Citrus Sinensis ID: 015215

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
MREKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEG
ccccHHHHHHHHHHHHHHcccEEEEEEcEEEEEcccccccEEEccccccccccccccEEEEEEcccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccEEEEEEEEcHHHHHHHHHHHccccEEEEEEEccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHcccccccccccccHHHHHHHHHHccccccccEEEccEEEEccEEEcccccHHHHHHHHHcccccccccccccccc
cccHHHHHHHHHHHHHHHHHcEEEEEcccEEEEcHHHHHccHHHHHHcccccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHcccEEEEEEcccccccEEccccccccccccccccEEEcEEEEEccHHHHHHHHHHcccEEEEEEEcccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccEEEccEEEEEEccccccccHHHHHHccccccEcccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHccccHHHHHHHHHHccccHHHHHHHccccccccccHHHHHHHHHHHcccccccEEEEEEEEEEccEEcccccHHHHHHHHHHcccccccccHHcccc
MREKLGFLVGILFLLCGLSfgrfvveknslkvtspekikGVYECaignfgvpqyggtligtvvypkanqkackgfdevdlsfksrpgglptfllvdrgdcyfTLKAWNAQKGGAAAILvaddkteplitmdtpeeenadaeylqnitipsALISKSLGDSIKkslsggemvnmnldwtealphpderveyefwtnsndecgpkceSQIDFVKNFKGAAQILEQrgytqftphyitwycpeafilSKQCKsqcinhgrycapdpeqdfsrgydgkdVVVQNLRQACFFKVanesrkpwlwwDYVTDFaircpmkekkyTKECAEQVIKSLGVDlkkvdecvgdpeadvdnqvlkteqdaqigkgsrgdvtilptlvinnrqyrgkldkGAVLKAICAGfqettepaiclseg
MREKLGFLVGILFLLCGLSFGRFVVEKnslkvtspekIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFkvanesrkpwlwwDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGdpeadvdnqvlkteqdaqigkgsrgdvtilptlVINNRQYRGKLDKGAVLKAICAgfqettepaiclseg
MREKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEG
****LGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKT**L**************YLQNITIPSALIS***************MVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGD**********************RGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAIC****
**EKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLS**
MREKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEG
**EKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICL***
iiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MREKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSEG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query411 2.2.26 [Sep-21-2011]
P93026 623 Vacuolar-sorting receptor yes no 0.990 0.653 0.798 0.0
O22925 625 Vacuolar-sorting receptor no no 0.997 0.656 0.728 0.0
O80977 628 Vacuolar-sorting receptor no no 0.946 0.619 0.755 0.0
P93484 623 Vacuolar-sorting receptor N/A no 0.980 0.646 0.733 0.0
Q56ZQ3 628 Vacuolar-sorting receptor no no 0.946 0.619 0.748 0.0
Q8L7E3 625 Vacuolar-sorting receptor no no 0.987 0.649 0.607 1e-152
Q9FYH7 631 Vacuolar-sorting receptor no no 0.970 0.632 0.588 1e-148
O64758 618 Vacuolar-sorting receptor no no 0.970 0.645 0.555 1e-137
Q4V3B8 540 Signal peptide peptidase- no no 0.177 0.135 0.405 2e-05
Q8W469 540 Signal peptide peptidase- no no 0.187 0.142 0.325 4e-05
>sp|P93026|VSR1_ARATH Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2 Back     alignment and function desciption
 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/407 (79%), Positives = 375/407 (92%)

Query: 4   KLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVV 63
           KLG       L+  L+ GRFVVEKN+LKVTSP+ IKG+YECAIGNFGVPQYGGTL+GTVV
Sbjct: 2   KLGLFTLSFLLILNLAMGRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVV 61

Query: 64  YPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDK 123
           YPK+NQKACK + + D+SFKS+PG LPTF+L+DRGDCYFTLKAW AQ+ GAAAILVAD K
Sbjct: 62  YPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSK 121

Query: 124 TEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPH 183
            EPLITMDTPEE+ +DA+YLQNITIPSALI+K+LGDSIK +LSGG+MVNM LDWTE++PH
Sbjct: 122 AEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPH 181

Query: 184 PDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFI 243
           PDERVEYE WTNSNDECG KC++QI+F+KNFKGAAQILE+ G+TQFTPHYITWYCPEAF 
Sbjct: 182 PDERVEYELWTNSNDECGKKCDTQIEFLKNFKGAAQILEKGGHTQFTPHYITWYCPEAFT 241

