          130 FA--FRSDVRSVKLSRDRIV--VV----LEHKIYVYSFVD-LKLLHQ------------IE--TLANLRGLCCLSHHSST  186 (411)
Q Consensus       130 ~~--~~~~i~~~~~~~~~~~--~~----~dg~i~iwd~~~-~~~~~~------------~~--~~~~~~~~~~~~~~~~~  186 (411)
                      ..  .......+.+++++..  ++    ..+.|..+.+.. +.....            ..  ..........+.++|++
T Consensus        77 ~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG  156 (365)
T d1jofa_          77 ASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE  156 (365)
T ss_dssp             EEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             eeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCC
Confidence            22  3445567788888873  33    245565554421 111111            10  01111234567778888


Q ss_pred             eEEEEecCCCCeEEEEEcCC--cce--EEEe--ccccceeEEEecCCCCEEEEEcC-CCeEEEEEECCCCceE--EE---
Q 015198          187 SVLACPGLQRGQVRIEHFGL--NMI--KLIN--AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRL--QE---  254 (411)
Q Consensus       187 ~~l~~~g~~dg~i~i~~~~~--~~~--~~~~--~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~--~~---  254 (411)
                      ++++++......|.++....  ...  ....  ........++|+|+|+++.+..+ ++. |.+|++..++..  ..   
T Consensus       157 ~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~-V~v~~~~~~~~~~~~~~~~  235 (365)
T d1jofa_         157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHS  235 (365)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEE
T ss_pred             CEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCE-EEEEEecCCCceEEEEeee
Confidence            88777665566777754332  221  1111  23456788999999998866654 566 999998765432  11   


Q ss_pred             EeC------------CCCCcceEEEEeCCCCCEEEEEeC-C-----CcEEEEEccc
Q 015198          255 VRR------------GVDRAEIYSIALSPNVQWLAVASD-K-----GTVHIFSLRV  292 (411)
Q Consensus       255 ~~~------------~~~~~~v~~l~~spdg~~l~s~s~-d-----g~I~vwd~~~  292 (411)
                      +..            .........+.++|||++|+++.. +     +.|..|++..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred             eccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC
Confidence            110            001124567899999999987642 1     2366666654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.84  E-value=9.9e-06  Score=69.96  Aligned_cols=206  Identities=10%  Similarity=-0.018  Sum_probs=133.5

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEeccC--CCcceEEEccCCCceEEE
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLA--NLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~  190 (411)
                      +.|.-||.++++. ..+.....+.++.+.+++.+++ ....+.++|..+++.........  .......+..++++.+.+
T Consensus        40 ~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~  118 (295)
T d2ghsa1          40 RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWI  118 (295)
T ss_dssp             TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEE
T ss_pred             CEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEE
Confidence            8899999887754 4566777889999998887777 67789999999887654433221  112345566677777665


Q ss_pred             EecC---CCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEE-cCCCeEEEEEECCCC------ceEEEEeCCCC
Q 015198          191 CPGL---QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDG------TRLQEVRRGVD  260 (411)
Q Consensus       191 ~~g~---~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~------~~~~~~~~~~~  260 (411)
                      .+..   ..+.-.++......+..+...-..-+.++|+++++.++.+ +..+. |+.|++...      +....+.....
T Consensus       119 ~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~-I~~~~~d~~~~~~~~~~~~~~~~~~~  197 (295)
T d2ghsa1         119 GTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR-LMRVPLDARTGLPTGKAEVFIDSTGI  197 (295)
T ss_dssp             EEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE-EEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred             EeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccce-eeEeeecccccccccceEEEeccCcc
Confidence            4321   1122233322222333333333445789999999866554 55666 998887421      22212222113


Q ss_pred             CcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCccccccc
Q 015198          261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRG  340 (411)
Q Consensus       261 ~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (411)
                      .+....+++..+|++.++.-..+.|..||- .++.                                             
T Consensus       198 ~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~---------------------------------------------  231 (295)
T d2ghsa1         198 KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH---------------------------------------------  231 (295)
T ss_dssp             SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE---------------------------------------------
T ss_pred             cccccceEEcCCCCEEeeeeCCCceEEecC-CCcE---------------------------------------------
Confidence            456789999999998877777888999984 4443                                             


Q ss_pred             ccCcccccccceEEEEeCCCceEEEEEc-cC-CEEEEEEe
Q 015198          341 VLPKYFSSEWSFAQFHIPEVTHFIAAFG-SQ-NTVVIVSM  378 (411)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~  378 (411)
                                 ...+++|......|+|. ++ +.|++++.
T Consensus       232 -----------~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         232 -----------IARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             -----------EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             -----------eeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence                       24788888778889996 45 77888765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.78  E-value=9.4e-06  Score=70.11  Aligned_cols=214  Identities=7%  Similarity=0.040  Sum_probs=139.2

Q ss_pred             EEEEEcCCCCEEE-EEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           48 ISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        48 ~~l~~s~~g~~la-~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      -...|.+....|. +-- .+.|.-||.++.... ...+ .  ..+..+.+.+++.+++++.       ..|.++|..+++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~-~--~~~~~i~~~~dg~l~va~~-------~gl~~~d~~tg~   89 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-P--FMGSALAKISDSKQLIASD-------DGLFLRDTATGV   89 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-S--SCEEEEEEEETTEEEEEET-------TEEEEEETTTCC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC-C--CCcEEEEEecCCCEEEEEe-------CccEEeecccce
Confidence            4567887655454 444 888999998875432 2323 2  2345566667777776643       568999999887


Q ss_pred             EEEEEee-----cCceeEEEEcCCeEEEEE-------cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          126 CIGEFAF-----RSDVRSVKLSRDRIVVVL-------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       126 ~~~~~~~-----~~~i~~~~~~~~~~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      .......     ...++.+.+.++|.+.+.       .+.-.+|.+..++.........   ....+.+++++..+.++.
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~---~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS---IPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES---SEEEEEECTTSCEEEEEE
T ss_pred             eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccC---CcceeeecCCCceEEEee
Confidence            6544431     235788999999987771       2345667666676554443322   223445555666666666


Q ss_pred             CCCCeEEEEEcCCc------ceEE---EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcce
Q 015198          194 LQRGQVRIEHFGLN------MIKL---INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (411)
Q Consensus       194 ~~dg~i~i~~~~~~------~~~~---~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (411)
                      +..+.|..++.+..      ....   +.+..+....+++..+|++.++.-..+. |..|| .+|+.+..+..  ....+
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~-V~~~d-p~G~~~~~i~l--P~~~~  242 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYD-TDGNHIARYEV--PGKQT  242 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEEC-TTCCEEEEEEC--SCSBE
T ss_pred             cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc-eEEec-CCCcEeeEecC--CCCce
Confidence            67788887655431      1111   1233456788999999998777767788 99999 58999988886  33468


Q ss_pred             EEEEeC-CCCCEEEEE
Q 015198          265 YSIALS-PNVQWLAVA  279 (411)
Q Consensus       265 ~~l~~s-pdg~~l~s~  279 (411)
                      ++++|- +|.+.|+..
T Consensus       243 T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         243 TCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEEEESTTSCEEEEE
T ss_pred             EEEEEeCCCCCEEEEE
Confidence            999996 677766544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=5.4e-05  Score=63.37  Aligned_cols=221  Identities=13%  Similarity=0.154  Sum_probs=150.6

Q ss_pred             CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcC
Q 015198           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR  143 (411)
Q Consensus        64 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~  143 (411)
                      ...|.|.|+.......++.. .....+  |  +|....++--+.      ..+.++|+++.+.++.+.....|.--.|-.
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi-~AdsAI--M--hP~~~IiALrag------~~LQiFnletK~klks~~~~e~VvfWkWis  112 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI-SADSAI--M--NPASKVIALKAG------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  112 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC-CCSEEE--E--CSSSSEEEEEET------TEEEEEETTTTEEEEEEECSSCCCEEEESS
T ss_pred             CceEEEEECCCCCcceeccc-chhhhh--c--CCCCcEEEEecC------CeEEEEehhHhhhhceEEcCCCcEEEEecC
Confidence            45688899887666666554 222222  2  343333332222      799999999999999999888998888876


Q ss_pred             CeEEEE-EcCeEEEEEcCC-ceeeEEEeccC--CCcceEEEccCCCceEEEEec------CCCCeEEEEEcCCcceEEEe
Q 015198          144 DRIVVV-LEHKIYVYSFVD-LKLLHQIETLA--NLRGLCCLSHHSSTSVLACPG------LQRGQVRIEHFGLNMIKLIN  213 (411)
Q Consensus       144 ~~~~~~-~dg~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g------~~dg~i~i~~~~~~~~~~~~  213 (411)
                      +..+.. .+..|+-|+++. .++.+.+..|.  ....++.+..+++.++++..|      .-.|.+.++....+..+.++
T Consensus       113 ~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ie  192 (327)
T d1utca2         113 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  192 (327)
T ss_dssp             SSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC
T ss_pred             CCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccc
Confidence            665555 899999999943 24566665443  235678888888888887655      23467788999989999999