Query: 244 LSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYV 303
           LSKQCKSQCINHGRYCAPDPEQDF++GYDGKDVVVQNLRQAC ++V N++ KPW+WWDYV
Sbjct: 242 LSKQCKSQCINHGRYCAPDPEQDFTKGYDGKDVVVQNLRQACVYRVMNDTGKPWVWWDYV 301

Query: 304 TDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKG 363
           TDFAIRCPMKEKKYTKECA+ +IKSLG+DLKKVD+C+GDPEADV+N VLK EQ++QIGKG
Sbjct: 302 TDFAIRCPMKEKKYTKECADGIIKSLGIDLKKVDKCIGDPEADVENPVLKAEQESQIGKG 361

Query: 364 SRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSE 410
           SRGDVTILPTLV+NNRQYRGKL+KGAVLKA+C+GFQE+TEPAICL+E
Sbjct: 362 SRGDVTILPTLVVNNRQYRGKLEKGAVLKAMCSGFQESTEPAICLTE 408
Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles. Required for the sorting of 12S globulin, 2S albumin and maybe other seed storage proteins to protein storage vacuoles (PSVs) in seeds. May also be implicated in targeting N-terminal propeptide containing proteins to lytic vacuoles.
Arabidopsis thaliana (taxid: 3702)
>sp|O22925|VSR2_ARATH Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1 Back     alignment and function description
>sp|O80977|VSR3_ARATH Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1 Back     alignment and function description
>sp|P93484|VSR1_PEA Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1 Back     alignment and function description
>sp|Q56ZQ3|VSR4_ARATH Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2 Back     alignment and function description
>sp|Q8L7E3|VSR7_ARATH Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2 Back     alignment and function description
>sp|Q9FYH7|VSR6_ARATH Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=3 Back     alignment and function description
>sp|O64758|VSR5_ARATH Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1 Back     alignment and function description
>sp|Q4V3B8|SIPL3_ARATH Signal peptide peptidase-like 3 OS=Arabidopsis thaliana GN=SPPL3 PE=2 SV=1 Back     alignment and function description
>sp|Q8W469|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
224091118 625 predicted protein [Populus trichocarpa] 0.997 0.656 0.895 0.0
255575588 625 Vacuolar sorting receptor 1 precursor, p 0.997 0.656 0.895 0.0
359481218 624 PREDICTED: vacuolar-sorting receptor 1-l 0.997 0.657 0.868 0.0
83284015 621 vacuolar sorting receptor protein PV72-l 0.990 0.655 0.837 0.0
7484768 624 vacuolar sorting receptor protein homolo 0.997 0.657 0.817 0.0
449439799 624 PREDICTED: vacuolar-sorting receptor 1-l 0.982 0.647 0.809 0.0
147828306 625 hypothetical protein VITISV_015390 [Viti 0.990 0.651 0.812 0.0
218186303 626 hypothetical protein OsI_37233 [Oryza sa 0.958 0.629 0.820 0.0
242069735 627 hypothetical protein SORBIDRAFT_05g00116 0.985 0.645 0.800 0.0
218185119 626 hypothetical protein OsI_34875 [Oryza sa 0.958 0.629 0.817 0.0
>gi|224091118|ref|XP_002309184.1| predicted protein [Populus trichocarpa] gi|222855160|gb|EEE92707.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/410 (89%), Positives = 396/410 (96%)

Query: 1   MREKLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIG 60
           MREKLGFLVG+  LLCG  FGRFVVEKN+LK+TSP+ +KGVYECAIGNFGVPQYGGTL+G
Sbjct: 1   MREKLGFLVGVWLLLCGFCFGRFVVEKNNLKLTSPDSLKGVYECAIGNFGVPQYGGTLVG 60

Query: 61  TVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVA 120
           TV+YPKANQKACKGFD VD+SFKSRPGGLPTF+LVDRGDCYFTLKAWNAQ GGAAAILVA
Sbjct: 61  TVIYPKANQKACKGFDGVDISFKSRPGGLPTFVLVDRGDCYFTLKAWNAQNGGAAAILVA 120

Query: 121 DDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEA 180
           DDK EPLITMDTPEEENADA+YLQNITIPSALISKSLGDSIKK++S GEMVNMNLDWTEA
Sbjct: 121 DDKDEPLITMDTPEEENADADYLQNITIPSALISKSLGDSIKKAISNGEMVNMNLDWTEA 180