Q ss_pred             ccccceeEEEecCCC---CEEEEEc---CCCeEEEEEECCCCc--------eEEEE--eCCCCCcceEEEEeCCCCCEEE
Q 015198          214 AHDSHIACFTLTLDG---LLLATAS---TRGTLIRIFNTVDGT--------RLQEV--RRGVDRAEIYSIALSPNVQWLA  277 (411)
Q Consensus       214 ~~~~~i~~l~~sp~g---~~l~s~s---~dg~~I~vwd~~~~~--------~~~~~--~~~~~~~~v~~l~~spdg~~l~  277 (411)
                      +|.+....+.+.-+.   ++++.+.   ..+. ++|.++....        ....+  .......-.-++..++.-..+.
T Consensus       193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~k-LhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiy  271 (327)
T d1utca2         193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  271 (327)
T ss_dssp             CSEEEEEEECCTTCSSCEEEEEEEEEETTEEE-EEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEE
T ss_pred             ceeeeeEEEEcCCCCCCceEEEEEECCCCCcE-EEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEE
Confidence            998887777664322   2343332   2245 8899886521        11111  1111223456788888888899


Q ss_pred             EEeCCCcEEEEEccccccC
Q 015198          278 VASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       278 s~s~dg~I~vwd~~~~~~~  296 (411)
                      ..+.-|.|++||+.++.+.
T Consensus       272 viTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         272 LITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEETTSEEEEEETTTCCEE
T ss_pred             EEecCcEEEEEEcccccEE
Confidence            9999999999999999865

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.69  E-value=1.4e-05  Score=69.62  Aligned_cols=238  Identities=8%  Similarity=0.030  Sum_probs=137.6

Q ss_pred             EEeccCCeEEEEecCCC--CCCCCCeEEEEECCCCcEEEEEe-----ecCceeEEEEcCCeEE-EE--EcCeEEEEEcCC
Q 015198           92 EMLFRCNILALVGAGDN--SQYPPTKVIIWDDHQSRCIGEFA-----FRSDVRSVKLSRDRIV-VV--LEHKIYVYSFVD  161 (411)
Q Consensus        92 ~~~~~~~~~~l~s~~~d--~~~~d~~i~vwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~~-~~--~dg~i~iwd~~~  161 (411)
                      .++|.+++.++++....  ....++.|..||..+++......     ....-..+.+.+++.. ++  ..+.|..++...
T Consensus        22 Gpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g  101 (314)
T d1pjxa_          22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDG  101 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTS
T ss_pred             EeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCC
Confidence            34677777666543221  00123679999988876544432     1234568999998753 33  345688888755


Q ss_pred             ceeeEEEeccCCC--c-ceEEEccCCCceEEEEecC--------------CCCeEEEEEcCCcceEEEeccccceeEEEe
Q 015198          162 LKLLHQIETLANL--R-GLCCLSHHSSTSVLACPGL--------------QRGQVRIEHFGLNMIKLINAHDSHIACFTL  224 (411)
Q Consensus       162 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~g~--------------~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~  224 (411)
                      .... .+......  . ....+..++++.+.++...              ..|.|+.++.+++..... ..-..-+.++|
T Consensus       102 ~~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~-~~~~~pNGi~~  179 (314)
T d1pjxa_         102 TFEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD-TAFQFPNGIAV  179 (314)
T ss_dssp             CEEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE-EEESSEEEEEE
T ss_pred             cEEE-EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEee-CCcceeeeeEE
Confidence            4322 22111111  1 1223444556655543211              123444444444433322 22333467899


Q ss_pred             cCCCC-----EEEEEcCCCeEEEEEECCCCceEE------EEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 015198          225 TLDGL-----LLATASTRGTLIRIFNTVDGTRLQ------EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (411)
Q Consensus       225 sp~g~-----~l~s~s~dg~~I~vwd~~~~~~~~------~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~  293 (411)
                      +|++.     ++++-+..+. |+.||+.....+.      .+... .......+++..+|+++++....+.|.+||-+.+
T Consensus       180 ~~d~d~~~~~lyv~d~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~-~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g  257 (314)
T d1pjxa_         180 RHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPGT-HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCCC-SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred             CCCCCcceeEEEEEeecccc-eEEeeccCccccceeeEEEEcccc-ccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC
Confidence            88764     4455566777 9999876443222      11111 2334678999999998888778888999987766


Q ss_pred             ccCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccC-CE
Q 015198          294 VVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NT  372 (411)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  372 (411)
                      ...                                                        ..+.+|......|+|.++ +.
T Consensus       258 ~~~--------------------------------------------------------~~i~~p~~~~t~~afg~d~~~  281 (314)
T d1pjxa_         258 QPK--------------------------------------------------------MRIRCPFEKPSNLHFKPQTKT  281 (314)
T ss_dssp             SCS--------------------------------------------------------EEEECSSSCEEEEEECTTSSE
T ss_pred             EEE--------------------------------------------------------EEEECCCCCEEEEEEeCCCCE
Confidence            532                                                        245666656678899988 56


Q ss_pred             EEEEEe-CCcEEEEEEec
Q 015198          373 VVIVSM-DGSFYRCSFDP  389 (411)
Q Consensus       373 ~~~~~~-dg~~~~~~~~~  389 (411)
                      |+++.. +|.|+.+.+..
T Consensus       282 lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         282 IFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEETTTTEEEEEECSS
T ss_pred             EEEEECCCCcEEEEECCC
Confidence            767665 58777766654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.68  E-value=2.3e-06  Score=74.38  Aligned_cols=191  Identities=10%  Similarity=0.004  Sum_probs=119.2

Q ss_pred             EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCce-e
Q 015198           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-L  164 (411)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~~-~  164 (411)
                      .+..+++.+++.++++...+     ++|..|+. .++..........+.+++|++++.+++   .++.+..++..... .
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~-----~~I~~i~p-~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEV-----GEIVSITP-DGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTT-----TEEEEECT-TCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcCCEEECCCCCEEEEeCCC-----CEEEEEeC-CCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc
Confidence            45567889999888887776     99999984 455544455778899999999998777   46777777764321 2


Q ss_pred             eEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEec-----------cccceeEEEecCCCCEEEE
Q 015198          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA-----------HDSHIACFTLTLDGLLLAT  233 (411)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~-----------~~~~i~~l~~sp~g~~l~s  233 (411)
                      ...+...........+..++++.+++. .+.++.+..++...........           .......+.++. +.++++
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~~g~~~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~  180 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLSDTQYLTA-DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVS  180 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSEEEEE-ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEE
T ss_pred             eeeccccCCccccceeEEccCCCEEee-ccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cceeee
Confidence            222222222223456666777776654 4456666665555433222211           112344555543 335556


Q ss_pred             EcCCCeEEEEEECCCCceE---EEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 015198          234 ASTRGTLIRIFNTVDGTRL---QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (411)
Q Consensus       234 ~s~dg~~I~vwd~~~~~~~---~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~  291 (411)
                      .+..+. |+.+++......   ..+.   .......+++.++|+++++...++.|..++.+
T Consensus       181 ~~~~~~-i~~~~~~~~~~~~~~~~~~---~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         181 NTEKML-LLRIPVDSTDKPGEPEIFV---EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             ETTTTE-EEEEEBCTTSCBCCCEEEE---ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             cCCCCe-EEecccccccccccccccc---CCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            666777 888887654322   1222   12245679999999988888888888888654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.1e-06  Score=81.40  Aligned_cols=225  Identities=11%  Similarity=0.043  Sum_probs=132.3

Q ss_pred             EEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCC-CCEEEEEEeccCCeEEEEecCC-CCCC---CCCeEEEEECCCCc
Q 015198           51 SWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGD-NSQY---PPTKVIIWDDHQSR  125 (411)
Q Consensus        51 ~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~-d~~~---~d~~i~vwd~~~~~  125 (411)
                      .|.+++.++....+|.|.+|++.+.+......... ....+....++||+..++...+ ...+   ..+.+.++|+.+++
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            58888887765558899999998765533322211 2224455667888765443221 1111   23789999999887


Q ss_pred             EEEEEe---ecCceeEEEEcCCeEEEE--EcCeEEEEEcCCceeeEEEeccCCC-c---------------ceEEEccCC
Q 015198          126 CIGEFA---FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANL-R---------------GLCCLSHHS  184 (411)
Q Consensus       126 ~~~~~~---~~~~i~~~~~~~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~  184 (411)
                      ......   ....+....|+|||..++  .++.|++.+..+++.++........ +               ...++-|+|
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP  182 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence            544322   234566788999999888  8999999998776655544322111 0               124566788


Q ss_pred             CceEEEEecCCCCeEEE---------------------------------EEcCCcceEEEe-------ccccceeEEEe
Q 015198          185 STSVLACPGLQRGQVRI---------------------------------EHFGLNMIKLIN-------AHDSHIACFTL  224 (411)
Q Consensus       185 ~~~~l~~~g~~dg~i~i---------------------------------~~~~~~~~~~~~-------~~~~~i~~l~~  224 (411)
                      +++.||+.-..+..|..                                 .+..........       .....+..+.|
T Consensus       183 Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W  262 (465)
T d1xfda1         183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW  262 (465)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred             CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEE
Confidence            88888875322222222                                 222111111110       11223677899


Q ss_pred             cCCCCEEEEEcC-CC--eEEEEEECCCCceEEEEeCCCCCcce----EEEEeCCCCCEE
Q 015198          225 TLDGLLLATAST-RG--TLIRIFNTVDGTRLQEVRRGVDRAEI----YSIALSPNVQWL  276 (411)
Q Consensus       225 sp~g~~l~s~s~-dg--~~I~vwd~~~~~~~~~~~~~~~~~~v----~~l~~spdg~~l  276 (411)
                      ++++++++.... +.  ..|.++|..+|+....+... ..+.|    ....|++||+.+
T Consensus       263 ~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~-~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         263 ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSE
T ss_pred             cCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc-CCceEeccCCceeEccCCCee
Confidence            999986665432 21  13888999999876554432 22222    345789999854