Query: 181 LPHPDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPE 240
           LPHPDERVEYEFWTNSNDECGPKC+SQI+F+KNFKGAAQILEQ+GYTQFTPHYITWYCPE
Sbjct: 181 LPHPDERVEYEFWTNSNDECGPKCDSQIEFIKNFKGAAQILEQKGYTQFTPHYITWYCPE 240

Query: 241 AFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWW 300
           AF+LSKQCKSQCINHGRYCAPDPEQDFS+GYDGKDVVVQNLRQACF+KVANES+KPWLWW
Sbjct: 241 AFVLSKQCKSQCINHGRYCAPDPEQDFSKGYDGKDVVVQNLRQACFYKVANESKKPWLWW 300

Query: 301 DYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQI 360
           DYVTDF+IRCPMKEKKYTKECA+QVI+S+GVDLKK+D C+GD EADV+N+VLK EQ  QI
Sbjct: 301 DYVTDFSIRCPMKEKKYTKECADQVIQSIGVDLKKIDICIGDHEADVENEVLKAEQHVQI 360

Query: 361 GKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSE 410
           GKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGF+ETTEPAICLSE
Sbjct: 361 GKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFEETTEPAICLSE 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255575588|ref|XP_002528694.1| Vacuolar sorting receptor 1 precursor, putative [Ricinus communis] gi|223531866|gb|EEF33683.1| Vacuolar sorting receptor 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359481218|ref|XP_002267833.2| PREDICTED: vacuolar-sorting receptor 1-like [Vitis vinifera] gi|297735537|emb|CBI18031.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|83284015|gb|ABC01915.1| vacuolar sorting receptor protein PV72-like protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|7484768|pir||T00044 vacuolar sorting receptor protein homolog PV72 - cucurbit gi|2943792|dbj|BAA25079.1| PV72 [Cucurbita cv. Kurokawa Amakuri] Back     alignment and taxonomy information
>gi|449439799|ref|XP_004137673.1| PREDICTED: vacuolar-sorting receptor 1-like [Cucumis sativus] gi|449497165|ref|XP_004160331.1| PREDICTED: vacuolar-sorting receptor 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147828306|emb|CAN66483.1| hypothetical protein VITISV_015390 [Vitis vinifera] Back     alignment and taxonomy information
>gi|218186303|gb|EEC68730.1| hypothetical protein OsI_37233 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|242069735|ref|XP_002450144.1| hypothetical protein SORBIDRAFT_05g001160 [Sorghum bicolor] gi|241935987|gb|EES09132.1| hypothetical protein SORBIDRAFT_05g001160 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|218185119|gb|EEC67546.1| hypothetical protein OsI_34875 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
TAIR|locus:2085136 623 VSR1 "vacuolar sorting recepto 0.990 0.653 0.798 4.7e-190
TAIR|locus:2046911 628 VSR3 "vaculolar sorting recept 0.985 0.644 0.735 2.9e-174
TAIR|locus:2046931 628 VSR4 "vacuolar sorting recepto 0.995 0.651 0.723 4.3e-173
TAIR|locus:2015726 631 VSR6 "VACUOLAR SORTING RECEPTO 0.970 0.632 0.596 2.1e-139
TAIR|locus:2044782 618 VSR5 "VACUOLAR SORTING RECEPTO 0.939 0.624 0.580 4.6e-128
TIGR_CMR|SO_3800 1215 SO_3800 "serine protease, subt 0.228 0.077 0.336 2.7e-06
TAIR|locus:2198733 536 SPPL5 "SIGNAL PEPTIDE PEPTIDAS 0.223 0.171 0.37 3.1e-05
TAIR|locus:2040971 540 SPPL3 "SIGNAL PEPTIDE PEPTIDAS 0.177 0.135 0.405 0.00011
UNIPROTKB|C9J8T4163 RNF13 "E3 ubiquitin-protein li 0.248 0.625 0.339 0.00034
UNIPROTKB|C9JYN7165 RNF13 "E3 ubiquitin-protein li 0.248 0.618 0.339 0.00038
TAIR|locus:2085136 VSR1 "vacuolar sorting receptor homolog 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1842 (653.5 bits), Expect = 4.7e-190, P = 4.7e-190
 Identities = 325/407 (79%), Positives = 375/407 (92%)