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.58  E-value=3.9e-06  Score=71.15  Aligned_cols=193  Identities=9%  Similarity=0.000  Sum_probs=112.9

Q ss_pred             EEEEEEeccCCeEEEEe-cCCCCCCCCCeEEEEECCCCcEEEE-EeecCceeEEEEcCCeEEEE---EcCeEEEEEcCCc
Q 015198           88 FRIVEMLFRCNILALVG-AGDNSQYPPTKVIIWDDHQSRCIGE-FAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL  162 (411)
Q Consensus        88 ~~~~~~~~~~~~~~l~s-~~~d~~~~d~~i~vwd~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~---~dg~i~iwd~~~~  162 (411)
                      .....+++++++.++++ ....     +.+..++......... .........+++++++.+++   ..+.+++++..+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSS-----CEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCC-----CEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc
Confidence            34566777777765544 4443     6777776443332221 11234567889999888777   3344555544443


Q ss_pred             eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCcceEEEe-ccccceeEEEecCCCCEEEEEcCCCeEE
Q 015198          163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLI  241 (411)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I  241 (411)
                      ..+......   .....++.++++.+++. ...+..+......+.....+. ........++++++|+++++...++. |
T Consensus        89 ~~~~~~~~~---~~p~~iavd~~g~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~-i  163 (260)
T d1rwia_          89 QTVLPFDGL---NYPEGLAVDTQGAVYVA-DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-V  163 (260)
T ss_dssp             CEECCCCSC---CSEEEEEECTTCCEEEE-EGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTE-E
T ss_pred             eeeeeeeee---eecccccccccceeEee-ccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccc-c
Confidence            333222211   23445566666666554 334455555554443333322 22344578999999998888888888 9


Q ss_pred             EEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 015198          242 RIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (411)
Q Consensus       242 ~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~  292 (411)
                      ..+|....... .+... .-.....|++.++|+++++....+.|..++...
T Consensus       164 ~~~d~~~~~~~-~~~~~-~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         164 VKLEAESNNQV-VLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             EEECTTTCCEE-ECCCS-SCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             cccccccceee-eeecc-ccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            99997654433 33221 334678999999999888887788788776544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.50  E-value=7.8e-06  Score=69.54  Aligned_cols=231  Identities=9%  Similarity=-0.033  Sum_probs=124.3

Q ss_pred             EEcCC--CCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCC-CCCCCCCeEEEEECCCCcEE
Q 015198           51 SWNQD--YGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD-NSQYPPTKVIIWDDHQSRCI  127 (411)
Q Consensus        51 ~~s~~--g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~~~d~~i~vwd~~~~~~~  127 (411)
                      ..+||  |+.+|...++.|.+.+++..+.. .  +..+........|+||+..|+-... +.......|.+++..+++..
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~--Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR-K--IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEE-E--EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEE-E--EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            45788  99999888888888898875432 2  2255566788899999876664321 10001235888888777665


Q ss_pred             EEEee-------cCceeEEEEcCCeEEEE-E--------cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEE
Q 015198          128 GEFAF-------RSDVRSVKLSRDRIVVV-L--------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (411)
Q Consensus       128 ~~~~~-------~~~i~~~~~~~~~~~~~-~--------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (411)
                      +....       ........|+|+++.++ .        ...+...+...+......   ..... ..+.+ +.+..++.
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~-~~~~~~~~  156 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPAT-HILFA-DGRRVIGR  156 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCS-EEEEE-TTEEEEEE
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccc-eeeec-CCCeEEEe
Confidence            43221       23456788999998887 1        223555555544432211   11111 11111 12223322


Q ss_pred             ecCCC----------CeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcC--CCeEEEEEECCCCceEEEEeCCC
Q 015198          192 PGLQR----------GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST--RGTLIRIFNTVDGTRLQEVRRGV  259 (411)
Q Consensus       192 ~g~~d----------g~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~--dg~~I~vwd~~~~~~~~~~~~~~  259 (411)
                      .....          ....+.............+........++++.. +.....  ... |.++|+.+++.. .+... 
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-l~~~d~~g~~~~-~lt~~-  232 (281)
T d1k32a2         157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRI-YFITDIDGFGQ-IYSTDLDGKDLR-KHTSF-  232 (281)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEE-EEEECTTSSCE-EEEEETTSCSCE-ECCCC-
T ss_pred             eccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecccc-ceecccccccc-eEEEeCCCCceE-EeecC-
Confidence            11111          011111122222233333344444555655542 222222  234 888898766654 33321 


Q ss_pred             CCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      ....+  ..|+|||+.|+.. .++.|+++|+.+++..
T Consensus       233 ~~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         233 TDYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             CSSCE--EEEEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred             CCccc--ccCcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence            22233  4689999988764 4678999999988765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.2e-06  Score=78.18  Aligned_cols=195  Identities=9%  Similarity=-0.013  Sum_probs=114.9

Q ss_pred             eccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe----ecCceeEEEEcCCeEEEE--E----------cCeEEEE
Q 015198           94 LFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV--L----------EHKIYVY  157 (411)
Q Consensus        94 ~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~--~----------dg~i~iw  157 (411)
                      .|.+++.++.. ..+     |.|.+||+.+++....+.    ....+....++||++.++  .          .+.+.++
T Consensus        23 ~W~~~~~~~~~-~~~-----g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          23 KWISDTEFIYR-EQK-----GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CBSSSSCBCCC-CSS-----SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             EEeCCCcEEEE-eCC-----CcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence            35555544433 223     899999998887654444    234677889999998776  2          3678999


Q ss_pred             EcCCceeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCCc-ceEEEe-ccccc-----------------
Q 015198          158 SFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLIN-AHDSH-----------------  218 (411)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~-~~~~~-----------------  218 (411)
                      |+.+++.............+....++|+|..||+.  .++.|.+.+..+. .++... +....                 
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv--~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~  174 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI--FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE--ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             EccCCceeeccCccCCccccceeeeccCCceEEEE--ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccc
Confidence            99887654332222222222335567777788886  4677877544333 332222 11111                 


Q ss_pred             eeEEEecCCCCEEEEEcCCC-e--------------------------------EEEEEECCCCceEEEEeCC----CCC
Q 015198          219 IACFTLTLDGLLLATASTRG-T--------------------------------LIRIFNTVDGTRLQEVRRG----VDR  261 (411)
Q Consensus       219 i~~l~~sp~g~~l~s~s~dg-~--------------------------------~I~vwd~~~~~~~~~~~~~----~~~  261 (411)
                      -..+.|||||++||....|. .                                .+.++|+.++.........    ...
T Consensus       175 ~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~  254 (465)
T d1xfda1         175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (465)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccc
Confidence            14677999999998764321 1                                2455565544332211110    011


Q ss_pred             cceEEEEeCCCCCEEEEEeC-C---CcEEEEEccccccC
Q 015198          262 AEIYSIALSPNVQWLAVASD-K---GTVHIFSLRVRVVG  296 (411)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~-d---g~I~vwd~~~~~~~  296 (411)
                      ..+..+.|++++++++.... +   ..|.++|..+++..
T Consensus       255 ~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             ceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence            24678999999987665433 2   25888898888754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.09  E-value=6.1e-05  Score=63.70  Aligned_cols=80  Identities=5%  Similarity=-0.060  Sum_probs=53.1

Q ss_pred             CeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE----Ec-----CeEEEEEcCCceeeEEEecc----CCCcceEEE
Q 015198          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LE-----HKIYVYSFVDLKLLHQIETL----ANLRGLCCL  180 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d-----g~i~iwd~~~~~~~~~~~~~----~~~~~~~~~  180 (411)
                      +.|.+.|+..++..+...+...+....|+|||+.++    .+     ..|++++..+++..+.....    .........
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~  100 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVA  100 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEE
T ss_pred             CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcccccccc
Confidence            789999999888765555778889999999999888    12     35888888777654332111    011122345


Q ss_pred             ccCCCceEEEEec
Q 015198          181 SHHSSTSVLACPG  193 (411)
Q Consensus       181 ~~~~~~~~l~~~g  193 (411)
                      .++++++.|+++.
T Consensus       101 ~~spdg~~l~~~~  113 (281)
T d1k32a2         101 GFDPDGNLIISTD  113 (281)
T ss_dssp             EECTTCCEEEEEC
T ss_pred             ccCCCCCEEEEEE
Confidence            5666777777653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.97  E-value=0.0033  Score=52.42  Aligned_cols=224  Identities=16%  Similarity=0.181  Sum_probs=139.0

Q ss_pred             EEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEecc-CCeEEEEecCCCCCCCCCeEEEEECCC-CcE
Q 015198           49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQ-SRC  126 (411)
Q Consensus        49 ~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~~~d~~i~vwd~~~-~~~  126 (411)
                      +.-.+|..+.||.=....++|||+++..++....+ ..  .++-+.|- ++...+++.        ..|+-|+++. ..+
T Consensus        67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~e--~VvfWkWis~~~L~lVT~--------taVYHW~~~g~s~P  135 (327)
T d1utca2          67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TD--DVTFWKWISLNTVALVTD--------NAVYHWSMEGESQP  135 (327)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SS--CCCEEEESSSSEEEEECS--------SEEEEEESSSSCCC
T ss_pred             hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-CC--CcEEEEecCCCEEEEEcC--------CceEEEcccCCCCc
Confidence            44567888888877778899999998666655554 22  44555554 556677774        7899999854 356


Q ss_pred             EEEEe-e----cCceeEEEEcCCeEEEE----------EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCc-eEEE
Q 015198          127 IGEFA-F----RSDVRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST-SVLA  190 (411)
Q Consensus       127 ~~~~~-~----~~~i~~~~~~~~~~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  190 (411)
                      .+.+. |    ...|-.-..+++.++++          ..|.+.+|..+. +.-+.+++|........+.-+++. .+++
T Consensus       136 ~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~  214 (327)
T d1utca2         136 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFC  214 (327)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEE
T ss_pred             hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEE
Confidence            66665 3    45777888899998887          257889999765 444566666542222211111111 2222


Q ss_pred             Ee--cCCCCeEEEEEcCCc----c---eEEEe------ccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEE
Q 015198          191 CP--GLQRGQVRIEHFGLN----M---IKLIN------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (411)
Q Consensus       191 ~~--g~~dg~i~i~~~~~~----~---~~~~~------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (411)
                      ++  +...+.+.|-.....    .   .+...      ...+---++.+++.-..+..-+.-|. |++||+.++.++..-
T Consensus       215 fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~-i~lyDleTgt~i~~n  293 (327)
T d1utca2         215 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMN  293 (327)
T ss_dssp             EEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcE-EEEEEcccccEEEEe
Confidence            21  223356666333221    1   11111      11222346778887788888899999 999999999998876


Q ss_pred             eCCCCCcceEEEEeCCCCCEEEEEeCCCcEEE
Q 015198          256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHI  287 (411)
Q Consensus       256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~v  287 (411)
                      +-  ....|...+-..+..=++....+|.|.-
T Consensus       294 RI--s~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         294 RI--SGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EC--CSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             ec--CCCceEEeccCCCCceEEEECCCCeEEE
Confidence            65  4446665454455445666667776543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.89  E-value=0.0048  Score=57.80  Aligned_cols=234  Identities=9%  Similarity=-0.013  Sum_probs=128.0

Q ss_pred             EEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEecc---CCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec-
Q 015198           59 FAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR---CNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-  133 (411)
Q Consensus        59 la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~-  133 (411)
                      +..+. ++.+.-.|.++++.+.......+......+.-.   -++.+++..........|.|+.+|.++|+.+..+... 
T Consensus       131 v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~  210 (573)
T d1kb0a2         131 VYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVP  210 (573)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred             EEEEecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeecc
Confidence            44555 777776777777766655432222111111111   1344444432221223489999999999999887511 


Q ss_pred             -------------------------------Cce-eEEEEcCCeEEEE----------------------EcCeEEEEEc
Q 015198          134 -------------------------------SDV-RSVKLSRDRIVVV----------------------LEHKIYVYSF  159 (411)
Q Consensus       134 -------------------------------~~i-~~~~~~~~~~~~~----------------------~dg~i~iwd~  159 (411)
                                                     ..+ ....+.++...+.                      ....|...|+
T Consensus       211 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~  290 (573)
T d1kb0a2         211 GDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP  290 (573)
T ss_dssp             CCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred             ccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecc
Confidence                                           011 1234455433332                      0235777888


Q ss_pred             CCceeeEEEeccCCCc---------ceEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccc-------------
Q 015198          160 VDLKLLHQIETLANLR---------GLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHD-------------  216 (411)
Q Consensus       160 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~-------------  216 (411)
                      ++++....++...+..         ....+..+.....+++.+..+|.+++++.. ++.+.......             
T Consensus       291 ~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~  370 (573)
T d1kb0a2         291 DTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKP  370 (573)
T ss_dssp             TTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCE
T ss_pred             cchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccce
Confidence            8888877765433222         222333333333344557788888886644 33332221100             


Q ss_pred             ----------------------cceeEEEecCCCCEEEEEcCC-------------------------------------
Q 015198          217 ----------------------SHIACFTLTLDGLLLATASTR-------------------------------------  237 (411)
Q Consensus       217 ----------------------~~i~~l~~sp~g~~l~s~s~d-------------------------------------  237 (411)
                                            ..-..++++|+..+++....+                                     
T Consensus       371 ~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p  450 (573)
T d1kb0a2         371 IGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEP  450 (573)
T ss_dssp             EECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSC
T ss_pred             eeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCC
Confidence                                  001124567766655543221                                     


Q ss_pred             ------CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          238 ------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       238 ------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                            |. |.-||+.+|+.+...+...   +...=..+-.|.+|++|+.||.++.||.++|++.
T Consensus       451 ~~~~~~G~-l~AiD~~tGk~~W~~~~~~---p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         451 PKSKPFGR-LLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             CCSCCEEE-EEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCCCccc-EEEeCCCCCceEeeecCCC---CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence                  34 7788888888887776421   1111122336778888999999999999999864

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.85  E-value=0.0041  Score=58.08  Aligned_cols=234  Identities=11%  Similarity=0.019  Sum_probs=132.1

Q ss_pred             EEEEEe-CCcEEEEecCCCcceEEeecCCCCEEEEEEecc---CCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec
Q 015198           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR---CNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR  133 (411)
Q Consensus        58 ~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~  133 (411)
                      .++.+. ++.+.-.|..+++.+........... ..+...   -++.+++..........|.|.-+|.++|+.+..+...
T Consensus       119 ~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~-~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  197 (560)
T d1kv9a2         119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP-YSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV  197 (560)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSCTTSS-CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEeCCCEEEEEECCCCcEEeccCccCcccc-eeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeec
Confidence            455555 77777777777666655543111110 001111   1344444432221223478999999999999988621


Q ss_pred             -------------------------------Cce-eEEEEcCCeEEEE----------------------EcCeEEEEEc
Q 015198          134 -------------------------------SDV-RSVKLSRDRIVVV----------------------LEHKIYVYSF  159 (411)
Q Consensus       134 -------------------------------~~i-~~~~~~~~~~~~~----------------------~dg~i~iwd~  159 (411)
                                                     ..+ ..+.+.+...++.                      ....|.-.|+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~  277 (560)
T d1kv9a2         198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP  277 (560)
T ss_dssp             CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred             cccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecC
Confidence                                           011 1234455443332                      0246788899


Q ss_pred             CCceeeEEEeccCCCcc---------eEEEccCCCceEEEEecCCCCeEEEEEcC-CcceEEEeccc-------------
Q 015198          160 VDLKLLHQIETLANLRG---------LCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHD-------------  216 (411)
Q Consensus       160 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~-------------  216 (411)
                      ++++....++...+...         ...+........++..+..+|.+++.+.. ++.+.....-.             
T Consensus       278 ~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~  357 (560)
T d1kv9a2         278 DTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGR  357 (560)
T ss_dssp             TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCC
T ss_pred             CccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhcc
Confidence            99998877765443322         23333344444455557788999885544 33332221000             


Q ss_pred             -----------------------cceeEEEecCCCCEEEEEcC------------------------------------C
Q 015198          217 -----------------------SHIACFTLTLDGLLLATAST------------------------------------R  237 (411)
Q Consensus       217 -----------------------~~i~~l~~sp~g~~l~s~s~------------------------------------d  237 (411)
                                             ..-...+++|+..+++....                                    .
T Consensus       358 ~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  437 (560)
T d1kv9a2         358 PVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVS  437 (560)
T ss_dssp             EEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCE
T ss_pred             ccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccc
Confidence                                   00113456677666654332                                    2


Q ss_pred             CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      |. |.-||+.+|+.+..+....+   ...-.+.-.+.++++|+.||.++-+|.++|+..
T Consensus       438 G~-l~A~D~~tGk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         438 GA-LLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             EE-EEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cc-eEEEeCCCCeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence            45 88899999998877764322   222122334678888999999999999999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=0.0079  Score=50.07  Aligned_cols=218  Identities=8%  Similarity=-0.081  Sum_probs=124.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEE
Q 015198           43 DEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd  120 (411)
                      +...+..|+|.+..+.|....  ++.|+..+++.................+++.|..+..+.+....      +.|.+.+
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~------~~I~~~~  107 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQL------DRIEVAK  107 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTT------TEEEEEE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCC------CEEEEEe
Confidence            344578899998888877766  77788888875443322221113344455555566666555433      8999999


Q ss_pred             CCCCcEEEEEe-ecCceeEEEEcCCeEEEE-E-----cCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEec
Q 015198          121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (411)
Q Consensus       121 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (411)
                      +........+. .......++++|...++. .     ...|.-.++...... .+... .-.....++.++.+..|..+-
T Consensus       108 ~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i~~~-~~~~P~glaiD~~~~~lYw~d  185 (263)
T d1npea_         108 MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQD-NLGLPNGLTFDAFSSQLCWVD  185 (263)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECT-TCSCEEEEEEETTTTEEEEEE
T ss_pred             cCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-eeeee-cccccceEEEeecCcEEEEEe
Confidence            77655433333 246788999988655554 2     123555555433322 23211 112334555555555565554


Q ss_pred             CCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC
Q 015198          194 LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (411)
Q Consensus       194 ~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (411)
                      ...+.|..-+.++.....+.........|++. ++.+..+-...+. |...|..+++.+..+... .......|...+
T Consensus       186 ~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~-I~~~~~~~g~~~~~~~~~-~~~~~~gi~v~~  260 (263)
T d1npea_         186 AGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPH-KQTRLYGITIAL  260 (263)
T ss_dssp             TTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTE-EEEEETTTTEEEEEECCS-SCCCCCCEEEEC
T ss_pred             CCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCE-EEEEECCCCccceEECCC-CCCCcceEEEeC
Confidence            56678887777765554443222233577775 3434444445667 999999888887666532 222344555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.61  E-value=0.012  Score=51.68  Aligned_cols=188  Identities=10%  Similarity=0.049  Sum_probs=112.5