Query:     4 KLGFLVGILFLLCGLSFGRFVVEKNSLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVV 63
             KLG       L+  L+ GRFVVEKN+LKVTSP+ IKG+YECAIGNFGVPQYGGTL+GTVV
Sbjct:     2 KLGLFTLSFLLILNLAMGRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVV 61

Query:    64 YPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDK 123
             YPK+NQKACK + + D+SFKS+PG LPTF+L+DRGDCYFTLKAW AQ+ GAAAILVAD K
Sbjct:    62 YPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSK 121

Query:   124 TEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPH 183
              EPLITMDTPEE+ +DA+YLQNITIPSALI+K+LGDSIK +LSGG+MVNM LDWTE++PH
Sbjct:   122 AEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPH 181

Query:   184 PDERVEYEFWTNSNDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFI 243
             PDERVEYE WTNSNDECG KC++QI+F+KNFKGAAQILE+ G+TQFTPHYITWYCPEAF 
Sbjct:   182 PDERVEYELWTNSNDECGKKCDTQIEFLKNFKGAAQILEKGGHTQFTPHYITWYCPEAFT 241

Query:   244 LSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYV 303
             LSKQCKSQCINHGRYCAPDPEQDF++GYDGKDVVVQNLRQAC ++V N++ KPW+WWDYV
Sbjct:   242 LSKQCKSQCINHGRYCAPDPEQDFTKGYDGKDVVVQNLRQACVYRVMNDTGKPWVWWDYV 301

Query:   304 TDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKG 363
             TDFAIRCPMKEKKYTKECA+ +IKSLG+DLKKVD+C+GDPEADV+N VLK EQ++QIGKG
Sbjct:   302 TDFAIRCPMKEKKYTKECADGIIKSLGIDLKKVDKCIGDPEADVENPVLKAEQESQIGKG 361

Query:   364 SRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQETTEPAICLSE 410
             SRGDVTILPTLV+NNRQYRGKL+KGAVLKA+C+GFQE+TEPAICL+E
Sbjct:   362 SRGDVTILPTLVVNNRQYRGKLEKGAVLKAMCSGFQESTEPAICLTE 408
GO:0005509 "calcium ion binding" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005887 "integral to plasma membrane" evidence=ISS
GO:0006623 "protein targeting to vacuole" evidence=IGI;ISS;IMP;TAS
GO:0005886 "plasma membrane" evidence=ISS;IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA;TAS
GO:0009940 "amino-terminal vacuolar sorting propeptide binding" evidence=IDA
GO:0017119 "Golgi transport complex" evidence=IPI
GO:0007034 "vacuolar transport" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0006896 "Golgi to vacuole transport" evidence=ISS;IDA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2046911 VSR3 "vaculolar sorting receptor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046931 VSR4 "vacuolar sorting receptor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015726 VSR6 "VACUOLAR SORTING RECEPTOR 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044782 VSR5 "VACUOLAR SORTING RECEPTOR 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3800 SO_3800 "serine protease, subtilase family" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TAIR|locus:2198733 SPPL5 "SIGNAL PEPTIDE PEPTIDASE-LIKE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040971 SPPL3 "SIGNAL PEPTIDE PEPTIDASE-LIKE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|C9J8T4 RNF13 "E3 ubiquitin-protein ligase RNF13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9JYN7 RNF13 "E3 ubiquitin-protein ligase RNF13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P93484VSR1_PEANo assigned EC number0.73390.98050.6468N/Ano
P93026VSR1_ARATHNo assigned EC number0.79850.99020.6532yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VI000894
hypothetical protein (625 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
cd02125127 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) 4e-70
cd00538126 cd00538, PA, PA: Protease-associated (PA) domain 5e-17
cd02123153 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a 3e-16
cd04818118 cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas 6e-14
cd02132139 cd02132, PA_GO-like, PA_GO-like: Protease-associat 2e-13
pfam0222596 pfam02225, PA, PA domain 3e-11
cd04813117 cd04813, PA_1, PA_1: Protease-associated (PA) doma 3e-09
cd02129120 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as 3e-07
cd02127118 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease- 3e-06
cd02133143 cd02133, PA_C5a_like, PA_C5a_like: Protease-associ 8e-05
cd02126126 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as 1e-04
cd04816122 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease- 3e-04
cd02122138 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a 8e-04
>gnl|CDD|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information 
 Score =  216 bits (552), Expect = 4e-70
 Identities = 79/128 (61%), Positives = 97/128 (75%), Gaps = 1/128 (0%)

Query: 48  NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAW 107
           NFG+PQYGGTL G VVYPK N+  CK FD      KS PG  P  LL+DRG C+FTLKAW
Sbjct: 1   NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAW 60

Query: 108 NAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSG 167
           NAQ+ GAAA+LVAD+  EPL+TMDTPEE    A+Y++ ITIPSALI+K+ G+ +KK++S 
Sbjct: 61  NAQQAGAAAVLVADNVDEPLLTMDTPEES-GSADYIEKITIPSALITKAFGEKLKKAISN 119

Query: 168 GEMVNMNL 175
           GEMV + L
Sbjct: 120 GEMVVIKL 127

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 127
>gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain Back     alignment and domain information
>gnl|CDD|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>gnl|CDD|216938 pfam02225, PA, PA domain Back     alignment and domain information
>gnl|CDD|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>gnl|CDD|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>gnl|CDD|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>gnl|CDD|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>gnl|CDD|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 411
cd02125127 PA_VSR PA_VSR: Protease-associated (PA) domain-con 99.96
cd02126126 PA_EDEM3_like PA_EDEM3_like: protease associated d 99.88
cd02122138 PA_GRAIL_like PA _GRAIL_like: Protease-associated 99.88
cd02123153 PA_C_RZF_like PA_C-RZF_ like: Protease-associated 99.88
cd02127118 PA_hPAP21_like PA_hPAP21_like: Protease-associated 99.88
cd02132139 PA_GO-like PA_GO-like: Protease-associated domain 99.87
cd04813117 PA_1 PA_1: Protease-associated (PA) domain subgrou 99.82
cd04816122 PA_SaNapH_like PA_SaNapH_like: Protease-associated 99.78
cd02129120 PA_hSPPL_like PA_hSPPL_like: Protease-associated d 99.78
KOG3920193 consensus Uncharacterized conserved protein, conta 99.77
cd02130122 PA_ScAPY_like PA_ScAPY_like: Protease-associated d 99.75
cd04818118 PA_subtilisin_1 PA_subtilisin_1: Protease-associat 99.75
cd02124129 PA_PoS1_like PA_PoS1_like: Protease-associated (PA 99.67
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 99.65
cd04817139 PA_VapT_like PA_VapT_like: Protease-associated dom 99.64
PF02225101 PA: PA domain; InterPro: IPR003137 The PA (Proteas 99.52
cd00538126 PA PA: Protease-associated (PA) domain. The PA dom 99.52
KOG2442 541 consensus Uncharacterized conserved protein, conta 99.41
cd02133143 PA_C5a_like PA_C5a_like: Protease-associated domai 99.4
cd04819127 PA_2 PA_2: Protease-associated (PA) domain subgrou 99.36
cd04815134 PA_M28_2 PA_M28_2: Protease-associated (PA) domain 99.23
cd02120126 PA_subtilisin_like PA_subtilisin_like: Protease-as 99.1
PF02128378 Peptidase_M36: Fungalysin metallopeptidase (M36); 99.07
cd02128183 PA_TfR PA_TfR: Protease-associated domain containi 98.9
cd02121220 PA_GCPII_like PA_GCPII_like: Protease-associated d 98.34
cd04814142 PA_M28_1 PA_M28_1: Protease-associated (PA) domain 98.29
cd04822151 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do 98.24
cd04820137 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do 98.09
cd02131153 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso 97.93
cd03023154 DsbA_Com1_like DsbA family, Com1-like subfamily; c 96.25
cd04821157 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do 94.01
PF13462162 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV 93.79
cd03024201 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D 90.08
cd03022192 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car 87.46
cd03019178 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m 83.01
PF01323193 DSBA: DSBA-like thioredoxin domain; InterPro: IPR0 82.63
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information 
Probab=99.96  E-value=1.9e-28  Score=212.35  Aligned_cols=127  Identities=62%  Similarity=1.063  Sum_probs=106.4

Q ss_pred             cCCCCCCCCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCCc
Q 015215           48 NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPL  127 (411)
Q Consensus        48 ~FG~~~~g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~l  127 (411)
                      |||.|+||++++|.|++++++.+||++++....+.+.++...++|+||+||+|+|.+|++|||++||++|||||+.++++
T Consensus         1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~   80 (127)
T cd02125           1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL   80 (127)
T ss_pred             CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence            79999999999999999999999999997632122223456799999999999999999999999999999999988877