Q ss_pred             CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe-ec------------------C---------------------c--
Q 015198           98 NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FR------------------S---------------------D--  135 (411)
Q Consensus        98 ~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~-~~------------------~---------------------~--  135 (411)
                      +...+.+|+..     |.|+|+-+.+++.+..+. +.                  .                     .  
T Consensus        12 eyy~f~SgG~s-----G~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~H   86 (459)
T d1fwxa2          12 DYYGFWSSGQS-----GEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLH   86 (459)
T ss_dssp             SEEEEECCBTT-----CEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBC
T ss_pred             cEEEEeeCCcc-----ceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcC
Confidence            45667788877     999999999888887775 21                  0                     0  


Q ss_pred             eeEEEEcC---CeEEEE----EcCeEEEEEcCCceeeEEEeccCC-CcceEEEccCCCceEEEEecC------CC-----
Q 015198          136 VRSVKLSR---DRIVVV----LEHKIYVYSFVDLKLLHQIETLAN-LRGLCCLSHHSSTSVLACPGL------QR-----  196 (411)
Q Consensus       136 i~~~~~~~---~~~~~~----~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~------~d-----  196 (411)
                      --.+.+..   ||++++    .++.|-+.|+++.+..+.+..... ....+.....++..++++.+.      .|     
T Consensus        87 HP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~  166 (459)
T d1fwxa2          87 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  166 (459)
T ss_dssp             CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             CCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCcccc
Confidence            01233433   788888    578999999999998776654321 123344555666667765432      01     


Q ss_pred             ------CeEEEEEcC-CcceEEEeccccceeEEEecCCCCEEEEEcCCCe--------------EEE-------------
Q 015198          197 ------GQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGT--------------LIR-------------  242 (411)
Q Consensus       197 ------g~i~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~--------------~I~-------------  242 (411)
                            +.+.+.+.. .+...++.. ......+.++++|+++++.+.+..              .+.             
T Consensus       167 d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~  245 (459)
T d1fwxa2         167 DVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  245 (459)
T ss_dssp             CGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             chhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence                  122222222 233333332 335667899999999888764311              133             


Q ss_pred             ----------EEECCCC---ceEEEEeCCCCCcceEEEEeCCCCCEEEEEe-CCCcEEEEEccccc
Q 015198          243 ----------IFNTVDG---TRLQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRV  294 (411)
Q Consensus       243 ----------vwd~~~~---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~  294 (411)
                                +-|.+..   ..++.+..   ......+.++|||+++++++ .+.++.|+|+++-.
T Consensus       246 Gk~~eingV~VVD~~~~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~  308 (459)
T d1fwxa2         246 GDYQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  308 (459)
T ss_dssp             TCSEEETTEEEEECSGG--CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             CCcEEeCCceeecccccCCcceeEEEec---CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhh
Confidence                      3333221   12222322   12345789999999987665 57899999997543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.60  E-value=0.0077  Score=56.26  Aligned_cols=234  Identities=9%  Similarity=-0.062  Sum_probs=127.2

Q ss_pred             EEEEEe-CCcEEEEecCCCcceEEeecCCCCE--EEEE-EeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeec
Q 015198           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--RIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR  133 (411)
Q Consensus        58 ~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~  133 (411)
                      .++.++ ++.+.-.|.++++......+.....  .+.. .... ++.+++..+.......+.|+-+|+.+|+.+..+...
T Consensus       117 ~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  195 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CCeEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence            455556 8877777888877666554311100  0000 0111 233444332211112389999999999999887621


Q ss_pred             C--------------------------------------ce-eEEEEcCCeEEEE---E----------------cCeEE
Q 015198          134 S--------------------------------------DV-RSVKLSRDRIVVV---L----------------EHKIY  155 (411)
Q Consensus       134 ~--------------------------------------~i-~~~~~~~~~~~~~---~----------------dg~i~  155 (411)
                      .                                      .+ ....++++..++.   .                ...+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svv  275 (571)
T d2ad6a1         196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccccee
Confidence            1                                      01 1234444433332   1                35688


Q ss_pred             EEEcCCceeeEEEeccCCCcc---------eEEEccCCCceEEEEecCCCCeEEEEE-cCCcceEEEecc----------
Q 015198          156 VYSFVDLKLLHQIETLANLRG---------LCCLSHHSSTSVLACPGLQRGQVRIEH-FGLNMIKLINAH----------  215 (411)
Q Consensus       156 iwd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~~~----------  215 (411)
                      ..|+++|+.+..++...+.+.         ...+..++....+++.+..+|.+++.+ .+++.+...+..          
T Consensus       276 Ald~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~  355 (571)
T d2ad6a1         276 GRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVD  355 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred             eeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccccc
Confidence            889999999888875433222         222333333333444456788888744 334333211100          


Q ss_pred             ---------------------------ccc--eeEEEecCCCCEEEEEcCC-----------------------------
Q 015198          216 ---------------------------DSH--IACFTLTLDGLLLATASTR-----------------------------  237 (411)
Q Consensus       216 ---------------------------~~~--i~~l~~sp~g~~l~s~s~d-----------------------------  237 (411)
                                                 .+.  -...+++|+..+++....+                             
T Consensus       356 ~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (571)
T d2ad6a1         356 LKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGP  435 (571)
T ss_dssp             TTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred             ccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecccc
Confidence                                       000  0124667776665543322                             


Q ss_pred             --------CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          238 --------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       238 --------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                              |. |.-+|+.+|+.+.+.....   +..+=.++-.+.++++++.||.++-+|.++|++.
T Consensus       436 ~~~~~~~~G~-l~AiD~~TG~~~W~~~~~~---~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         436 NGPTKKEMGQ-IRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             TSTTSCCCEE-EEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCcccCCccc-EEEeccCCCceeeEcCCCC---CCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence                    35 7788888888887665321   1111111224567888999999999999999864

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.59  E-value=0.0034  Score=55.20  Aligned_cols=223  Identities=9%  Similarity=0.021  Sum_probs=134.7

Q ss_pred             EEEEcC---CCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEE--EEeccCCeEEEEecCCCCC-----------
Q 015198           49 SVSWNQ---DYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIV--EMLFRCNILALVGAGDNSQ-----------  110 (411)
Q Consensus        49 ~l~~s~---~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~s~~~d~~-----------  110 (411)
                      .+++..   ||++|.+..  ++.|.+.|+++.+......+ .......  .....++..+++..+++..           
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            566654   899999888  89999999998775444444 2222223  3333455545544333210           


Q ss_pred             --CCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE--E-c---------------CeEEEEEc-----------
Q 015198          111 --YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L-E---------------HKIYVYSF-----------  159 (411)
Q Consensus       111 --~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-d---------------g~i~iwd~-----------  159 (411)
                        -..+.+.++|..+.+....+........+.++++|++++  . +               ..+.+++.           
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence              011457789999999998888878888999999998887  1 1               12344443           


Q ss_pred             ------------CCc---eeeEEEeccCCCcceEEEccCCCceEEEEecCCCCeEEEEEcCC------------cce-EE
Q 015198          160 ------------VDL---KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL------------NMI-KL  211 (411)
Q Consensus       160 ------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~------------~~~-~~  211 (411)
                                  ++.   ..+..+.....+   -.+..+|++++++++|..+.++.+.+...            ..+ ..
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsP---HGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e  324 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIANNP---HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  324 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEESSC---CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred             cEEeCCceeecccccCCcceeEEEecCCCC---CceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence                        210   122222222222   12455677889999999999999977642            011 11


Q ss_pred             EeccccceeEEEecCCCCEEEEEcCCCeEEEEEECCCC----------ceEEEEeCCCCCcceEEE------EeCCCCCE
Q 015198          212 INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----------TRLQEVRRGVDRAEIYSI------ALSPNVQW  275 (411)
Q Consensus       212 ~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----------~~~~~~~~~~~~~~v~~l------~~spdg~~  275 (411)
                      .. ..-.-...+|+..|.-..+---|.. |.-|++...          ..+..+..+..   +-.+      ...|||++
T Consensus       325 ~e-lglgPLht~fd~~g~aytslfids~-v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~---~gh~~~~~g~t~~~dgk~  399 (459)
T d1fwxa2         325 PE-LGLGPLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ---PGHLKTVMGETLDATNDW  399 (459)
T ss_dssp             CB-CCSCEEEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSC---EEEEEETTTTSTTCCSSE
T ss_pred             cc-cCcCccccccCCCceEEEEeeccce-EEEEecchhhhhhccccCCcceeccccccC---CCCCccCcCCcCCCCCCE
Confidence            11 1222345678888876666678898 999998432          44555554221   2222      23589999


Q ss_pred             EEEEe
Q 015198          276 LAVAS  280 (411)
Q Consensus       276 l~s~s  280 (411)
                      |++..
T Consensus       400 l~~~n  404 (459)
T d1fwxa2         400 LVCLS  404 (459)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            98875

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.58  E-value=0.021  Score=53.45  Aligned_cols=55  Identities=11%  Similarity=0.113  Sum_probs=38.7

Q ss_pred             CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      |. |.-||+.+|+.+......   .++.+=.++-.|.+++.|+.||.++-+|.++|+..
T Consensus       453 G~-l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         453 GQ-IKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             EE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ce-EEEEeCCCCceecccCCC---CCCccceeEecCCEEEEECCCCeEEEEECCCCcEe
Confidence            45 888898899887665432   12222122335678888999999999999999864

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.34  E-value=0.021  Score=53.23  Aligned_cols=57  Identities=9%  Similarity=0.119  Sum_probs=38.3

Q ss_pred             CeEEEEECCCCcEEEEEeec-----CceeE-EEEcCCeEEEE-------EcCeEEEEEcCCceeeEEEec
Q 015198          114 TKVIIWDDHQSRCIGEFAFR-----SDVRS-VKLSRDRIVVV-------LEHKIYVYSFVDLKLLHQIET  170 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~-----~~i~~-~~~~~~~~~~~-------~dg~i~iwd~~~~~~~~~~~~  170 (411)
                      +.|.-.|.++|+.+......     ..++. -.+..+..++.       ..|.|+-+|+++|+.+..+..
T Consensus       125 g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            89999999999998877521     11221 12223333333       267899999999999988754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=0.035  Score=45.90  Aligned_cols=229  Identities=8%  Similarity=-0.041  Sum_probs=126.8

Q ss_pred             CCEEEEEeCCcEEEEecCCCcce---EEeecCCCCEEEEEEeccC-CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEe
Q 015198           56 YGCFAAGTSCGFRIYNCEPFKET---FRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA  131 (411)
Q Consensus        56 g~~la~g~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~  131 (411)
                      |.+|+.+..+.|+-.+++.....   ....+..+...+..+.|+. +..++.+....     +.|+..++..+.....+.
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~-----~~I~~~~l~g~~~~~v~~   75 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTIIR   75 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEEC
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCC-----CeEEEEEcccCCcEEEEE
Confidence            45677767677777777542211   0111112333455666654 33344444443     889988876655444443


Q ss_pred             -ecCceeEEEEcC--CeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEecC--CCCeEEEEEc
Q 015198          132 -FRSDVRSVKLSR--DRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL--QRGQVRIEHF  204 (411)
Q Consensus       132 -~~~~i~~~~~~~--~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~dg~i~i~~~  204 (411)
                       ....+.+++++.  +..+++  ..+.|.+.++........+.....  ....+..+|...++..+-.  ....|.--..
T Consensus        76 ~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~--~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~  153 (263)
T d1npea_          76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV--NPRGIVTDPVRGNLYWTDWNRDNPKIETSHM  153 (263)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS--SEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred             eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccccc--CCcEEEEecccCcEEEeecCCCCcEEEEecC
Confidence             235677888874  333444  467899999865443322322222  3344555554445544422  2223433345


Q ss_pred             CCcceEEEe-ccccceeEEEecCCCCEEEEE-cCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCC
Q 015198          205 GLNMIKLIN-AHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK  282 (411)
Q Consensus       205 ~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d  282 (411)
                      ++.....+. ..-.....+++++.++.|..+ ...+. |...|+........+.+.   ....+|++. ++.+..+-...
T Consensus       154 dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~-I~~~~~~g~~~~~v~~~~---~~P~~lav~-~~~lYwtd~~~  228 (263)
T d1npea_         154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKT  228 (263)
T ss_dssp             TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTT
T ss_pred             CCCCceeeeeecccccceEEEeecCcEEEEEeCCCCE-EEEEECCCCCeEEEECCC---CCcEEEEEE-CCEEEEEECCC
Confidence            554444443 233456789999888777655 45667 999998654443334432   234577775 33334444466


Q ss_pred             CcEEEEEccccccC
Q 015198          283 GTVHIFSLRVRVVG  296 (411)
Q Consensus       283 g~I~vwd~~~~~~~  296 (411)
                      +.|...|..+++..
T Consensus       229 ~~I~~~~~~~g~~~  242 (263)
T d1npea_         229 NSVIAMDLAISKEM  242 (263)
T ss_dssp             TEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCccc
Confidence            78988898887654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.22  E-value=0.056  Score=47.06  Aligned_cols=83  Identities=6%  Similarity=-0.041  Sum_probs=48.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCC-CCCCCCeEEEE
Q 015198           43 DEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-SQYPPTKVIIW  119 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~~~d~~i~vw  119 (411)
                      |.......++.++|++++.|.  ...+.+||..+........+.... .........++.+++.++.. .......+.+|
T Consensus        74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~y  152 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY  152 (387)
T ss_dssp             CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred             cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccc-cccceeeecCCceeeeccccccccccceeeee
Confidence            333445678889999999987  568999998864433222221111 11233344565555555432 11223578999


Q ss_pred             ECCCCcE
Q 015198          120 DDHQSRC  126 (411)
Q Consensus       120 d~~~~~~  126 (411)
                      |..+++-
T Consensus       153 d~~~~~W  159 (387)
T d1k3ia3         153 SPSSKTW  159 (387)
T ss_dssp             ETTTTEE
T ss_pred             cCCCCce
Confidence            9887754

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.12  E-value=0.1  Score=48.41  Aligned_cols=55  Identities=15%  Similarity=0.238  Sum_probs=40.6

Q ss_pred             CeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCcEEEEEccccccC
Q 015198          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (411)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~  296 (411)
                      |. |.-+|+.+|+.+.+...+   .++..-.++..|.++++|+.||.++-+|.++|++.
T Consensus       466 G~-l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GS-LRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EE-EEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             Ce-EEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence            56 888899999988877642   22222123346778888999999999999999964

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.10  E-value=0.087  Score=48.71  Aligned_cols=106  Identities=13%  Similarity=0.066  Sum_probs=60.2

Q ss_pred             EEEEEe-CCcEEEEecCCCcceEEeecCCCCE---------EEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEE
Q 015198           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF---------RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI  127 (411)
Q Consensus        58 ~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~  127 (411)
                      .|.+++ ++.|.-.|.++++.+.+........         .........+. +++. ..+     +.|.-.|..+|+.+
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~-~~~-----g~l~Alda~tG~~~  140 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDK-VYVG-TLD-----GRLIALDAKTGKAI  140 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTE-EEEE-CTT-----SEEEEEETTTCCEE
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCe-EEEE-eCC-----CEEEEEECCCCcEE
Confidence            444555 7877777888877776643210000         00011111222 3333 333     89999999999999


Q ss_pred             EEEeecCc-----eeEEEEcCCeEEEE--------EcCeEEEEEcCCceeeEEEec
Q 015198          128 GEFAFRSD-----VRSVKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIET  170 (411)
Q Consensus       128 ~~~~~~~~-----i~~~~~~~~~~~~~--------~dg~i~iwd~~~~~~~~~~~~  170 (411)
                      ........     +...-.--++.+++        ..|.|+-+|.++|+.+..+..
T Consensus       141 w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             eccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            88863211     11111111344444        247899999999999988864

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.88  E-value=0.16  Score=47.02  Aligned_cols=106  Identities=8%  Similarity=-0.022  Sum_probs=60.4

Q ss_pred             EEEEEe-CCcEEEEecCCCcceEEeecCCCC---------EEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCcEE
Q 015198           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGG---------FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI  127 (411)
Q Consensus        58 ~la~g~-dg~i~iw~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~  127 (411)
                      .|.+++ ++.|.-+|.++++.+.+...+...         .....+....+. +++.. .+     +.+.-.|.++|+.+
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-v~~~t-~~-----g~l~alda~tG~~~  151 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGK-VYVGA-WD-----GRLIALDAATGKEV  151 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTE-EEEEC-TT-----SEEEEEETTTCCEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCc-EEEEe-cc-----cceeeeccccccce
Confidence            444555 888888888887777665321100         000111222333 33332 23     88988999999998


Q ss_pred             EEEee-cC---ce--eEEEEcCCeEEEE--------EcCeEEEEEcCCceeeEEEec
Q 015198          128 GEFAF-RS---DV--RSVKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIET  170 (411)
Q Consensus       128 ~~~~~-~~---~i--~~~~~~~~~~~~~--------~dg~i~iwd~~~~~~~~~~~~  170 (411)
                      ..... ..   .+  ...-.-.++.+++        ..|.|+.+|.++|+.+..+..
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  208 (573)
T d1kb0a2         152 WHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (573)
T ss_dssp             EEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             ecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence            77652 11   11  1111112444444        257899999999999988754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.15  Score=42.03  Aligned_cols=205  Identities=7%  Similarity=-0.048  Sum_probs=114.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe--CCcEEEEecCCCcc--eEEeec--CCCCEEEEEEeccCCeEEEEecCCCCCCCCCeE
Q 015198           43 DEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE--TFRRDL--KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (411)
Q Consensus        43 h~~~V~~l~~s~~g~~la~g~--dg~i~iw~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i  116 (411)
                      ....+.+++|++..+.|.-..  .+.|.-.+++....  .....+  ......-+++.|.....+.+-...      +.|
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~------~~I  101 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL------GTV  101 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTT------TEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCC------CEE
Confidence            344678999999888877666  66666555543111  111111  112233455666666666655443      899


Q ss_pred             EEEECCCCcEEEEEe-ecCceeEEEEcCCe-EEEE----EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEE
Q 015198          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDR-IVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                      .+.++........+. .......++++|.. .+..    ..+.|.-.++..............  ....++.++.+..|.
T Consensus       102 ~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~--~p~gl~iD~~~~~lY  179 (266)
T d1ijqa1         102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ--WPNGITLDLLSGRLY  179 (266)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS--CEEEEEEETTTTEEE
T ss_pred             EeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccc--eeeEEEeeccccEEE
Confidence            999987666544444 44667889998854 4443    234677777654333332322212  334555555445555