Q ss_pred             eecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEE
Q 015215          128 ITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL  175 (411)
Q Consensus       128 ~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l  175 (411)
                      +.|..++++. ..++..+++||+++|++++|+.|++.+++|..|+++|
T Consensus        81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~  127 (127)
T cd02125          81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL  127 (127)
T ss_pred             ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence            8887554321 1133457899999999999999999999999998874

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 Back     alignment and domain information
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] Back     alignment and domain information
>cd00538 PA PA: Protease-associated (PA) domain Back     alignment and domain information
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 Back     alignment and domain information
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 Back     alignment and domain information
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases Back     alignment and domain information
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) Back     alignment and domain information
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like Back     alignment and domain information
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 Back     alignment and domain information
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 Back     alignment and domain information
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 Back     alignment and domain information
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) Back     alignment and domain information
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti Back     alignment and domain information
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 Back     alignment and domain information
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A Back     alignment and domain information
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif Back     alignment and domain information
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway Back     alignment and domain information
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold Back     alignment and domain information
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 3e-19
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 5e-06
3gyk_A175 27KDA outer membrane protein; APC61738.2, siliciba 4e-05
3bci_A186 Disulfide bond protein A; thiol-disulfide oxidored 2e-04
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 Back     alignment and structure
 Score = 84.1 bits (207), Expect = 3e-19
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 12/137 (8%)

Query: 44  CAIGNFGVPQYGGTLIGTVVYPKA--NQKACKGFDEVDLSFKSRPGGLPTFL-LVDRGD- 99
              G +G       + G +V P       AC       +          ++L L+ RG  
Sbjct: 56  SEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGG 115

Query: 100 CYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGD 159
           C F  K   A + GA+  ++ +        +           +   + I + +I    G 
Sbjct: 116 CTFADKIHLAYERGASGAVIFNFPGTRNEVIPMS--------HPGAVDIVAIMIGNLKGT 167

Query: 160 SIKKSLSGGEMVNMNLD 176
            I +S+  G  V M ++
Sbjct: 168 KILQSIQRGIQVTMVIE 184
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 Back     alignment and structure
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} Length = 175 Back     alignment and structure
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A Length = 186 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 99.9
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 99.02
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 98.92
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 98.45
3kas_A 640 Transferrin receptor protein 1; transferrin recept 98.45
3i6s_A649 Subtilisin-like protease; PA-domain, FN3-domain, h 98.04
1y9z_A441 Alkaline serine protease; subtilisin-like alpha/be 97.88
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 97.78
3gha_A202 Disulfide bond formation protein D; BDBD, DSBA-lik 96.44
3bci_A186 Disulfide bond protein A; thiol-disulfide oxidored 96.07
3gyk_A175 27KDA outer membrane protein; APC61738.2, siliciba 95.53
3gmf_A205 Protein-disulfide isomerase; oxidoreductase, PSI-2 93.79
2imf_A203 HCCA isomerase, 2-hydroxychromene-2-carboxylate is 90.86
3hz8_A193 Thiol:disulfide interchange protein DSBA; thiol-ox 90.83
3fz5_A202 Possible 2-hydroxychromene-2-carboxylate isomeras; 90.09
3f4s_A226 Alpha-DSBA1, putative uncharacterized protein; thi 90.08
2rem_A193 Disulfide oxidoreductase; disulfide oxidoreductase 89.32
3vta_A621 Cucumisin; subtilisin-like fold, serine protease, 88.41
4dvc_A184 Thiol:disulfide interchange protein DSBA; pilus as 88.23
3gl5_A239 Putative DSBA oxidoreductase SCO1869; probable DSB 88.01
3h93_A192 Thiol:disulfide interchange protein DSBA; disulfid 87.16
2znm_A195 Thiol:disulfide interchange protein DSBA; thioredo 86.19
3hd5_A195 Thiol:disulfide interchange protein DSBA; protein 82.86
2in3_A216 Hypothetical protein; DSBA family, FRNE-like subfa 81.33
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
Probab=99.90  E-value=1.2e-22  Score=186.26  Aligned_cols=126  Identities=21%  Similarity=0.309  Sum_probs=103.3