Q ss_pred             EecCCCCeEEEEEcCCcceEEE-ecc--ccceeEEEecCCCCEEEEEcCCCeEEEEEECCCCceEEEEeC
Q 015198          191 CPGLQRGQVRIEHFGLNMIKLI-NAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (411)
Q Consensus       191 ~~g~~dg~i~i~~~~~~~~~~~-~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (411)
                      .+-...+.|..-+.++.....+ ...  ......+++. ++.++.+-..++. |...+..+++....+..
T Consensus       180 w~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~-I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE-EEEEETTTCCCCEEEEC
T ss_pred             EecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCe-EEEEECCCCcceEEEEc
Confidence            5555677888766666544333 222  1234566665 3334444445667 88888878776655554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.56  E-value=0.083  Score=45.89  Aligned_cols=114  Identities=12%  Similarity=-0.014  Sum_probs=67.9

Q ss_pred             eEEEEEcCCCCEEEEEe-CC-----------cEEEEecCCCcceEEeec-CCCCEEEEEEeccCCeEEEEecCCCCCCCC
Q 015198           47 LISVSWNQDYGCFAAGT-SC-----------GFRIYNCEPFKETFRRDL-KSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (411)
Q Consensus        47 V~~l~~s~~g~~la~g~-dg-----------~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d  113 (411)
                      +.......+|+.++.|+ +.           .+.+||..+......... ..+........+.+++.+++.++.+    .
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~----~   97 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND----A   97 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS----T
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC----C
Confidence            34455567888888877 21           267899987543221111 1222223344566788777777654    2


Q ss_pred             CeEEEEECCCCcEEEEEe--ecCceeEEEEcCCeEEEEE---------cCeEEEEEcCCcee
Q 015198          114 TKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVVL---------EHKIYVYSFVDLKL  164 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~---------dg~i~iwd~~~~~~  164 (411)
                      ..+.+||..+......-.  ....-...+..+|+++++.         -..+.+||..+.+-
T Consensus        98 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            689999988776543222  2233345677778777771         14689999877643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.22  Score=40.89  Aligned_cols=227  Identities=8%  Similarity=-0.103  Sum_probs=125.0

Q ss_pred             EEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCC-eEEEEecCCCCCCCCCeEEEEECCCCcE---EEE-Ee-
Q 015198           58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRC---IGE-FA-  131 (411)
Q Consensus        58 ~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~d~~i~vwd~~~~~~---~~~-~~-  131 (411)
                      +|+.+....|+-.++++.......   .+...+..+.|+.. ..++.+-...     +.|.-.++.....   ... +. 
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~---~~~~~~~~id~d~~~~~lYw~D~~~-----~~I~~~~l~~~~~~~~~~~~~~~   74 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR   74 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEECS
T ss_pred             EEEEECCCeEEEEECCCCcceeee---CCCCceEEEEEEeCCCEEEEEECCC-----CEEEEEEecCCCCCcceEEEEeC
Confidence            566666566888888764432221   23334566666642 3333443333     7777666543221   111 22 


Q ss_pred             ecCceeEEEEcC--CeEEEE--EcCeEEEEEcCCceeeEEEeccCCCcceEEEccCCCceEEEEe-cCCCCeEEEEEcCC
Q 015198          132 FRSDVRSVKLSR--DRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP-GLQRGQVRIEHFGL  206 (411)
Q Consensus       132 ~~~~i~~~~~~~--~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~dg~i~i~~~~~  206 (411)
                      ....+..+++.+  ...+++  ..+.|.+.++........+.....  ....+..++...+|..+ .+..+.|.--..++
T Consensus        75 ~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~--~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG  152 (266)
T d1ijqa1          75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (266)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCC--CcceEEEEcccCeEEEeccCCCcceeEeccCC
Confidence            234566777764  444444  467899999876554444443333  23444444433344433 23345566566666


Q ss_pred             cceEEEec-cccceeEEEecCCCCEEEEE-cCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCCEEEEEeCCCc
Q 015198          207 NMIKLINA-HDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT  284 (411)
Q Consensus       207 ~~~~~~~~-~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  284 (411)
                      .....+.. .-.....+++++.++.|..+ ...+. |...|+........+..........+|++. ++.+..+-..++.
T Consensus       153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~-I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~  230 (266)
T d1ijqa1         153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  230 (266)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             CceecccccccceeeEEEeeccccEEEEecCCcCE-EEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCe
Confidence            65555543 33566889999887766665 45567 999998655443333332222346677776 3344444456777


Q ss_pred             EEEEEccccccC
Q 015198          285 VHIFSLRVRVVG  296 (411)
Q Consensus       285 I~vwd~~~~~~~  296 (411)
                      |+..+..+++..
T Consensus       231 I~~~~~~~g~~~  242 (266)
T d1ijqa1         231 IFSANRLTGSDV  242 (266)
T ss_dssp             EEEEETTTCCCC
T ss_pred             EEEEECCCCcce
Confidence            888887776644

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.26  E-value=0.19  Score=42.97  Aligned_cols=79  Identities=11%  Similarity=0.116  Sum_probs=45.9

Q ss_pred             EEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEc-CCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCC-CCCEE
Q 015198          199 VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-NVQWL  276 (411)
Q Consensus       199 i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l  276 (411)
                      ..++..+.+........-...+.|+++||+++|+.+. ..+. |++|++.....+.......-...+-.+.+.+ +|.+.
T Consensus       188 g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~-i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lw  266 (340)
T d1v04a_         188 SFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLW  266 (340)
T ss_dssp             EEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEE
T ss_pred             eeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCe-EEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEE
Confidence            3444344444444444445678899999998776654 4556 9999986543322211111344567788876 44544


Q ss_pred             EE
Q 015198          277 AV  278 (411)
Q Consensus       277 ~s  278 (411)
                      +.
T Consensus       267 va  268 (340)
T d1v04a_         267 VG  268 (340)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.17  E-value=0.38  Score=42.44  Aligned_cols=101  Identities=8%  Similarity=0.011  Sum_probs=58.6

Q ss_pred             CCCEEEEEEeccCCeEEEE-----ecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEcCCeEEEE---Ec-----
Q 015198           85 SGGFRIVEMLFRCNILALV-----GAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE-----  151 (411)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~-----s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d-----  151 (411)
                      ++...+..+..+|++..++     +|++.     ..|+++|+.+++.+...-.......+.|.+|+..+.   .+     
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~-----~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~  196 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDW-----VTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGK  196 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSC-----EEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred             cccceecceEecCCCCEEEEEeccccCch-----heeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCc
Confidence            3444455567788875554     22333     789999999998775332223346788999987765   11     


Q ss_pred             -----------CeEEEEEcCCcee--eEEEeccCCCcceEEEccCCCceEEE
Q 015198          152 -----------HKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHSSTSVLA  190 (411)
Q Consensus       152 -----------g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (411)
                                 ..|+.+.+.+...  ...+.........+.+..+.++.+++
T Consensus       197 ~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~  248 (430)
T d1qfma1         197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVL  248 (430)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred             ccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceee
Confidence                       2578888766432  23333333333444444455555543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.02  E-value=0.38  Score=41.09  Aligned_cols=197  Identities=11%  Similarity=0.108  Sum_probs=110.1

Q ss_pred             EEEEEEeccC---CeEEEEecCCCCCCCCCeEEEEECCCCcEEEEEeecCceeEEEEc------CCeEEEE--E---c--
Q 015198           88 FRIVEMLFRC---NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS------RDRIVVV--L---E--  151 (411)
Q Consensus        88 ~~~~~~~~~~---~~~~l~s~~~d~~~~d~~i~vwd~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~--~---d--  151 (411)
                      ..-.++..++   +..++++....     +-|.+||+ .|+.+..+. .+.++.+..-      .....++  .   +  
T Consensus        26 ADDPAIW~n~~~p~~SlI~gTdK~-----~Gl~vYdL-~G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~   98 (353)
T d1h6la_          26 ADDPAIWLDPKNPQNSKLITTNKK-----SGLAVYSL-EGKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGK   98 (353)
T ss_dssp             EEEEEEECCSSCGGGCEEEEEETT-----SCCEEEET-TCCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTT
T ss_pred             cCCceEEcCCCCcCccEEEEEcCc-----CCEEEEcC-CCcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcc
Confidence            3334444443   34444444443     66999997 588776654 3444544432      3333232  2   1  


Q ss_pred             CeEEEEEcC-CceeeEEEecc-------CCCcceEEEccCC-CceEEEEecCCCCeEEEEEcC----C----cceEEEec
Q 015198          152 HKIYVYSFV-DLKLLHQIETL-------ANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFG----L----NMIKLINA  214 (411)
Q Consensus       152 g~i~iwd~~-~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~l~~~g~~dg~i~i~~~~----~----~~~~~~~~  214 (411)
                      ..|.+|.+. ....+..+...       ...+..+|+-.++ .+.+.++....+|.+..|...    +    ..++.+. 
T Consensus        99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-  177 (353)
T d1h6la_          99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-  177 (353)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-
T ss_pred             eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-
Confidence            367778774 22233333221       1123455664443 344444556688888775432    1    2233333 


Q ss_pred             cccceeEEEecCCCCEEEEEcCCCeEEEEEECCC-----CceEEEEeCCCCCcceEEEEeCC--C--CCEEEEEeCCCcE
Q 015198          215 HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD-----GTRLQEVRRGVDRAEIYSIALSP--N--VQWLAVASDKGTV  285 (411)
Q Consensus       215 ~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~-----~~~~~~~~~~~~~~~v~~l~~sp--d--g~~l~s~s~dg~I  285 (411)
                      -...+..+.+......|+.+-++.. |+.++...     +..+....+....+.+-.|++-.  +  |-+|++.-.+++.
T Consensus       178 ~~~q~EGCVvDde~~~LyisEE~~G-iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f  256 (353)
T d1h6la_         178 MNSQTEGMAADDEYGSLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSY  256 (353)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTTE-EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred             CCCccceEEEeCCCCcEEEecCccc-eEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeE
Confidence            3456788999999889999988887 87776542     12222222322455777777543  3  3455555567889


Q ss_pred             EEEEcccc
Q 015198          286 HIFSLRVR  293 (411)
Q Consensus       286 ~vwd~~~~  293 (411)
                      .|||....
T Consensus       257 ~vydr~~~  264 (353)
T d1h6la_         257 AIYERQGQ  264 (353)
T ss_dssp             EEEESSTT
T ss_pred             EEEecCCC
Confidence            99999875

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.53  E-value=0.34  Score=41.87  Aligned_cols=175  Identities=8%  Similarity=0.049  Sum_probs=98.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCC-----------cceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCC
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPF-----------KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~  114 (411)
                      ...-+++++...+|++|+...+.|..++..           .......+    ..+..++|+.+...+..+        +
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d~l~v~~~--------~  105 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGDQVLVSTR--------N  105 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETTEEEEEES--------S
T ss_pred             ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCCEEEEEeC--------C
Confidence            356788888888898888556778775321           11111211    146777888777555442        6


Q ss_pred             eEEEEECCCCcEEEEEe-ecCceeEEEEcCCeEEEE-EcCeEEEEEcCCceeeEEEecc---CCCcceEEEccCCCceEE
Q 015198          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETL---ANLRGLCCLSHHSSTSVL  189 (411)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l  189 (411)
                      .+..++...-....... ...++..+.++|....++ .++.+.++++.+++......+.   .-.....+..+.+.+..+
T Consensus       106 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         106 ALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             EEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred             CEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence            78888866644444433 567889999999887777 7899999999887543322110   000123444445555555


Q ss_pred             EEecCCCCeEEE--EEcCCcceEEEeccccceeEEEecCCCCEEEEE
Q 015198          190 ACPGLQRGQVRI--EHFGLNMIKLINAHDSHIACFTLTLDGLLLATA  234 (411)
Q Consensus       190 ~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~  234 (411)
                      +. + ..+...+  .......+.........+.+|.|-.+..++++-
T Consensus       186 v~-~-~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         186 FA-W-RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EE-E-ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EE-e-CCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            43 2 1112222  111111110001123467788888777666544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.60  E-value=1.7  Score=39.98  Aligned_cols=56  Identities=7%  Similarity=0.052  Sum_probs=38.9

Q ss_pred             CeEEEEECCCCcEEEEEeec-----CceeE-EEEcCCeEEEE--------EcCeEEEEEcCCceeeEEEec
Q 015198          114 TKVIIWDDHQSRCIGEFAFR-----SDVRS-VKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIET  170 (411)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~-----~~i~~-~~~~~~~~~~~--------~dg~i~iwd~~~~~~~~~~~~  170 (411)
                      +.|.-.|.++|+.+..+...     ..++. -.+. ++.+++        ..|.|+-+|+++|+++.++..
T Consensus       131 g~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         131 GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCeEeeccccCceeccccccccccccccccCCcEE-CCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            99999999999999888621     11211 1122 344444        248999999999999988753

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.90  E-value=0.94  Score=41.65  Aligned_cols=52  Identities=21%  Similarity=0.331  Sum_probs=36.7

Q ss_pred             cCCCCEEEEEcCCCeEEEEEECCCCceEEEEeCCCCCcceEEEEeCCCCC-EEEE
Q 015198          225 TLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAV  278 (411)
Q Consensus       225 sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s  278 (411)
                      +..|.++++|+.||. ++.+|.++|+.+.+++.... ..-.-+.|..+|+ |+++
T Consensus       494 stagglVF~Gt~dg~-l~A~Da~TGe~LW~~~~~~~-~~~~P~ty~~~G~qYv~i  546 (582)
T d1flga_         494 ATAGNLVFTGTGDGY-FKAFDAKSGKELWKFQTGSG-IVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             EETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEEEEEE
T ss_pred             EEcCCeEEEeCCCCe-EEEEECCCCcEeEEEECCCC-ccccCEEEEECCEEEEEE
Confidence            346678888999999 99999999999988875321 1111256667885 4544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.30  E-value=1.5  Score=37.20  Aligned_cols=158  Identities=19%  Similarity=0.256  Sum_probs=90.4

Q ss_pred             CCCceEEEEecCCCCeEEEEEcCCcceEEEeccccceeEEEec------CCCCEEEEEcCC----CeEEEEEECC-CCce
Q 015198          183 HSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLT------LDGLLLATASTR----GTLIRIFNTV-DGTR  251 (411)
Q Consensus       183 ~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~s------p~g~~l~s~s~d----g~~I~vwd~~-~~~~  251 (411)
                      +|...+++.+ ...+-|++++.+++.+..+.  .+.++.|..-      ....-|+.++..    .. |.+|.+. ....
T Consensus        37 ~p~~SlI~gT-dK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~-l~~~~id~~~~~  112 (353)
T d1h6la_          37 NPQNSKLITT-NKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNT-IEIYAIDGKNGT  112 (353)
T ss_dssp             CGGGCEEEEE-ETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCE-EEEEEEETTTTE
T ss_pred             CcCccEEEEE-cCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCccee-EEEEEecCcccc
Confidence            3444555554 35556999999998887764  3455555433      222234555432    35 8888774 2333


Q ss_pred             EEEEeCCCC-----CcceEEEEe--CCC-CC-EEEEEeCCCcEEEEEccccccCCCCCCCCCCCCcccccccCCCCCccc
Q 015198          252 LQEVRRGVD-----RAEIYSIAL--SPN-VQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTL  322 (411)
Q Consensus       252 ~~~~~~~~~-----~~~v~~l~~--spd-g~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (411)
                      +..+.....     ...+..+|+  ++. |. ++++...+|.+..|.+...+...                         
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~-------------------------  167 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY-------------------------  167 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS-------------------------
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc-------------------------
Confidence            444432111     124667777  554 54 45667778999999886544321                         


Q ss_pred             cCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEEccCCEEEEEEeCCcEEEEEEecCCCC
Q 015198          323 ISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGG  393 (411)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~  393 (411)
                                  .            .-....+|+++.....++.-..++.|+++=++..++.|.++++.+.
T Consensus       168 ------------v------------~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~  214 (353)
T d1h6la_         168 ------------I------------SGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGS  214 (353)
T ss_dssp             ------------E------------EEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCS
T ss_pred             ------------e------------eeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCc
Confidence                        0            0012346777765554444444488888877777777777765443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.51  E-value=3.6  Score=35.73  Aligned_cols=113  Identities=6%  Similarity=-0.059  Sum_probs=64.8

Q ss_pred             EEEccCCCceEEEEec----CCCCeEEEEEcCCcceEEEeccccceeEEEecCCCCEEEEEcCC----------------
Q 015198          178 CCLSHHSSTSVLACPG----LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR----------------  237 (411)
Q Consensus       178 ~~~~~~~~~~~l~~~g----~~dg~i~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d----------------  237 (411)
                      ..++++|++++++++-    +....|++.+...+..............++|.+|++.|+....+                
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~  207 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCc
Confidence            4456677777877643    33346777666554433222222233568899999977654322                


Q ss_pred             CeEEEEEECCCCce--EEEEeCCCCCcceEEEEeCCCCCEEEEEeC---CCcEEEEEcc
Q 015198          238 GTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASD---KGTVHIFSLR  291 (411)
Q Consensus       238 g~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~I~vwd~~  291 (411)
                      .. |..+.+.+...  ...+........+..+..+.++++|+....   +....+|-+.
T Consensus       208 ~~-v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d  265 (430)
T d1qfma1         208 QK-LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD  265 (430)
T ss_dssp             CE-EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred             ce-EEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEee
Confidence            24 78888776532  233443223345677888999998764332   3344455443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.10  E-value=8  Score=32.86  Aligned_cols=93  Identities=13%  Similarity=0.040  Sum_probs=60.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCcEEEEecCCCcceEEeecCCCCEEEEEEeccCCeEEEEecCCCCCCCCCeEEEEECCCCc
Q 015198           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (411)
Q Consensus        46 ~V~~l~~s~~g~~la~g~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~d~~i~vwd~~~~~  125 (411)
                      .|..++|+.|  .|++..++.+..++...........  .-...+..+.+.++...++...       +.+.++++..++
T Consensus        88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~p~~~~l~~~~-------~~~~~~~l~~~~  156 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVT--SFEKPVFQLKNVNNTLVILNSV-------NDLSALDLRTKS  156 (381)
T ss_dssp             TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEE--ECSSCEEEEEECSSEEEEEETT-------SEEEEEETTTCC
T ss_pred             CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccc--cccccccceecCCceeEEEecC-------CCEEEEEeccCc
Confidence            5899999755  6777777888888887654433332  2344577788888877766643       889999988886


Q ss_pred             EEEEE------eecCceeEEEEcCCeEEEE
Q 015198          126 CIGEF------AFRSDVRSVKLSRDRIVVV  149 (411)
Q Consensus       126 ~~~~~------~~~~~i~~~~~~~~~~~~~  149 (411)
                      .....      .-...+.+++|++.++.++
T Consensus       157 ~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         157 TKQLAQNVTSFDVTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             EEEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred             cccccCCcceEEecCCceEEEEeCCcEEEE
Confidence            43322      1235556666666655544