Q ss_pred             eeeeeccCCCCCCCCceEEEEeccc--CCccCCCCCCCCCCccc-CCCCCCCeEEEEeccC-CCHHHHHHHHHhcCCcEE
Q 015215           42 YECAIGNFGVPQYGGTLIGTVVYPK--ANQKACKGFDEVDLSFK-SRPGGLPTFLLVDRGD-CYFTLKAWNAQKGGAAAI  117 (411)
Q Consensus        42 y~~~~a~FG~~~~g~~l~G~lv~~~--~~~~gC~~~~~~~~~~~-~~~~~~g~IvLV~RG~-CsF~~Kv~nAq~aGA~av  117 (411)
                      .....|+||...+.+.++|.|+++.  ++.+||++.+++..+.. ..+..+++||||+||+ |+|.+|++|||++||+||
T Consensus        54 ~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~av  133 (194)
T 3icu_A           54 ELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGA  133 (194)
T ss_dssp             EEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEE
T ss_pred             ecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEE
Confidence            5667899999999999999999876  47899999876431110 0012468999999999 999999999999999999


Q ss_pred             EEEeCCC--CCceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEEEe
Q 015215          118 LVADDKT--EPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDW  177 (411)
Q Consensus       118 II~nn~~--~~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l~~  177 (411)
                      ||||+..  +.+++|..++          ..+||++||++++|+.|+++|++|.+|+++|..
T Consensus       134 IIyNn~~~g~~~~~m~~~~----------~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~v  185 (194)
T 3icu_A          134 VIFNFPGTRNEVIPMSHPG----------AVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEV  185 (194)
T ss_dssp             EEECCTTCTTCCCCCCCTT----------CCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEeCCCCCCceeeecCCC----------CCceeEEEECHHHHHHHHHHHHCCCeEEEEEEC
Confidence            9999852  3457785321          357999999999999999999999999998877
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Back     alignment and structure
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Back     alignment and structure
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Back     alignment and structure
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A Back     alignment and structure
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A Back     alignment and structure
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} Back     alignment and structure
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans} Back     alignment and structure
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A* Back     alignment and structure
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A Back     alignment and structure
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2} Back     alignment and structure
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A* Back     alignment and structure
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} Back     alignment and structure
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Back     alignment and structure
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A Back     alignment and structure
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3} Back     alignment and structure
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 Back     alignment and structure
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A Back     alignment and structure
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} Back     alignment and structure
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
d1de4c2193 Transferrin receptor ectodomain, apical domain {Hu 98.7
d3bi1a2233 Glutamate carboxypeptidase II {Human (Homo sapiens 98.36
d1z6ma1172 Hypothetical protein EF0770 {Enterococcus faecalis 90.61
d1beda_181 Disulfide-bond formation facilitator (DsbA) {Vibri 89.26
d1fvka_188 Disulfide-bond formation facilitator (DsbA) {Esche 86.09
d1un2a_ 195 Disulfide-bond formation facilitator (DsbA) {Esche 82.64
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.5e-08  Score=90.08  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=68.1

Q ss_pred             CCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCC--------
Q 015215           55 GGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP--------  126 (411)
Q Consensus        55 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~--------  126 (411)
                      .++++|.+||..   . +...+..  .+  ..+++|+|+|++||.|+|.+|++|||++||+|||||.+..+.        
T Consensus        36 ~G~v~g~lVy~n---~-G~~~Df~--~L--~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~  107 (193)
T d1de4c2          36 AATVTGKLVHAN---F-GTKKDFE--DL--YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELS  107 (193)
T ss_dssp             CEEEEECEEECS---T-TCHHHHH--TC--SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCC
T ss_pred             CCceeEEEEEcc---C-CCHHHHH--Hh--ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccc
Confidence            457999999853   1 2221111  11  124679999999999999999999999999999999764220        


Q ss_pred             c---eecCCCCcc-c----c-c------ccccCCcceeEEEEehHhHHHHHHHHh
Q 015215          127 L---ITMDTPEEE-N----A-D------AEYLQNITIPSALISKSLGDSIKKSLS  166 (411)
Q Consensus       127 l---~~m~~p~~~-~----~-~------~~~~~~i~IPsv~Is~~~G~~L~~~l~  166 (411)
                      .   ..+. ++|- +    + +      .....-.+||+.=|+..+++.|++.|.
T Consensus       108 ~~g~~~~~-~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         108 FFGHAHLG-TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             CCEECCSS-SSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             cccccccC-CCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence            0   1111 1110 0    0 0      001123579999999999999999984
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure