Citrus Sinensis ID: 015223

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
Protein Sequence
MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHcccccHHcccccccccccccEEHccEEEEEcccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEHHEHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHc
Coil and Loop (DISEMBL)
mvtdsenceeakgfKASIFFLALYLVAIGsgcvkpnmiahgadqfdqsnpkqskklSSYFNAAYFAFSTGELVALTVLVWVQthsgmdvgFGVSAAAMALGLFGVVSGtlyyrnkrpqgsiftPIAQVFVAAMLKrkqicpsnpqmlhglnqnnvpndsgsvfltQRFRFLDKACIKvedgtnkkespwrlcTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQgsamnnkltknfhvppaslqsipyIMLVILVPlydkffvpfarkytghesgisplqrIGFGLFLATFSMISAALMEKKRRdsaldsgktlsifsitPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTssssnrgwlsendlstktglifstgc
Flexible Loop (DISEMBL)
mvtdsenceeaKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVedgtnkkespwrlCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSsssnrgwlsendlstktglifstgc
Low Complexity Region (SEG)
MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTycsysfgfylssllvsfVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC
Disordered region (IsUnstruct)
************GFKASIFFLALYLVAIGSGCVKPNMIAHG***************SSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSN*QMLHGL********SGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALME*********SGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT**************************
Disordered Region (DISOPRED)
***********KGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQM********************RFRFLDKACI**************LCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC
Disordered Region (DISEMBL)
**********AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALME*********SGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK*********WLSENDLSTKTGLIFSTGC
Disordered Region (DISPRO)
*****ENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNN*PNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	411	2.2.26 [Sep-21-2011]
Q93VV5	591	Probable peptide/nitrate	yes	no	0.956	0.664	0.752	1e-179
Q56XQ6	601	Probable peptide/nitrate	no	no	0.956	0.653	0.679	1e-158
Q8H157	585	Nitrate transporter 1.2 O	no	no	0.944	0.663	0.406	6e-82
Q9LFB8	570	Peptide transporter PTR5	no	no	0.948	0.684	0.398	2e-80
Q8VYE4	567	Probable peptide/nitrate	no	no	0.968	0.701	0.395	3e-78
Q9M390	570	Peptide transporter PTR1	no	no	0.929	0.670	0.386	3e-78
P46032	585	Peptide transporter PTR2	no	no	0.946	0.664	0.38	3e-76
Q93Z20	590	Probable peptide/nitrate	no	no	0.944	0.657	0.368	9e-76
Q9LVE0	590	Nitrate transporter 1.3 O	no	no	0.924	0.644	0.385	7e-75
Q9M1I2	555	Probable peptide/nitrate	no	no	0.931	0.690	0.378	4e-72

>sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1

 Score =  627 bits (1616), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 301/400 (75%), Positives = 350/400 (87%), Gaps = 7/400 (1%)

Query: 5   SENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY 64
            + CEEAKGFKA IFF+ALYLVA+GSGCVKPNMIAHGADQF QS+PKQSK+LSSYFNAAY
Sbjct: 149 DQTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAY 208

Query: 65  FAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTP 124
           FAFS GEL+ALT+LVWVQTHSGMD+GFGVSAAAM +G+  +VSGT+Y+RNKRP+ SIFTP
Sbjct: 209 FAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTP 268

Query: 125 IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPND---SGSVFLTQRFRFLDKACIKVEDG 181
           IA V VAA+LKRK   PS+P+MLHG   ++V ND   S ++  T RFRFLDKACIK++D 
Sbjct: 269 IAHVIVAAILKRKLASPSDPRMLHG--DHHVANDVVPSSTLPHTPRFRFLDKACIKIQD- 325

Query: 182 TNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN 241
           TN KESPWRLCTVTQVEQVK LIS+VPIFA TI+FNTILAQLQTFSVQQGS+MN +L+ +
Sbjct: 326 TNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSNS 385

Query: 242 FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMIS 301
           FH+PPASLQ+IPYIML+ LVPLYD F VPFARK TGH SGI PL RIG GLFL+TFSM+S
Sbjct: 386 FHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVS 445

Query: 302 AALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTA 361
           AA++EKKRRDS++  G+ LSIF ITPQFLIFG+SEMFTAVGLIEFFYKQS KGM++FL A
Sbjct: 446 AAMLEKKRRDSSVLDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMA 505

Query: 362 MTYCSYSFGFYLSSLLVSFVNKVTSSS-SNRGWLSENDLS 400
           +TYCSYSFGFY SS+LVS VNK+TS+S  ++GWL ENDL+
Sbjct: 506 LTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLN 545

Arabidopsis thaliana (taxid: 3702)

>sp|Q56XQ6|PTR15_ARATH Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1

 Score =  557 bits (1435), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 274/403 (67%), Positives = 330/403 (81%), Gaps = 10/403 (2%)

Query: 1   MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 60
           M + + +C EA G+KA+  + AL LVA+GSGC+KPN+I+HGA+QF +   K  +KLSS+F
Sbjct: 143 MKSTTIHCVEANGYKAATLYTALCLVALGSGCLKPNIISHGANQFQR---KDLRKLSSFF 199

Query: 61  NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 120
           NAAYFAFS G+L+ALT+LVWVQTHSGMDVGFGVSAA MA G+  +V+GT +YRNK P GS
Sbjct: 200 NAAYFAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSFYRNKPPSGS 259

Query: 121 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVED 180
           IFTPIAQVFVAA+ KRKQICPSNP M+H  + + V      +  + +FRFLDKACIK + 
Sbjct: 260 IFTPIAQVFVAAITKRKQICPSNPNMVHQPSTDLV--RVKPLLHSNKFRFLDKACIKTQG 317

Query: 181 GTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTK 240
                ESPWRLCT+ QV QVK+L+SV+PIFACTIIFNTILAQLQTFSVQQGS+MN  +TK
Sbjct: 318 --KAMESPWRLCTIEQVHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHITK 375

Query: 241 NFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMI 300
            F +PPASLQ+IPYI+L+  VPLY+ FFVP ARK TG++SGISPLQRIG GLFLATFSM+
Sbjct: 376 TFQIPPASLQAIPYIILIFFVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFSMV 435

Query: 301 SAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLT 360
           +AAL+EKKRR+S L+    LSIF I PQFLIFGLSEMFTAVGL+EFFYKQS + MQ+FLT
Sbjct: 436 AAALVEKKRRESFLEQNVMLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSSQSMQSFLT 495

Query: 361 AMTYCSYSFGFYLSSLLVSFVNKVTSSS---SNRGWLSENDLS 400
           AMTYCSYSFGFYLSS+LVS VN+VTSS+   +  GWL +NDL+
Sbjct: 496 AMTYCSYSFGFYLSSVLVSTVNRVTSSNGSGTKEGWLGDNDLN 538

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1

 Score =  305 bits (780), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 169/416 (40%), Positives = 253/416 (60%), Gaps = 28/416 (6%)

Query: 4   DSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA 63
           DS  CEE  G KA++ F+ LYLVA+G G +K ++ +HGA+QFD+S PK  K+ S++FN  
Sbjct: 129 DSPTCEEVSGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFNYF 188

Query: 64  YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFT 123
            F  + G LVA+T +VW++ + G + GFGVS  A+ + +   +SG+ +YRNK P GS  T
Sbjct: 189 VFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLT 248

Query: 124 PIAQVFVAAMLK------------RKQICPSNPQMLHGL----NQNNVPNDSGSVFLTQR 167
            I +V +AA +K               + PSN  +  G     +Q  +        L  R
Sbjct: 249 TILKVLLAASVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKPRQEEALPPR 308

Query: 168 FRFLDKACIKVEDGTNKKESPWRL--CTVTQVEQVKVLISVVPIFACTIIFNTILAQLQT 225
            +  +   +KV +G   ++   RL  CTV QVE VK+++ ++PIFACTI+ N  LAQL T
Sbjct: 309 AQLTNS--LKVLNGAADEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCLAQLST 366

Query: 226 FSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPL 285
           FSVQQ ++MN K+  +  +PPASL   P + ++IL P+YD   +PFARK T  E+G++ L
Sbjct: 367 FSVQQAASMNTKI-GSLKIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETGVTHL 425

Query: 286 QRIGFGLFLATFSMISAALMEKKRRDSALDSG-----KTLSI--FSITPQFLIFGLSEMF 338
           QRIG GL L+  +M  AAL+E KR+  A DSG     +TL +    I  Q+L  G +++F
Sbjct: 426 QRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSKETLPVTFLWIALQYLFLGSADLF 485

Query: 339 TAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWL 394
           T  GL+E+F+ ++   M++  T++++ S + G+YLSS++VS VN +T SS N  WL
Sbjct: 486 TLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNSITGSSGNTPWL 541

Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  299 bits (766), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 160/402 (39%), Positives = 247/402 (61%), Gaps = 12/402 (2%)

Query: 6   ENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF 65
           E C    G + +I F+ALYL+A+G+G +KP + + GADQFD ++ K+ +  SS+FN  YF
Sbjct: 130 ETCHATAG-QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYF 188

Query: 66  AFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPI 125
             + G ++A +VLVW+Q + G   G GV   AMA+ +    +G+ +YR ++P GS  T +
Sbjct: 189 VINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRM 248

Query: 126 AQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFL--TQRFRFLDKACIKVEDGTN 183
            QV VA+  K K   P +  +L+  NQ+   +  GS  L  T+   F DKA ++ E    
Sbjct: 249 LQVIVASCRKSKVKIPEDESLLYE-NQDAESSIIGSRKLEHTKILTFFDKAAVETESDNK 307

Query: 184 --KKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN 241
              K S W+LCTVTQVE++K LI ++PI+A  I+F ++ +Q+ T  V QG+ ++  +  N
Sbjct: 308 GAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPN 367

Query: 242 FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMIS 301
           F +P ASL     + ++   P+YDK  VPFARKYTGHE G + LQRIG GL ++ FSM+S
Sbjct: 368 FKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVS 427

Query: 302 AALMEKKR----RDSALDSGKT--LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM 355
           A ++E  R    +   L + +T  ++IF   PQ+ + G +E+FT +G +EFFY Q+   M
Sbjct: 428 AGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAM 487

Query: 356 QAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 397
           ++  +A++  + +FG YLS+ LV+ V KVT S    GW+++N
Sbjct: 488 RSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKN 529

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1

 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 163/412 (39%), Positives = 239/412 (58%), Gaps = 14/412 (3%)

Query: 7   NCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA 66
            CE   G KA+  F+ LYLV++G G +K ++ +HGA+QFD+  PK  K+ S++FN   F 
Sbjct: 137 RCEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFC 196

Query: 67  FSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIA 126
            S G LVA+T +VW++ + G + GFGVS  ++ L +   + G+ +Y+NK P+GS  T I 
Sbjct: 197 LSCGALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIF 256

Query: 127 QVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKE 186
           +V +AA +       S+        Q+     + S  LT     L+KA         K  
Sbjct: 257 KVLLAASIVSCSSKTSSNHFTSREVQSEHEEKTPSQSLTNSLTCLNKAI------EGKTH 310

Query: 187 SPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPP 246
             W  CTV QVE VK+++ ++PIF CTI+ N  LAQL T+SV Q + MN K+  NF+VP 
Sbjct: 311 HIWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKIV-NFNVPS 369

Query: 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALME 306
           ASL   P + ++IL P YD   +PFARK T  E GI+ LQRIG GL L+  +M  AAL+E
Sbjct: 370 ASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVLSIVAMAVAALVE 429

Query: 307 KKRRDSA-----LDSGKTLSI--FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFL 359
            KR+  A     LDS +TL I    I  Q+L  G +++FT  GL+EFF+ ++   M++  
Sbjct: 430 LKRKQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLA 489

Query: 360 TAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC 411
           T++++ S + G+YLSS++V  VN+VT S+    WL E     +  L +   C
Sbjct: 490 TSLSWASLALGYYLSSVMVPIVNRVTKSAGQSPWLGEKLNRNRLDLFYWLMC 541

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 152/393 (38%), Positives = 246/393 (62%), Gaps = 11/393 (2%)

Query: 15  KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVA 74
           + ++FF+ALY++A+G+G +KP + + GADQFD+++  +  K SS+FN  YF+ + G L+A
Sbjct: 138 QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIA 197

Query: 75  LTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAML 134
            TVLVW+Q + G   GFGV   AM + +     G+ +YR +RP GS  T I QV VAA  
Sbjct: 198 ATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFR 257

Query: 135 KRKQICPSNPQMLHGLNQNNVPNDSGSVFL--TQRFRFLDKACIKVEDGTNK--KESPWR 190
           K     P +  +L     ++  N  GS  L  T   +F DKA ++ +  + K  + +PWR
Sbjct: 258 KISVKVPEDKSLLFE-TADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWR 316

Query: 191 LCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQ 250
           LC+VTQVE++K +I+++P++A  I+F T+ +Q+ T  V QG+ M+  + KNF +P ASL 
Sbjct: 317 LCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLS 376

Query: 251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRR 310
               + ++   P+YD+F +P ARK+T +E G + LQR+G GL ++ F+MI+A ++E  R 
Sbjct: 377 LFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRL 436

Query: 311 D-----SALDSGKT-LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY 364
           D     +A D  +  +SIF   PQ+L+ G +E+FT +G +EFFY Q+   M++  +A++ 
Sbjct: 437 DYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL 496

Query: 365 CSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 397
            + + G YLS++LV+ V K+T  +   GW+ +N
Sbjct: 497 TTVALGNYLSTVLVTVVMKITKKNGKPGWIPDN 529

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  286 bits (731), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/400 (38%), Positives = 242/400 (60%), Gaps = 11/400 (2%)

Query: 8   CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAF 67
           C  A   + ++FF  LYL+A+G+G +KP + + GADQFD ++ ++  + +S+FN  YF+ 
Sbjct: 149 CPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSI 208

Query: 68  STGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQ 127
           + G LV+ ++LVW+Q + G  +GFG+    M L +     GT  YR ++P GS  T I+Q
Sbjct: 209 NIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQ 268

Query: 128 VFVAAMLKRKQICPSNPQMLHGL-NQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKE 186
           V VA+  K     P +  +L+   ++N+    S  +  T   ++LDKA +  E+ +   +
Sbjct: 269 VVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGD 328

Query: 187 --SPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV 244
             + WRLCTVTQVE++K+LI + PI+A  IIF+ + AQ+ T  VQQG AMN K+  +F +
Sbjct: 329 YSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKI-GSFQL 387

Query: 245 PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAAL 304
           PPA+L +     ++I VPLYD+F VP ARK+TG + G + +QR+G GLF++   M +AA+
Sbjct: 388 PPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAI 447

Query: 305 MEKKRRDSALDSGKT-------LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQA 357
           +E  R   A D G         +S+    PQ+ I G +E+F  +G +EFFY QS   M++
Sbjct: 448 VEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRS 507

Query: 358 FLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 397
             +A+   + + G YLSSL+++ V   T+ +   GW+S+N
Sbjct: 508 LCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDN 547

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  284 bits (727), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 242/393 (61%), Gaps = 5/393 (1%)

Query: 8   CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAF 67
           C  A   + ++FF  LYL+A+G+G +KP + + GADQFD ++P++  + +S+FN  YF+ 
Sbjct: 163 CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSI 222

Query: 68  STGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQ 127
           + G  ++ T+LVWVQ + G  +GF +    M + +     GT  YR ++P GS  T + Q
Sbjct: 223 NIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQ 282

Query: 128 VFVAAMLKRKQICPSNPQMLHGLNQ-NNVPNDSGSVFLTQRFRFLDKACI--KVEDGTNK 184
           V VAA  K K   P +   L+   + N++   S  +  T  ++FLDKA +  + E  +  
Sbjct: 283 VLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGA 342

Query: 185 KESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV 244
             +PW+LCTVTQVE+VK LI + PI+A  I+++ + +Q+ T  VQQG +M N++ ++F +
Sbjct: 343 FSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSM-NRIIRSFEI 401

Query: 245 PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAAL 304
           PPAS      ++++I +P+YD+F VPF R++TG   G++ LQR+G GLFL+  S+ +AA+
Sbjct: 402 PPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAI 461

Query: 305 MEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY 364
           +E  R   A D    +SIF   PQ+++ G++E+F  +G +EFFY +S   M++  +A+  
Sbjct: 462 VETVRLQLAQDF-VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALAL 520

Query: 365 CSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 397
            + + G YLSSL+++ V   T+     GW+ ++
Sbjct: 521 LNTAVGSYLSSLILTLVAYFTALGGKDGWVPDD 553

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVE0|PTR33_ARATH Nitrate transporter 1.3 OS=Arabidopsis thaliana GN=NRT1.3 PE=1 SV=1

 Score =  281 bits (719), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 153/397 (38%), Positives = 243/397 (61%), Gaps = 17/397 (4%)

Query: 6   ENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF 65
             C EA G + ++ ++ALY +A+G G +K N+   G+DQFD S+PK+ K++  +FN  YF
Sbjct: 140 HQCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFFFNRFYF 199

Query: 66  AFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPI 125
           + S G L A+  LV+VQ + G   G+G+SAA M +    ++ GT  YR K+P+GS FT I
Sbjct: 200 SISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKGSPFTTI 259

Query: 126 AQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACI-KVEDGTNK 184
            +V   A  KRK+  P++P +L+G +   VP+       T+  + LDKA I K E   + 
Sbjct: 260 WRVGFLAWKKRKESYPAHPSLLNGYDNTTVPH-------TEMLKCLDKAAISKNESSPSS 312

Query: 185 KE----SPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTK 240
           K+     PW + TVTQVE+VK+++ +VPI+A  I+F TI +Q+ TF+V+Q + M+ KL  
Sbjct: 313 KDFEEKDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATFMDRKL-G 371

Query: 241 NFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMI 300
           +F VP  S  +   + +++   L ++ FVP  R+ T    GI+ LQRIG GL  +  +M 
Sbjct: 372 SFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVFSMAAMA 431

Query: 301 SAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLT 360
            AA++E  RR++A+++ K +S F + PQ+ + G  E F  VG +EFF +++ + M++  T
Sbjct: 432 VAAVIENARREAAVNNDKKISAFWLVPQYFLVGAGEAFAYVGQLEFFIREAPERMKSMST 491

Query: 361 AMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 397
            +   + S GF++SSLLVS V++VT    ++ WL  N
Sbjct: 492 GLFLSTISMGFFVSSLLVSLVDRVT----DKSWLRSN 524

Low-affinity nitrate transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  272 bits (695), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 153/404 (37%), Positives = 240/404 (59%), Gaps = 21/404 (5%)

Query: 11  AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTG 70
           A+  +  +FF+ALY++A+G G  KP ++   ADQF ++N ++    +S+FN  Y A    
Sbjct: 109 ARRMREKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLA 168

Query: 71  ELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFV 130
             +A+  L+++Q      +GF + A ++ + +   + G   YR + P GS FT +AQV V
Sbjct: 169 SSIAVLALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMV 228

Query: 131 AAMLKRKQICPSNPQMLHGL-----NQNNVPN-DSGSVFL---TQRFRFLDKACIKVEDG 181
           AA+ K +    S+ +  +GL     +++ + + +S  V+L   T +FRFLDKA I  E  
Sbjct: 229 AALKKWRL---SSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEID 285

Query: 182 TNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN 241
            NK  +PWRLCTV QVE+VK+++ ++PI+   I+F   L QL TF ++QGS M+  +  +
Sbjct: 286 HNKNRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNH 345

Query: 242 FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMIS 301
           F +PPA+ QSI  + ++IL+PLYD+ FVP  RK T H SGI+ LQRIG GLF+ATF+M+ 
Sbjct: 346 FTIPPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVI 405

Query: 302 AALMEKKR----RDSAL-DSGKT---LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK 353
             L+E KR    RD  L DS K    +S   + PQ+++ G+ ++FT VG+ E FY Q  +
Sbjct: 406 CGLVEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPE 465

Query: 354 GMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSEN 397
            M++   A+       G ++S+ ++S V  + S S    WL  N
Sbjct: 466 TMRSIGAAIFISVVGVGSFVSTGIISTVQTI-SKSHGEEWLVNN 508

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
224120010	613	predicted protein [Populus trichocarpa]	0.970	0.650	0.814	0.0
224129508	625	predicted protein [Populus trichocarpa]	0.970	0.638	0.806	0.0
356543362	612	PREDICTED: probable peptide/nitrate tran	0.958	0.643	0.772	0.0
225465269	607	PREDICTED: probable peptide/nitrate tran	0.963	0.652	0.78	0.0
359493531	592	PREDICTED: probable peptide/nitrate tran	0.963	0.668	0.767	0.0
147832226	630	hypothetical protein VITISV_037742 [Viti	0.956	0.623	0.777	1e-180
297840607	592	proton-dependent oligopeptide transport	0.956	0.663	0.76	1e-179
224127762	600	predicted protein [Populus trichocarpa]	0.973	0.666	0.748	1e-177
15218903	591	putative peptide/nitrate transporter [Ar	0.956	0.664	0.752	1e-177
5080808	474	Similar to nitrate and oligopeptide tran	0.953	0.827	0.754	1e-177

>gi|224120010|ref|XP_002331115.1| predicted protein [Populus trichocarpa] gi|222872843|gb|EEF09974.1| predicted protein [Populus trichocarpa]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/409 (81%), Positives = 369/409 (90%), Gaps = 10/409 (2%)

Query: 1   MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 60
           M+TD ENC EAKG K+ IFF+ALYLVA+GSGCVKPNMIAHG DQF+QSNPKQSKKLS+YF
Sbjct: 138 MLTDGENCVEAKGVKSLIFFVALYLVALGSGCVKPNMIAHGGDQFNQSNPKQSKKLSTYF 197

Query: 61  NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 120
           NAAYFAFS GEL ALT+LVW+QTHSGMDVGFGVSAA MA+GL  +VSG LYYRNK PQGS
Sbjct: 198 NAAYFAFSMGELFALTLLVWIQTHSGMDVGFGVSAAVMAMGLISLVSGNLYYRNKPPQGS 257

Query: 121 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPN--------DSGSVFLTQRFRFLD 172
           IFTPIAQVFVAA+LKRKQICPSNPQMLHG +QN+V +        DSGS+  TQRFRFLD
Sbjct: 258 IFTPIAQVFVAAILKRKQICPSNPQMLHG-SQNSVLDNGIVAPSADSGSLAHTQRFRFLD 316

Query: 173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGS 232
           KACIK+EDGTN KESPWRLC+VTQVEQVK+LIS +PIFACTI+FNTILAQLQTFSVQQG 
Sbjct: 317 KACIKIEDGTNIKESPWRLCSVTQVEQVKILISAIPIFACTIVFNTILAQLQTFSVQQGG 376

Query: 233 AMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL 292
           AM+ +L K+FH+PPASLQSIPYI+L+I+VPLYD FFVP ARK TGHESGISPLQRIG GL
Sbjct: 377 AMDTQLAKSFHIPPASLQSIPYIILIIVVPLYDTFFVPLARKITGHESGISPLQRIGAGL 436

Query: 293 FLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSL 352
           F ATFSM+SAA+MEKKRRD+A+DS K LSIF ITPQFLIFGLSEM TAVGLIEFFYKQSL
Sbjct: 437 FFATFSMVSAAIMEKKRRDAAVDSNKILSIFWITPQFLIFGLSEMLTAVGLIEFFYKQSL 496

Query: 353 KGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT-SSSSNRGWLSENDLS 400
           KGMQAFLTA+TYCSYSFGFYLSSLLVS VNK+T SSSSN+GWLS+NDL+
Sbjct: 497 KGMQAFLTAITYCSYSFGFYLSSLLVSLVNKITSSSSSNQGWLSDNDLN 545

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129508|ref|XP_002328734.1| predicted protein [Populus trichocarpa] gi|222839032|gb|EEE77383.1| predicted protein [Populus trichocarpa]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/409 (80%), Positives = 367/409 (89%), Gaps = 10/409 (2%)

Query: 1   MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 60
           M+T  ENC EAKGFK  IFF+ALY+VA+GSGCVKPNMIAHG DQF+QSNPKQSKKLS+YF
Sbjct: 138 MLTGGENCIEAKGFKTLIFFVALYMVALGSGCVKPNMIAHGGDQFNQSNPKQSKKLSTYF 197

Query: 61  NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 120
           NAAYFAFS GEL ALT+LVWVQT+SGMDVGFGVSAA MA+GL  +VSGTLYYRNK PQGS
Sbjct: 198 NAAYFAFSMGELFALTLLVWVQTNSGMDVGFGVSAAVMAMGLISLVSGTLYYRNKAPQGS 257

Query: 121 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPN--------DSGSVFLTQRFRFLD 172
           IFTPIAQVFVAAM KRKQ CP+NPQMLHG +QN+VP+        D   +  TQRFRFLD
Sbjct: 258 IFTPIAQVFVAAMFKRKQTCPANPQMLHG-SQNSVPSNGLVDPSSDPCRLVHTQRFRFLD 316

Query: 173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGS 232
           KACIKVEDG+N+KESPWRLC+VTQVEQVK+LIS +PIFACTI+FNTILAQLQTFSVQQGS
Sbjct: 317 KACIKVEDGSNRKESPWRLCSVTQVEQVKILISAIPIFACTIVFNTILAQLQTFSVQQGS 376

Query: 233 AMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL 292
           AM+ +LTK+FH+PPASLQSIPYI+L+ +VPLY+ FFVPFARK TGHESGISPLQRIG GL
Sbjct: 377 AMDTQLTKSFHIPPASLQSIPYIILIFVVPLYETFFVPFARKITGHESGISPLQRIGAGL 436

Query: 293 FLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSL 352
           F  TFSM+SAA+MEKKRRD+A+DS K LSIF ITPQFLIFGLSEM TAVGLIEFFYKQSL
Sbjct: 437 FFVTFSMVSAAIMEKKRRDAAVDSNKILSIFWITPQFLIFGLSEMLTAVGLIEFFYKQSL 496

Query: 353 KGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSS-NRGWLSENDLS 400
           KGMQAFLTA+TYCSYSFGFYLSSLLVS VNKVTSSSS N+GWLS+NDL+
Sbjct: 497 KGMQAFLTAITYCSYSFGFYLSSLLVSLVNKVTSSSSTNKGWLSDNDLN 545

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543362|ref|XP_003540130.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max]

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/405 (77%), Positives = 353/405 (87%), Gaps = 11/405 (2%)

Query: 1   MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 60
           M  D E+C EAKGFKA IFFLA+YLVA+GSGCVKPNMIAHGADQF+Q NPKQ KKLS+YF
Sbjct: 151 MFFDGEHCTEAKGFKALIFFLAIYLVALGSGCVKPNMIAHGADQFNQENPKQLKKLSTYF 210

Query: 61  NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 120
           NAAYFAFS GELVALT+LVWVQTHSGMD GFGVSAA M +GL  ++ GTLYYRNK PQGS
Sbjct: 211 NAAYFAFSVGELVALTILVWVQTHSGMDAGFGVSAAVMTMGLISLICGTLYYRNKPPQGS 270

Query: 121 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVED 180
           IF P+AQVFVAA+LKRKQICPSNPQMLHG +Q+NV         T +FRFLDKACI+V+ 
Sbjct: 271 IFIPVAQVFVAAILKRKQICPSNPQMLHG-SQSNVARKH-----TNKFRFLDKACIRVQQ 324

Query: 181 GT-----NKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMN 235
           GT     + KESPW LC+V QVEQ K+L+SV+PIFA TI+FNTILAQLQTFSVQQGS+M+
Sbjct: 325 GTGSSSNDTKESPWILCSVAQVEQAKILLSVIPIFASTIVFNTILAQLQTFSVQQGSSMD 384

Query: 236 NKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLA 295
             LTK+FHVPPASLQSIPYI+L+++VPLYD FFVPFARK TGHESGISPLQRIGFGLFLA
Sbjct: 385 THLTKSFHVPPASLQSIPYILLIVVVPLYDSFFVPFARKITGHESGISPLQRIGFGLFLA 444

Query: 296 TFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM 355
           TFSMISAAL+EKKRRD+A++  +T+SIF ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM
Sbjct: 445 TFSMISAALVEKKRRDAAVNLNETISIFWITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM 504

Query: 356 QAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLS 400
           Q F TA+TYCSYSFGFYLSSLLVS VN ++SSSS  GWL +NDL+
Sbjct: 505 QTFFTAITYCSYSFGFYLSSLLVSMVNNISSSSSTGGWLHDNDLN 549

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465269|ref|XP_002268504.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/400 (78%), Positives = 358/400 (89%), Gaps = 4/400 (1%)

Query: 1   MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 60
           MVTD E C EAKGFKA IF+LALYLVA+GSGCVKPNM+AHGADQF++ +PKQSK LSSYF
Sbjct: 145 MVTDGERCVEAKGFKAFIFYLALYLVALGSGCVKPNMVAHGADQFNRDSPKQSKSLSSYF 204

Query: 61  NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 120
           NAAYFAFS GEL+ALTVLVWVQTHSGMDVGFGVSAAAMA+GL  +VSGTL YRNK PQGS
Sbjct: 205 NAAYFAFSIGELIALTVLVWVQTHSGMDVGFGVSAAAMAMGLISLVSGTLLYRNKPPQGS 264

Query: 121 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVED 180
           I TPIAQVFVAA+LKRKQ CP +P MLHG +QNNV    GSV  T +F+FLDKACIK++D
Sbjct: 265 ILTPIAQVFVAAILKRKQRCPPSPHMLHG-SQNNVL--VGSV-ATSKFKFLDKACIKIQD 320

Query: 181 GTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTK 240
           G N KESPWRLCTV QV+QVK+L+SV+PIFACTI+FNTILAQ+QTFSVQQGS+MN +LTK
Sbjct: 321 GNNVKESPWRLCTVAQVQQVKILLSVIPIFACTIVFNTILAQMQTFSVQQGSSMNTQLTK 380

Query: 241 NFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMI 300
           NFH+PPASLQ+IPYI+L+ LVPLYD FFVPFAR++TG+ SGISPLQRIGFGLF+ATFSM+
Sbjct: 381 NFHIPPASLQAIPYIILIFLVPLYDAFFVPFARRFTGNVSGISPLQRIGFGLFVATFSMV 440

Query: 301 SAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLT 360
           +AA+ME KRR++A++  K LSIF ITPQFLIFGLSEMFTAVGLIEFFYKQS  GMQAFLT
Sbjct: 441 AAAIMEDKRRNAAVNEKKILSIFWITPQFLIFGLSEMFTAVGLIEFFYKQSSTGMQAFLT 500

Query: 361 AMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLS 400
           A+TY SYSFGFY SS+LVS VNK+TSSSS+ GWL ++DL+
Sbjct: 501 AITYFSYSFGFYFSSVLVSLVNKITSSSSSDGWLKDDDLN 540

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493531|ref|XP_002265350.2| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera]

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/408 (76%), Positives = 352/408 (86%), Gaps = 12/408 (2%)

Query: 1   MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 60
           MV D +NC EAKG+KA IFFLALYLVA+GSGC+KPN+I+HGADQF + + KQSKKLSSYF
Sbjct: 123 MVLDEDNCSEAKGYKALIFFLALYLVALGSGCLKPNIISHGADQFRKEDSKQSKKLSSYF 182

Query: 61  NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 120
           NAAYFAF  GELVALTVLVWVQTHSGMDVGFGVSAAAMA+GL  ++SGTL Y NK P+GS
Sbjct: 183 NAAYFAFCMGELVALTVLVWVQTHSGMDVGFGVSAAAMAMGLISLISGTLVYMNKPPRGS 242

Query: 121 IFTPIAQVFVAAMLKRKQICPSNPQMLHG-------LNQNNVPNDSGSVFLTQRFRFLDK 173
           IFTPIAQVFVAA+ KRKQICPSN  MLHG       L  +NV N    +  T++FRFLDK
Sbjct: 243 IFTPIAQVFVAAITKRKQICPSNSGMLHGSQLPEQALASSNVRN----LLHTEKFRFLDK 298

Query: 174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSA 233
           ACIKV+DGT   ESPWRLCTVTQVEQVK++ISVVPIFACTIIFNTILAQLQTFSVQQGSA
Sbjct: 299 ACIKVQDGTQTSESPWRLCTVTQVEQVKIIISVVPIFACTIIFNTILAQLQTFSVQQGSA 358

Query: 234 MNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLF 293
           MN +L K F +PPASLQSIPY+ML+ LVPLY+  FVP ARK TG +SGISPLQRIG GLF
Sbjct: 359 MNTRLIKGFQIPPASLQSIPYLMLIFLVPLYETVFVPIARKITGRDSGISPLQRIGIGLF 418

Query: 294 LATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK 353
           +AT SM+SAAL+EKKRR SALDS + LSIF I PQFLIFGLSEMFTAVGLIEFFYKQS++
Sbjct: 419 VATLSMVSAALVEKKRRTSALDSNRILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSVE 478

Query: 354 GMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSS-SSNRGWLSENDLS 400
           GMQ+FLTAMTYCSYSFGF+LSSLLVS VN++TSS SS+RGWL +NDL+
Sbjct: 479 GMQSFLTAMTYCSYSFGFFLSSLLVSLVNRITSSHSSSRGWLGDNDLN 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832226|emb|CAN63859.1| hypothetical protein VITISV_037742 [Vitis vinifera]

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 311/400 (77%), Positives = 356/400 (89%), Gaps = 7/400 (1%)

Query: 1   MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 60
           MVTD E C EAKGFKA IF+LALYLVA+GSGCVKPNM+AHGADQF++ +PKQSK LSSYF
Sbjct: 171 MVTDGERCVEAKGFKAFIFYLALYLVALGSGCVKPNMVAHGADQFNRDSPKQSKSLSSYF 230

Query: 61  NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 120
           NAAYFAFS GEL+ALTVLVWVQTHSGMDVGFGVSAAAMA+GL  +VSGTL YRNK PQGS
Sbjct: 231 NAAYFAFSIGELIALTVLVWVQTHSGMDVGFGVSAAAMAMGLISLVSGTLLYRNKPPQGS 290

Query: 121 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVED 180
           I TPIAQVFVAA+LKRKQ CP    MLHG +QNNV    GSV  T +F+FLDKACIK++D
Sbjct: 291 ILTPIAQVFVAAILKRKQRCP---HMLHG-SQNNVL--VGSV-ATSKFKFLDKACIKIQD 343

Query: 181 GTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTK 240
           G N KESPWRLCTV QV+QVK+L+SV+PIFACTI+FNTILAQ+QTFSVQQGS+MN +LTK
Sbjct: 344 GNNVKESPWRLCTVAQVQQVKILLSVIPIFACTIVFNTILAQMQTFSVQQGSSMNTQLTK 403

Query: 241 NFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMI 300
           NFH+PPASLQ+IPYI+L+ LVPLYD FFVPFAR++TG+ SGISPLQRIGFGLF+ATFSM+
Sbjct: 404 NFHIPPASLQAIPYIILIFLVPLYDAFFVPFARRFTGNVSGISPLQRIGFGLFVATFSMV 463

Query: 301 SAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLT 360
           +AA+ME KRR++A++  K LSIF ITPQFLIFGLSEMFTAVGLIEFFYKQS  GMQAFLT
Sbjct: 464 AAAIMEDKRRNAAVNEKKILSIFWITPQFLIFGLSEMFTAVGLIEFFYKQSSTGMQAFLT 523

Query: 361 AMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLS 400
           A+TY SYSFGFY SS+LVS VNK+TSSSS+ GWL ++DL+
Sbjct: 524 AITYFSYSFGFYFSSVLVSLVNKITSSSSSDGWLKDDDLN 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840607|ref|XP_002888185.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297334026|gb|EFH64444.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/400 (76%), Positives = 353/400 (88%), Gaps = 7/400 (1%)

Query: 5   SENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY 64
            + CEEAKGFKA IFF+ALYLVA+GSGCVKPNMIAHGADQF QS+PKQSK+LSSYFNAAY
Sbjct: 150 DQACEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAY 209

Query: 65  FAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTP 124
           FAFS GEL+ALT+LVWVQTHSGMDVGFGVSAAAM +GL  +VSGT+Y+RNKRP+ SIFTP
Sbjct: 210 FAFSMGELIALTLLVWVQTHSGMDVGFGVSAAAMTMGLISLVSGTMYFRNKRPRRSIFTP 269

Query: 125 IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPND---SGSVFLTQRFRFLDKACIKVEDG 181
           IAQV VAA+LKRK + PS+P+MLHG   ++V ND   S ++  T RFRFLDKACIK++D 
Sbjct: 270 IAQVVVAAILKRKLVSPSDPRMLHG--DHHVANDVVPSSTLPYTPRFRFLDKACIKIQD- 326

Query: 182 TNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN 241
           TN KESPWRLCTVTQVEQVK LIS+VPIFA TI+FNTILAQLQTFSVQQGS+MNN+L+ +
Sbjct: 327 TNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNNRLSNS 386

Query: 242 FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMIS 301
           FH+PPASLQ+IPY+ML+ LVPLYD F VPFARK TGH SGI PL RIG GLFL+TFSM+S
Sbjct: 387 FHIPPASLQAIPYMMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVS 446

Query: 302 AALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTA 361
           AA++EKKRRDS++  G+ LSIF ITPQFLIFG+SEMFTAVGLIEFFYKQS KGM++FL A
Sbjct: 447 AAMLEKKRRDSSVLDGRILSIFWITPQFLIFGVSEMFTAVGLIEFFYKQSAKGMESFLMA 506

Query: 362 MTYCSYSFGFYLSSLLVSFVNKVTSSS-SNRGWLSENDLS 400
           +TYCSYSFGFY SS+LVS VNK+TS+S  ++GWL ENDL+
Sbjct: 507 LTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLN 546

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127762|ref|XP_002329171.1| predicted protein [Populus trichocarpa] gi|222870952|gb|EEF08083.1| predicted protein [Populus trichocarpa]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 304/406 (74%), Positives = 357/406 (87%), Gaps = 6/406 (1%)

Query: 1   MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 60
           MV+D  +C EAKG+KA IFFLALYLVA+GSGC+KPN+I+HGADQF + +PKQSKKLS+YF
Sbjct: 132 MVSDGVDCVEAKGYKALIFFLALYLVALGSGCLKPNIISHGADQFKKEDPKQSKKLSTYF 191

Query: 61  NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 120
           N AYFAF  GEL+ALTVLVWVQTHSGMDVGFGVSAAAMA+GL  ++SG+  YRNK P+GS
Sbjct: 192 NVAYFAFCIGELIALTVLVWVQTHSGMDVGFGVSAAAMAVGLICLISGSFSYRNKPPKGS 251

Query: 121 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQN---NVP---NDSGSVFLTQRFRFLDKA 174
           IFTP AQVFVAA+ KRKQICPSN QMLHG + N   +VP    D+ ++  T++FRFLDKA
Sbjct: 252 IFTPFAQVFVAAITKRKQICPSNAQMLHGCHNNVSSHVPATSTDASNLLHTEKFRFLDKA 311

Query: 175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAM 234
           CI+V+DG+   ES WRLCTV QVEQVK+LISV+PIF+CTIIFNTILAQLQTFSVQQGSAM
Sbjct: 312 CIRVQDGSEASESTWRLCTVAQVEQVKILISVIPIFSCTIIFNTILAQLQTFSVQQGSAM 371

Query: 235 NNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFL 294
           N ++TK+F +PPASLQSIPYIML+ +VPLY+  FVPFAR+ TG +SGI+PLQR+G GLF+
Sbjct: 372 NTRITKSFKIPPASLQSIPYIMLIFVVPLYETAFVPFARRITGKDSGITPLQRVGVGLFI 431

Query: 295 ATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG 354
           ATFSM+SAA++E+KRR SALD  +TLSIF I PQFLIFGLSEMFTAVGLIEFFYKQSL+G
Sbjct: 432 ATFSMVSAAVIERKRRTSALDYQETLSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEG 491

Query: 355 MQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLS 400
           MQ+FLTAMTYCSYSFGFYLSSLLVS VNK+TSSSS+ GWLS+NDL+
Sbjct: 492 MQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSSSSSGGWLSDNDLN 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218903|ref|NP_176183.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75305727|sp|Q93VV5.1|PTR16_ARATH RecName: Full=Probable peptide/nitrate transporter At1g59740 gi|14334728|gb|AAK59542.1| putative oligopeptide transporter protein [Arabidopsis thaliana] gi|15293215|gb|AAK93718.1| putative oligopeptide transporter protein [Arabidopsis thaliana] gi|332195490|gb|AEE33611.1| putative peptide/nitrate transporter [Arabidopsis thaliana]

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 301/400 (75%), Positives = 350/400 (87%), Gaps = 7/400 (1%)

Query: 5   SENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY 64
            + CEEAKGFKA IFF+ALYLVA+GSGCVKPNMIAHGADQF QS+PKQSK+LSSYFNAAY
Sbjct: 149 DQTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAY 208

Query: 65  FAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTP 124
           FAFS GEL+ALT+LVWVQTHSGMD+GFGVSAAAM +G+  +VSGT+Y+RNKRP+ SIFTP
Sbjct: 209 FAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTP 268

Query: 125 IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPND---SGSVFLTQRFRFLDKACIKVEDG 181
           IA V VAA+LKRK   PS+P+MLHG   ++V ND   S ++  T RFRFLDKACIK++D 
Sbjct: 269 IAHVIVAAILKRKLASPSDPRMLHG--DHHVANDVVPSSTLPHTPRFRFLDKACIKIQD- 325

Query: 182 TNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN 241
           TN KESPWRLCTVTQVEQVK LIS+VPIFA TI+FNTILAQLQTFSVQQGS+MN +L+ +
Sbjct: 326 TNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSNS 385

Query: 242 FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMIS 301
           FH+PPASLQ+IPYIML+ LVPLYD F VPFARK TGH SGI PL RIG GLFL+TFSM+S
Sbjct: 386 FHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVS 445

Query: 302 AALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTA 361
           AA++EKKRRDS++  G+ LSIF ITPQFLIFG+SEMFTAVGLIEFFYKQS KGM++FL A
Sbjct: 446 AAMLEKKRRDSSVLDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMA 505

Query: 362 MTYCSYSFGFYLSSLLVSFVNKVTSSS-SNRGWLSENDLS 400
           +TYCSYSFGFY SS+LVS VNK+TS+S  ++GWL ENDL+
Sbjct: 506 LTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLN 545

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5080808|gb|AAD39317.1|AC007258_6 Similar to nitrate and oligopeptide transporters [Arabidopsis thaliana]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 301/399 (75%), Positives = 350/399 (87%), Gaps = 7/399 (1%)

Query: 6   ENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF 65
           + CEEAKGFKA IFF+ALYLVA+GSGCVKPNMIAHGADQF QS+PKQSK+LSSYFNAAYF
Sbjct: 33  QTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYF 92

Query: 66  AFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPI 125
           AFS GEL+ALT+LVWVQTHSGMD+GFGVSAAAM +G+  +VSGT+Y+RNKRP+ SIFTPI
Sbjct: 93  AFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPI 152

Query: 126 AQVFVAAMLKRKQICPSNPQMLHGLNQNNVPND---SGSVFLTQRFRFLDKACIKVEDGT 182
           A V VAA+LKRK   PS+P+MLHG   ++V ND   S ++  T RFRFLDKACIK++D T
Sbjct: 153 AHVIVAAILKRKLASPSDPRMLHG--DHHVANDVVPSSTLPHTPRFRFLDKACIKIQD-T 209

Query: 183 NKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNF 242
           N KESPWRLCTVTQVEQVK LIS+VPIFA TI+FNTILAQLQTFSVQQGS+MN +L+ +F
Sbjct: 210 NTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSF 269

Query: 243 HVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISA 302
           H+PPASLQ+IPYIML+ LVPLYD F VPFARK TGH SGI PL RIG GLFL+TFSM+SA
Sbjct: 270 HIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSA 329

Query: 303 ALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM 362
           A++EKKRRDS++  G+ LSIF ITPQFLIFG+SEMFTAVGLIEFFYKQS KGM++FL A+
Sbjct: 330 AMLEKKRRDSSVLDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMAL 389

Query: 363 TYCSYSFGFYLSSLLVSFVNKVTSSS-SNRGWLSENDLS 400
           TYCSYSFGFY SS+LVS VNK+TS+S  ++GWL ENDL+
Sbjct: 390 TYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLN 428

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
TAIR|locus:2025886	591	AT1G59740 [Arabidopsis thalian	0.953	0.663	0.719	4.7e-151
TAIR|locus:2006907	601	AT1G33440 [Arabidopsis thalian	0.956	0.653	0.642	3.8e-133
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.946	0.682	0.384	2.1e-70
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.953	0.687	0.358	2.4e-69
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.948	0.661	0.356	1.2e-67
TAIR|locus:2205769	567	AT1G27040 [Arabidopsis thalian	0.958	0.694	0.386	1.5e-67
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.946	0.664	0.365	2.8e-66
TAIR|locus:2089935	590	AT3G21670 [Arabidopsis thalian	0.919	0.640	0.367	4.1e-65
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.939	0.658	0.354	5.2e-65
TAIR|locus:1006230253	555	AT3G54450 [Arabidopsis thalian	0.931	0.690	0.373	1.1e-64

TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)]

 Score = 1474 (523.9 bits), Expect = 4.7e-151, P = 4.7e-151
 Identities = 287/399 (71%), Positives = 335/399 (83%)

Query:     6 ENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF 65
             + CEEAKGFKA IFF+ALYLVA+GSGCVKPNMIAHGADQF QS+PKQSK+LSSYFNAAYF
Sbjct:   150 QTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYF 209

Query:    66 AFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPI 125
             AFS GEL+ALT+LVWVQTHSGMD+GFGVSAAAM +G+  +VSGT+Y+RNKRP+ SIFTPI
Sbjct:   210 AFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPI 269

Query:   126 AQVFVAAMLKRKQICPSNPQMLHGLNQNNVPND---SGSVFLTQRFRFLDKACIKVEDGT 182
             A V VAA+LKRK   PS+P+MLHG   ++V ND   S ++  T RFRFLDKACIK++D T
Sbjct:   270 AHVIVAAILKRKLASPSDPRMLHG--DHHVANDVVPSSTLPHTPRFRFLDKACIKIQD-T 326

Query:   183 NKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNF 242
             N KESPWRLCTVTQVEQVK LIS+VPIFA TI+FNTILAQLQTFSVQQGS+MN +L+ +F
Sbjct:   327 NTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSF 386

Query:   243 HVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISA 302
             H+PPASLQ+IPYIML+ LVPLYD F VPFARK TGH SGI PL RIG GLFL+TFSM+SA
Sbjct:   387 HIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSA 446

Query:   303 ALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM 362
             A++EKKRRDS++  G+ LSIF ITPQFLIFG+SEMFTAVGLIEFFYKQS KGM++FL A+
Sbjct:   447 AMLEKKRRDSSVLDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMAL 506

Query:   363 TXXXXXXXXXXXXXXXXXVNKVTSSS-SNRGWLSENDLS 400
             T                 VNK+TS+S  ++GWL ENDL+
Sbjct:   507 TYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLN 545

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2006907 AT1G33440 [Arabidopsis thaliana (taxid:3702)]

 Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
 Identities = 259/403 (64%), Positives = 314/403 (77%)

Query:     1 MVTDSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYF 60
             M + + +C EA G+KA+  + AL LVA+GSGC+KPN+I+HGA+QF +   K  +KLSS+F
Sbjct:   143 MKSTTIHCVEANGYKAATLYTALCLVALGSGCLKPNIISHGANQFQR---KDLRKLSSFF 199

Query:    61 NAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS 120
             NAAYFAFS G+L+ALT+LVWVQTHSGMDVGFGVSAA MA G+  +V+GT +YRNK P GS
Sbjct:   200 NAAYFAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSFYRNKPPSGS 259

Query:   121 IFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVED 180
             IFTPIAQVFVAA+ KRKQICPSNP M+H  + + V      +  + +FRFLDKACIK + 
Sbjct:   260 IFTPIAQVFVAAITKRKQICPSNPNMVHQPSTDLVRVKP--LLHSNKFRFLDKACIKTQG 317

Query:   181 GTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTK 240
                  ESPWRLCT+ QV QVK+L+SV+PIFACTIIFNTILAQLQTFSVQQGS+MN  +TK
Sbjct:   318 --KAMESPWRLCTIEQVHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHITK 375

Query:   241 NFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMI 300
              F +PPASLQ+IPYI+L+  VPLY+ FFVP ARK TG++SGISPLQRIG GLFLATFSM+
Sbjct:   376 TFQIPPASLQAIPYIILIFFVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFSMV 435

Query:   301 SAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLT 360
             +AAL+EKKRR+S L+    LSIF I PQFLIFGLSEMFTAVGL+EFFYKQS + MQ+FLT
Sbjct:   436 AAALVEKKRRESFLEQNVMLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSSQSMQSFLT 495

Query:   361 AMTXXXXXXXXXXXXXXXXXVNKVTSSSSN---RGWLSENDLS 400
             AMT                 VN+VTSS+ +    GWL +NDL+
Sbjct:   496 AMTYCSYSFGFYLSSVLVSTVNRVTSSNGSGTKEGWLGDNDLN 538

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 155/403 (38%), Positives = 238/403 (59%)

Query:     6 ENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF 65
             E C    G + +I F+ALYL+A+G+G +KP + + GADQFD ++ K+ +  SS+FN  YF
Sbjct:   130 ETCHATAG-QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYF 188

Query:    66 AFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPI 125
               + G ++A +VLVW+Q + G   G GV   AMA+ +    +G+ +YR ++P GS  T +
Sbjct:   189 VINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRM 248

Query:   126 AQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFL--TQRFRFLDKACIKVEDGTN 183
              QV VA+  K K   P +  +L+  NQ+   +  GS  L  T+   F DKA ++ E   N
Sbjct:   249 LQVIVASCRKSKVKIPEDESLLYE-NQDAESSIIGSRKLEHTKILTFFDKAAVETESD-N 306

Query:   184 K---KESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTK 240
             K   K S W+LCTVTQVE++K LI ++PI+A  I+F ++ +Q+ T  V QG+ ++  +  
Sbjct:   307 KGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGP 366

Query:   241 NFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMI 300
             NF +P ASL     + ++   P+YDK  VPFARKYTGHE G + LQRIG GL ++ FSM+
Sbjct:   367 NFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMV 426

Query:   301 SAALMEKKRRDSA----LDSGKTL--SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG 354
             SA ++E  R +      L + +T+  +IF   PQ+ + G +E+FT +G +EFFY Q+   
Sbjct:   427 SAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDA 486

Query:   355 MQAFLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSEN 397
             M++  +A++                 V KVT S    GW+++N
Sbjct:   487 MRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKN 529

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 145/404 (35%), Positives = 240/404 (59%)

Query:     4 DSENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA 63
             +++ C      + ++FF+ALY++A+G+G +KP + + GADQFD+++  +  K SS+FN  
Sbjct:   128 NADTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWF 186

Query:    64 YFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFT 123
             YF+ + G L+A TVLVW+Q + G   GFGV   AM + +     G+ +YR +RP GS  T
Sbjct:   187 YFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLT 246

Query:   124 PIAQVFVAAMLKRKQICPSNPQMLHGL--NQNNVPNDSGSVFLTQRFRFLDKACIKVEDG 181
              I QV VAA  K     P +  +L     +++N+   S  +  T   +F DKA ++ +  
Sbjct:   247 RIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKG-SRKLVHTDNLKFFDKAAVESQSD 305

Query:   182 TNK--KESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLT 239
             + K  + +PWRLC+VTQVE++K +I+++P++A  I+F T+ +Q+ T  V QG+ M+  + 
Sbjct:   306 SIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMG 365

Query:   240 KNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSM 299
             KNF +P ASL     + ++   P+YD+F +P ARK+T +E G + LQR+G GL ++ F+M
Sbjct:   366 KNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAM 425

Query:   300 ISAALMEKKRRD-----SALDSGKT-LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK 353
             I+A ++E  R D     +A D  +  +SIF   PQ+L+ G +E+FT +G +EFFY Q+  
Sbjct:   426 ITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPD 485

Query:   354 GMQAFLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSEN 397
              M++  +A++                 V K+T  +   GW+ +N
Sbjct:   486 AMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDN 529

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 141/396 (35%), Positives = 233/396 (58%)

Query:     8 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAF 67
             C  A   + ++FF  LYL+A+G+G +KP + + GADQFD ++P++  + +S+FN  YF+ 
Sbjct:   163 CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSI 222

Query:    68 STGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQ 127
             + G  ++ T+LVWVQ + G  +GF +    M + +     GT  YR ++P GS  T + Q
Sbjct:   223 NIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQ 282

Query:   128 VFVAAMLKRKQICPSNPQMLHGLNQ-NNVPNDSGSVFLTQRFRFLDKACI--KVEDGTNK 184
             V VAA  K K   P +   L+   + N++   S  +  T  ++FLDKA +  + E  +  
Sbjct:   283 VLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGA 342

Query:   185 KESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV 244
               +PW+LCTVTQVE+VK LI + PI+A  I+++ + +Q+ T  VQQG +MN ++ ++F +
Sbjct:   343 FSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMN-RIIRSFEI 401

Query:   245 PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAAL 304
             PPAS      ++++I +P+YD+F VPF R++TG   G++ LQR+G GLFL+  S+ +AA+
Sbjct:   402 PPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAI 461

Query:   305 MEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTX 364
             +E  R   A D    +SIF   PQ+++ G++E+F  +G +EFFY +S   M++  +A+  
Sbjct:   462 VETVRLQLAQDF-VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALAL 520

Query:   365 XXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSENDLS 400
                             V   T+     GW+ + DL+
Sbjct:   521 LNTAVGSYLSSLILTLVAYFTALGGKDGWVPD-DLN 555

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 160/414 (38%), Positives = 232/414 (56%)

Query:     8 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAF 67
             CE   G KA+  F+ LYLV++G G +K ++ +HGA+QFD+  PK  K+ S++FN   F  
Sbjct:   138 CEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCL 197

Query:    68 STGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQ 127
             S G LVA+T +VW++ + G + GFGVS  ++ L +   + G+ +Y+NK P+GS  T I +
Sbjct:   198 SCGALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFK 257

Query:   128 VFVAAMLKRKQICPSNPQMLHGLN---QNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNK 184
             V +AA +     C S     H  +   Q+     + S  LT     L+KA   +E    K
Sbjct:   258 VLLAASIVS---CSSKTSSNHFTSREVQSEHEEKTPSQSLTNSLTCLNKA---IE---GK 308

Query:   185 KESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV 244
                 W  CTV QVE VK+++ ++PIF CTI+ N  LAQL T+SV Q + MN K+  NF+V
Sbjct:   309 THHIWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKIV-NFNV 367

Query:   245 PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAAL 304
             P ASL   P + ++IL P YD   +PFARK T  E GI+ LQRIG GL L+  +M  AAL
Sbjct:   368 PSASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVLSIVAMAVAAL 427

Query:   305 MEKKRRDSA-----LDSGKTLSI-FS-ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQA 357
             +E KR+  A     LDS +TL I F  I  Q+L  G +++FT  GL+EFF+ ++   M++
Sbjct:   428 VELKRKQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRS 487

Query:   358 FLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSENDLSTKTGLIFSTGC 411
               T+++                 VN+VT S+    WL E     +  L +   C
Sbjct:   488 LATSLSWASLALGYYLSSVMVPIVNRVTKSAGQSPWLGEKLNRNRLDLFYWLMC 541

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 146/400 (36%), Positives = 231/400 (57%)

Query:     8 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAF 67
             C  A   + ++FF  LYL+A+G+G +KP + + GADQFD ++ ++  + +S+FN  YF+ 
Sbjct:   149 CPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSI 208

Query:    68 STGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQ 127
             + G LV+ ++LVW+Q + G  +GFG+    M L +     GT  YR ++P GS  T I+Q
Sbjct:   209 NIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQ 268

Query:   128 VFVAAMLKRKQICPSNPQMLHGL-NQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKE 186
             V VA+  K     P +  +L+   ++N+    S  +  T   ++LDKA +  E+ +   +
Sbjct:   269 VVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGD 328

Query:   187 --SPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV 244
               + WRLCTVTQVE++K+LI + PI+A  IIF+ + AQ+ T  VQQG AMN K+  +F +
Sbjct:   329 YSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIG-SFQL 387

Query:   245 PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAAL 304
             PPA+L +     ++I VPLYD+F VP ARK+TG + G + +QR+G GLF++   M +AA+
Sbjct:   388 PPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAI 447

Query:   305 MEKKRRDSALDSGKT-------LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQA 357
             +E  R   A D G         +S+    PQ+ I G +E+F  +G +EFFY QS   M++
Sbjct:   448 VEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRS 507

Query:   358 FLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSEN 397
               +A+                  V   T+ +   GW+S+N
Sbjct:   508 LCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDN 547

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2089935 AT3G21670 [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 145/395 (36%), Positives = 230/395 (58%)

Query:     8 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAF 67
             C EA G + ++ ++ALY +A+G G +K N+   G+DQFD S+PK+ K++  +FN  YF+ 
Sbjct:   142 CIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFFFNRFYFSI 201

Query:    68 STGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQ 127
             S G L A+  LV+VQ + G   G+G+SAA M +    ++ GT  YR K+P+GS FT I +
Sbjct:   202 SVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKGSPFTTIWR 261

Query:   128 VFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACI-KVEDGTNKKE 186
             V   A  KRK+  P++P +L+G +   VP+       T+  + LDKA I K E   + K+
Sbjct:   262 VGFLAWKKRKESYPAHPSLLNGYDNTTVPH-------TEMLKCLDKAAISKNESSPSSKD 314

Query:   187 ----SPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNF 242
                  PW + TVTQVE+VK+++ +VPI+A  I+F TI +Q+ TF+V+Q + M+ KL  +F
Sbjct:   315 FEEKDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATFMDRKLG-SF 373

Query:   243 HVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISA 302
              VP  S  +   + +++   L ++ FVP  R+ T    GI+ LQRIG GL  +  +M  A
Sbjct:   374 TVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVFSMAAMAVA 433

Query:   303 ALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM 362
             A++E  RR++A+++ K +S F + PQ+ + G  E F  VG +EFF +++ + M++  T +
Sbjct:   434 AVIENARREAAVNNDKKISAFWLVPQYFLVGAGEAFAYVGQLEFFIREAPERMKSMSTGL 493

Query:   363 TXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSEN 397
                               V++VT  S    WL  N
Sbjct:   494 FLSTISMGFFVSSLLVSLVDRVTDKS----WLRSN 524

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 142/401 (35%), Positives = 227/401 (56%)

Query:     6 ENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF 65
             ENCE+A   + ++FF ALY +AIG+G  KPN+   GADQFD+ +PK      S+FN   F
Sbjct:   136 ENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMF 195

Query:    66 AFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPI 125
             +   G   A TVLV+VQ + G  +G+G+S   +A  +F  + GT  YR+K P GS FT +
Sbjct:   196 SIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKM 255

Query:   126 AQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSG-SVFLTQRFRFLDKACIKVEDGTNK 184
             A+V VA++ K ++   S+    + L      +     +  T   RFL++A +K   G+  
Sbjct:   256 ARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNRASLKT--GSTH 313

Query:   185 KESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV 244
             K   WRLCT+T+VE+ K ++ ++P+   T + + +LAQ+ T  ++QG+ ++ +LT NF +
Sbjct:   314 K---WRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNNFSI 370

Query:   245 PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAAL 304
             PPASL       +++ + +YD+ FV F RK TG+  GI+ LQR+G G+ L    MI A++
Sbjct:   371 PPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILIMIIASI 430

Query:   305 MEKKRRDSALDSGKT--------LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQ 356
              E+ R   A + G T        LSIF++ PQ+++ GL++ F  +  +EFFY Q+ + M+
Sbjct:   431 TERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQAPESMK 490

Query:   357 AFLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSEN 397
             +  T+ T                 V+++T     RGW+  N
Sbjct:   491 SLGTSYTSTSMAVGYFMSSILLSSVSQITKKQG-RGWIQNN 530

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 151/404 (37%), Positives = 234/404 (57%)

Query:    11 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTG 70
             A+  +  +FF+ALY++A+G G  KP ++   ADQF ++N ++    +S+FN  Y A    
Sbjct:   109 ARRMREKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLA 168

Query:    71 ELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFV 130
               +A+  L+++Q      +GF + A ++ + +   + G   YR + P GS FT +AQV V
Sbjct:   169 SSIAVLALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMV 228

Query:   131 AAMLKRKQICPSNPQMLHGL-----NQNNVPN-DSGSVFL---TQRFRFLDKACIKVEDG 181
             AA LK+ ++  S+ +  +GL     +++ + + +S  V+L   T +FRFLDKA I  E  
Sbjct:   229 AA-LKKWRL--SSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEID 285

Query:   182 TNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN 241
              NK  +PWRLCTV QVE+VK+++ ++PI+   I+F   L QL TF ++QGS M+  +  +
Sbjct:   286 HNKNRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNH 345

Query:   242 FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMIS 301
             F +PPA+ QSI  + ++IL+PLYD+ FVP  RK T H SGI+ LQRIG GLF+ATF+M+ 
Sbjct:   346 FTIPPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVI 405

Query:   302 AALMEKKR----RDSAL-DSGKT---LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK 353
               L+E KR    RD  L DS K    +S   + PQ+++ G+ ++FT VG+ E FY Q  +
Sbjct:   406 CGLVEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPE 465

Query:   354 GMQAFLTAMTXXXXXXXXXXXXXXXXXVNKVTSSSSNRGWLSEN 397
              M++   A+                  V  + S S    WL  N
Sbjct:   466 TMRSIGAAIFISVVGVGSFVSTGIISTVQTI-SKSHGEEWLVNN 508

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93VV5	PTR16_ARATH	No assigned EC number	0.7525	0.9562	0.6649	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01500015 hypothetical protein (614 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	411
pfam00854	372	pfam00854, PTR2, POT family	5e-59
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	3e-21
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	6e-14
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	1e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  196 bits (500), Expect = 5e-59
 Identities = 100/363 (27%), Positives = 164/363 (45%), Gaps = 31/363 (8%)

Query: 11  AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTG 70
               + ++F++ LYL+A+G+G +KPN+ A GADQFD     Q  +   +F+  YF+ + G
Sbjct: 27  LSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQFD---ETQDPRRDGFFSWFYFSINAG 83

Query: 71  ELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSI--FTPIAQV 128
            L+A  +  ++Q + G  +GFG+ A  M L L   + G+  Y+ K P G       IA +
Sbjct: 84  SLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFI 143

Query: 129 FVAAMLKRKQICPSNPQML-HGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKES 187
             AA   RK   P +   L   L + N  + S +   T R   +     K          
Sbjct: 144 ITAAGKNRKLQLPKDSHWLYWALEKYNKRSISQTKVHT-RVAVIFIPLPKFWA------- 195

Query: 188 PWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPA 247
                    V  ++ ++ ++PI+A  I+ + +  QL T  V+Q   M+  +   F +PPA
Sbjct: 196 --LFDQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPA 253

Query: 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEK 307
           S QS   + ++IL+P+ D    P  R     + G++  QR G G+F+   +   AA++E 
Sbjct: 254 SFQSFNPLAVLILLPILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEA 309

Query: 308 KRRDSALDSGKT-------LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLT 360
           KR   A   G T       L I    P+  I G+       G +EF        M +  T
Sbjct: 310 KRPRYAAALGLTSPGWTVPLFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWT 365

Query: 361 AMT 363
            ++
Sbjct: 366 LLS 368

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 95.0 bits (237), Expect = 3e-21
 Identities = 65/375 (17%), Positives = 134/375 (35%), Gaps = 41/375 (10%)

Query: 13  GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGEL 72
                  ++ L L+ +G+G  KPN+ +   + + + +P++    + +    Y   + G L
Sbjct: 114 VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLF----YMGINIGSL 169

Query: 73  VALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKR----PQGSIFTPIAQV 128
           +A  +   +  + G  VGFG++A  M +GL   + G  + +       P    F  +  V
Sbjct: 170 IAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPV 229

Query: 129 FVA--AMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKE 186
                 M+    +          LNQN                 L    I +      + 
Sbjct: 230 LGGLVVMILAALLTLL-------LNQNTFSG------------VLLVISILIAIIYFAEA 270

Query: 187 SPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPP 246
                      ++ + L++ +P+F   +IF  +  Q+ +          N+    F VPP
Sbjct: 271 FRSPKVF----DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPP 326

Query: 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALME 306
           A  QS+    +++  P+    +    R          P   I F L L    +    L+ 
Sbjct: 327 AWFQSLNPFFIILFSPILAALWTKLGRGN------KQPSTPIKFALGLILAGLGFLILLL 380

Query: 307 KKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCS 366
                    SG   S++ +   +++    E+F +   +    K +   +++F+ AM + +
Sbjct: 381 AGIW-FGGPSGLV-SVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLT 438

Query: 367 YSFGFYLSSLLVSFV 381
            + G  L   +    
Sbjct: 439 VAAGQTLGGQVAGLT 453

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 73.3 bits (180), Expect = 6e-14
 Identities = 67/296 (22%), Positives = 119/296 (40%), Gaps = 49/296 (16%)

Query: 20  FLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL- 78
            + L L+A+G+G +KP      A   DQ   +Q      +F+  YFA + G L +  +  
Sbjct: 89  LVGLALIALGTGGIKP---CVSAFGGDQFEERQLSLRFRFFSFFYFAINAGSLFSTIITP 145

Query: 79  ---VWVQTHSGMD---VGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAA 132
                V      D   + FGV    M L L     G+  Y+ K P G+I + + +  V A
Sbjct: 146 ILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFA 205

Query: 133 MLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLC 192
           + KR +    +   LH                     +LD A           +   R+ 
Sbjct: 206 LKKRFRTRSEDWPRLH---------------------WLDWA---------APKYLIRM- 234

Query: 193 TVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSI 252
               +   K L+ V+ +F    +F  +  Q  +    Q + M+      F + P  +Q++
Sbjct: 235 ----IRSTKRLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGD-VGLFPIQPDQMQAV 289

Query: 253 PYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKK 308
             ++++ILVP++D    P   K     +  + L+++  G+ LA  +   AAL++ K
Sbjct: 290 NPLLVLILVPIFDYVVYPALAKC---GTRFTSLRKMAVGMLLAALAFAVAALLQNK 342

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 72/384 (18%), Positives = 137/384 (35%), Gaps = 71/384 (18%)

Query: 19  FFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL 78
            F  L  +A+GSG  K N  +     +++ +     +    F   Y + + G  ++  + 
Sbjct: 105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGD---MPRRDGGFTLFYMSINIGSFISPLLA 161

Query: 79  VWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTP-------------- 124
             +  + G  VGF ++A  M +GL    +G       R  GS+  P              
Sbjct: 162 GVIAENYGYHVGFNLAAVGMVIGLLTFFAGR---HMLRDIGSVPDPLSGQGKTYGKLLLA 218

Query: 125 ----IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVED 180
               +A VF  A L           M H +  N +     +V L     F   A     D
Sbjct: 219 LLAALALVFFCAWL-----------MHHVVIANILLM---TVTLAVIIFFFRLAFKPRLD 264

Query: 181 GTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQT-FSVQQGSAMNNKLT 239
              + +                + + + +F   ++F  + AQ+ T  +    + M++++ 
Sbjct: 265 AVARNK----------------MYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML 308

Query: 240 KNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGF--GLFLATF 297
               VP    QS+    +V+  P+    +    RK      G  P   + F  G+     
Sbjct: 309 -GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK------GKDPTTPLKFTLGMLFCGA 361

Query: 298 SMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSE-MFTAVGLIEFFYKQSLKGMQ 356
           S ++ A           D+G   S + +   +L   L E M + +GL  ++ K + + + 
Sbjct: 362 SFLTFA-----ASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGL-SWWTKIAPQRLM 415

Query: 357 AFLTAMTYCSYSFGFYLSSLLVSF 380
             +  M + + + G  L   L +F
Sbjct: 416 GQMLGMWFLAQAMGSLLGGYLATF 439

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	411
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	99.58
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.57
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.55
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.52
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.47
PRK03545	390	putative arabinose transporter; Provisional	99.46
TIGR00893	399	2A0114 d-galactonate transporter.	99.44
PRK10504	471	putative transporter; Provisional	99.44
PRK10489	417	enterobactin exporter EntS; Provisional	99.41
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.4
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.39
PRK12382	392	putative transporter; Provisional	99.39
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.39
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.38
PRK05122	399	major facilitator superfamily transporter; Provisi	99.38
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.36
TIGR00895	398	2A0115 benzoate transport.	99.35
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.35
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.33
PRK09874	408	drug efflux system protein MdtG; Provisional	99.33
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.33
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.3
TIGR00901	356	2A0125 AmpG-related permease.	99.3
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.28
PRK10054	395	putative transporter; Provisional	99.27
TIGR00891	405	2A0112 putative sialic acid transporter.	99.27
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.26
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.24
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.23
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.23
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.22
PRK12307	426	putative sialic acid transporter; Provisional	99.21
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.21
PRK15011	393	sugar efflux transporter B; Provisional	99.21
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.18
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.17
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.16
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.15
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.15
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.13
PRK11663	434	regulatory protein UhpC; Provisional	99.12
PRK11043	401	putative transporter; Provisional	99.12
PRK10642	490	proline/glycine betaine transporter; Provisional	99.12
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.12
TIGR00898	505	2A0119 cation transport protein.	99.11
PRK09705	393	cynX putative cyanate transporter; Provisional	99.11
PRK10091	382	MFS transport protein AraJ; Provisional	99.1
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.09
KOG2532	466	consensus Permease of the major facilitator superf	99.09
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.09
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.08
PRK09952	438	shikimate transporter; Provisional	99.08
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.08
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.07
PRK03699	394	putative transporter; Provisional	99.05
PRK11010	491	ampG muropeptide transporter; Validated	99.05
PRK03633	381	putative MFS family transporter protein; Provision	99.05
PRK15075	434	citrate-proton symporter; Provisional	99.04
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.03
PRK03893	496	putative sialic acid transporter; Provisional	99.03
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.02
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.02
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.99
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.98
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.97
PRK09528	420	lacY galactoside permease; Reviewed	98.95
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.94
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.91
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.9
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.9
PRK11902	402	ampG muropeptide transporter; Reviewed	98.88
PRK09848	448	glucuronide transporter; Provisional	98.87
PF13347	428	MFS_2: MFS/sugar transport protein	98.86
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.85
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.81
PRK10133	438	L-fucose transporter; Provisional	98.79
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.79
PRK09669	444	putative symporter YagG; Provisional	98.79
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.76
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.75
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.73
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.7
PRK10429	473	melibiose:sodium symporter; Provisional	98.65
PLN00028	476	nitrate transmembrane transporter; Provisional	98.64
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.63
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.61
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.57
TIGR00805	633	oat sodium-independent organic anion transporter.	98.45
KOG2615	451	consensus Permease of the major facilitator superf	98.44
PRK11462	460	putative transporter; Provisional	98.4
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.35
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.13
TIGR00891	405	2A0112 putative sialic acid transporter.	98.05
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.01
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.01
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.99
PRK03545	390	putative arabinose transporter; Provisional	97.98
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.98
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.96
KOG2533	495	consensus Permease of the major facilitator superf	97.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.96
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.93
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.93
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.92
PRK10054	395	putative transporter; Provisional	97.92
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.89
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.89
PRK03633	381	putative MFS family transporter protein; Provision	97.88
PRK12307	426	putative sialic acid transporter; Provisional	97.88
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.86
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.86
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.86
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.85
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.83
PRK05122	399	major facilitator superfamily transporter; Provisi	97.82
PRK11663	434	regulatory protein UhpC; Provisional	97.82
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.81
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.78
TIGR00893	399	2A0114 d-galactonate transporter.	97.77
TIGR00895	398	2A0115 benzoate transport.	97.73
TIGR00900	365	2A0121 H+ Antiporter protein.	97.73
PRK10091	382	MFS transport protein AraJ; Provisional	97.71
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.7
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.7
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.68
PRK10133	438	L-fucose transporter; Provisional	97.68
PRK10504	471	putative transporter; Provisional	97.68
COG2211	467	MelB Na+/melibiose symporter and related transport	97.67
PRK09874	408	drug efflux system protein MdtG; Provisional	97.66
PRK03893	496	putative sialic acid transporter; Provisional	97.62
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.62
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.6
KOG0569	485	consensus Permease of the major facilitator superf	97.6
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.59
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.58
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.57
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.55
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.54
PRK12382	392	putative transporter; Provisional	97.53
PRK03699	394	putative transporter; Provisional	97.5
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.49
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.48
PRK09705	393	cynX putative cyanate transporter; Provisional	97.47
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.42
KOG0254	513	consensus Predicted transporter (major facilitator	97.39
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.38
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.38
PRK10489	417	enterobactin exporter EntS; Provisional	97.36
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.36
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.36
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.35
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.34
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.33
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.32
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.28
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.26
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.25
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.2
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.2
TIGR00898	505	2A0119 cation transport protein.	97.19
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.17
PRK11043	401	putative transporter; Provisional	97.16
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.15
KOG2533	495	consensus Permease of the major facilitator superf	97.15
PRK10642	490	proline/glycine betaine transporter; Provisional	97.14
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.14
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.11
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.11
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.08
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.03
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.01
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.0
TIGR00805	633	oat sodium-independent organic anion transporter.	96.98
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.9
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.89
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.88
PLN00028	476	nitrate transmembrane transporter; Provisional	96.86
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	96.83
KOG0254	513	consensus Predicted transporter (major facilitator	96.79
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.79
PRK11902	402	ampG muropeptide transporter; Reviewed	96.79
KOG3626	735	consensus Organic anion transporter [Secondary met	96.78
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.78
PTZ00207	591	hypothetical protein; Provisional	96.77
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.69
PRK11010	491	ampG muropeptide transporter; Validated	96.68
KOG2615	451	consensus Permease of the major facilitator superf	96.68
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.58
PRK15011	393	sugar efflux transporter B; Provisional	96.57
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.56
PRK15075	434	citrate-proton symporter; Provisional	96.52
PRK09952	438	shikimate transporter; Provisional	96.5
TIGR00901	356	2A0125 AmpG-related permease.	96.44
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.38
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.38
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.27
PRK09528	420	lacY galactoside permease; Reviewed	96.17
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.03
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	95.94
PRK15462	493	dipeptide/tripeptide permease D; Provisional	95.91
KOG2532	466	consensus Permease of the major facilitator superf	95.82
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	95.76
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	95.71
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.64
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	95.42
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	95.25
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	95.25
KOG3762	618	consensus Predicted transporter [General function	95.11
PRK09669	444	putative symporter YagG; Provisional	95.04
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	94.97
KOG0569	485	consensus Permease of the major facilitator superf	94.74
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	94.22
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.09
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	93.65
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	93.61
PRK11462	460	putative transporter; Provisional	93.56
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	93.15
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	93.11
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.85
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	92.72
PRK10429	473	melibiose:sodium symporter; Provisional	92.47
PRK09848	448	glucuronide transporter; Provisional	91.69
PTZ00207	591	hypothetical protein; Provisional	91.63
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	91.21
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	91.16
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	90.39
KOG0637	498	consensus Sucrose transporter and related proteins	90.37
TIGR00788	468	fbt folate/biopterin transporter. The only functio	89.85
KOG2563	480	consensus Permease of the major facilitator superf	89.72
PF13347	428	MFS_2: MFS/sugar transport protein	89.44
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	88.84
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	88.61
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	88.31
COG0477	338	ProP Permeases of the major facilitator superfamil	87.4
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	86.83
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	84.66
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	84.33
COG0477	338	ProP Permeases of the major facilitator superfamil	83.79
COG2270	438	Permeases of the major facilitator superfamily [Ge	82.67
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	81.94

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=9.6e-54  Score=438.97  Aligned_cols=394  Identities=42%  Similarity=0.706  Sum_probs=351.7

Q ss_pred             CCCcccccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc
Q 015223            5 SENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH   84 (411)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~   84 (411)
                      ++.|++|+..+...++.++.++++|.|+.|||..++++|||++.++++++.+.++|+|+|+..|+|.+++-++..|++++
T Consensus       141 ~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~  220 (571)
T KOG1237|consen  141 GNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN  220 (571)
T ss_pred             CCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence            34689999999999999999999999999999999999999987777776678999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCcccc
Q 015223           85 SGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFL  164 (411)
Q Consensus        85 ~g~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (411)
                      .||.++|.++.+.|++++++|+.+.+.|++++|.++|+..+.+|++.+.++++...+.+.....+...     +.....+
T Consensus       221 ~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~~~~~~-----~~~~~~~  295 (571)
T KOG1237|consen  221 VGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEELYYDCT-----DSVAIEG  295 (571)
T ss_pred             ccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchhcccccc-----ccccccC
Confidence            99999999999999999999999999999888999999999999999999998877665332211110     1122345


Q ss_pred             ccchhhhhhhhhhhccC--CCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCC-
Q 015223          165 TQRFRFLDKACIKVEDG--TNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN-  241 (411)
Q Consensus       165 ~~~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g-  241 (411)
                      ++..+++|++++....+  .+...++|++|+.++|||.|.+++++|++...++||.++.|+.+.+++|+.+||++++ + 
T Consensus       296 t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~-~~  374 (571)
T KOG1237|consen  296 TKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLG-SN  374 (571)
T ss_pred             CcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCC-CC
Confidence            66788999988754210  1134567999999999999999999999999999999999999999999999999998 6 


Q ss_pred             eeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhccc---CCC
Q 015223          242 FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALD---SGK  318 (411)
Q Consensus       242 ~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~---~~~  318 (411)
                      +++|+++++.++.+.+++..|++++...|+.+|.+++|+++++++|+++|+++..++|..++.+|..|++.+.+   ...
T Consensus       375 f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~  454 (571)
T KOG1237|consen  375 FKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETN  454 (571)
T ss_pred             eEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCC
Confidence            99999999999999999999999999999999998888889999999999999999999999999999987653   113


Q ss_pred             ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccccCCCCCCCCC-CC
Q 015223          319 TLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLS-EN  397 (411)
Q Consensus       319 ~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s~~~~~~~w~~-~~  397 (411)
                      ++|++|++|||+|+|+||+|.+++.+||.++++|++||+.++++|+++.++|++++.+++.++...|..  ..+|++ ||
T Consensus       455 ~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~  532 (571)
T KOG1237|consen  455 PMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFAN  532 (571)
T ss_pred             CeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhH
Confidence            799999999999999999999999999999999999999999999999999999999999999887743  568999 77


Q ss_pred             cCCccccccc
Q 015223          398 DLSTKTGLIF  407 (411)
Q Consensus       398 ~~~~~~~~~~  407 (411)
                       ||++|+..|
T Consensus       533 -ln~~~ld~F  541 (571)
T KOG1237|consen  533 -LNKGRLDYF  541 (571)
T ss_pred             -hhhhHHHHH
Confidence             999999876

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=5.9e-45  Score=357.89  Aligned_cols=325  Identities=19%  Similarity=0.331  Sum_probs=256.7

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .....++++++++++|+|++|||++++++|+|+++|+|    ||.+|+++|+++|+|++++|.+++++++++||+.+|.+
T Consensus       115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~  190 (498)
T COG3104         115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL  190 (498)
T ss_pred             ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            56789999999999999999999999999999999987    89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccceeccC--CCCCcchh------HHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccc
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKR--PQGSIFTP------IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLT  165 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~--p~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (411)
                      +++.|.+++++++.+++++.+..  |+.+|++.      ..+++.......          ++.            +...
T Consensus       191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------------~l~~  248 (498)
T COG3104         191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL----------LTL------------LLNQ  248 (498)
T ss_pred             HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH----------HHH------------HHHH
Confidence            99999999999999999886542  33333211      111111111100          000            0000


Q ss_pred             cchhhhh-----hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHH-HHhhcccCC
Q 015223          166 QRFRFLD-----KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQ-GSAMNNKLT  239 (411)
Q Consensus       166 ~~~~~l~-----~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~-~~~~~~~~g  239 (411)
                      +..++.-     ...+.+..      ..++. .+++ +||||+++++++|+..++||++|+|++|.+..+ .++.|++..
T Consensus       249 ~~~~~~~~~~~i~~~~~~~~------~~~~~-~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~  320 (498)
T COG3104         249 NTFSGVLLVISILIAIIYFA------EAFRS-PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF  320 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHH------HHhcc-CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc
Confidence            0000000     00111100      00111 1233 789999999999999999999999999877544 477788755


Q ss_pred             CCeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 015223          240 KNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKT  319 (411)
Q Consensus       240 ~g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~  319 (411)
                       |+++|++|+|++||+.+++++|++.++|+|+.+++ ++   ++++.|+++|+++++++++++........+   ..+ .
T Consensus       321 -g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~~~---~~~-~  391 (498)
T COG3104         321 -GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWFGG---PSG-L  391 (498)
T ss_pred             -ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhhcC---CCC-C
Confidence             69999999999999999999999999999988765 33   699999999999999999999988643321   112 5


Q ss_pred             cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          320 LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       320 ~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      .|++|++++|+++++||++++|..++++++.+|+++++.+||+|.++.+.|+.+++.+..+.
T Consensus       392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~  453 (498)
T COG3104         392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLT  453 (498)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccc
Confidence            89999999999999999999999999999999999999999999999999999999998853

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=1.4e-37  Score=315.11  Aligned_cols=333  Identities=17%  Similarity=0.217  Sum_probs=246.1

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHH
Q 015223           17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAA   96 (411)
Q Consensus        17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~   96 (411)
                      ..+++++.++.+|.|.++|+.+++++|+|+++|++    |+++|+++|+.+|+|++++|.++|++.+++||+++|+++++
T Consensus       101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462        101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence            34667788888999999999999999999987654    89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccceeccC-CCCCcchh--HHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhh-hh
Q 015223           97 AMALGLFGVVSGTLYYRNKR-PQGSIFTP--IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRF-LD  172 (411)
Q Consensus        97 ~~~l~~i~~~~~~~~~~~~~-p~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~  172 (411)
                      .+++++++++.++|.+.+.. .+++|.++  ................+   .....           .+. .+.... +.
T Consensus       177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~~~-~~~~~~~~~  241 (493)
T PRK15462        177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATP---ALITV-----------LFW-KEWSVYALI  241 (493)
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHH---HHHHH-----------HHH-HHHHHHHHH
Confidence            99999999988887764421 11222211  10000000000000000   00000           000 000000 00


Q ss_pred             hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHH-HHHHHhhcccCCCCeeeCCccccc
Q 015223          173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFS-VQQGSAMNNKLTKNFHVPPASLQS  251 (411)
Q Consensus       173 ~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~-~~~~~~~~~~~g~g~~i~~~~l~~  251 (411)
                      ....... .  +.....+ .. .+.+||||+..++++++..++||+.|+|+++.+ ++..+++|++++ |+++|++|+|+
T Consensus       242 ~~~~~~~-~--~~~~~~~-~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qs  315 (493)
T PRK15462        242 VATIIGL-G--VLAKIYR-KA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQS  315 (493)
T ss_pred             HHHHHHH-H--HHHHHHH-hc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHh
Confidence            0000000 0  0000001 01 223679999999999999999999999998855 566688999998 99999999999


Q ss_pred             hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHH
Q 015223          252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI  331 (411)
Q Consensus       252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l  331 (411)
                      +||+.+++++|++.++|.++.||+ +   +++.++|+++|+++.++|++++.+....    ..+++ .+|++|++..|++
T Consensus       316 lNp~~ii~l~P~~a~lw~~l~~~~-~---~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~~-~~s~~wl~~~~~~  386 (493)
T PRK15462        316 INAFAVMLCGVFLAWVVKESVAGN-R---TVRIWGKFALGLGLMSAGFCILTLSARW----SAMYG-HSSLPLMVLGLAV  386 (493)
T ss_pred             HhHHHHHHHHHHHHHHHHHHhcCC-C---CCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCC-CcCHHHHHHHHHH
Confidence            999999999999999998886543 2   2589999999999999999999876532    12223 5899999999999


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHH-hHHHHHHhHhhhhhcc
Q 015223          332 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSY-SFGFYLSSLLVSFVNK  383 (411)
Q Consensus       332 ~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~-~~G~~lg~~l~~~~~~  383 (411)
                      +++||++.+|..+++++|.+|++++|++||.|++.. ++|+.+++.+.+.+..
T Consensus       387 ~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~  439 (493)
T PRK15462        387 MGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQ  439 (493)
T ss_pred             HHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999955 8999999999998854

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=100.00  E-value=1.1e-38  Score=316.05  Aligned_cols=340  Identities=29%  Similarity=0.476  Sum_probs=230.1

Q ss_pred             ccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhH
Q 015223           11 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVG   90 (411)
Q Consensus        11 ~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~   90 (411)
                      +++.+.+.+++++.++++|+|++|||++++++|||++++++   +|+++|+|||+++|+|+++++.+.+|+++++||+++
T Consensus        28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~---~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~  104 (372)
T PF00854_consen   28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS---RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG  104 (372)
T ss_dssp             ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh---hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence            45667899999999999999999999999999999987422   389999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccceecc-CCCCCcchh-HHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccch
Q 015223           91 FGVSAAAMALGLFGVVSGTLYYRNK-RPQGSIFTP-IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRF  168 (411)
Q Consensus        91 F~i~~~~~~l~~i~~~~~~~~~~~~-~p~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (411)
                      |+++.+++++++++|+.++++|+++ +|.+++..+ ...+...+.+++....+.....+.+.....     ........ 
T Consensus       105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-  178 (372)
T PF00854_consen  105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGSSWLDWALFQY-----SERSIFGI-  178 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHHHHHHHHHHHH-----CCCCCCCC-
T ss_pred             hhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccchHHHHHhhhhh-----hhhhhhhh-
Confidence            9999999999999999999999877 678888888 444555555544333221111111100000     00000000 


Q ss_pred             hhhhhhhhhhccCCCCCCCCcc-cccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCC-eeeCC
Q 015223          169 RFLDKACIKVEDGTNKKESPWR-LCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN-FHVPP  246 (411)
Q Consensus       169 ~~l~~a~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g-~~i~~  246 (411)
                      .....+..+..+.    ...+. .++++++++.|.+.+.++.+...+.|+..+.|..+....|..++|+.++ + +++|+
T Consensus       179 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~  253 (372)
T PF00854_consen  179 IVFIRAAVIFFPE----IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPP  253 (372)
T ss_dssp             CCHHHHHHHHCCC----HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------S
T ss_pred             hhhccchhhhhhh----hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-ccccccc
Confidence            0000111111110    00111 1345667777777777777777777777777777777888888888787 7 89999


Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      ++++++|++.++++.|+++++++|+.++. +   +++++.|+++|++++.+++++.+.+|..|......++ ..+.+|++
T Consensus       254 ~~l~~~n~i~iii~~pi~~~~~~p~~~~~-~---~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~-~~~~~~~~  328 (372)
T PF00854_consen  254 AWLQSFNPIFIIIFIPILDRVVYPLLRRG-I---QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG-KVSPWWQV  328 (372)
T ss_dssp             GGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T-T--THHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhHHhhhc-c---cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-CCChhhHH
Confidence            99999999999999999999999999843 2   3689999999999999999999999987766555444 56779999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhH
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSF  369 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~  369 (411)
                      +.|++++++|.+.++...+.+++.+|+++.+.|+|+|+....+
T Consensus       329 ~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~  371 (372)
T PF00854_consen  329 PMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF  371 (372)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence            9999999999999988889999999999999999999877643

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=8.8e-34  Score=290.21  Aligned_cols=331  Identities=16%  Similarity=0.245  Sum_probs=242.2

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHH
Q 015223           17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAA   96 (411)
Q Consensus        17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~   96 (411)
                      .+++++++++++|.|+++|+..++++|+|+++++|    |+++|+++|+++|+|+++||.++|++.+++||+++|+++.+
T Consensus       106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            34668999999999999999999999999876643    78899999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhhcccceecc--CCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhh-hhh
Q 015223           97 AMALGLFGVVSGTLYYRNK--RPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRF-LDK  173 (411)
Q Consensus        97 ~~~l~~i~~~~~~~~~~~~--~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~  173 (411)
                      .++++++.+...++.+++.  +|++++ .|..+.+..............    ..            ..+...... +..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~l~~~~~~~~~~~~~----~~------------~~~~~~~~~~~~~  244 (489)
T PRK10207        182 GLIIALLVYFACRGMVKDIGSEPDHKP-MSFSKLLLVLLGSVVMIFVCA----WL------------MHNVEVANLVLIV  244 (489)
T ss_pred             HHHHHHHHHHHcchhhcccCCCCCccc-hhhhhHHHHHHHHHHHHHHHH----HH------------HhhhhHHHHHHHH
Confidence            8888888888887776543  233322 243332211111000000000    00            000000000 000


Q ss_pred             hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH-hhcccCCCCeeeCCccccch
Q 015223          174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGS-AMNNKLTKNFHVPPASLQSI  252 (411)
Q Consensus       174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~-~~~~~~g~g~~i~~~~l~~i  252 (411)
                      ...+...    . ..++.++.++ .+|++.+....+++..++||+.|+|+.+.+..+.. ++|++.. |+.++++++|++
T Consensus       245 ~~~i~~~----~-f~~~~~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~  317 (489)
T PRK10207        245 LSIVVTI----I-FFREAFKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQAL  317 (489)
T ss_pred             HHHHHHH----H-HHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhH
Confidence            0000000    0 0011112232 45677777778888899999999999776655553 5777776 899999999999


Q ss_pred             hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHH
Q 015223          253 PYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF  332 (411)
Q Consensus       253 n~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~  332 (411)
                      |++.++++.|+.++++.++.+|..    ++++.+|+++|+++.++|++.++..+....   ..++ .+|+||+++.|+++
T Consensus       318 n~~~iii~~pl~~~l~~rl~~r~~----~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~---~~~~-~~s~~~~i~~~~l~  389 (489)
T PRK10207        318 NPFWVVVASPILAGIYTHLGSKGK----DLSMPMKFTLGMFLCSLGFLTAAAAGMWFA---DAQG-LTSPWFIVLVYLFQ  389 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCC-ccCHHHHHHHHHHH
Confidence            999999999999999988876642    268999999999999999988765542211   1112 47899999999999


Q ss_pred             HHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          333 GLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       333 ~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      |+||++.+++.++++++.+|++++|.+||+|++++++|+.+|+.+++.+..
T Consensus       390 g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~  440 (489)
T PRK10207        390 SLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAV  440 (489)
T ss_pred             HHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999988753

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=2.5e-33  Score=293.04  Aligned_cols=252  Identities=27%  Similarity=0.449  Sum_probs=211.3

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc-------cc
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-------GM   87 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~-------g~   87 (411)
                      ....++++++++++|.|++|||.+++++|||++++++   +|+++|+|+|+++|+|+++++.+.+++++++       +|
T Consensus        84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~---~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~  160 (654)
T TIGR00926        84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS---LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY  160 (654)
T ss_pred             HHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence            3456889999999999999999999999999874432   3899999999999999999999999998543       69


Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccc
Q 015223           88 DVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQR  167 (411)
Q Consensus        88 ~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (411)
                      +++|++++++|+++++++..++|+|++.+|++++..++.+++..+++++....+.                     + ..
T Consensus       161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~---------------------~-~~  218 (654)
T TIGR00926       161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE---------------------H-WP  218 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc---------------------c-cc
Confidence            9999999999999999999999999877788888888888887777654211100                     0 11


Q ss_pred             hhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCc
Q 015223          168 FRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPA  247 (411)
Q Consensus       168 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~  247 (411)
                      .+|+|.+....              .+++++|+|++++++++++..++||..|+|+.+.+..|+.+|+.+++ ++.+|++
T Consensus       219 ~~~ld~a~~~~--------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~  283 (654)
T TIGR00926       219 LHWLDYAKDKH--------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPD  283 (654)
T ss_pred             hhHHHHhcccc--------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHH
Confidence            35666553311              23567899999999999999999999999999999999999998888 8999999


Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHh
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKR  309 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~  309 (411)
                      +++++|++.++++.|+++..++|..+|++.+   +++++|+++|+++++++++++++.|..+
T Consensus       284 ~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~  342 (654)
T TIGR00926       284 QMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKV  342 (654)
T ss_pred             HHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888887776432   6899999999999999999999988433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=3.6e-33  Score=285.11  Aligned_cols=329  Identities=16%  Similarity=0.220  Sum_probs=242.6

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++++.++++|.|+++|+.+++++|++++++++   +|+++++++|++.|+|+++||.+++++.+++||++.|+++
T Consensus       101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~  177 (475)
T TIGR00924       101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA  177 (475)
T ss_pred             cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            3567788999999999999999999999999876532   2788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccceeccCCCCCcchh----HHH-------HHHHHHHhhcccCCCCCccccccCCCCCCCCCCccc
Q 015223           95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTP----IAQ-------VFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVF  163 (411)
Q Consensus        95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~----~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (411)
                      ++.+++++++++..++.+++.++++++..+    ..+       ++....+.... ..+.                  ..
T Consensus       178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------------~~  238 (475)
T TIGR00924       178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWL-MHHV------------------VI  238 (475)
T ss_pred             HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH-Hhcc------------------HH
Confidence            988888888888888777544333322211    000       00001110000 0000                  00


Q ss_pred             cccchhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHH-HHHHHhhcccCCCCe
Q 015223          164 LTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFS-VQQGSAMNNKLTKNF  242 (411)
Q Consensus       164 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~-~~~~~~~~~~~g~g~  242 (411)
                      ..........+..+....  ...++    +.+. +++++...+++++++.++||++|+|+.+++ +++.+++|.+++ ++
T Consensus       239 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~  310 (475)
T TIGR00924       239 ANILLMTVTLAVIIFFFR--LAFKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GM  310 (475)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ce
Confidence            000000000011110000  00000    1122 345555677899999999999999998865 566777898887 89


Q ss_pred             eeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccch
Q 015223          243 HVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSI  322 (411)
Q Consensus       243 ~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~  322 (411)
                      ++|+++++++|++.+++++|++++++.++.+|. +   +++...|+++|+++.++|++.+++...    ..+++. ++|+
T Consensus       311 ~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~-~---~~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~~~-~~s~  381 (475)
T TIGR00924       311 SVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG-K---DPTTPLKFTLGMLFCGASFLTFAASIW----FADAGG-LTSP  381 (475)
T ss_pred             EECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC-C---CCCcHHHHHHHHHHHHHHHHHHHHHHh----hcCCCC-ccCH
Confidence            999999999999999999999999887776652 2   257888999999999999999987632    122222 5899


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          323 FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       323 ~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ||++++|+++|+||++.+|..++++++.+|+++||+++|++.+..++|+.+|+.+.....
T Consensus       382 ~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~  441 (475)
T TIGR00924       382 WFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGA  441 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999988663

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=4.4e-32  Score=278.74  Aligned_cols=321  Identities=13%  Similarity=0.244  Sum_probs=240.6

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223           16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA   95 (411)
Q Consensus        16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~   95 (411)
                      .+.+++++.++++|.|+++|+..++++++|++++++    |+++++++|+++|+|+++||.++|++.+++||++.|++++
T Consensus       112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~  187 (500)
T PRK09584        112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV  187 (500)
T ss_pred             HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            456778899999999999999999999999876543    6779999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccceecc--CCCCCcchhHHHHHH-------HHHHhhcccCCCCCccccccCCCCCCCCCCcccccc
Q 015223           96 AAMALGLFGVVSGTLYYRNK--RPQGSIFTPIAQVFV-------AAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQ  166 (411)
Q Consensus        96 ~~~~l~~i~~~~~~~~~~~~--~p~~~~~~~~~~v~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (411)
                      +.++++++.+++.++.++++  +|+++|. |..+.+.       .........  .+.                .. ...
T Consensus       188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------~~-~~~  247 (500)
T PRK09584        188 VGMLITVVNFAFCQRWVKQYGSKPDFEPI-NYRKLLLTIVGVVALIAIATWLL--HNQ----------------EI-ARM  247 (500)
T ss_pred             HHHHHHHHHHHHhHHHhccCCCCCCcccc-chhhHHHHHHHHHHHHHHHHHHH--hcc----------------hH-HHH
Confidence            98888888887777666543  2332222 2222111       111110000  000                00 000


Q ss_pred             chhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH-HhhcccCCCCeeeC
Q 015223          167 RFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQG-SAMNNKLTKNFHVP  245 (411)
Q Consensus       167 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~-~~~~~~~g~g~~i~  245 (411)
                      ...+.........        ..+.+..++ +|+++.+..+++++..++||++|.|+++.+..|+ +++|+++. |+.+|
T Consensus       248 ~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~  317 (500)
T PRK09584        248 ALGVVALGIVVIF--------GKEAFAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVE  317 (500)
T ss_pred             HHHHHHHHHHHHH--------HHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEEC
Confidence            0000000000000        000011222 4566777778888899999999999988776655 45777777 89999


Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      +++++++|++.+++++|+.++++.++.+|       +++.+|+++|+++.++|++.++....    .+++++ .+|.+|+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~----~~~~~~-~vs~~~~  385 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAK----FANDAG-IVSVNWL  385 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHH----hcCCCC-ccCHHHH
Confidence            99999999999999999999988776554       36789999999999999999887653    222223 6899999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      +++|+++|+||++++|..++++++.+|+++||+++|+|+++.++|+.+++.+.+.+.
T Consensus       386 ~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~  442 (500)
T PRK09584        386 IASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMA  442 (500)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999998764

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.58  E-value=7.4e-13  Score=129.26  Aligned_cols=267  Identities=10%  Similarity=0.044  Sum_probs=164.1

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++++.+.+++.+...|...+++.|.+++++      |+++++++..+.++|.++||.+++++.++.+|++.|++
T Consensus        90 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  163 (365)
T TIGR00900        90 LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV  163 (365)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            367888999999999999999999999999998643      79999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhhcccceeccCC-CCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhh
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKRP-QGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLD  172 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~p-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  172 (411)
                      .++..+++.+.....+.  +++++ ++++...                  +                  .    ..+..+
T Consensus       164 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------------------~------------------~----~~~~~~  201 (365)
T TIGR00900       164 DAVGFAISALLIVSVRI--PELAASEIQALSN------------------A------------------V----LRDTRE  201 (365)
T ss_pred             HHHHHHHHHHHHHhccc--ccCCCccccccch------------------h------------------H----HHHHHh
Confidence            87765555444332211  11000 0000000                  0                  0    000000


Q ss_pred             hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHh----hhhHHHHHHHHhhcccCCCCeeeCCcc
Q 015223          173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILA----QLQTFSVQQGSAMNNKLTKNFHVPPAS  248 (411)
Q Consensus       173 ~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~----q~~s~~~~~~~~~~~~~g~g~~i~~~~  248 (411)
                      ..+.                   -.+++ .+..   +......+...+.    ...+.+..+.    .+..   ....+.
T Consensus       202 ~~~~-------------------~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~  251 (365)
T TIGR00900       202 GIKF-------------------VLKNP-LLRT---LLLLALLFNLVFAPAIVALFPYVQSKY----LGRG---STHYGW  251 (365)
T ss_pred             HHHH-------------------HHcCc-HHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHH----hCCc---hHHHHH
Confidence            0000                   00111 1111   1111222222221    1112222211    1111   011233


Q ss_pred             ccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223          249 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ  328 (411)
Q Consensus       249 l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~  328 (411)
                      +.....+..++..++.+++.++..           ..+.+..+.++.+++++......            + +.+.+...
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~  307 (365)
T TIGR00900       252 VLAAFGLGALLGALLLGLLGRYFK-----------RMALMTGAIFVIGLAILVVGLTP------------P-NFPLFLVL  307 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-----------hhHHHHHHHHHHHHHHHHHHhhc------------h-hHHHHHHH
Confidence            444455555666666665443221           12224455666666666555432            1 35566777


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          329 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       329 ~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      .++.+++.....+...+++.+..|++.||.++|+++....+|..+++.+.+.+.
T Consensus       308 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       308 WFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999888889999999999999999999999999999999988764

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.57  E-value=4.8e-13  Score=137.73  Aligned_cols=315  Identities=12%  Similarity=0.040  Sum_probs=176.5

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++++.++++|.|+..|...+.+.+.+.+++     +|.++++++....++|..+||.+++++.++.|||+.|++
T Consensus        92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i  166 (495)
T PRK14995         92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI  166 (495)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence            467888999999999999999999888888875433     279999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchh--hh
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFR--FL  171 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l  171 (411)
                      ..+..++.++......+.   +++++++..|..+.+..........+..... ...+           ........  ..
T Consensus       167 ~~~~~~~~~~l~~~~l~~---~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~-~~~~-----------~~~~~~~~~~~~  231 (495)
T PRK14995        167 NVPIVLVVMGLTARYVPR---QAGRRDQPLNLGHALMLIVAILLLVYSAKTA-LKGF-----------LSLWVTSLTLLT  231 (495)
T ss_pred             HHHHHHHHHHHHHHhCCC---CCCCCCCCCChHhHHHHHHHHHHHHHHHHhc-cccC-----------CchHHHHHHHHH
Confidence            887666555444333222   1112222234333222111110000000000 0000           00000000  00


Q ss_pred             hhhhhhhcc--CC--CCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCc
Q 015223          172 DKACIKVED--GT--NKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPA  247 (411)
Q Consensus       172 ~~a~~~~~~--~~--~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~  247 (411)
                      .......+.  +.  ..-..+++++     +++......+..+.....+ ..+....+.+.++..+.+.       ...+
T Consensus       232 ~~~~l~~f~~~e~~~~~p~~~~~lf-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lq~v~g~s~-------~~ag  298 (495)
T PRK14995        232 GALLLGLFIRTQLAASRPMIDMRLF-----THRIILSGVVMAMTAMITL-VGFELLMAQELQFVHGLSP-------LEAG  298 (495)
T ss_pred             HHHHHHHHHHHHhcCCCCCcCHHHh-----CCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCH-------HHHH
Confidence            000000000  00  0000011111     1111111111111111111 1111112233333322221       1122


Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      .+.....+...+..|+.+++.++..+|           +-+..|+++.+++++.+.....           ..+.++..+
T Consensus       299 ~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~g~~~~~~~~~~l~~~~~-----------~~~~~~~~~  356 (495)
T PRK14995        299 MFMLPVMVASGFSGPIAGILVSRLGLR-----------LVATGGMALSALSFYGLAMTDF-----------STQQWQAWG  356 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHhcC-----------CCchHHHHH
Confidence            233334466677788888877544322           2246688888777776655421           134455566


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ..++.|+|..+..++....+.+.+|++.+|.+++++++.+.+|+.+|..+.+.+-.
T Consensus       357 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        357 LMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77899999999988777889999999999999999999999999999988887643

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.55  E-value=3e-13  Score=138.16  Aligned_cols=318  Identities=9%  Similarity=0.002  Sum_probs=177.3

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+...+++++.++++|.|...|...+++.|.+++++      |++++++++...++|..+||.+++++.++++|++.|++
T Consensus        88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~  161 (485)
T TIGR00711        88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI  161 (485)
T ss_pred             CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence            456788899999999999999999999999998543      79999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhh--
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFL--  171 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--  171 (411)
                      .++..++..+......++   .+++.....|..+....+.................|           ..........  
T Consensus       162 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  227 (485)
T TIGR00711       162 NVPIGIIVVVVAFFILPR---DKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGW-----------FDSNEILILSIT  227 (485)
T ss_pred             hhHHHHHHHHHHHHHcCC---ccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCC-----------CCchHHHHHHHH
Confidence            876655555444333222   112222223333322222111100000000000000           0000000000  


Q ss_pred             hhhhhhhcc--CCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccc
Q 015223          172 DKACIKVED--GTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASL  249 (411)
Q Consensus       172 ~~a~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l  249 (411)
                      .........  .. ....+.  ...+-..+++.....+..+.....++.... ..+.|.++..+++.       ...+.+
T Consensus       228 ~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~s~-------~~~g~~  296 (485)
T TIGR00711       228 GLVAIIAFVVWEL-TDDNPL--VDLRLFKYRNFTIGCVYMSLLGLGLYGSFY-LLPLYLQQVLGYTA-------LQAGLH  296 (485)
T ss_pred             HHHHHHHHHHHHH-cCCCCc--cCHHHHcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCH-------HHHHHH
Confidence            000000000  00 000000  000000111111111111111111111111 11223222111110       112344


Q ss_pred             cchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHH
Q 015223          250 QSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQF  329 (411)
Q Consensus       250 ~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~  329 (411)
                      .....+..++..|+.+++.++..+|           +.+.+|..+.+++++++....      .+    ..+.++++...
T Consensus       297 ~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~g~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~  355 (485)
T TIGR00711       297 ILPVGLAPMLSSPIAGRMGDKIDPR-----------KLVTIGLILYAVGFYWRAFTF------TP----DTPFLAIALPQ  355 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcH-----------HHHHHHHHHHHHHHHHHhccC------CC----CCCHHHHHHHH
Confidence            5556677778888888876544332           235667777777777665321      01    24566666778


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          330 LIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       330 ~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ++.++|..+..++....+.+..|++.+|.++|+.++.+.+|+.+|+.+.+.+-.
T Consensus       356 ~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       356 FIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999887776788888999999999999999999999999988886543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.52  E-value=4.1e-13  Score=130.52  Aligned_cols=266  Identities=15%  Similarity=0.124  Sum_probs=161.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++++.+.++|.+...|...+++.|.+++++      |.+++++.+...++|..+||.+++++.++++|++.|++.
T Consensus        84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~  157 (352)
T PF07690_consen   84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS  157 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred             hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence            44588999999999999999999999999999855      799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223           95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA  174 (411)
Q Consensus        95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  174 (411)
                      ++..++..+......+   ++++++....                 +.+                  ........+.+  
T Consensus       158 ~~~~~~~~il~~~~~~---~~~~~~~~~~-----------------~~~------------------~~~~~~~~~~~--  197 (352)
T PF07690_consen  158 AILSLIAAILFILFLP---EPPPPRERES-----------------PKE------------------SESKKPKPLKP--  197 (352)
T ss_dssp             HHHHHHHHHHHHCCC------STTTT--S-----------------STT------------------TT--HHHCCCH--
T ss_pred             cchhhhhhhhHhhhhh---hccccccccc-----------------ccc------------------ccccccccccc--
Confidence            8877776554322221   1111110000                 000                  00000000000  


Q ss_pred             hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhh---hHHHHHHHHhhcccCCCCeeeCCccccc
Q 015223          175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQL---QTFSVQQGSAMNNKLTKNFHVPPASLQS  251 (411)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~---~s~~~~~~~~~~~~~g~g~~i~~~~l~~  251 (411)
                                   .+     +...+.+.++.+   +.....+...+...   .+.|..+..+.+   +   ....+.+..
T Consensus       198 -------------~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~---~~~~~~~~~  250 (352)
T PF07690_consen  198 -------------GF-----KSLFKNPVLWIL---LIAFFLFFFVFSGFSFFLPLYLQEVLGFS---G---PSQAGLLFS  250 (352)
T ss_dssp             --------------C-----THHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHHHCCHHHHCC---T---HHHHHHHHH
T ss_pred             -------------cc-----ccccccchhhhh---hhhhhHHHHHHHHhhcccchhhhhccCCC---H---HHHHHHHHH
Confidence                         01     111222222111   11122222222222   122212222111   0   011233345


Q ss_pred             hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHH
Q 015223          252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI  331 (411)
Q Consensus       252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l  331 (411)
                      +..+..++..++.+++.+|+.+|           ++.........++.+.+.....           ..+..|.....++
T Consensus       251 ~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~  308 (352)
T PF07690_consen  251 IFGIVGIIGSLLAGRLSDRFGRR-----------RRLLIAILLLILGALGLLLLPF-----------SSSPVWLIIALFL  308 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHHCCSHH-----------HCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHH
Confidence            55555666677777776543322           2233444444444444433321           1245677778889


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHh
Q 015223          332 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS  375 (411)
Q Consensus       332 ~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~  375 (411)
                      .+++..+..+...+++.+.+|++.+|.++|+.+...++|..+||
T Consensus       309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  309 IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999986

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.47  E-value=5.9e-12  Score=126.13  Aligned_cols=259  Identities=10%  Similarity=0.102  Sum_probs=160.0

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++++++.+++.|...|...+++.|.+++++      |++++++.+...++|..+||.+++++. .++|++.|++.
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~  170 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG  170 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            56778889999999999999999999999998644      799999999999999999999999998 68999999988


Q ss_pred             HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223           95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA  174 (411)
Q Consensus        95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  174 (411)
                      ++..++..+......++   .+++.+ ..+                                     ..    .++    
T Consensus       171 ~~~~~~~~i~~~~~~~~---~~~~~~-~~~-------------------------------------~~----~~~----  201 (400)
T PRK11646        171 AVLFVLAAAFNAWLLPA---YKLSTV-RTP-------------------------------------VR----EGM----  201 (400)
T ss_pred             HHHHHHHHHHHHHhCCc---cccccc-chh-------------------------------------hH----HHH----
Confidence            76655544333322111   000000 000                                     00    000    


Q ss_pred             hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhh---HHHHHHHHhhcccCCCCeeeCCccccc
Q 015223          175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQ---TFSVQQGSAMNNKLTKNFHVPPASLQS  251 (411)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~---s~~~~~~~~~~~~~g~g~~i~~~~l~~  251 (411)
                      .                   +...+++. .....   ....++..+.+..   +.+.+ +.      + +.....+.+..
T Consensus       202 ~-------------------~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~p~~~~-~~------~-~~~~~~g~l~~  250 (400)
T PRK11646        202 T-------------------RVLRDKRF-VTYVL---TLTGYYMLAVQVMLMLPIMVN-DI------A-GSPSAVKWMYA  250 (400)
T ss_pred             H-------------------HHHcCchH-HHHHH---HHHHHHHHHHHHHHhhhhhHH-hh------c-CCchHHHHHHH
Confidence            0                   00012211 11111   1112222222221   12221 11      1 10111233444


Q ss_pred             hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHH
Q 015223          252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI  331 (411)
Q Consensus       252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l  331 (411)
                      ++.+..+.......++.+   +|.       +..+++..+.++.+++++.+...+              +.++++....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~---~r~-------~~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~~~~~~l  306 (400)
T PRK11646        251 IEACLSLTLLYPIARWSE---KRF-------RLEHRLMAGLLIMSLSMFPIGMVS--------------NLQQLFTLICL  306 (400)
T ss_pred             HHHHHHHHHHHHHHHHHH---Hhc-------chhHHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHH
Confidence            454443333322333332   221       233456777777777776665432              34445555578


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223          332 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  384 (411)
Q Consensus       332 ~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~  384 (411)
                      .++|+.+..|...+.+.+.+|++.+|.++|++++..++|+.+|+.+.+.+...
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            89999988888889999999999999999999999999999999999988654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.46  E-value=1.6e-11  Score=122.20  Aligned_cols=260  Identities=9%  Similarity=0.003  Sum_probs=157.2

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++++.+++++.+...|...+++.|.+++++      |.++++++..+.++|..+||.+++++.+++|||+.|++
T Consensus        95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  168 (390)
T PRK03545         95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA  168 (390)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence            456788899999999999999999999999998644      79999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK  173 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  173 (411)
                      .++..++..+.....   +++ +|++++ .+                                     ..     +.   
T Consensus       169 ~~~~~~l~~~~~~~~---~~~-~~~~~~-~~-------------------------------------~~-----~~---  198 (390)
T PRK03545        169 IGGGALITLLLLIKL---LPL-LPSEHS-GS-------------------------------------LK-----SL---  198 (390)
T ss_pred             HHHHHHHHHHHHHHh---CCC-CCCCCc-ch-------------------------------------HH-----HH---
Confidence            886655444333322   111 111100 00                                     00     00   


Q ss_pred             hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchh
Q 015223          174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIP  253 (411)
Q Consensus       174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in  253 (411)
                       .                   +-..+++....++..+.....++..+.... .+.....+++.       -..+.+..+.
T Consensus       199 -~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~g~s~-------~~~~~~~~~~  250 (390)
T PRK03545        199 -P-------------------LLFRRPALVSLYLLTVVVVTAHFTAYSYIE-PFVQQVAGLSE-------NFATLLLLLF  250 (390)
T ss_pred             -H-------------------HHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCc-------cHHHHHHHHH
Confidence             0                   000111111111111111222222221111 12111111111       1123334444


Q ss_pred             HHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHH
Q 015223          254 YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFG  333 (411)
Q Consensus       254 ~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~  333 (411)
                      .+..++..++.+++.+    |.       . .+++..+..+.+++........             .+.+++++..++.+
T Consensus       251 ~~~~~~g~~~~g~l~d----r~-------~-~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~~~~l~g  305 (390)
T PRK03545        251 GGAGIIGSVLFSRLGN----RH-------P-SGFLLIAIALLLVCLLLLLPAA-------------NSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHHHHHHHHHhh----cc-------c-hhHHHHHHHHHHHHHHHHHHHh-------------chHHHHHHHHHHHH
Confidence            4555666666555443    22       1 2335556666555554443321             24556667778899


Q ss_pred             HHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          334 LSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       334 ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ++.....+...+.+.+..| +.++.++|+++....+|..+|+.+.+.+..
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~  354 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL  354 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9988877777777888777 578999999999899999999999887654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.44  E-value=2.8e-11  Score=118.81  Aligned_cols=85  Identities=13%  Similarity=0.087  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++++.+.++|.|...|...+++.|.+++++      |++++++.....++|.++++.+++++.++.+|++.|.+.
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  154 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE  154 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence            67888999999999999999999999999998533      799999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q 015223           95 AAAMALGLFGV  105 (411)
Q Consensus        95 ~~~~~l~~i~~  105 (411)
                      ++..++..+..
T Consensus       155 ~~~~~~~~~~~  165 (399)
T TIGR00893       155 GVLGIIWGVLW  165 (399)
T ss_pred             HHHHHHHHHHh
Confidence            76655444443

>PRK10504 putative transporter; Provisional

Probab=99.44  E-value=2e-11  Score=124.55  Aligned_cols=312  Identities=6%  Similarity=-0.026  Sum_probs=166.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.++++++++++|.|...|...+.+.|.+++++      |.+++++.....++|..+||.+++++.++.||++.|.++
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~  170 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN  170 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence            45677889999999999999999999999987533      788999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223           95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA  174 (411)
Q Consensus        95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  174 (411)
                      .+...++.+......++.    +..+...|..+...............+     +.+.    .+   ............+
T Consensus       171 ~~~~~l~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~---~~~~~~~~~~~~~  234 (471)
T PRK10504        171 IPVGIIGAIATLMLMPNY----TMQTRRFDLSGFLLLAVGMATLTLALD-----GSKG----LG---LSPLAIAGLVAVG  234 (471)
T ss_pred             HHHHHHHHHHHHHhCCCc----cccCCCCChHHHHHHHHHHHHHHHHHh-----cCCc----CC---cchHHHHHHHHHH
Confidence            876655555444332221    111222333322222111100000000     0000    00   0000000000000


Q ss_pred             hhhh-ccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhh---hhHHHHHHHHhhcccCCCCeeeCCcccc
Q 015223          175 CIKV-EDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQ---LQTFSVQQGSAMNNKLTKNFHVPPASLQ  250 (411)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q---~~s~~~~~~~~~~~~~g~g~~i~~~~l~  250 (411)
                      .... ................+-..++ ...   ..+......+..+..   ..+.|.+...+.+.       ...+.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~g~~~  303 (471)
T PRK10504        235 VVALLLYLLHARNNNRALFSLKLFRTR-TFS---LGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSP-------FHAGLMM  303 (471)
T ss_pred             HHHHHHHHHHHhcCCCCccCHHHhccc-chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-------HHHHHHH
Confidence            0000 0000000000000000000111 111   122222222222222   12223222111111       1112222


Q ss_pred             chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223          251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL  330 (411)
Q Consensus       251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~  330 (411)
                      ....+..++..++.+++.+++.+|           +-+..|..+.+++.+++....        .   ..+.+++....+
T Consensus       304 ~~~~~~~~~~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~  361 (471)
T PRK10504        304 IPMVLGSMGMKRIVVQVVNRFGYR-----------RVLVATTLGLALVSLLFMLVA--------L---LGWYYLLPFVLF  361 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHHHHHhcc--------c---cccHHHHHHHHH
Confidence            333344455556666665444322           224557776666665555432        0   123334455678


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          331 IFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       331 l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      +.+++..+..+.....+.+..|++.+|.++|++++.+.+|+.+|+.+.+.+
T Consensus       362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999998888878999999999999999999999999999999888765

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.41  E-value=5.8e-11  Score=119.35  Aligned_cols=265  Identities=9%  Similarity=0.001  Sum_probs=156.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++.+++.+++.|...|...+++.|.+++++      |.++.++.++..++|..+||.+++++.+..+|++.|.+.
T Consensus       109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~  182 (417)
T PRK10489        109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA  182 (417)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence            45677788888999999889999999999987643      788999999999999999999999999888999999988


Q ss_pred             HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223           95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA  174 (411)
Q Consensus        95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  174 (411)
                      ++..+++.+.....    ++.+|++.+.                   .+                 ...     +..+..
T Consensus       183 ~~~~~~~~~~~~~l----~~~~~~~~~~-------------------~~-----------------~~~-----~~~~~~  217 (417)
T PRK10489        183 AAGTFITLLPLLRL----PALPPPPQPR-------------------EH-----------------PLR-----SLLAGF  217 (417)
T ss_pred             HHHHHHHHHHHHhC----CCCCCCCccc-------------------cc-----------------chH-----HHHHHH
Confidence            77666554443322    1111110000                   00                 000     000000


Q ss_pred             hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchhH
Q 015223          175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPY  254 (411)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in~  254 (411)
                      +                    .+...+.+...+........+. .+....+.|..+..+++.       -..+.+.....
T Consensus       218 ~--------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~g~~~-------~~~g~~~~~~~  269 (417)
T PRK10489        218 R--------------------FLLASPVVGGIALLGGLLTMAS-AVRVLYPALADEVWQMGA-------AQIGLLYAAVP  269 (417)
T ss_pred             H--------------------HHHcChHHHHHHHHHHHHHHHH-hHHHhhHHHHHhccCCCh-------hHhHHHHHHHH
Confidence            0                    0000111111111111111111 111111122221111110       01233444555


Q ss_pred             HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223          255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL  334 (411)
Q Consensus       255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i  334 (411)
                      +..++...+.+++.    +|.       +..+.+..+.++.+++++.+...              .+.+......++.++
T Consensus       270 ~g~~ig~~~~~~l~----~~~-------~~~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~  324 (417)
T PRK10489        270 LGAALGALTSGWLA----HSA-------RPGLLMLLSTLGSFLAVGLFGLM--------------PMWILAVLCLALFGY  324 (417)
T ss_pred             HHHHHHHHHHHHhh----hcc-------CcchHHHHHHHHHHHHHHHHHcc--------------chHHHHHHHHHHHHH
Confidence            55555555555433    221       12233456666666666555432              234445566788888


Q ss_pred             HHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          335 SEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       335 ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      +.....+...+++.+..|++.||.++|+++....+|+.+|+.+.+.+..
T Consensus       325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~  373 (417)
T PRK10489        325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA  373 (417)
T ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence            8887777777888999999999999999999999999999998887654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.40  E-value=7.3e-11  Score=114.12  Aligned_cols=241  Identities=16%  Similarity=0.121  Sum_probs=171.2

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++++.+.+++.+...|...++..|.+++++      |.+++++.+...++|..+++.+++++.++.+|++.|.+
T Consensus        85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  158 (352)
T cd06174          85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI  158 (352)
T ss_pred             ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            356778899999999999999999999999998744      79999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK  173 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  173 (411)
                      .++..+++.+......             +..                                                
T Consensus       159 ~~~~~~~~~~~~~~~~-------------~~~------------------------------------------------  177 (352)
T cd06174         159 LAILGLLLALLLLFLL-------------RLL------------------------------------------------  177 (352)
T ss_pred             HHHHHHHHHHHHHHHH-------------HHH------------------------------------------------
Confidence            8877666554443221             000                                                


Q ss_pred             hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHH-HHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccch
Q 015223          174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVP-IFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSI  252 (411)
Q Consensus       174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~i  252 (411)
                                                    ..... .+.....+.. +.+..+.+..+..    +..   ....+.+...
T Consensus       178 ------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~---~~~~~~~~~~  219 (352)
T cd06174         178 ------------------------------LLLALAFFLLSFGYYG-LLTYLPLYLQEVL----GLS---AAEAGLLLSL  219 (352)
T ss_pred             ------------------------------HHHHHHHHHHHhHHHH-HHHHHHHHHHHhc----CCC---HHHHHHHHHH
Confidence                                          00000 0000001111 1111111111110    111   1123445566


Q ss_pred             hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHH
Q 015223          253 PYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF  332 (411)
Q Consensus       253 n~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~  332 (411)
                      ..+..++..++.+++.+|..+|+       +   .+..+.++..++++.....+              +.+++...+++.
T Consensus       220 ~~~~~~i~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~  275 (352)
T cd06174         220 FGLGGILGALLGGLLSDRLGRRR-------L---LLLIGLLLAALGLLLLALAP--------------SLALLLVALLLL  275 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh-------H---HHHHHHHHHHHHHHHHHHhc--------------cHHHHHHHHHHH
Confidence            66777777888887765554331       0   35678888888877776542              366778889999


Q ss_pred             HHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          333 GLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       333 ~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ++++....+...+++.+..|++.|+..+|+++....+|+.+++.+.+.+..
T Consensus       276 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~  326 (352)
T cd06174         276 GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD  326 (352)
T ss_pred             HHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999998888999999999999999999999999999999999988754

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.39  E-value=2e-11  Score=137.77  Aligned_cols=279  Identities=9%  Similarity=-0.008  Sum_probs=163.8

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++++++++++.+.+.|...+++.|.+++++      |..+.++..++.++|.++||.++|++.+..+|++.|.+
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~  179 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL  179 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            457889999999999999999999999999999755      79999999999999999999999999999999999954


Q ss_pred             HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK  173 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  173 (411)
                      .++..+++.+.....    ++.+++..+.+.                  ..               ... .    ...+.
T Consensus       180 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~------------------~~---------------~~~-~----~~~~~  217 (1140)
T PRK06814        180 LMGIAVLGWLASLFI----PKTGNAAPDLKI------------------DR---------------NII-R----STITL  217 (1140)
T ss_pred             HHHHHHHHHHHHhhC----CCCCCCCCCCee------------------cc---------------chH-H----HHHHH
Confidence            444333332222221    111111000000                  00               000 0    00000


Q ss_pred             hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhh---hHHHHHHHHhhcccCCCCeeeCCcccc
Q 015223          174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQL---QTFSVQQGSAMNNKLTKNFHVPPASLQ  250 (411)
Q Consensus       174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~---~s~~~~~~~~~~~~~g~g~~i~~~~l~  250 (411)
                      ..                    .+...+.++.+   .+....++.+....   .+.|..+.    .+.+   ..-.+.+.
T Consensus       218 ~~--------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~----~g~~---~~~~g~~~  267 (1140)
T PRK06814        218 LK--------------------YAKADKRIWLA---ILGISWFWLVGAVVLSQLPLLAKET----LGGD---ENVATLFL  267 (1140)
T ss_pred             HH--------------------HHhcCchHHHH---HHHHHHHHHHHHHHHHHhHHHHHHH----cCCc---hHHHHHHH
Confidence            00                    00011111121   11112222222211   12332221    1111   01134456


Q ss_pred             chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccC-------CCccchH
Q 015223          251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDS-------GKTLSIF  323 (411)
Q Consensus       251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~-------~~~~s~~  323 (411)
                      +...+..++...+.+++..+..+           .+.+..|.++.+++.+.+.+... ........       -...+.+
T Consensus       268 ~~~~~g~~ig~~~~g~l~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~  335 (1140)
T PRK06814        268 AVFSVGVAVGSFLASKLSEGRIT-----------LLYVPIGALLMGLFGLDLAFASS-SVPAEPAQLKSILVFLSKRHGW  335 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcee-----------eeeehHHHHHHHHHHHHHHhccc-ccccccccccchhhhhcccccH
Confidence            66667777777777766422111           12234454444444443332100 00000000       0013556


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          324 SITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       324 ~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ++++.+++.+++..+..++..+++.+.+|++++|.++|++++...+|+.+|+.+.+.+.
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788899999999999889999999999999999999999999999999998888764

>PRK12382 putative transporter; Provisional

Probab=99.39  E-value=1.2e-10  Score=115.93  Aligned_cols=253  Identities=9%  Similarity=0.029  Sum_probs=156.8

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+...+++++.++++|.+...|...+.+.|.+++++      |.++++++..+.++|..+||.+++++.+++||++.+.+
T Consensus       110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  183 (392)
T PRK12382        110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT  183 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            456778899999999999999999999999987644      79999999999999999999999999999999988776


Q ss_pred             HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK  173 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  173 (411)
                      ..+..+   +.+... ++.++.+++++.                     ..                        +..  
T Consensus       184 ~~~~~~---~~~~~~-~~~~~~~~~~~~---------------------~~------------------------~~~--  212 (392)
T PRK12382        184 TMVLPL---LAWAFN-GTVRKVPAHAGE---------------------RP------------------------SLW--  212 (392)
T ss_pred             HHHHHH---HHHHHH-HhccCCCCCccc---------------------Cc------------------------hHH--
Confidence            554322   222221 111111110000                     00                        000  


Q ss_pred             hhhhhccCCCCCCCCcccccchhHHHHHHHHhH-HHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccch
Q 015223          174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISV-VPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSI  252 (411)
Q Consensus       174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~i  252 (411)
                                              +..|.+... +..+.....+....... +.+..+     .    ++. ........
T Consensus       213 ------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-----~----~~~-~~~~~~~~  257 (392)
T PRK12382        213 ------------------------SVVGLIWKPGLGLALQGVGFAVIGTFV-SLYFAS-----K----GWA-MAGFTLTA  257 (392)
T ss_pred             ------------------------HHHHHHHHhHHHHHHHHHHHhHHHHHH-HHHHHh-----c----CCc-hhHHHHHH
Confidence                                    000000000 01111111111111111 122211     1    111 11222334


Q ss_pred             hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHH
Q 015223          253 PYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF  332 (411)
Q Consensus       253 n~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~  332 (411)
                      ..+..++..++.+++.++..+|           +.+..+..+.+++++.....              .+.++..+..++.
T Consensus       258 ~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~  312 (392)
T PRK12382        258 FGGAFVLMRVLFGWMPDRFGGV-----------KVAIVSLLVETVGLLLLWLA--------------PTAWVALAGAALT  312 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCC-----------eehHHHHHHHHHHHHHHHHc--------------ccHHHHHHHHHHH
Confidence            4455566677777766544332           22456777777776655542              1345566677899


Q ss_pred             HHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          333 GLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       333 ~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ++++....+.....+.+..|++.||.++|+++....+|+.+|+.+.+.+..
T Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~  363 (392)
T PRK12382        313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT  363 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888777788899999999999999999999999999998887644

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.39  E-value=9.5e-11  Score=117.07  Aligned_cols=268  Identities=13%  Similarity=0.010  Sum_probs=158.7

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+.+.+.+.+++.|...|...+++.|.+++++      |++++++++...++|..+++.+++++.+..+|++.|++
T Consensus       101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  174 (406)
T PRK11551        101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV  174 (406)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence            356777889999999999999999999999997644      79999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK  173 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  173 (411)
                      .++..++..+......   ++ +|+..+.             +  . ..+.                 . .    .....
T Consensus       175 ~~~~~~~~~~~~~~~l---~~-~~~~~~~-------------~--~-~~~~-----------------~-~----~~~~~  212 (406)
T PRK11551        175 GGVGPLLLVPLLMRWL---PE-SRAFAQA-------------A--G-AGKQ-----------------R-A----PVLRA  212 (406)
T ss_pred             HHHHHHHHHHHHHHhC---CC-ChhHHhc-------------c--C-cchh-----------------h-h----hhHHH
Confidence            7755444433332211   11 1110000             0  0 0000                 0 0    00000


Q ss_pred             hhhhhccCCCCCCCCcccccchhHHHHHHHHhH-HHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccch
Q 015223          174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISV-VPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSI  252 (411)
Q Consensus       174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~i  252 (411)
                                       .++.  .+.+ +...+ +..+.....++...... +.+.. .    .+..   .-..+.+...
T Consensus       213 -----------------~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~~-~----~g~s---~~~~~~~~~~  263 (406)
T PRK11551        213 -----------------LFGE--GRAT-ATLLLWISYFFTLIVLYFLLNWL-PSLLV-G----QGLS---RSQAGLVQIA  263 (406)
T ss_pred             -----------------Hhhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHH-HHHHH-h----CCCC---hhhhhHHHHH
Confidence                             0000  0111 11111 11111122222222211 12211 1    1111   0112334444


Q ss_pred             hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHH
Q 015223          253 PYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF  332 (411)
Q Consensus       253 n~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~  332 (411)
                      ..+..++...+.+++.+++.+|+           .+..+.+..+++++.....              .+.+++....++.
T Consensus       264 ~~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~  318 (406)
T PRK11551        264 FNIGGALGSLLIGALMDRLRPRR-----------VVLLIYAGILASLAALAAA--------------PSFAGMLLAGFAA  318 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHhc--------------CcHHHHHHHHHHH
Confidence            45556666777777766554331           1233444444444433322              2344555566777


Q ss_pred             HHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          333 GLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       333 ~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      +++.....+...+++.+..|++.||..+|+.+....+|..+|+.+.+.+..
T Consensus       319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence            887777777777889999999999999999999999999999999988754

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.38  E-value=1e-10  Score=116.32  Aligned_cols=263  Identities=13%  Similarity=0.067  Sum_probs=159.7

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223           13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFG   92 (411)
Q Consensus        13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~   92 (411)
                      ..+.+.+++.+.+++.+.+...|...++..+. +  +     +|++.++......++|..++|.+++++.+++||+..|+
T Consensus        91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~--~-----~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~  162 (382)
T TIGR00902        91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW-Q--K-----QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA  162 (382)
T ss_pred             hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH-H--H-----HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence            34577888888889999988999988886542 2  1     15778999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhh
Q 015223           93 VSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLD  172 (411)
Q Consensus        93 i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  172 (411)
                      +......+.++.+ ...+   +.+|++++ .                   +..                ...  ..++. 
T Consensus       163 ~~~~~~~~~~~~~-~~~~---~~~~~~~~-~-------------------~~~----------------~~~--~~~~~-  199 (382)
T TIGR00902       163 ILTAGLAFMLIGF-LIKP---TIPPKDAI-P-------------------EDE----------------SQG--DSAFI-  199 (382)
T ss_pred             HHHHHHHHHHHHH-HcCC---CCCCCccc-c-------------------ccc----------------ccc--chhHH-
Confidence            8664432222222 2111   10111100 0                   000                000  00000 


Q ss_pred             hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccch
Q 015223          173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSI  252 (411)
Q Consensus       173 ~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~i  252 (411)
                                       ++     .+++ ++..+   .+.....+..+.+..+.....-+  +....   ....+.+..+
T Consensus       200 -----------------~~-----l~~~-~~~~~---l~~~~l~~~~~~~~~~~~~~~l~--~~g~s---~~~~g~l~~~  248 (382)
T TIGR00902       200 -----------------AL-----LKNP-MNLRF---LAAVCLIQGAHAAYYGFSAIYWQ--AAGIS---ASATGLLWGI  248 (382)
T ss_pred             -----------------HH-----HcCh-HHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HCCCC---HhHHHHHHHH
Confidence                             00     0122 22222   12222223333333222111111  11111   0112334555


Q ss_pred             hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHH
Q 015223          253 PYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF  332 (411)
Q Consensus       253 n~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~  332 (411)
                      ..+..++..++.+++.    +|.       ++.+-+.+|.++.++.++..+..+              +++++++..+++
T Consensus       249 ~~~~~i~~~~~~~~l~----~r~-------g~~~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~~~q~l~  303 (382)
T TIGR00902       249 GVLAEIIIFAFSNKLF----QNC-------SARDLLLISAIACVGRWAIIGAIE--------------AFPLIFLLQILH  303 (382)
T ss_pred             HHHHHHHHHHHhHHHH----hhC-------CHHHHHHHHHHHHHHHHHHHHhHh--------------hHHHHHHHHHHH
Confidence            5566666666655554    332       333446788888888888776643              566667677999


Q ss_pred             HHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH-HHHhHHHHHHhHhhhhhcc
Q 015223          333 GLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY-CSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       333 ~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~-l~~~~G~~lg~~l~~~~~~  383 (411)
                      ++...+..+....++.+. |++.++.++|+++ +..++|..+|+.+++.+..
T Consensus       304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~  354 (382)
T TIGR00902       304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP  354 (382)
T ss_pred             HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888999988 9999999999976 5678999999999887754

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.38  E-value=2.6e-10  Score=113.77  Aligned_cols=251  Identities=12%  Similarity=0.032  Sum_probs=153.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +...+++.+.++++|.+...|...+.+.|.+++++      |.++++++..+.++|..+|+.+++++.+++||++.|++.
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  184 (399)
T PRK05122        111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI  184 (399)
T ss_pred             HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            35578889999999999999999999999997654      788999999999999999999999999999999998876


Q ss_pred             HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223           95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA  174 (411)
Q Consensus        95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  174 (411)
                      .+..++.   ++..++ .++.++++++                     .                  .      ++    
T Consensus       185 ~~~~~~~---~~~~~~-~~~~~~~~~~---------------------~------------------~------~~----  211 (399)
T PRK05122        185 MLLALLG---LLLARP-RPAVPPVKGE---------------------R------------------L------PF----  211 (399)
T ss_pred             HHHHHHH---HHHHhc-CCCCCCCCcc---------------------c------------------h------hH----
Confidence            6543322   222111 1110000000                     0                  0      00    


Q ss_pred             hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHH-HHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchh
Q 015223          175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIF-ACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIP  253 (411)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~-~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in  253 (411)
                                            .+..|+.......+ +....+....... ..+.. .    .    +.. ..+......
T Consensus       212 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~----~----~~~-~~~~~~~~~  258 (399)
T PRK05122        212 ----------------------RRVLGRVWPYGMGLALASIGFGTIATFI-TLYYA-A----R----GWD-GAALALTLF  258 (399)
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-H----c----ccc-cchHHHHHH
Confidence                                  00011111111111 1111111111111 12211 1    1    110 112223334


Q ss_pred             HHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHH
Q 015223          254 YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFG  333 (411)
Q Consensus       254 ~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~  333 (411)
                      .+..++..++.+++.++..+           .+.+..+.++.+++++.....              .+.+++++..++.+
T Consensus       259 ~~~~~~~~~~~g~l~~r~~~-----------~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~G  313 (399)
T PRK05122        259 GVAFVGARLLFGNLINRLGG-----------LRVAIVSLLVEILGLLLLWLA--------------PSPWMALIGAALTG  313 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHH
Confidence            44555555666665543322           233456667777776665543              24555667778999


Q ss_pred             HHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          334 LSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       334 ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ++.....+.....+.+..|++.||.++|+++....+|..+++.+.+.+.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  362 (399)
T PRK05122        314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA  362 (399)
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888777677889999999999999999999999988887777654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.36  E-value=1.9e-10  Score=114.25  Aligned_cols=259  Identities=10%  Similarity=0.026  Sum_probs=153.5

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++.+.+++++.+...|...++..|..+  +      |+++++...+..++|..+||.+++++.+++||+..|++
T Consensus        92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~  163 (382)
T PRK11128         92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--Q------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI  163 (382)
T ss_pred             ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--h------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            456777788888999999999998888887621  1      56678888888899999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK  173 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  173 (411)
                      .++...+..+... ..   ++.+|++++.+                  ..                  .+.  ..++   
T Consensus       164 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~------------------~~------------------~~~--~~~~---  198 (382)
T PRK11128        164 LTAGVASMLLGQL-LR---PTIMPQGESRQ------------------QE------------------SAG--WPAW---  198 (382)
T ss_pred             HHHHHHHHHHHHH-cc---CCCCCcccccc------------------cc------------------ccc--cchH---
Confidence            7754443332222 11   11111110000                  00                  000  0000   


Q ss_pred             hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhh---HHHHHHHHhhcccCCCCeeeCCcccc
Q 015223          174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQ---TFSVQQGSAMNNKLTKNFHVPPASLQ  250 (411)
Q Consensus       174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~---s~~~~~~~~~~~~~g~g~~i~~~~l~  250 (411)
                                           .+....|.++.++.   ........+.+..   +.|..     +.+..   .-..+.+.
T Consensus       199 ---------------------~~i~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~-----~~g~s---~~~~g~~~  246 (382)
T PRK11128        199 ---------------------KALLKEPTVWRFLL---CVSLLQGSHAAYYGFSAIYWQ-----AAGYS---ASTIGYLW  246 (382)
T ss_pred             ---------------------HHHHcChhHHHHHH---HHHHHHHHhHhHHHHHHHHHH-----HCCCC---HhHHHHHH
Confidence                                 00011112222211   1111122222221   12221     11111   01134445


Q ss_pred             chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223          251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL  330 (411)
Q Consensus       251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~  330 (411)
                      .++.+..++...+.+++.++..           ..+.+..+.++.+++++.+...+              +.+++++..+
T Consensus       247 ~~~~~~~~~~~~~~g~l~~r~~-----------~~~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~  301 (382)
T PRK11128        247 SLGVVAEVLIFAFSNRLFRRWS-----------ARDLLLLSAICGVVRWGLMGSTT--------------ALPWLIVIQI  301 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHHHHHHHhhh--------------hHHHHHHHHH
Confidence            5666666666666666654332           23335677777777776665432              5666777889


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH-HHHhHHHHHHhHhhhhhcc
Q 015223          331 IFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY-CSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       331 l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~-l~~~~G~~lg~~l~~~~~~  383 (411)
                      +.++++.+..+....++.+. |++.++.+++..+ +..++|..+|+.+++.+..
T Consensus       302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888776 5666788888876 6667888888888887644

>TIGR00895 2A0115 benzoate transport

Probab=99.35  E-value=4.3e-10  Score=111.04  Aligned_cols=83  Identities=18%  Similarity=0.234  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++++.+.+++.|...|...+++.|.+++++      |.++++++..+.++|..+++.+++++.++.+|++.|++.
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  177 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG  177 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence            46678889999999999999999999999997543      789999999999999999999999999999999999988


Q ss_pred             HHHHHHHHH
Q 015223           95 AAAMALGLF  103 (411)
Q Consensus        95 ~~~~~l~~i  103 (411)
                      ++...+..+
T Consensus       178 ~~~~~~~~~  186 (398)
T TIGR00895       178 GIAPLLLLL  186 (398)
T ss_pred             hhHHHHHHH
Confidence            644444433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.35  E-value=3.3e-10  Score=113.33  Aligned_cols=271  Identities=13%  Similarity=0.019  Sum_probs=157.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++.+++++++.+...|...+.+.|.+++++      |.+++++.+...++|..+||.+++++.++.+|++.|++.
T Consensus       100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~  173 (406)
T PRK15402        100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF  173 (406)
T ss_pred             cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            45678889999999999999999999999997643      677888888888999999999999999999999999987


Q ss_pred             HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223           95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA  174 (411)
Q Consensus        95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  174 (411)
                      ++..+++.+......+   +. ++.++..                   .+                 .     .+..+..
T Consensus       174 ~~~~~~~~~~~~~~~~---~~-~~~~~~~-------------------~~-----------------~-----~~~~~~~  208 (406)
T PRK15402        174 AALAALSFFGLWRAMP---ET-AGRVGEK-------------------LS-----------------L-----KELGRDY  208 (406)
T ss_pred             HHHHHHHHHHHHHhCC---CC-Ccccccc-------------------cc-----------------H-----HHHHHHH
Confidence            7666555443332211   11 1000000                   00                 0     0000000


Q ss_pred             hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchhH
Q 015223          175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPY  254 (411)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in~  254 (411)
                      +..                   ..++ ++......+.........+....+.+..+..    ... .  ...+.....-.
T Consensus       209 ~~~-------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----g~~-~--~~~g~~~~~~~  261 (406)
T PRK15402        209 KLV-------------------LKNR-RFVAGALALGLVSLPLLAWIALSPVILISGE----QLS-S--YEYGLLQVPVF  261 (406)
T ss_pred             HHH-------------------HcCc-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh----CCC-H--HHHHHHHHHHH
Confidence            000                   0111 1111111111110001111111122222111    111 0  00112222222


Q ss_pred             HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223          255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL  334 (411)
Q Consensus       255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i  334 (411)
                      +..++..++.+++.++..+           .+.+.+|.++.+++.+........      .   ..+.+|++...++.++
T Consensus       262 ~~~~~g~~~~g~l~~r~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~------~---~~~~~~~~~~~~~~g~  321 (406)
T PRK15402        262 GALIAGNLTLARLTSRRPL-----------RSLIRMGLWPMVAGLLLAALATVI------S---SHAYLWLTAGLSLYAF  321 (406)
T ss_pred             HHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHHHHc------c---cccHHHHHHHHHHHHH
Confidence            3344555555655443322           233566777777777776654310      0   2357778888899999


Q ss_pred             HHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223          335 SEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  384 (411)
Q Consensus       335 ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~  384 (411)
                      |+....+..+.... ..+++.+|.+.+.+++.+.+|+.+|+.+.+.+...
T Consensus       322 g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~  370 (406)
T PRK15402        322 GIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG  370 (406)
T ss_pred             HHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            99998877655554 45669999999999999999999999999987554

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.33  E-value=2.5e-10  Score=117.68  Aligned_cols=268  Identities=13%  Similarity=0.140  Sum_probs=165.7

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223           13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFG   92 (411)
Q Consensus        13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~   92 (411)
                      ..+.+.+++..++.+++.+...|..++++.+..++++      ..++.++..+..|+.-++||.++|.+....|-.+.|+
T Consensus       100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~  173 (524)
T PF05977_consen  100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL  173 (524)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            3467888888899999999999999999999998755      7889999999999999999999999988899999999


Q ss_pred             HHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhh
Q 015223           93 VSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLD  172 (411)
Q Consensus        93 i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  172 (411)
                      +++++.++.++.+...++..   +++..+.+...+-+...+                                       
T Consensus       174 inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~---------------------------------------  211 (524)
T PF05977_consen  174 INALSFLISILALLRWKPPP---PPSSLPRERFFSALREGL---------------------------------------  211 (524)
T ss_pred             HHHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHH---------------------------------------
Confidence            99988776655444332211   111111111111000000                                       


Q ss_pred             hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHH-HHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccc
Q 015223          173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVP-IFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQS  251 (411)
Q Consensus       173 ~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~  251 (411)
                                       |.     +...+.+...+. .++..+.....+..+ +.+..+.  +  +.+   ....+.+..
T Consensus       212 -----------------ry-----v~~~~~l~~~l~~~~~~~l~~~a~~aLl-Pl~a~~~--l--~~~---a~~yGll~a  261 (524)
T PF05977_consen  212 -----------------RY-----VRSSPPLRSVLLRSFLFNLFASAVWALL-PLFARDV--L--GGG---ASGYGLLLA  261 (524)
T ss_pred             -----------------HH-----HhcchHHHHHHHHHHHHHHhhhHHHHhh-hHHHHHH--h--CCc---HHHHHHHHH
Confidence                             00     000111111111 111111111111111 1222211  1  111   011222333


Q ss_pred             hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHH
Q 015223          252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI  331 (411)
Q Consensus       252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l  331 (411)
                      .-++..++.+     ++.+..+|+      .+..+-+..+.++.+++++.+++..              +.+...+..++
T Consensus       262 ~~gvGai~Ga-----l~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~~--------------~~~~~~~~l~l  316 (524)
T PF05977_consen  262 AFGVGAILGA-----LLLPRLRRR------LSSRRLVLLASLLFALALLLLALSP--------------SFWLALIALFL  316 (524)
T ss_pred             HHHHHHHHHH-----HHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcch--------------HHHHHHHHHHH
Confidence            3334333333     333333332      2333445667777777777766642              55666778889


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          332 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       332 ~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      .|++.....+..++.+.+.+|++++|+.++++.+....+..+|+.+.+.+..
T Consensus       317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888999999999999999999998888888888887777644

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.33  E-value=8.7e-11  Score=117.17  Aligned_cols=268  Identities=12%  Similarity=0.108  Sum_probs=156.3

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++++++.+++.+ +.|...+.+.|.+++++      |+++.+++..+.++|..++|.+++++.+..+|++.|.+
T Consensus       105 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  177 (408)
T PRK09874        105 QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI  177 (408)
T ss_pred             hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            346778888899998865 46888888888887543      78899999999999999999999999998999999998


Q ss_pred             HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK  173 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  173 (411)
                      .++..++..+......+.-  .+|..++...                                            +.-+.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------------------------------------------~~~~~  211 (408)
T PRK09874        178 TASVLFLCFLVTLFCIREN--FQPVSKKEML--------------------------------------------HMREV  211 (408)
T ss_pred             HHHHHHHHHHHHHHHhccC--cccccchhhh--------------------------------------------HHHHH
Confidence            8876665554433221110  0011000000                                            00000


Q ss_pred             hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchh
Q 015223          174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIP  253 (411)
Q Consensus       174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in  253 (411)
                      .               +     ..++++....+   +.....+........+.+.....+...... ......+.+..+.
T Consensus       212 ~---------------~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~  267 (408)
T PRK09874        212 V---------------T-----SLKNPKLVLSL---FVTTLIIQVATGSIAPILTLYVRELAGNVS-NIAFISGMIASVP  267 (408)
T ss_pred             H---------------H-----hCcCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHH
Confidence            0               0     00011111111   111111111111111111111111000000 0000012223344


Q ss_pred             HHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHH
Q 015223          254 YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFG  333 (411)
Q Consensus       254 ~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~  333 (411)
                      .+..++..|+.+++.++..+|           +.+..+..+.+++++.....              .+.+.+....++.+
T Consensus       268 ~l~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g  322 (408)
T PRK09874        268 GVAALLSAPRLGKLGDRIGPE-----------KILITALIFSVLLLIPMSFV--------------QTPLQLGILRFLLG  322 (408)
T ss_pred             HHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHH
Confidence            455566677777766544322           22345555555555544432              13455556668889


Q ss_pred             HHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          334 LSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       334 ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      +++....+...+.+.+.+|++.+|..+|+++....+|..+|+.+.+.+..
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~  372 (408)
T PRK09874        323 AADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA  372 (408)
T ss_pred             hhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh
Confidence            99999888888888999999999999999999999999999999887643

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.33  E-value=6e-10  Score=111.39  Aligned_cols=82  Identities=11%  Similarity=0.054  Sum_probs=73.0

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++.+++++++.|...|...+++.|.+++++      |+++.++...+.|+|.++||.+++++.+++||++.|++
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  179 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA  179 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            467889999999999999999999999999997644      78999999999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q 015223           94 SAAAMALG  101 (411)
Q Consensus        94 ~~~~~~l~  101 (411)
                      .++..++.
T Consensus       180 ~~~l~~~~  187 (394)
T PRK10213        180 AAVMGVLC  187 (394)
T ss_pred             HHHHHHHH
Confidence            87554433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.30  E-value=8.8e-10  Score=108.46  Aligned_cols=89  Identities=15%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++.+.+++.+.+...|...++..+..++++ +   .+....++.+...++|..+||.+++++.++++|++.|++
T Consensus        85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~  160 (375)
T TIGR00899        85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG-R---EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLT  160 (375)
T ss_pred             chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-h---hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHH
Confidence            345666777777877778888888888888765432 1   122336788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 015223           94 SAAAMALGLFGVV  106 (411)
Q Consensus        94 ~~~~~~l~~i~~~  106 (411)
                      .++..++..+...
T Consensus       161 ~~~~~~~~~~~~~  173 (375)
T TIGR00899       161 AALAFVLCGVLVW  173 (375)
T ss_pred             HHHHHHHHHHHHH
Confidence            8876555544433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.30  E-value=8.7e-10  Score=108.21  Aligned_cols=261  Identities=10%  Similarity=0.023  Sum_probs=149.1

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc-------
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-------   86 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g-------   86 (411)
                      .+.+.++....+.+++.+...|...+++.|.+++++      |+.+.++...+.++|.++++.+++++.++.+       
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~  154 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT  154 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence            344555555666788888899999999999997544      7999999999999999999999999988888       


Q ss_pred             -chhHHHHHHHHHHHHHHHHhhcccceeccCCCCC-cc-hhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccc
Q 015223           87 -MDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS-IF-TPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVF  163 (411)
Q Consensus        87 -~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~-~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (411)
                       ||..|++.++..+++.+...+..++     |+.+ +. ++..                                     
T Consensus       155 ~wr~~f~i~ai~~l~~~~~~~~~~~e-----~~~~~~~~~~~~-------------------------------------  192 (356)
T TIGR00901       155 LWGYIFFWTALLILPGLLVTLFLAKE-----PQEDASVPKPLT-------------------------------------  192 (356)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccC-----CCcccccchhHH-------------------------------------
Confidence             9999998887666554443322221     1100 00 0000                                     


Q ss_pred             cccchhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCee
Q 015223          164 LTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFH  243 (411)
Q Consensus       164 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~  243 (411)
                          .+..+..+                    +....+....+..+.+....+...+.+..+.+.....+    .|    
T Consensus       193 ----~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g----  240 (356)
T TIGR00901       193 ----QAVLKPIR--------------------EFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD----MG----  240 (356)
T ss_pred             ----HHHHHHHH--------------------HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC----
Confidence                00000000                    00001110011122222222333333322222111111    12    


Q ss_pred             eCCcc---ccchhH-HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 015223          244 VPPAS---LQSIPY-IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKT  319 (411)
Q Consensus       244 i~~~~---l~~in~-l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~  319 (411)
                      .+++.   +..+.. +..++..++.+++.+++.+|           +.+..+.++.+++............+ .. .+ .
T Consensus       241 ~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~  306 (356)
T TIGR00901       241 FSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL-----------YALLLFGIVQALTNAGFVWLASNGHH-DG-IT-F  306 (356)
T ss_pred             CCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH-----------HHHHHHHHHHHHHHHHHHHHHhcCcc-cc-cc-c
Confidence            22332   233333 23445555656665544433           33566777776666655543210000 00 00 1


Q ss_pred             cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 015223          320 LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYS  368 (411)
Q Consensus       320 ~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~  368 (411)
                      .+.++++...++.++++.+..+...++..+.+|+++||.++|+.+...+
T Consensus       307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            2445567777889999999999999999999999999999999877654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.28  E-value=7.1e-10  Score=110.80  Aligned_cols=259  Identities=15%  Similarity=0.067  Sum_probs=149.1

Q ss_pred             HHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHHHH
Q 015223           20 FLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMA   99 (411)
Q Consensus        20 ~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~   99 (411)
                      ++.+.+++++.|+..|...+++.|.+++++      |.++.++.....++|..+||.++|++.+. .|+..|++.....+
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~  164 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL  164 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            567889999999999999999999998644      89999999999999999999999999884 47878877665544


Q ss_pred             HHHHHHhhcccceeccCCCCCcc-hhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhhhhhh
Q 015223          100 LGLFGVVSGTLYYRNKRPQGSIF-TPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKV  178 (411)
Q Consensus       100 l~~i~~~~~~~~~~~~~p~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~  178 (411)
                      ++.+....    +++.+++.++. .+..+.                                 .     .++.+..+.+ 
T Consensus       165 ~~~~~~~~----l~~~~~~~~~~~~~~~~~---------------------------------~-----~~~~~~~~~l-  201 (393)
T PRK11195        165 LAALFNLF----IPRLGARRPGQSWNPIAL---------------------------------L-----RDFFHACRVL-  201 (393)
T ss_pred             HHHHHHhc----CCCCcccccccCCCHHHH---------------------------------H-----HHHHHHHHHH-
Confidence            44332222    11111110000 000000                                 0     0000000000 


Q ss_pred             ccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhh---HHHHHHHHhhcccCCCCeeeCCccccchhHH
Q 015223          179 EDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQ---TFSVQQGSAMNNKLTKNFHVPPASLQSIPYI  255 (411)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~---s~~~~~~~~~~~~~g~g~~i~~~~l~~in~l  255 (411)
                                        .++++  ++.  .......+|.......   ..|.++..    +.+   ....+.+.....+
T Consensus       202 ------------------~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l----g~s---~~~~G~~~~~~~~  252 (393)
T PRK11195        202 ------------------WRDKL--GRF--SLAGTTLFWGAGATLRFLVLAWAPVAL----GIT---LNQPAYLQAVVAI  252 (393)
T ss_pred             ------------------HhCch--hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHc----CCC---hhHHHHHHHHHHH
Confidence                              01111  111  1111122233322221   12332221    111   0113344555556


Q ss_pred             HHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHH
Q 015223          256 MLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLS  335 (411)
Q Consensus       256 ~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ig  335 (411)
                      ..++..++.+++.    +|+       ...+.+..|. +.++..+.....              .+.++.+...++.+++
T Consensus       253 g~i~g~~~~~~l~----~~~-------~~~~~~~~g~-~~~~~~~~~~~~--------------~~~~~~~~~~~~~G~~  306 (393)
T PRK11195        253 GIAVGAGAAARLV----TLE-------TVLRVLPAGI-LMGLVVLLMALQ--------------HSLLPAYPLLILIGAL  306 (393)
T ss_pred             HHHHHHHHHHHHh----cCC-------cccchHHHHH-HHHHHHHHHHHH--------------hHHHHHHHHHHHHHHh
Confidence            6666666666543    222       1222344453 333333322221              2456666777889999


Q ss_pred             HHHHhhHHHHHHHHHhhhhH-HHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          336 EMFTAVGLIEFFYKQSLKGM-QAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       336 e~l~~~~~~~~~~~~aP~~~-~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ..+..++..+.+.+..|++. +|..+++.++.+.+|..++..+.+.+..
T Consensus       307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~  355 (393)
T PRK11195        307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK  355 (393)
T ss_pred             hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99988888888888777665 7999999999999999999988887643

>PRK10054 putative transporter; Provisional

Probab=99.27  E-value=1.3e-10  Score=116.09  Aligned_cols=263  Identities=12%  Similarity=0.073  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223           16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA   95 (411)
Q Consensus        16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~   95 (411)
                      .+.+++.+.+.+.+.+.+.|...+...|.+++++      |.+++++.+...|+|..+||.+++++.+ .+|+..|.+.+
T Consensus        96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~  168 (395)
T PRK10054         96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA  168 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence            4455566667777777888889999999987543      7999999999999999999999999875 79999999888


Q ss_pred             HHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhhh
Q 015223           96 AAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKAC  175 (411)
Q Consensus        96 ~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  175 (411)
                      +..+++++......++   .+|++++..+                  .                         .+ +. +
T Consensus       169 ~~~~i~~i~~~~~~~~---~~~~~~~~~~------------------~-------------------------~~-~~-~  200 (395)
T PRK10054        169 ICSAFPLVFIQIWVQR---SEKAIATETG------------------S-------------------------VW-SP-S  200 (395)
T ss_pred             HHHHHHHHHHHHHHhc---cccccccchh------------------h-------------------------hh-hh-h
Confidence            7766664433322211   1111100000                  0                         00 00 0


Q ss_pred             hhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchhHH
Q 015223          176 IKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYI  255 (411)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in~l  255 (411)
                                    +     -.++++.....+..++....+..... ....++....  +....   ....+.+..++.+
T Consensus       201 --------------~-----~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~--~~~~~---~~~~g~~~~~~~~  255 (395)
T PRK10054        201 --------------V-----LLQDKALLWFTCSGFLASFVSGAFAS-CISQYVMVVA--DSDFA---EKVVAVVLPVNAA  255 (395)
T ss_pred             --------------h-----hccCceehHHHHHHHHHHHHHHHhhh-hHHHHHHHhc--ccchH---HHHHHHHHHhhhh
Confidence                          0     00111111111111111111111111 1112221111  11110   0012234444544


Q ss_pred             HHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHH
Q 015223          256 MLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLS  335 (411)
Q Consensus       256 ~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ig  335 (411)
                      ..+...+..+++.+    |.       ++.+.+..|+++.++++.......             .+.+.+....++.++|
T Consensus       256 ~~~~~~~~~g~~~~----~~-------~~~~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g  311 (395)
T PRK10054        256 MVVSLQYSVGRRLN----AA-------NIRPLMTAGTLCFVIGLVGFIFSG-------------NSLLLWGMSAAVFTVG  311 (395)
T ss_pred             heeeehhHHHHHHc----cC-------CchhHHHHHHHHHHHHHHHHHHcc-------------hHHHHHHHHHHHHHHH
Confidence            44444555555442    22       223345677777777776665431             1344344566899999


Q ss_pred             HHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          336 EMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       336 e~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      |....|...+.+.+.+|++++|.+.|..+ ...+|..+|+.+++.+..
T Consensus       312 ~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~  358 (395)
T PRK10054        312 EIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT  358 (395)
T ss_pred             HHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence            99988888889999999999999988655 445788888877776643

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.27  E-value=1.1e-09  Score=108.73  Aligned_cols=80  Identities=18%  Similarity=0.147  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc--chhHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG--MDVGFG   92 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g--~~~~F~   92 (411)
                      +.+.+++++++.++|.+...|...+++.|.+++++      |.++++++..+.++|..+++.+++.+.+..+  |++.|.
T Consensus        99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~  172 (405)
T TIGR00891        99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF  172 (405)
T ss_pred             cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence            56778889999999999999999999999998644      7999999999999999999999999888766  999998


Q ss_pred             HHHHHHHH
Q 015223           93 VSAAAMAL  100 (411)
Q Consensus        93 i~~~~~~l  100 (411)
                      +.++...+
T Consensus       173 ~~~~~~~~  180 (405)
T TIGR00891       173 ISILPIIF  180 (405)
T ss_pred             HHHHHHHH
Confidence            76654433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.26  E-value=1.3e-09  Score=107.56  Aligned_cols=87  Identities=13%  Similarity=0.029  Sum_probs=74.6

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++++.+.+++.+...+...+++.|.+++++      |++++++.+...++|..+|+.+++++.++.+|++.|.+
T Consensus        91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  164 (385)
T TIGR00710        91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF  164 (385)
T ss_pred             ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            346678889999999999999999999999998543      79999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHh
Q 015223           94 SAAAMALGLFGVV  106 (411)
Q Consensus        94 ~~~~~~l~~i~~~  106 (411)
                      .++..++..+...
T Consensus       165 ~~~~~~~~~~~~~  177 (385)
T TIGR00710       165 LSLAGILLSALIF  177 (385)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.24  E-value=2e-09  Score=109.77  Aligned_cols=83  Identities=13%  Similarity=0.133  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc-cchhHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-GMDVGFGV   93 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~-g~~~~F~i   93 (411)
                      ....+++.+++++++.|...|...+.+.+.+++++      |.++.++++.+.++|..+++.+++++.+.+ +|++.|++
T Consensus       130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i  203 (465)
T TIGR00894       130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV  203 (465)
T ss_pred             CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence            35678889999999999999999999999998644      899999999999999999999999999884 99999998


Q ss_pred             HHHHHHHHHH
Q 015223           94 SAAAMALGLF  103 (411)
Q Consensus        94 ~~~~~~l~~i  103 (411)
                      .++..++..+
T Consensus       204 ~~~~~~~~~~  213 (465)
T TIGR00894       204 FGIVGCAWSL  213 (465)
T ss_pred             hhHHHHHHHH
Confidence            8765444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.23  E-value=2.3e-09  Score=106.30  Aligned_cols=80  Identities=23%  Similarity=0.213  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +...++++|+++++|.|.. +...+...+.+++++      |.++.++...+.++|..+++.+++++.+++|||+.|.+.
T Consensus        78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~  150 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI  150 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            6788999999999999964 555566688887533      899999999999999999999999999999999999886


Q ss_pred             HHHHHHH
Q 015223           95 AAAMALG  101 (411)
Q Consensus        95 ~~~~~l~  101 (411)
                      ++...+.
T Consensus       151 ~~l~~~~  157 (368)
T TIGR00903       151 AAVAAAG  157 (368)
T ss_pred             HHHHHHH
Confidence            6543333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.23  E-value=1.2e-09  Score=107.46  Aligned_cols=79  Identities=18%  Similarity=0.129  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh--------ccccch
Q 015223           17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMD   88 (411)
Q Consensus        17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~--------~~~g~~   88 (411)
                      ..+++++.++++|.|...+...+++.|.+++++      |+.+.++.+.+.++|.++++.+++.+.        +.++|+
T Consensus        97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~  170 (394)
T TIGR00883        97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR  170 (394)
T ss_pred             HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence            467889999999999999999999999998654      789999999999999999999887654        357999


Q ss_pred             hHHHHHHHHHHHH
Q 015223           89 VGFGVSAAAMALG  101 (411)
Q Consensus        89 ~~F~i~~~~~~l~  101 (411)
                      +.|.+.++..+++
T Consensus       171 ~~~~~~~~~~~~~  183 (394)
T TIGR00883       171 IPFLVSAVLVLIG  183 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998877654444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.22  E-value=1.1e-09  Score=107.30  Aligned_cols=85  Identities=13%  Similarity=-0.027  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh-hHHhhhhccccchhHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVAL-TVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~-~l~g~l~~~~g~~~~F~i   93 (411)
                      +.+.+++++.+.+++.|...|...+++.|.+++++      |++++++.....++|..+++ ++++.+.+..+|++.|.+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  155 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV  155 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence            56788899999999999999999999999998644      78899999999999999999 677778888999999988


Q ss_pred             HHHHHHHHHHHH
Q 015223           94 SAAAMALGLFGV  105 (411)
Q Consensus        94 ~~~~~~l~~i~~  105 (411)
                      .++..++..+..
T Consensus       156 ~~~~~~~~~~~~  167 (379)
T TIGR00881       156 PGIIAIIVSLIC  167 (379)
T ss_pred             HHHHHHHHHHHH
Confidence            776555443333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.21  E-value=1.4e-09  Score=109.39  Aligned_cols=78  Identities=13%  Similarity=0.107  Sum_probs=69.6

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++++.+.++|.|...+...+++.|.+++++      |.++.+++..+.++|.++++.+.+++.+.++|++.|++
T Consensus       104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            356788999999999999999999999999998644      78899999999999999999999999999999999988


Q ss_pred             HHHH
Q 015223           94 SAAA   97 (411)
Q Consensus        94 ~~~~   97 (411)
                      ..+.
T Consensus       178 ~~~~  181 (426)
T PRK12307        178 GLLP  181 (426)
T ss_pred             HHHH
Confidence            6543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.21  E-value=1.7e-09  Score=105.82  Aligned_cols=268  Identities=11%  Similarity=-0.013  Sum_probs=153.2

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++++.+.++|.|...+.....+.+.+++ +      |+++.+++..+.++|.++++.+.+.+.+..+|++.|++
T Consensus        89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~  161 (377)
T TIGR00890        89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY  161 (377)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence            3567788899999999998888888888888753 2      68899999999999998877777777777899999998


Q ss_pred             HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK  173 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  173 (411)
                      .++..++..+......+   + +|+..+.                  +.+.                 ... ...++.  
T Consensus       162 ~~~~~~~~~~~~~~~~~---~-~~~~~~~------------------~~~~-----------------~~~-~~~~~~--  199 (377)
T TIGR00890       162 MGIIFLLVIVLGAFLIG---Y-PPGQLIK------------------TNIE-----------------VSV-KDYTVW--  199 (377)
T ss_pred             HHHHHHHHHHHHHHhee---c-Cchhccc------------------cCcc-----------------cch-hhhhHH--
Confidence            87665554444332211   1 1110000                  0000                 000 000000  


Q ss_pred             hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchh
Q 015223          174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIP  253 (411)
Q Consensus       174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in  253 (411)
                                      +     -..++ ....+...+..   ....+......+....+  +.... .  -..+.+..+.
T Consensus       200 ----------------~-----~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~-~--~~~~~~~~~~  249 (377)
T TIGR00890       200 ----------------E-----MLRTP-QFWVLYLSFFL---NAVSGLLLIGLYKPYGQ--SLGLS-D--GFLVLAVSIS  249 (377)
T ss_pred             ----------------H-----HHcCc-cHHHHHHHHHH---HhHHHHHHHHHHHHHHH--HcCCC-H--HHHHHHHHHH
Confidence                            0     00111 11111111111   11111111111111111  11111 0  0123445666


Q ss_pred             HHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHH
Q 015223          254 YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFG  333 (411)
Q Consensus       254 ~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~  333 (411)
                      .+..++..++.+++.+++.+|+           .+.++.++.+++++......            ..+...+....++.+
T Consensus       250 ~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g  306 (377)
T TIGR00890       250 SIFNGGGRPFLGALSDKIGRQK-----------TMSIVFGISAVGMAAMLFIP------------MLNDVLFLATVALVF  306 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhh-----------hhhHHHHHHHHHHHHHHHcc------------cchhHHHHHHHHHHH
Confidence            6777777888888877665432           14566666777766555432            112222333345556


Q ss_pred             HHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          334 LSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       334 ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ++.....+....++.+..|++.|+.++|+.+....+|+.+++.+.+.+..
T Consensus       307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555554555678899999999999999999999999999999887643

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.21  E-value=3.8e-09  Score=105.40  Aligned_cols=78  Identities=13%  Similarity=0.130  Sum_probs=55.4

Q ss_pred             HHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHHHHHH
Q 015223           22 ALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG  101 (411)
Q Consensus        22 ~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~l~  101 (411)
                      ++.+.+.+ +...|...++..|..++++   | ......++...+.++|..+||.+++++.+++|||..|++.++..++.
T Consensus       112 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~  186 (393)
T PRK15011        112 GVFLSSFG-STANPQMFALAREHADKTG---R-EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVC  186 (393)
T ss_pred             HHHHHHHH-HhhHHHHHHHHHHHhhhcc---c-hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            34444444 4567788888877665432   1 12334478889999999999999999999999999999887655544


Q ss_pred             HHH
Q 015223          102 LFG  104 (411)
Q Consensus       102 ~i~  104 (411)
                      .+.
T Consensus       187 ~~~  189 (393)
T PRK15011        187 GVM  189 (393)
T ss_pred             HHH
Confidence            443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.18  E-value=2.8e-09  Score=120.48  Aligned_cols=267  Identities=14%  Similarity=0.045  Sum_probs=152.5

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc--------c-
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH--------S-   85 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~--------~-   85 (411)
                      +.+.+++.+++++++.|...|...+++.|.+++++      |.++++++.++.++|.++|+.+++++.+.        + 
T Consensus       102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~  175 (1146)
T PRK08633        102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL  175 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            46788899999999999999999999999998754      89999999999999999999999999775        2 


Q ss_pred             cchhHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccc
Q 015223           86 GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLT  165 (411)
Q Consensus        86 g~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (411)
                      +|.+.+.+..+...+..+++.+..+   +. |..++...                  +..              . ... 
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~------------------~~~--------------~-~~~-  217 (1146)
T PRK08633        176 GRIAPAGLVLLAVAVLGLIFAYRLP---KV-PAAAPEVF------------------DKK--------------K-YLF-  217 (1146)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcCc---CC-CCCCcccc------------------ccc--------------c-ccc-
Confidence            3334443333222222122222111   11 11100000                  000              0 000 


Q ss_pred             cchhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhH---HHHHHHHhhcccCCCCe
Q 015223          166 QRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQT---FSVQQGSAMNNKLTKNF  242 (411)
Q Consensus       166 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s---~~~~~~~~~~~~~g~g~  242 (411)
                      . .......+.                    +...+.+..   .++....++.......+   .+....      ++  .
T Consensus       218 ~-~~~~~~~~~--------------------l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~g--~  265 (1146)
T PRK08633        218 P-KLLWRNLKL--------------------LRSDRVLWL---AIIGLSYFWFISQLAQANFPAYAKEV------LG--L  265 (1146)
T ss_pred             H-HHHHHHHHH--------------------HhcCcHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHH------hC--C
Confidence            0 000000000                    000111111   11122222222221111   222211      11  1


Q ss_pred             ee--CCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCcc
Q 015223          243 HV--PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTL  320 (411)
Q Consensus       243 ~i--~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  320 (411)
                      ..  ..+.+..+..+..++...+.+++.    +|.       .....+.+|.++.+++++++...              .
T Consensus       266 s~~~~~g~~~~~~~ig~~~g~~~~g~l~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~--------------~  320 (1146)
T PRK08633        266 DNTFQVQYLLAASAIGIGIGSLLAGRLS----GRH-------IELGLVPLGALGLALSLFLLPTA--------------P  320 (1146)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHh----CCc-------eEccchhHHHHHHHHHHHHHHHh--------------h
Confidence            11  123444555555566666666554    332       11223456666666666665543              2


Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      +.++++...++.+++..+..+...+++.+.+|++.||.++|+.++...+|..+++.++..+.
T Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        321 SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777889999999998888889999999999999999999999888877776666543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.17  E-value=9.3e-09  Score=102.42  Aligned_cols=82  Identities=12%  Similarity=0.021  Sum_probs=68.7

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++.+.+.+++.+...+...++..|.+++++      +.++.++...+..+|..++|.+++++.++.||++.|++
T Consensus        94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~  167 (394)
T PRK11652         94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF  167 (394)
T ss_pred             ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            346778889999999999888888888888887533      67889999999999999999999999998999999998


Q ss_pred             HHHHHHHH
Q 015223           94 SAAAMALG  101 (411)
Q Consensus        94 ~~~~~~l~  101 (411)
                      .++...+.
T Consensus       168 ~~~~~~~~  175 (394)
T PRK11652        168 LLLLGAGV  175 (394)
T ss_pred             HHHHHHHH
Confidence            76554433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.16  E-value=1e-08  Score=104.75  Aligned_cols=84  Identities=19%  Similarity=0.096  Sum_probs=70.1

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh--------ccc
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THS   85 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~--------~~~   85 (411)
                      .....++++++++++|.|+..|...++++|.+++++      |++++++...+..+|.++++.+++++.        +.+
T Consensus       118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  191 (479)
T PRK10077        118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD  191 (479)
T ss_pred             hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence            345678899999999999999999999999999744      799999999999999999988776543        457


Q ss_pred             cchhHHHHHHHHHHHHHH
Q 015223           86 GMDVGFGVSAAAMALGLF  103 (411)
Q Consensus        86 g~~~~F~i~~~~~~l~~i  103 (411)
                      |||+.|.+.++..++..+
T Consensus       192 gWr~~f~~~~~~~~~~~~  209 (479)
T PRK10077        192 GWRYMFASEAIPALLFLM  209 (479)
T ss_pred             ChHHHHHHHHHHHHHHHH
Confidence            999999988766555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.15  E-value=5.6e-09  Score=105.43  Aligned_cols=85  Identities=16%  Similarity=0.191  Sum_probs=72.5

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHH---hhhhccccchhH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL---VWVQTHSGMDVG   90 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~---g~l~~~~g~~~~   90 (411)
                      .+.+.+++++.++++|.|...+...++++|.+++++      |.+++++++.+.++|.++++.++   +.+.+..+||+.
T Consensus       125 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~  198 (481)
T TIGR00879       125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP  198 (481)
T ss_pred             cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHH
Confidence            345688999999999999999999999999998654      79999999999999999999999   777778899999


Q ss_pred             HHHHHHHHHHHHHH
Q 015223           91 FGVSAAAMALGLFG  104 (411)
Q Consensus        91 F~i~~~~~~l~~i~  104 (411)
                      |++.++..++.++.
T Consensus       199 f~~~~~~~~~~~~~  212 (481)
T TIGR00879       199 LGLQLIPAGLLFLG  212 (481)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99976555444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.15  E-value=3.3e-09  Score=108.11  Aligned_cols=285  Identities=12%  Similarity=-0.001  Sum_probs=155.7

Q ss_pred             HHHHHH-HHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           16 ASIFFL-ALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        16 ~~~~~~-~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      ...+++ .+++.++|.|...+...+.+.+.++ ++      |.++.++.+.+.++|..++|.+++++.+.+||++.|++.
T Consensus       107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~  179 (455)
T TIGR00892       107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL  179 (455)
T ss_pred             HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            444443 4577899998765666678888884 22      789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223           95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA  174 (411)
Q Consensus        95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  174 (411)
                      ++..+++.+...+.++.-..  ++..+..+.            ...+.+.               ...+. ......+..
T Consensus       180 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~------------~~~~~~~---------------~~~~~-~~~~~~~~~  229 (455)
T TIGR00892       180 GGLLLHCCVCGALMRPVGPS--QRVSKSKSK------------EGLPPDG---------------STKKL-SKKSTAEKI  229 (455)
T ss_pred             HHHHHHHHHHHHHhCCCCcc--ccccccccc------------ccCCCCC---------------ccccc-cccchhhhh
Confidence            87766555444333221000  000000000            0000000               00000 000000000


Q ss_pred             hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchhH
Q 015223          175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPY  254 (411)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in~  254 (411)
                      .         ....++.     ..++ .+..   ...........+....+.+.....  +....   ....+.+.++..
T Consensus       230 ~---------~~~~~~~-----~~~~-~~~~---~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s---~~~~g~~~~~~~  286 (455)
T TIGR00892       230 N---------RFLDFSL-----FTHR-GFLV---YLSGNVIMFLGFFAPIIFLVPYAK--DKGVD---EYEAAFLLSIIG  286 (455)
T ss_pred             h---------hhcchHH-----hcCc-hHHH---HHHHHHHHHHHccchHHHHHHHHH--HcCCC---HHHHHHHHHHHH
Confidence            0         0000010     0111 1111   111111112222211111111111  11111   111334455566


Q ss_pred             HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhH--HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHH
Q 015223          255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQR--IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF  332 (411)
Q Consensus       255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k--~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~  332 (411)
                      +..++..|+.+++.++..         .+..++  +.+++++.++++++....              .+.++++...++.
T Consensus       287 ~~~~~~~~~~g~l~d~~~---------~~~~~~~~~~~~~~~~~l~~ll~~~~--------------~~~~~~~i~~~~~  343 (455)
T TIGR00892       287 FVDIFARPSCGLIAGLKW---------IRPHVQYLFSFALLFNGLTHLLCALA--------------GDYTGLVIYCIFF  343 (455)
T ss_pred             HHHHHHHHHHHHHhcccc---------cCHHHHHHHHHHHHHHHHHHHHHHHh--------------chHHHHHHHHHHH
Confidence            666777777776654211         111222  233444444444433321              2456667777899


Q ss_pred             HHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          333 GLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       333 ~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      +++.....+...+.+.+.+|++.+|..+|+.+....+|+.+|+.+.+.+..
T Consensus       344 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       344 GLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence            999988888888899999999999999999999999999999999997644

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.13  E-value=1.8e-08  Score=99.40  Aligned_cols=85  Identities=16%  Similarity=0.143  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++.+.+.+++.+...+...+++.|.+++++      |.+++++.+...++|..++|.+++++.++++|++.|.+.
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  151 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL  151 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            45677888999999999999999999999987644      799999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHH
Q 015223           95 AAAMALGLFGV  105 (411)
Q Consensus        95 ~~~~~l~~i~~  105 (411)
                      ++...+..+..
T Consensus       152 ~~~~~~~~~~~  162 (377)
T PRK11102        152 ALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHH
Confidence            76655554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.12  E-value=1.9e-08  Score=101.83  Aligned_cols=81  Identities=15%  Similarity=0.084  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++.+++.+++.|...|...+.+.+++++++      |++++++++.+.++|..+++.+++++.+++||++.|++.
T Consensus       110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~  183 (434)
T PRK11663        110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA  183 (434)
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            45667777888899999999999999999998644      799999999999999999999999999999999999987


Q ss_pred             HHHHHHH
Q 015223           95 AAAMALG  101 (411)
Q Consensus        95 ~~~~~l~  101 (411)
                      ++..++.
T Consensus       184 ~i~~~~~  190 (434)
T PRK11663        184 GIIAIVV  190 (434)
T ss_pred             HHHHHHH
Confidence            7654433

>PRK11043 putative transporter; Provisional

Probab=99.12  E-value=9.2e-09  Score=102.69  Aligned_cols=85  Identities=15%  Similarity=0.163  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++++.++++|.+...+...+++.|.+++++      +.+.++......++|..++|.+++++.++++|++.|++.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~  166 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL  166 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            56777888999999998888888899999998643      677888888999999999999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q 015223           95 AAAMALGLFGV  105 (411)
Q Consensus        95 ~~~~~l~~i~~  105 (411)
                      ++..++..+..
T Consensus       167 ~~~~~~~~~~~  177 (401)
T PRK11043        167 FAITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHHH
Confidence            76655554433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.12  E-value=2.5e-08  Score=102.58  Aligned_cols=75  Identities=12%  Similarity=0.048  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh--------ccccch
Q 015223           17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMD   88 (411)
Q Consensus        17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~--------~~~g~~   88 (411)
                      ..+.+.++++++|.|+..|...+++.+.+|+++      |+.+.++...+.++|..+|+.+..++.        .++|||
T Consensus       119 ~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR  192 (490)
T PRK10642        119 ILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR  192 (490)
T ss_pred             HHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH
Confidence            358899999999999999999999999998754      788889988888888888886655442        268999


Q ss_pred             hHHHHHHHH
Q 015223           89 VGFGVSAAA   97 (411)
Q Consensus        89 ~~F~i~~~~   97 (411)
                      +.|++.++.
T Consensus       193 ~~f~i~~~~  201 (490)
T PRK10642        193 IPFFIALPL  201 (490)
T ss_pred             HHHHHHHHH
Confidence            999987644

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.12  E-value=2.2e-08  Score=101.30  Aligned_cols=78  Identities=19%  Similarity=0.250  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh--------ccccc
Q 015223           16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGM   87 (411)
Q Consensus        16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~--------~~~g~   87 (411)
                      ...+++.|+++++|.|+..|...+++.|.+|+++      |+.+.++.+.+.+.|.++++.+.+.+.        +.+||
T Consensus       124 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  197 (432)
T PRK10406        124 PALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW  197 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence            4578899999999999999999999999998754      788999999999999999988766554        25899


Q ss_pred             hhHHHHHHHHHH
Q 015223           88 DVGFGVSAAAMA   99 (411)
Q Consensus        88 ~~~F~i~~~~~~   99 (411)
                      |+.|++.++..+
T Consensus       198 r~~F~i~~~~~l  209 (432)
T PRK10406        198 RIPFALGAVLAV  209 (432)
T ss_pred             HHHHHHHHHHHH
Confidence            999998765433

>TIGR00898 2A0119 cation transport protein

Probab=99.11  E-value=1.6e-08  Score=104.20  Aligned_cols=83  Identities=12%  Similarity=0.048  Sum_probs=69.5

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++++++.+++.|+..+...+++.|.+++++      |+.+.++...+.++|.++++.++.++.+   ||+.|++
T Consensus       178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~  248 (505)
T TIGR00898       178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLA  248 (505)
T ss_pred             ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Confidence            356788999999999999999999999999998654      7888999999999999999999877754   9999998


Q ss_pred             HHHHHHHHHHHH
Q 015223           94 SAAAMALGLFGV  105 (411)
Q Consensus        94 ~~~~~~l~~i~~  105 (411)
                      .++..++..+..
T Consensus       249 ~~i~~~~~~~~~  260 (505)
T TIGR00898       249 VSLPTFLFFLLS  260 (505)
T ss_pred             HHHHHHHHHHHH
Confidence            876655554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.11  E-value=2e-08  Score=100.37  Aligned_cols=77  Identities=14%  Similarity=0.151  Sum_probs=65.9

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc-cchhHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-GMDVGFG   92 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~-g~~~~F~   92 (411)
                      .+.+.++++++++++|.|...+...+.+.|.++ ++      |.++.+++..+.++|..+|+.+++++.++. +|+..|.
T Consensus        95 ~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~  167 (393)
T PRK09705         95 PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLA  167 (393)
T ss_pred             cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            356678899999999999999999999999886 33      688999999999999999999999998875 8998876


Q ss_pred             HHHHH
Q 015223           93 VSAAA   97 (411)
Q Consensus        93 i~~~~   97 (411)
                      +-++.
T Consensus       168 ~~~~~  172 (393)
T PRK09705        168 WWALP  172 (393)
T ss_pred             HHHHH
Confidence            65443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.10  E-value=1.5e-08  Score=100.64  Aligned_cols=84  Identities=6%  Similarity=-0.018  Sum_probs=71.8

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.+++++.+.+++.|...|...+++.|.+++++      |.++++++..+.++|..+||.+++++.+.++||+.|.+
T Consensus        89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            457888999999999999988988888998887533      67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 015223           94 SAAAMALGLF  103 (411)
Q Consensus        94 ~~~~~~l~~i  103 (411)
                      .++...+..+
T Consensus       163 ~~~~~~~~~~  172 (382)
T PRK10091        163 IAVFNIAVLA  172 (382)
T ss_pred             HHHHHHHHHH
Confidence            8865544433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.09  E-value=1.4e-08  Score=99.96  Aligned_cols=87  Identities=13%  Similarity=0.123  Sum_probs=77.3

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223           13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFG   92 (411)
Q Consensus        13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~   92 (411)
                      ..+...+.++|++.++..|.+.+...+...|..||++      |.++.++.+.+..++-.+|.-++.++.|.+|||..|+
T Consensus        98 Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~  171 (394)
T COG2814          98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL  171 (394)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence            4578899999999999999999999999999999866      8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 015223           93 VSAAAMALGLFGV  105 (411)
Q Consensus        93 i~~~~~~l~~i~~  105 (411)
                      +-++...++++..
T Consensus       172 ~ia~l~ll~~~~~  184 (394)
T COG2814         172 AIAVLALLALLLL  184 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            8775544444333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.09  E-value=9.1e-09  Score=104.58  Aligned_cols=279  Identities=10%  Similarity=0.107  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-ccchhHHHHHH
Q 015223           17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-SGMDVGFGVSA   95 (411)
Q Consensus        17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-~g~~~~F~i~~   95 (411)
                      +.+.+.|+++|++.|...|++..+.++..|+.+      |.++.++.+.+..+|.+++..++|++-++ .||+.+|++.+
T Consensus       129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g  202 (466)
T KOG2532|consen  129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG  202 (466)
T ss_pred             hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence            466889999999999999999999999999755      89999999999999999999999999998 99999999988


Q ss_pred             HHHHHHHHHHhhcccceeccCCCCCcchh--HHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223           96 AAMALGLFGVVSGTLYYRNKRPQGSIFTP--IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK  173 (411)
Q Consensus        96 ~~~~l~~i~~~~~~~~~~~~~p~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  173 (411)
                      +..++-.++++.   .+.+ .|+++|...  ..+.+......                          ..+.        
T Consensus       203 ~~g~i~~~~w~~---~~~d-~P~~h~~is~~El~~I~~~k~~--------------------------~~~~--------  244 (466)
T KOG2532|consen  203 IVGLIWFILWFL---FYSD-SPSKHPNISEKELKYIEKGKSE--------------------------AHVK--------  244 (466)
T ss_pred             HHHHHHHHHHHH---HhcC-CcccCCCCCHHHHHHHHhcccc--------------------------cccC--------
Confidence            654433333322   2333 355444321  11111000000                          0000        


Q ss_pred             hhhhhccCCCCCCCCcc-cccchhHHHHHHHHhHHHHHHHHHHHHHHH--hhhhHHHHHHHHhhcccCCCCeeeCCcccc
Q 015223          174 ACIKVEDGTNKKESPWR-LCTVTQVEQVKVLISVVPIFACTIIFNTIL--AQLQTFSVQQGSAMNNKLTKNFHVPPASLQ  250 (411)
Q Consensus       174 a~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~--~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~  250 (411)
                             .  ....||+ +++..      .++.+  .+....-.|..+  .|..++|..+..++|..       ..+++.
T Consensus       245 -------~--~~~vP~~~i~ts~------~vwai--~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~-------~~G~~s  300 (466)
T KOG2532|consen  245 -------K--KPPVPYKAILTSP------PVWAI--WISAFGGNWGFYLLLTYLPTYLKEVLGFDVR-------ETGFLS  300 (466)
T ss_pred             -------C--CCCCCHHHHHcCH------HHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHhCCChh-------hhhHHH
Confidence                   0  0012332 11111      11111  111112222222  23344665555433322       356667


Q ss_pred             chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHH--HHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223          251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRI--GFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ  328 (411)
Q Consensus       251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~--~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~  328 (411)
                      +++.+...+...+.+.+-+++.+| ..   +.+..+|+  .++....++.++.+++..        +    -.. |.  +
T Consensus       301 alP~l~~~~~k~~~g~lsD~l~~~-~l---s~t~~rkifn~i~~~~~ai~l~~l~~~~--------~----~~~-~~--a  361 (466)
T KOG2532|consen  301 ALPFLAMAIVKFVAGQLSDRLTFR-IL---SETTVRKIFNTIAFGGPAVFLLVLAFTS--------D----EHR-LL--A  361 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-cC---chHhHHHHHHhHHHHHHHHHHHeeeecC--------C----Ccc-hH--H
Confidence            788888888888888888887765 22   12344454  334444455555555442        1    011 22  3


Q ss_pred             HHHHHHHHHHHh--hHHHHHHHHHh-hhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          329 FLIFGLSEMFTA--VGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       329 ~~l~~ige~l~~--~~~~~~~~~~a-P~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      .++++++..+..  .+. -+...+- -|++.+..+|+.++...+...+++.+++.+.+
T Consensus       362 ~~~l~~~~~~~g~~~~G-f~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~  418 (466)
T KOG2532|consen  362 VILLTIAIGLSGFNISG-FYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT  418 (466)
T ss_pred             HHHHHHHHHHcccchhh-hHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence            355566666554  333 1233333 57788999999999999999999999998865

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.09  E-value=1.4e-08  Score=102.30  Aligned_cols=267  Identities=13%  Similarity=0.053  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh-------ccccch
Q 015223           16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ-------THSGMD   88 (411)
Q Consensus        16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~-------~~~g~~   88 (411)
                      ...+++...+.+++.+.+.+...++..+..++++  |   |.+..++.....++|.+++..+.+.+.       +..+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~  173 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR--E---RESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF  173 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence            4455556666788888888888888888876533  2   688899999999999888777655443       346899


Q ss_pred             hHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccch
Q 015223           89 VGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRF  168 (411)
Q Consensus        89 ~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (411)
                      +.|.+.++...+..++.....++    +++..+..                  ..                    .  +.
T Consensus       174 ~~~~i~~~l~~~~~~~~~~~~~e----~~~~~~~~------------------~~--------------------~--~~  209 (437)
T TIGR00792       174 MFALVLALIGVVSLIICFFGTKE----RYSEIPKN------------------IE--------------------K--KL  209 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEe----cCCCCCcc------------------cc--------------------c--CC
Confidence            99888776655554443332221    11100000                  00                    0  00


Q ss_pred             hhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCcc
Q 015223          169 RFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPAS  248 (411)
Q Consensus       169 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~  248 (411)
                      +..+..+..                   .+++ .+..+   .......+..+........+..   ...++ . .-..++
T Consensus       210 ~~~~~~~~l-------------------~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~-~~~~~~  261 (437)
T TIGR00792       210 SLKQIFKAL-------------------FKND-QLLIL---CLAYLFYNLAFNIKNGVQVYYF---TYVLG-D-PELFSY  261 (437)
T ss_pred             CHHHHHHHH-------------------hCCH-HHHHH---HHHHHHHHHHHHHHcchhheeE---eeecC-C-hHHHHH
Confidence            000000000                   0111 11111   1122222222221111111100   01111 0 001223


Q ss_pred             ccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223          249 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ  328 (411)
Q Consensus       249 l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~  328 (411)
                      +..+..+..++..|+.+++.+++.+|           +.+..|.++.+++++...+..             .+.++++..
T Consensus       262 ~~~~~~i~~ii~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~  317 (437)
T TIGR00792       262 MGSIAIVAGLIGVLLFPRLVKKFGRK-----------ILFAGGILLMVLGYLIFFFAG-------------SNLPLILVL  317 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHcc-------------hhHHHHHHH
Confidence            44555666777788888776554433           234667777777776665431             134455666


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhh-------hhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          329 FLIFGLSEMFTAVGLIEFFYKQSL-------KGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       329 ~~l~~ige~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      .++.+++.....+...+++.+.+|       ++.+|.++|++++...+|+.+|+.+.+.+-.
T Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       318 IILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899998888777788888766       6778999999999999999999999887644

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.08  E-value=2.9e-08  Score=106.13  Aligned_cols=84  Identities=15%  Similarity=0.122  Sum_probs=68.1

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc----------
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH----------   84 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~----------   84 (411)
                      +.+.+++++++.++|.|+..|...+++.+.++++.      |+..+++..+...+|.++++.++.++..+          
T Consensus       254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~  327 (742)
T TIGR01299       254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA  327 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence            46788899999999999999999999999998633      78899999999999999999877665433          


Q ss_pred             ---ccchhHHHHHHHHHHHHHHH
Q 015223           85 ---SGMDVGFGVSAAAMALGLFG  104 (411)
Q Consensus        85 ---~g~~~~F~i~~~~~~l~~i~  104 (411)
                         .+||+.|++.++..++.++.
T Consensus       328 ~~~~gWR~l~~i~~lp~ll~ll~  350 (742)
T TIGR01299       328 YQFHSWRVFVIVCAFPCVFAIGA  350 (742)
T ss_pred             cccccHHHHHHHHHHHHHHHHHH
Confidence               36889888877655544443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09952 shikimate transporter; Provisional

Probab=99.08  E-value=7.5e-08  Score=97.67  Aligned_cols=75  Identities=9%  Similarity=0.100  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh--------ccccch
Q 015223           17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMD   88 (411)
Q Consensus        17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~--------~~~g~~   88 (411)
                      ..+.+.|.++++|.|+..|...+++.+.+|+++      |+.+.+....+.++|.+++..+..++.        +++|||
T Consensus       126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr  199 (438)
T PRK09952        126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR  199 (438)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence            367889999999999999999999999998744      788888888999999998887776654        358999


Q ss_pred             hHHHHHHHH
Q 015223           89 VGFGVSAAA   97 (411)
Q Consensus        89 ~~F~i~~~~   97 (411)
                      +.|++.++.
T Consensus       200 ~~f~~~~~~  208 (438)
T PRK09952        200 IPFLFSIVL  208 (438)
T ss_pred             HHHHHHHHH
Confidence            999987754

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.08  E-value=3.3e-08  Score=99.48  Aligned_cols=85  Identities=9%  Similarity=0.052  Sum_probs=72.2

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+...+++++++++++.+...+...+.+.|.+++++      |.++++++..+.++|..+||.+++++.++.||++.|++
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            456788999999999998777777788889988644      68889999999999999999999999998999999998


Q ss_pred             HHHHHHHHHHH
Q 015223           94 SAAAMALGLFG  104 (411)
Q Consensus        94 ~~~~~~l~~i~  104 (411)
                      .++..+++.+.
T Consensus       176 ~~~~~~i~~~~  186 (413)
T PRK15403        176 IAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHH
Confidence            88766655544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.07  E-value=3.1e-08  Score=98.57  Aligned_cols=85  Identities=19%  Similarity=0.112  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +...+++++.+++++.+...+...+++.|.+++++      |.+++++.+...++|..++|.+++++.+..+|++.|.+.
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence            45667888999999999999999999999998644      799999999999999999999999998889999999988


Q ss_pred             HHHHHHHHHHH
Q 015223           95 AAAMALGLFGV  105 (411)
Q Consensus        95 ~~~~~l~~i~~  105 (411)
                      ++..++..+..
T Consensus       164 ~~~~~i~~~~~  174 (392)
T PRK10473        164 AAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHHH
Confidence            76655554443

>PRK03699 putative transporter; Provisional

Probab=99.05  E-value=8.7e-08  Score=95.63  Aligned_cols=84  Identities=8%  Similarity=0.054  Sum_probs=68.9

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh-ccccchhHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ-THSGMDVGFG   92 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~-~~~g~~~~F~   92 (411)
                      .+.+.+++.+.+.+++.|...+...+.+.+.+++++      |..+.+..+...++|..++|.+.+++. ++.+||+.|.
T Consensus        93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~  166 (394)
T PRK03699         93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA  166 (394)
T ss_pred             chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            356778889999999999999999999999997533      788888888999999999999988875 4679999999


Q ss_pred             HHHHHHHHHHH
Q 015223           93 VSAAAMALGLF  103 (411)
Q Consensus        93 i~~~~~~l~~i  103 (411)
                      +.++..++..+
T Consensus       167 ~~~~~~~~~~~  177 (394)
T PRK03699        167 CIGLVYVAIFI  177 (394)
T ss_pred             HHHHHHHHHHH
Confidence            87765544433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.05  E-value=5.2e-08  Score=100.35  Aligned_cols=86  Identities=13%  Similarity=0.101  Sum_probs=73.2

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc-cccchhHH
Q 015223           13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT-HSGMDVGF   91 (411)
Q Consensus        13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~-~~g~~~~F   91 (411)
                      ..+.+.+++.+.+.+++.+...+...++..|.+++++      |.++.++..++.++|.++++.+++++.+ ..|||..|
T Consensus       104 ~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f  177 (491)
T PRK11010        104 GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMY  177 (491)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence            4456778888889999999999999999999998644      7889999999999999999999999988 57999999


Q ss_pred             HHHHHHHHHHHHH
Q 015223           92 GVSAAAMALGLFG  104 (411)
Q Consensus        92 ~i~~~~~~l~~i~  104 (411)
                      ++.++..++..+.
T Consensus       178 ~i~a~l~ll~~l~  190 (491)
T PRK11010        178 WLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988765555443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.05  E-value=4e-08  Score=97.52  Aligned_cols=72  Identities=10%  Similarity=0.020  Sum_probs=59.5

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGF   91 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F   91 (411)
                      .+.+.+++++++.+++.|...|...+.+.+..++++      |++++++++.+.++|..+|+.+++++.+...+...+
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  163 (381)
T PRK03633         92 VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW  163 (381)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence            356788899999999999999988888888876533      789999999999999999999999998754443333

>PRK15075 citrate-proton symporter; Provisional

Probab=99.04  E-value=6.7e-08  Score=97.82  Aligned_cols=73  Identities=11%  Similarity=0.048  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh--------ccccchh
Q 015223           18 IFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMDV   89 (411)
Q Consensus        18 ~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~--------~~~g~~~   89 (411)
                      .++++++++++|.|...|+..+++.|.+|+++      |+++.+++....++|..+++.+++.+.        +.+|||+
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~  192 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI  192 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence            56889999999999999999999999998755      899999999988888888888877662        4689999


Q ss_pred             HHHHHHH
Q 015223           90 GFGVSAA   96 (411)
Q Consensus        90 ~F~i~~~   96 (411)
                      .|++..+
T Consensus       193 ~f~~~~~  199 (434)
T PRK15075        193 PFLIGCL  199 (434)
T ss_pred             HHHHHHH
Confidence            9987543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.03  E-value=1.2e-07  Score=96.43  Aligned_cols=83  Identities=17%  Similarity=0.129  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH-HHHhhHHhhhhccccchhHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGE-LVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~-~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      +.+.+++.+.+.+++.|...|.....+.+++++++      |.+++++++.+.++|. +++|+++..+....+|++.|++
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i  192 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM  192 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence            46677888899999999999988889999987644      7999999999999986 5566654434334599999998


Q ss_pred             HHHHHHHHHH
Q 015223           94 SAAAMALGLF  103 (411)
Q Consensus        94 ~~~~~~l~~i  103 (411)
                      .++..++..+
T Consensus       193 ~~~~~~~~~~  202 (452)
T PRK11273        193 PAFAAILVAL  202 (452)
T ss_pred             HHHHHHHHHH
Confidence            8765554433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.03  E-value=1.7e-08  Score=103.65  Aligned_cols=77  Identities=16%  Similarity=0.090  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++++.+.+++.+...+...+++.|.+++++      |.+++++++.+.++|..+++.+++++.++++|++.|++.
T Consensus       107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~  180 (496)
T PRK03893        107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG  180 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            56778899999999999999999999999998633      788999999999999999999999999999999999875


Q ss_pred             HHH
Q 015223           95 AAA   97 (411)
Q Consensus        95 ~~~   97 (411)
                      .+.
T Consensus       181 ~~~  183 (496)
T PRK03893        181 ILP  183 (496)
T ss_pred             HHH
Confidence            543

>TIGR00896 CynX cyanate transporter

Probab=99.02  E-value=1.1e-07  Score=93.43  Aligned_cols=260  Identities=14%  Similarity=0.124  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc--chhHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG--MDVGFG   92 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g--~~~~F~   92 (411)
                      +...+++++++.++|.|...+...+.+.|.+++ +      |.++++++..+.++|..+++.+++++.++.+  |++.|.
T Consensus        86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~  158 (355)
T TIGR00896        86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA  158 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            456677889999999999888888888888752 2      6889999999999999999999999877653  899887


Q ss_pred             HHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhh
Q 015223           93 VSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLD  172 (411)
Q Consensus        93 i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  172 (411)
                      +.++..++....++   .+.++ +++.++                   +..                 ..          
T Consensus       159 ~~~~~~~~~~~~~~---~~~~~-~~~~~~-------------------~~~-----------------~~----------  188 (355)
T TIGR00896       159 WWALPALLALLAWI---PQVRR-RVAANQ-------------------TTT-----------------RL----------  188 (355)
T ss_pred             HHHHHHHHHHHHHh---hhhcc-ccCCCC-------------------CCC-----------------CC----------
Confidence            66544333322211   11011 000000                   000                 00          


Q ss_pred             hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHH-HHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccc
Q 015223          173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFA-CTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQS  251 (411)
Q Consensus       173 ~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~-~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~  251 (411)
                                    ..++.     ..++ ........+. ....++...... +.+.+ .    .+..   ....+.+.+
T Consensus       189 --------------~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~l-p~~~~-~----~g~~---~~~~g~~~~  239 (355)
T TIGR00896       189 --------------TPVRI-----WRSP-LAWQVTVFFGLQSGLYYSLIGWL-PAILI-S----HGAS---AATAGSLLA  239 (355)
T ss_pred             --------------CCchh-----hcCH-hHHHHHHHHHHHHHHHHHHHHHH-HHHHH-H----cCCC---HHHHHHHHH
Confidence                          00000     0112 1111111111 112222222222 12221 1    1111   011334455


Q ss_pred             hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHH
Q 015223          252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI  331 (411)
Q Consensus       252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l  331 (411)
                      +..+..++..++.+++.++..+|          .+.+..+..+.+++++.+....             ....+.  ..++
T Consensus       240 ~~~~~~i~~~~~~g~l~dr~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~l  294 (355)
T TIGR00896       240 LMQLAQAASALLIPALARRVKDQ----------RGIVAVLAVLQLVGLCGLLFAP-------------MHGLWA--WALV  294 (355)
T ss_pred             HHHHHHHHHHHhHHHHHhhhccc----------hHHHHHHHHHHHHHHHHHHHhh-------------hhHHHH--HHHH
Confidence            55666677777777765443211          1223556677777766665542             111121  2467


Q ss_pred             HHHHHHHHhhHHHHHHHHHh-hhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223          332 FGLSEMFTAVGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT  385 (411)
Q Consensus       332 ~~ige~l~~~~~~~~~~~~a-P~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s  385 (411)
                      .++++....+...+.+.+.. |++.++..+|+.+....+|+.+|+.+.+.+...+
T Consensus       295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999888877666665554 5678899999988888888889998888776544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00897 2A0118 polyol permease family

Probab=99.02  E-value=1.2e-07  Score=94.86  Aligned_cols=75  Identities=13%  Similarity=0.051  Sum_probs=61.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH-HHHhhHHhhhhccccchhHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGE-LVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~-~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      +...+++.+.+.++|.+...+...+.+.+.+++++      |+++.+++..+.++|. .+||.+++++.+.+||+..++.
T Consensus       104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            45667788889999998888888888888887643      8999999999999996 6899999999988897655554


Q ss_pred             HH
Q 015223           94 SA   95 (411)
Q Consensus        94 ~~   95 (411)
                      ..
T Consensus       178 ~~  179 (402)
T TIGR00897       178 AL  179 (402)
T ss_pred             HH
Confidence            43

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.99  E-value=6.6e-10  Score=109.44  Aligned_cols=88  Identities=22%  Similarity=0.108  Sum_probs=78.5

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc-chhHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFG   92 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g-~~~~F~   92 (411)
                      ...+++.+.|.++++|.+...|...++++|.|++++      |++.|++||+++++|+.+|.+.+.++.+..+ |||+|.
T Consensus       119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~  192 (493)
T KOG1330|consen  119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR  192 (493)
T ss_pred             HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence            567899999999999999999999999999999755      8999999999999999999999999988766 999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 015223           93 VSAAAMALGLFGVVS  107 (411)
Q Consensus        93 i~~~~~~l~~i~~~~  107 (411)
                      ..+++.++..++.++
T Consensus       193 ~~avl~vi~~~L~~~  207 (493)
T KOG1330|consen  193 GSAVLGVIVGLLVFL  207 (493)
T ss_pred             eehHHHHHHHHHHHh
Confidence            998777766655444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.98  E-value=1.4e-07  Score=94.83  Aligned_cols=82  Identities=12%  Similarity=0.036  Sum_probs=69.8

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc------cccc
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT------HSGM   87 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~------~~g~   87 (411)
                      .+...+++++.+++++.|...|...+++.+.+++++      |+++.+++..+.++|..+++.+++++.+      ..||
T Consensus        94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw  167 (412)
T TIGR02332        94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGW  167 (412)
T ss_pred             cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch
Confidence            346788899999999999999999999999998533      7899999999999999999999998864      4799


Q ss_pred             hhHHHHHHHHHHHH
Q 015223           88 DVGFGVSAAAMALG  101 (411)
Q Consensus        88 ~~~F~i~~~~~~l~  101 (411)
                      |+.|.+.++..++.
T Consensus       168 r~~f~~~~~~~l~~  181 (412)
T TIGR02332       168 QWLFLLEGFPSVIL  181 (412)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999876554433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.97  E-value=7.3e-08  Score=98.49  Aligned_cols=81  Identities=9%  Similarity=-0.028  Sum_probs=68.8

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc---cchhH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS---GMDVG   90 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~---g~~~~   90 (411)
                      .+...+++.+.+++++.|...|...+.+.+.+++++      |+++++++..+.++|..+++.+..++.+..   +|+..
T Consensus       120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~  193 (467)
T PRK09556        120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM  193 (467)
T ss_pred             chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence            467888999999999999999999999999999755      799999999999999999999988776643   68888


Q ss_pred             HHHHHHHHHH
Q 015223           91 FGVSAAAMAL  100 (411)
Q Consensus        91 F~i~~~~~~l  100 (411)
                      |.+.++..++
T Consensus       194 f~~~g~~~~~  203 (467)
T PRK09556        194 FIFPSIIALI  203 (467)
T ss_pred             HHHHHHHHHH
Confidence            8876654443

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.95  E-value=3e-08  Score=99.76  Aligned_cols=112  Identities=11%  Similarity=0.107  Sum_probs=82.1

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +.+.+++.+...+..++.+++.+++.+|           +.+..+.++.+++++...+.              .++++++
T Consensus       265 g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~l~~~~~~l~~~~--------------~~~~~~~  319 (420)
T PRK09528        265 GYLNSFQVFLEALIMFFAPFIINRIGAK-----------NALLLAGTIMAVRIIGSGFA--------------TGPLEVS  319 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHhc--------------ccHHHHH
Confidence            4556666666777788888877655443           22566777777777766653              2566777


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHH-HHHHHhHHHHHHhHhhhhhcc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM-TYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~-~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ...++.+++.....+...+++.+..|++.++...+. +++...+|+.+++.+.+.+..
T Consensus       320 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~  377 (420)
T PRK09528        320 ILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD  377 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence            778899998888777777889999999999887655 667788899998888887644

>TIGR01272 gluP glucose/galactose transporter

Probab=98.94  E-value=2.3e-07  Score=89.78  Aligned_cols=85  Identities=15%  Similarity=-0.004  Sum_probs=70.3

Q ss_pred             cccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-----
Q 015223           10 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-----   84 (411)
Q Consensus        10 ~~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-----   84 (411)
                      .+...+.+.+.+++.+++.|.+...+..++++++.-++++      +.+..++......+|+++||++++.+...     
T Consensus         4 ~~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~   77 (310)
T TIGR01272         4 AASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDL   77 (310)
T ss_pred             hHHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch
Confidence            3445678999999999999999999999999999988755      57789999999999999999999987631     


Q ss_pred             -----------ccchhHHHHHHHHHHH
Q 015223           85 -----------SGMDVGFGVSAAAMAL  100 (411)
Q Consensus        85 -----------~g~~~~F~i~~~~~~l  100 (411)
                                 ..|++.|++-+....+
T Consensus        78 ~~~~~~~~~~~~~~~~~yl~ia~~~~~  104 (310)
T TIGR01272        78 SMQVATANAEAAKVHTPYLLLAGALAV  104 (310)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence                       4788999855544333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.91  E-value=1.1e-07  Score=94.93  Aligned_cols=267  Identities=8%  Similarity=-0.012  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHHH
Q 015223           19 FFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAM   98 (411)
Q Consensus        19 ~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~   98 (411)
                      +.++.++.+++.+...|...++..|.-++        +...++......|+|..+||.++|.+.+ ++|++.|++.++..
T Consensus       102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~  172 (396)
T TIGR00882       102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFA  172 (396)
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHH
Confidence            44556677788888888887776653211        2446788889999999999999998876 69999999887665


Q ss_pred             HHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhhhhhh
Q 015223           99 ALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKV  178 (411)
Q Consensus        99 ~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~  178 (411)
                      ++..+..+...    +++|+++...+              ..+.+ .                ..+.    .-+..    
T Consensus       173 ~~~~~~~~~~~----~~~~~~~~~~~--------------~~~~~-~----------------~~~~----~~~~~----  209 (396)
T TIGR00882       173 LILMLLLMFAK----PKAPSSATVAN--------------ALGAN-A----------------SAFS----LKLAL----  209 (396)
T ss_pred             HHHHHHHHHhC----CCCchhhhhhc--------------ccccc-c----------------CCCC----HHHHH----
Confidence            55543333211    11111100000              00000 0                0000    00000    


Q ss_pred             ccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchhHHHHH
Q 015223          179 EDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLV  258 (411)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in~l~il  258 (411)
                                      +-..+++ +..++.........+...++..+.|...... +...+  . -..+.+.++..+...
T Consensus       210 ----------------~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~--~-~~~g~~~~~~~i~~~  268 (396)
T TIGR00882       210 ----------------ELFRQRK-FWMFVLYVVGVACVYDVFDQQFANFFTSFFA-TPQQG--T-RVFGYVTTMGELLNA  268 (396)
T ss_pred             ----------------HHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccc--h-HHHHHHHHHHHHHHH
Confidence                            0001121 1122121111111122222222333222110 01111  0 012334555555566


Q ss_pred             HHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHH
Q 015223          259 ILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMF  338 (411)
Q Consensus       259 l~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l  338 (411)
                      +..+..+++.++..+|           +-+.+|.++.++++......              .+.+++.+..++.+++...
T Consensus       269 ~~~~~~g~l~~r~g~~-----------~~l~~~~~l~~l~~~~~~~~--------------~~~~~~~~~~~l~g~~~~~  323 (396)
T TIGR00882       269 LIMFCAPLIINRIGAK-----------NALLIAGTIMSVRIIGSSFA--------------TTALEVVILKMLHAFEVPF  323 (396)
T ss_pred             HHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHHHHH
Confidence            6666666665444332           22467777777766554432              3577777788899998877


Q ss_pred             HhhHHHHHHHHHhhhhHHHHHHHH-HHHHHhHHHHHHhHhhhhhcc
Q 015223          339 TAVGLIEFFYKQSLKGMQAFLTAM-TYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       339 ~~~~~~~~~~~~aP~~~~g~~~g~-~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ......+++.+..|++.++...+. ++....+|+.+++.+.+.+..
T Consensus       324 ~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~  369 (396)
T TIGR00882       324 LLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD  369 (396)
T ss_pred             HHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence            765565777788888888776655 567888888888887776644

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.90  E-value=2.5e-07  Score=94.23  Aligned_cols=299  Identities=10%  Similarity=0.027  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhh--hccc---------
Q 015223           17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV--QTHS---------   85 (411)
Q Consensus        17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l--~~~~---------   85 (411)
                      ..+.+++.+.-++....++...++++|.+++++++    ++.+++++....|+|..+|+.++++.  .+.+         
T Consensus       115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~  190 (477)
T TIGR01301       115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG  190 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence            45566676777788888899999999999976532    46899999999999999999999875  2211         


Q ss_pred             ----cchhHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCc
Q 015223           86 ----GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGS  161 (411)
Q Consensus        86 ----g~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (411)
                          +.+..|++.++.++++.++..+..|+.+..+++..+..               .++..       +          
T Consensus       191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~---------------~~~~~-------~----------  238 (477)
T TIGR01301       191 VSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS---------------EAAPP-------S----------  238 (477)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---------------hcccc-------c----------
Confidence                66889999998888887776665444321011100000               00000       0          


Q ss_pred             cccccchhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH-hhcccCCC
Q 015223          162 VFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGS-AMNNKLTK  240 (411)
Q Consensus       162 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~-~~~~~~g~  240 (411)
                       .+... ..   .+.+           ++..+    +-.|.+.+++..-.+.-+-|..+.+..|.|+-++. +-+..-.+
T Consensus       239 -~~~~~-~~---~~~i-----------~~~~~----~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~  298 (477)
T TIGR01301       239 -KHGEE-AF---FGEL-----------FGAFK----YLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA  298 (477)
T ss_pred             -ccchh-hh---HHHH-----------HHHHH----HCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh
Confidence             00000 00   0000           00000    01122223333334444445555555556554431 10100000


Q ss_pred             ----CeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHH-HHhHHHHHHHHHHHHHHHHHhhh--h-
Q 015223          241 ----NFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRI-GFGLFLATFSMISAALMEKKRRD--S-  312 (411)
Q Consensus       241 ----g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~-~~G~~l~~l~~~~~~~~~~~~~~--~-  312 (411)
                          |... ..+-..+|.+...+..-++.++    .||.       ...++. .++.++.++|++...++.....+  . 
T Consensus       299 ~y~~gvr~-G~~~l~~~s~~~~i~s~~l~~l----~~~~-------g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~  366 (477)
T TIGR01301       299 KYDDGVRA-GAFGLMLNSVVLGITSIGMEKL----CRGW-------GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY  366 (477)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHh-------ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence                1000 1222334444433333333333    3332       111222 78888999999988877531110  0 


Q ss_pred             cccCC---Cccc-hHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhhh--hHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223          313 ALDSG---KTLS-IFSITPQFLIFGLSEMFTA-VGLIEFFYKQSLK--GMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  384 (411)
Q Consensus       313 ~~~~~---~~~s-~~~li~~~~l~~ige~l~~-~~~~~~~~~~aP~--~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~  384 (411)
                      ...++   .+.. .+..+..+.+.|++-.... ++- +++.+..|+  +.+|.+||+.+++..+.+.+.++..+.+...
T Consensus       367 ~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPf-al~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~  444 (477)
T TIGR01301       367 DGDGESLPPPTGIKASALIVFAILGIPLAITYSIPF-ALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQL  444 (477)
T ss_pred             cccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhH-HHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000   0112 3556677788888888887 555 799999995  5669999999999999999999887775443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.90  E-value=2.8e-07  Score=93.43  Aligned_cols=85  Identities=13%  Similarity=0.068  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhh-hhccccchhHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVW-VQTHSGMDVGFGV   93 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~-l~~~~g~~~~F~i   93 (411)
                      +...+++.+.+.+++.|...|.....+.|.+++++      |++++++++.+.++|..+++.+.++ +.++.+||..|++
T Consensus       117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~  190 (438)
T TIGR00712       117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF  190 (438)
T ss_pred             hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence            35566788889999999999999999999998655      7999999999999999999887775 4455799999999


Q ss_pred             HHHHHHHHHHHH
Q 015223           94 SAAAMALGLFGV  105 (411)
Q Consensus        94 ~~~~~~l~~i~~  105 (411)
                      .++..++..+..
T Consensus       191 ~~~~~~i~~~~~  202 (438)
T TIGR00712       191 PAICAIIVALFA  202 (438)
T ss_pred             HHHHHHHHHHHH
Confidence            877665544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.88  E-value=5.3e-07  Score=90.22  Aligned_cols=84  Identities=15%  Similarity=0.086  Sum_probs=68.7

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-ccchhHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-SGMDVGFG   92 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-~g~~~~F~   92 (411)
                      .+.+.+++...+.++..+...|...+++.|.+++++      |.++.++..++.++|..+++.+++++.+. +||+..|+
T Consensus        92 ~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~  165 (402)
T PRK11902         92 AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL  165 (402)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence            345556666666788899999999999999987654      79999999999999999999999998885 59999999


Q ss_pred             HHHHHHHHHHH
Q 015223           93 VSAAAMALGLF  103 (411)
Q Consensus        93 i~~~~~~l~~i  103 (411)
                      +.++...+..+
T Consensus       166 i~a~~~l~~~l  176 (402)
T PRK11902        166 LMAGLMLAGAL  176 (402)
T ss_pred             HHHHHHHHHHH
Confidence            88766554433

>PRK09848 glucuronide transporter; Provisional

Probab=98.87  E-value=4.9e-07  Score=91.87  Aligned_cols=105  Identities=11%  Similarity=0.087  Sum_probs=77.6

Q ss_pred             HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223          255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL  334 (411)
Q Consensus       255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i  334 (411)
                      +..++..|+.+++.+++.           ..+.+.+|.++.+++++.+.+..            ..+.+++....++.++
T Consensus       275 ~~~~~~~~l~~~l~~r~g-----------~~~~~~~g~~~~~i~~~~~~~~~------------~~~~~~~~~~~~l~g~  331 (448)
T PRK09848        275 VGTVASAPLVPGMVARIG-----------KKNTFLIGALLGTCGYLLFFWVS------------VWSLPVALVALAIASI  331 (448)
T ss_pred             HHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHHHHcC------------chhHHHHHHHHHHHHH
Confidence            445556676666554332           23446778888888777665431            2356666677889999


Q ss_pred             HHHHHhhHHHHHHHHHhhhh-------HHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          335 SEMFTAVGLIEFFYKQSLKG-------MQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       335 ge~l~~~~~~~~~~~~aP~~-------~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      |+.+..+...++..+.+|++       .+|.++|++++.+.+|..+|+.+.+.+-
T Consensus       332 G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        332 GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888999988865       4699999999999999999999887653

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.86  E-value=2e-07  Score=94.21  Aligned_cols=269  Identities=13%  Similarity=0.014  Sum_probs=162.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc-------cc
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-------GM   87 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~-------g~   87 (411)
                      ....+.+...+..++...+.....++..|..+++++     |.+..++.....++|.++...+.+.+.+..       +|
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~  176 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY  176 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence            334456677777999999999999999999987553     677888888888888876666665543221       68


Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccc
Q 015223           88 DVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQR  167 (411)
Q Consensus        88 ~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (411)
                      ++.+.+.++...++.++.....|+-.++.++.++.                                             
T Consensus       177 ~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~---------------------------------------------  211 (428)
T PF13347_consen  177 RWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKK---------------------------------------------  211 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeccccccccccc---------------------------------------------
Confidence            88877777666655555555444300000000000                                             


Q ss_pred             hhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCc
Q 015223          168 FRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPA  247 (411)
Q Consensus       168 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~  247 (411)
                      .++.+..+              .++     ++++ ..   .++......+.......+...+..+.   .++  .+-..+
T Consensus       212 ~~~~~~~~--------------~~~-----~nr~-~~---~l~~~~~~~~~~~~~~~~~~~y~~~~---vl~--~~~~~~  263 (428)
T PF13347_consen  212 ISLRDSLR--------------SLF-----RNRP-FR---ILLLAFFLQWLAFALMNTFLPYYFTY---VLG--NEGLIS  263 (428)
T ss_pred             cccccchh--------------hhc-----ccch-HH---HHHHHHHHHHhhhhhhhhHHHHHHHH---Hhc--CchhhH
Confidence            00000000              000     1221 11   22222233333333222222221111   111  010123


Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      .+..+..+..++..|+..++.+++++|+           -+..|.++.+++.++..+..            +.+.+++.+
T Consensus       264 ~~~~~~~~~~~v~~~~~~~l~~r~gk~~-----------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~i  320 (428)
T PF13347_consen  264 IFMLIFFVASIVGSPLWGRLSKRFGKKK-----------VYIIGLLLAALGFLLLFFLG------------PGSPWLVLI  320 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccee-----------ehhhhHHHHHHHHHHHHHHH------------hhhHHHHHH
Confidence            3344555667778888887776655442           25678888888888877763            247888888


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhh-------hhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSL-------KGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  384 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~  384 (411)
                      ..++.+++-...+....++..+..+       ++..|.++|++.+..-+|..+++.+.+.+-..
T Consensus       321 ~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  321 LFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             HHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999988666678888777       45689999999999999999999888866443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.85  E-value=8.2e-08  Score=93.96  Aligned_cols=284  Identities=13%  Similarity=0.062  Sum_probs=159.1

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHH--hhhhccccchhHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL--VWVQTHSGMDVGFG   92 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~--g~l~~~~g~~~~F~   92 (411)
                      +.+.+.+-..+.+.-.|.--|.....++..|++++      |++..++...+-|+|..+.|.++  +++..+.+|+.+|+
T Consensus       116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~  189 (448)
T COG2271         116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY  189 (448)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence            67778888888999999999999999999999755      89999999999999999999999  99999999999999


Q ss_pred             HHHHHHH-HHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhh
Q 015223           93 VSAAAMA-LGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFL  171 (411)
Q Consensus        93 i~~~~~~-l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  171 (411)
                      ++++..+ ++++.+...    ++ .|+..-+.++-            ++.+++.+.++.++           ..+.++.-
T Consensus       190 ~pgiiaiival~~~~~~----rd-~Pqs~GLP~ie------------~~~~d~~e~~~~~~-----------~~~~ls~~  241 (448)
T COG2271         190 FPGIIAIIVALILLFLL----RD-RPQSEGLPPIE------------EYRGDPLEIYEEEK-----------ENEGLTAW  241 (448)
T ss_pred             HHHHHHHHHHHHHHHHh----CC-CccccCCCCHH------------HhhcCchhhhhhhc-----------cCCCccHH
Confidence            9986544 333333333    22 34432222210            00111111110000           00000000


Q ss_pred             hhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHH--hhhhHHHHHHHHhhcccCCCCeeeCCccc
Q 015223          172 DKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTIL--AQLQTFSVQQGSAMNNKLTKNFHVPPASL  249 (411)
Q Consensus       172 ~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~--~q~~s~~~~~~~~~~~~~g~g~~i~~~~l  249 (411)
                      +...                   +-|-..|.++.  +.+....+|..=|  .++.+.|+.+.++++.       ....+.
T Consensus       242 ~i~~-------------------~YVL~Nk~iW~--la~a~vfvYivR~gi~dW~p~YL~e~k~~s~-------~~a~~a  293 (448)
T COG2271         242 QIFV-------------------KYVLKNKLIWL--LALANVFVYVVRYGINDWGPLYLSEVKGFSL-------VKANWA  293 (448)
T ss_pred             HHHH-------------------HHHHcChHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCH-------HHHHHH
Confidence            0000                   00111111111  1111112222212  3566788887665543       223333


Q ss_pred             cchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhH-HHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223          250 QSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL-FLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ  328 (411)
Q Consensus       250 ~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~  328 (411)
                      .++-...-+...-+.+++.+++.+.++       .+.  ++.. ++..+++......        +    ..+.+  +..
T Consensus       294 ~~lfE~agl~G~Ll~GwlSDklfkgrR-------~p~--~~i~~~~i~~~~~~~w~~--------~----~~~~~--l~~  350 (448)
T COG2271         294 ISLFEVAGLPGTLLAGWLSDKLFKGRR-------GPM--ALIFMLLITASLVLYWLA--------P----NGSYL--LDA  350 (448)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccc-------chH--HHHHHHHHHHHHHHHHcC--------C----CccHH--HHH
Confidence            444445566666677888888875432       111  2221 2222222222221        1    12222  222


Q ss_pred             HHHHHHHHHHHhhHHH--HHHHHHhhhhHHHHHHHHHHHHHhH-HHHHHhHhhhhhcc
Q 015223          329 FLIFGLSEMFTAVGLI--EFFYKQSLKGMQAFLTAMTYCSYSF-GFYLSSLLVSFVNK  383 (411)
Q Consensus       329 ~~l~~ige~l~~~~~~--~~~~~~aP~~~~g~~~g~~~l~~~~-G~~lg~~l~~~~~~  383 (411)
                      -.+..+|-.+.-|.+.  ..+.+.+||+.-|.+.|+..++.-+ |..++....+.+..
T Consensus       351 ~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d  408 (448)
T COG2271         351 ILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD  408 (448)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence            3444555555433321  2466789999999999999988877 88888777776633

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.81  E-value=1.8e-06  Score=89.17  Aligned_cols=80  Identities=14%  Similarity=0.104  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc------------
Q 015223           16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT------------   83 (411)
Q Consensus        16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~------------   83 (411)
                      ...++++++++++|.|+..|....++.+.+|++.      |+++.++.+...++|.++++.++.++..            
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~  188 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE  188 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            5688999999999999999999999999999755      8999999999999999999988876531            


Q ss_pred             -----------cccchhHHHHHHHHHHHH
Q 015223           84 -----------HSGMDVGFGVSAAAMALG  101 (411)
Q Consensus        84 -----------~~g~~~~F~i~~~~~~l~  101 (411)
                                 .++||+.|.+.++..++.
T Consensus       189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~  217 (502)
T TIGR00887       189 ASCTGSCVPAVDYMWRILIGFGAVPALLA  217 (502)
T ss_pred             ccccccccchhcccHHHHHHHHHHHHHHH
Confidence                       247999998776554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10133 L-fucose transporter; Provisional

Probab=98.79  E-value=7.8e-07  Score=90.30  Aligned_cols=64  Identities=19%  Similarity=0.198  Sum_probs=51.9

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh
Q 015223           13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ   82 (411)
Q Consensus        13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~   82 (411)
                      ..+...++++++++++|.|...+..++++.|..++++      |....+++.....+|..+|+.+++.+.
T Consensus       114 a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999998644322      455688888888999999998887654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=1e-07  Score=92.40  Aligned_cols=93  Identities=24%  Similarity=0.139  Sum_probs=82.5

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223           13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFG   92 (411)
Q Consensus        13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~   92 (411)
                      ..+.++++++|.++++|.+....+..++++|.|+++..     |++++++.-..+.+|.++||..+|.+-|..|++..|+
T Consensus       156 g~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFl  230 (464)
T KOG3764|consen  156 GNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFL  230 (464)
T ss_pred             cchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHH
Confidence            45678999999999999999999999999999998663     7999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccc
Q 015223           93 VSAAAMALGLFGVVSGTL  110 (411)
Q Consensus        93 i~~~~~~l~~i~~~~~~~  110 (411)
                      +.+..+++...+-++..+
T Consensus       231 VL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  231 VLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             HHHHHHHHHHHHHHheeC
Confidence            999887777665555433

>PRK09669 putative symporter YagG; Provisional

Probab=98.79  E-value=1.4e-06  Score=88.47  Aligned_cols=106  Identities=9%  Similarity=0.154  Sum_probs=70.4

Q ss_pred             HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223          255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL  334 (411)
Q Consensus       255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i  334 (411)
                      +..++..|+.+++.+++.+|           +.+..+.++.+++.+...+..            +.+.+.+++..++.++
T Consensus       275 i~~ii~~~~~~~l~~r~gk~-----------~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~i~g~  331 (444)
T PRK09669        275 IAGLFGALLSERLLGKFDRV-----------RAFKWTIVAFVILSALIFFIP------------PSNVWLIFALNILFNF  331 (444)
T ss_pred             HHHHHHHHHHHHHHHHhChH-----------HHHHHHHHHHHHHHHHHHHhC------------cchHHHHHHHHHHHHH
Confidence            44455666767766554433           223445544443333333221            1245556666789999


Q ss_pred             HHHHHhhHHHHHHHHHhh-------hhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          335 SEMFTAVGLIEFFYKQSL-------KGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       335 ge~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ++....+...+++.+.+|       ++..|...|++.+...+|+.+|+.+++.+-.
T Consensus       332 ~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        332 IQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888889988886       4557888999999999999999888886533

>TIGR00788 fbt folate/biopterin transporter

Probab=98.76  E-value=8.8e-08  Score=98.06  Aligned_cols=290  Identities=14%  Similarity=0.096  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223           16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA   95 (411)
Q Consensus        16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~   95 (411)
                      .....+.+.+.+++.+...+...++..|..+ ++++   .+....++.|...++|.++|+.++|++.++++|+..|++.+
T Consensus       120 ~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a  195 (468)
T TIGR00788       120 AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITA  195 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence            3444457888999999999999999999998 4432   25668889999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhhh
Q 015223           96 AAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKAC  175 (411)
Q Consensus        96 ~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  175 (411)
                      +..++..+...+.++.-....|+..  .+..                .    +.          .....    ...+..+
T Consensus       196 ~l~ll~~~~~~~~~E~~~~~~~~~~--~~~~----------------~----~~----------~~~~~----~~~~~~~  239 (468)
T TIGR00788       196 ALLLLQLFVSNLSKERRAFVRPRIG--TYLE----------------M----NM----------ALLTL----GVLANVK  239 (468)
T ss_pred             HHHHHHHHHHHhccccccccccccc--ccch----------------h----hh----------hhhhh----hHHHHHH
Confidence            7766553333322111000001100  0000                0    00          00000    0000000


Q ss_pred             hhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHH-HHHHHhhhhHHHHHHHHhhcccCCCCeeeCC---ccccc
Q 015223          176 IKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTII-FNTILAQLQTFSVQQGSAMNNKLTKNFHVPP---ASLQS  251 (411)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~-~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~---~~l~~  251 (411)
                      ....       ..++      .-.++.+.+.+.+   ... |........+.+..+.    ..+|    .++   +.+..
T Consensus       240 ~~~~-------~l~~------~l~~~~i~~~l~f---ifl~~~~~~~~~~~~f~~~~----~~lG----~s~~~~G~~~~  295 (468)
T TIGR00788       240 VQIL-------GLRG------AIQLLEIAKPLIF---IFLSYANLPGASGSVFCATT----QCLP----GGPSFSGMSKV  295 (468)
T ss_pred             HHHH-------HHHH------HHhcHHHHHHHHH---HHHHHhhcCCCCceeEEEEc----ccCC----CCcchhhhHHH
Confidence            0000       0000      0001122221111   111 1111111111111100    1122    222   23344


Q ss_pred             hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHH
Q 015223          252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI  331 (411)
Q Consensus       252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l  331 (411)
                      ...+..++.+.+.+++.    +|       .+..+-+.++.++.+++.+....... |-+.  ..+ ..+.++.....++
T Consensus       296 ~~~v~~i~g~~~~~~~~----~~-------~~~r~~l~~~~~l~~~~~~~~~~l~~-~~~~--~~g-i~~~~~~~~~~~l  360 (468)
T TIGR00788       296 VGNLGSLCGVGGYDRFL----KT-------FPYRLLFGVTTLLYTLSSLFDLILVK-RWNL--AFG-ISDEVFVLGDSII  360 (468)
T ss_pred             HHHHHHHHHHHHHHHHH----hh-------CCHHHHHHHHHHHHHHHHhCceeeee-cccc--ccC-CCCeeeeeehhHH
Confidence            44455666666666553    33       24444467777777776655432210 1110  001 0123345555678


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223          332 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  384 (411)
Q Consensus       332 ~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~  384 (411)
                      .+++..+...+...++.+.+|++.+|...|+.....++|+.+++.+++.+...
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888877789999999999999999999999999999999888877654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.75  E-value=5.1e-07  Score=88.54  Aligned_cols=76  Identities=18%  Similarity=0.092  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc----------c
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT----------H   84 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~----------~   84 (411)
                      +.+.+++++++++++.+.. +...++++|.+++++      |.++.+++....++|..+++.+++.+..          +
T Consensus        90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            5677888999999997765 557889999998644      7889999998889999888888876654          3


Q ss_pred             ccchhHH-HHHHHH
Q 015223           85 SGMDVGF-GVSAAA   97 (411)
Q Consensus        85 ~g~~~~F-~i~~~~   97 (411)
                      .+|++.| .+.++.
T Consensus       163 ~~w~~~~~~~~~~~  176 (366)
T TIGR00886       163 LAWGWAFVIVPAGI  176 (366)
T ss_pred             ccccchhHHHHHHH
Confidence            4899999 443433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.73  E-value=2e-06  Score=89.44  Aligned_cols=320  Identities=11%  Similarity=-0.038  Sum_probs=167.8

Q ss_pred             ccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhH
Q 015223           11 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVG   90 (411)
Q Consensus        11 ~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~   90 (411)
                      +...+...+..|..+.++|.|... .....++|..+.+.      |..++.+..+..-+....|+.++..+..+.+|||.
T Consensus       126 atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~  198 (599)
T PF06609_consen  126 ATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWI  198 (599)
T ss_pred             hcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchH
Confidence            345567788999999999987765 45666899987533      55556555555545555677777666667899999


Q ss_pred             HHHHHHHHHHHHHHHhhccccee--ccCCCCCcc------hhHHHHHHHHHHhhcccCCCC-Cc-cccccCCCCCCCCCC
Q 015223           91 FGVSAAAMALGLFGVVSGTLYYR--NKRPQGSIF------TPIAQVFVAAMLKRKQICPSN-PQ-MLHGLNQNNVPNDSG  160 (411)
Q Consensus        91 F~i~~~~~~l~~i~~~~~~~~~~--~~~p~~~~~------~~~~~v~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~  160 (411)
                      |++..+...++++..++.++.-.  +.+.++.+.      .|..+.+...........+.. .. .-+.|.         
T Consensus       199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~---------  269 (599)
T PF06609_consen  199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWK---------  269 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCC---------
Confidence            99999888887765544332111  111111111      234555544444322211111 00 011222         


Q ss_pred             ccccccchhh--hhhhhhhhcc--CC-C---CCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 015223          161 SVFLTQRFRF--LDKACIKVED--GT-N---KKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGS  232 (411)
Q Consensus       161 ~~~~~~~~~~--l~~a~~~~~~--~~-~---~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~  232 (411)
                         ......-  +..+..+.+.  +. .   +-..+++++     +|++. +..  ..+...++-+.|......|.++..
T Consensus       270 ---Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf-----~~~r~-~~~--~lvi~fi~G~~~~s~~~l~p~~~~  338 (599)
T PF06609_consen  270 ---SAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLF-----KDRRG-FAA--LLVISFISGMNFFSVNILWPQQVV  338 (599)
T ss_pred             ---CccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHh-----ccchH-HHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence               1111111  1111111110  00 0   011233333     22222 211  112222233334444345555544


Q ss_pred             hhccc-CCCCeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhh
Q 015223          233 AMNNK-LTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRD  311 (411)
Q Consensus       233 ~~~~~-~g~g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~  311 (411)
                      ++-.+ .. +. ....++.....+...+.+.+++.+..+. ||         ....+.+|.++..+++..++...     
T Consensus       339 ~vf~~d~~-~~-~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~---------~Kw~li~~~~~~ta~~Gama~~~-----  401 (599)
T PF06609_consen  339 NVFGSDPI-SI-TEIGWISSPVGFGSCAGAVILGLLFSKI-RH---------IKWQLIFGSVLMTAFCGAMAAVR-----  401 (599)
T ss_pred             hhccCCCc-cc-ceeehhhhhHHHHHHHHHHHHHHHHHHc-cc---------hhHHHHHHHHHHHHHHHHHHHcc-----
Confidence            33211 10 11 1233444555566666666666655332 22         23446678777776666666543     


Q ss_pred             hcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          312 SALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       312 ~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                        +++   .+.+|  ..-++.++|-..+....+..+.-.+|++..|.++|+....+.+|+.+|..+...+
T Consensus       402 --~~n---~~~~i--~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  402 --PDN---KNAAI--AFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             --CCC---cchHH--HHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence              111   22222  2235777777777755556666679999999999999999999999999877643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.70  E-value=7.7e-06  Score=81.37  Aligned_cols=58  Identities=10%  Similarity=0.055  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhh-hHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLK-GMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~-~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ....++.+++..+..+..+....+..++ +.+|..+++.+...++|..+|+.+.+.+..
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~  365 (390)
T TIGR02718       307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD  365 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333455566677777777777888876 899999999999999999999999887654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.65  E-value=4e-06  Score=85.95  Aligned_cols=115  Identities=10%  Similarity=0.019  Sum_probs=77.0

Q ss_pred             ccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223          249 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ  328 (411)
Q Consensus       249 l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~  328 (411)
                      +..++.+..++..|+.+++.+++.+|           +.+.++.++.+++.+.....-.     ..    +.+.++++..
T Consensus       271 ~~~~~~i~~ii~~~~~~~l~~r~gkk-----------~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~i~  330 (473)
T PRK10429        271 YLSYAGAANLVTLILFPRLVKSLSRR-----------ILWAGASIFPVLSCGVLLLMGL-----AA----PHNALLIVIA  330 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHhc-----cC----chhHHHHHHH
Confidence            34455566677777777766544433           2244566655555554433210     00    1245556666


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhh-------hhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          329 FLIFGLSEMFTAVGLIEFFYKQSL-------KGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       329 ~~l~~ige~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      .++.++++....+...++..+.+|       ++..|.+.|.+.+..-+|..+|+.+.+.+-.
T Consensus       331 ~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        331 GILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999998777788999888       5667889999999999999999888887643

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.64  E-value=2.6e-06  Score=87.36  Aligned_cols=83  Identities=11%  Similarity=-0.014  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc---------cc
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT---------HS   85 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~---------~~   85 (411)
                      +...+++.+++++++.+...+ ....+.+.+++++      |+.+.++.+...|+|..+++.+.+.+..         ..
T Consensus       123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~  195 (476)
T PLN00028        123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT  195 (476)
T ss_pred             CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence            456777888999999887644 4567889997644      7999999998889988888777765532         25


Q ss_pred             cchhHHHHHHHHHHHHHHH
Q 015223           86 GMDVGFGVSAAAMALGLFG  104 (411)
Q Consensus        86 g~~~~F~i~~~~~~l~~i~  104 (411)
                      |||+.|.+.++..++..+.
T Consensus       196 gWr~~f~i~g~l~l~~~l~  214 (476)
T PLN00028        196 AWRIAFFVPGLLHIIMGIL  214 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            8999999887665544333

>TIGR00889 2A0110 nucleoside transporter

Probab=98.63  E-value=4e-06  Score=84.53  Aligned_cols=116  Identities=13%  Similarity=0.106  Sum_probs=81.5

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +...+++.+..++...+.+++.+++.+|           +-+.++.++.++++........         . ..+.+.++
T Consensus       254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~v~~~l~~~~~~---------~-~~~~~~l~  312 (418)
T TIGR00889       254 SIWMSLSQFSEIFFILTIPFFLKRFGIK-----------KVMLLSLVAWALRFGFFAYGDP---------E-YFGYALLF  312 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHcCc---------c-hhhHHHHH
Confidence            3345555666666666677766554433           3356777777777655554210         0 11234455


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH-HHHhHHHHHHhHhhhhhcc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY-CSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~-l~~~~G~~lg~~l~~~~~~  383 (411)
                      ...++.++++.+..+....++.+..|++.||.++|+.+ ...++|+.+|+.+.+.+..
T Consensus       313 l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~  370 (418)
T TIGR00889       313 LSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVE  370 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            66789999999988887789999999999999999997 5688999999999987644

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.61  E-value=1.4e-05  Score=78.49  Aligned_cols=274  Identities=13%  Similarity=0.121  Sum_probs=152.9

Q ss_pred             ccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhH
Q 015223           11 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVG   90 (411)
Q Consensus        11 ~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~   90 (411)
                      +.........++.++.++|.+.-.....++..|..+|++      |.++-++.|...-+|..++..+.|.+-+.++..-.
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL  157 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL  157 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence            444455666777778888889999999999999998755      89999999999999999999999988776664332


Q ss_pred             HHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhh
Q 015223           91 FGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRF  170 (411)
Q Consensus        91 F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (411)
                      .-+.-...++.+++-+....   +.||+.++..               ..+                      +.+...+
T Consensus       158 ~~v~~~~a~i~~~l~~ia~w---g~E~r~~~~~---------------~~~----------------------~~~~~~f  197 (403)
T PF03209_consen  158 IQVIQGVALIALLLNLIALW---GQEPRRSRRA---------------AAA----------------------ERPRPPF  197 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---hcccCCcccc---------------cCC----------------------CCCCccH
Confidence            22222111112221111111   1122211100               000                      0000111


Q ss_pred             hhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCC--eeeCCcc
Q 015223          171 LDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN--FHVPPAS  248 (411)
Q Consensus       171 l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g--~~i~~~~  248 (411)
                      .+......               .+  .+.++++.+  +++...-|    .       .|.--+.+ .+ |  |.++++.
T Consensus       198 ~~a~~~~~---------------~~--~~a~~f~~f--l~l~t~a~----~-------~QD~iLEP-yg-g~Vfgmsv~e  245 (403)
T PF03209_consen  198 REAWRQVW---------------AS--PQARRFFVF--LFLGTLAF----F-------MQDVILEP-YG-GEVFGMSVGE  245 (403)
T ss_pred             HHHHHHHH---------------hC--CChhHHHHH--HHHHHHHH----H-------hhHHHcCC-ch-hHHcCCCHHH
Confidence            11111110               01  112222211  11111111    1       11111111 12 1  3455554


Q ss_pred             ccchhH---HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          249 LQSIPY---IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       249 l~~in~---l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      -..+|.   ...++...+.+++..   +|.       .+.+.-..|..+.++++........           .-+.+-+
T Consensus       246 TT~Lta~~~~G~L~G~~~~g~~l~---~~~-------~~~~~a~~G~~~~~~~f~lii~a~~-----------~~~~~~~  304 (403)
T PF03209_consen  246 TTRLTAFWGGGTLLGMLLAGFLLS---RRL-------GKKRTAALGCLLGALAFALIILAGP-----------LGSPWLF  304 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc---CCC-------CchHHHHHHHHHHHHHHHHHHHHHh-----------cccchHH
Confidence            333333   334454445555443   221       1112223566666666655444321           1256667


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      .+..+++|+|-.+...+..+...+.++++..|.++|.|...++++.-+|..+++...-
T Consensus       305 ~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  305 RPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999999988887777777776543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.57  E-value=2.2e-05  Score=78.95  Aligned_cols=82  Identities=12%  Similarity=0.137  Sum_probs=66.6

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc---------
Q 015223           13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT---------   83 (411)
Q Consensus        13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~---------   83 (411)
                      ..+.+.+++++++.++|.|...+..++.+.+..++++      |.+..++.....++|..+||.+++.+..         
T Consensus        91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            3467888999999999999999999999998876543      5777899999999999999999987742         


Q ss_pred             -----------------cccchhHHHHHHHHHHH
Q 015223           84 -----------------HSGMDVGFGVSAAAMAL  100 (411)
Q Consensus        84 -----------------~~g~~~~F~i~~~~~~l  100 (411)
                                       ..+||+.|++.++..++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~  198 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLA  198 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             24699999877754443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.45  E-value=7.8e-06  Score=86.77  Aligned_cols=88  Identities=15%  Similarity=0.044  Sum_probs=73.6

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc---------
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS---------   85 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~---------   85 (411)
                      ...+++++++++++|.+...|...+++.|.+++++      |..++++++.+.++|..+|+++++++.+.+         
T Consensus       171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~  244 (633)
T TIGR00805       171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE  244 (633)
T ss_pred             eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence            35678899999999999999999999999998755      799999999999999999999999987643         


Q ss_pred             -------------cchhHHHHHHHHHHHHHHHHhhc
Q 015223           86 -------------GMDVGFGVSAAAMALGLFGVVSG  108 (411)
Q Consensus        86 -------------g~~~~F~i~~~~~~l~~i~~~~~  108 (411)
                                   +|+.+|++.++..++..+.++..
T Consensus       245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                         27888988887666655544443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.44  E-value=6.6e-06  Score=79.66  Aligned_cols=71  Identities=7%  Similarity=0.038  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccccCCCCCCCC
Q 015223          323 FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWL  394 (411)
Q Consensus       323 ~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s~~~~~~~w~  394 (411)
                      ..+.....+.++.-....+.+..++.+..|++.||..+|+.....+++.++||++.+....++ ++++..|+
T Consensus       353 ~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws-~~~~~a~~  423 (451)
T KOG2615|consen  353 VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS-QGAQPAYI  423 (451)
T ss_pred             hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe-cCCCceee
Confidence            345566788899999999999999999999999999999999999999999999998766654 33444443

>PRK11462 putative transporter; Provisional

Probab=98.40  E-value=0.00013  Score=74.59  Aligned_cols=85  Identities=13%  Similarity=0.067  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-------ccchh
Q 015223           17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-------SGMDV   89 (411)
Q Consensus        17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-------~g~~~   89 (411)
                      ..+++...+..++.-.+.....++..+..++.+  |   |.+..++.....++|.++++.+...+.+.       .+|+.
T Consensus       110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~  184 (460)
T PRK11462        110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQG  184 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence            334445555678888888889999999987644  2   78899999999999988887776544332       24666


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 015223           90 GFGVSAAAMALGLFGVV  106 (411)
Q Consensus        90 ~F~i~~~~~~l~~i~~~  106 (411)
                      ...+.++...++..+..
T Consensus       185 ~~~i~~ii~~i~~~i~~  201 (460)
T PRK11462        185 GIAVLSVVAFMMLAFCF  201 (460)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55554444444433333

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.35  E-value=7.1e-05  Score=76.03  Aligned_cols=87  Identities=14%  Similarity=0.022  Sum_probs=63.4

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh-----c-----
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ-----T-----   83 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~-----~-----   83 (411)
                      .+...+++.+++.+++ |...+.....+.+.|++++      |+++++++....|+|..+++.+.+.+.     .     
T Consensus       126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~  198 (462)
T PRK15034        126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN  198 (462)
T ss_pred             CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4678899999999998 6677889999999998654      799999998888888887777666533     2     


Q ss_pred             --------cccchhHHHHHHHHHHHHHHHHhh
Q 015223           84 --------HSGMDVGFGVSAAAMALGLFGVVS  107 (411)
Q Consensus        84 --------~~g~~~~F~i~~~~~~l~~i~~~~  107 (411)
                              ..+|+.++.+-.+..++..+.+++
T Consensus       199 ~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        199 GVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    234666665555555555444444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.13  E-value=6.3e-05  Score=75.64  Aligned_cols=109  Identities=12%  Similarity=0.051  Sum_probs=87.9

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      ++.+...+...+..++.+++.+++++|+           -+..++++.+++.+..++.              .+.+++..
T Consensus        47 ~~~s~~~~~~~~~~~~~g~l~dr~G~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~  101 (412)
T TIGR02332        47 LAATLFYAAYVICGIPSNIMLAIIGARR-----------WIAGIMVLWGIASTATMFA--------------TGPESLYL  101 (412)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhChHH-----------HHHHHHHHHHHHHHHHHHh--------------cCHHHHHH
Confidence            3455555666777888888887666552           2577888888888887764              25777888


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ..++.|++|....+....++.+..|++.||.++|+++...++|..+++.+++..
T Consensus       102 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  155 (412)
T TIGR02332       102 LRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI  155 (412)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999988888899999999999999999999999999998887654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.05  E-value=9.8e-05  Score=73.05  Aligned_cols=113  Identities=12%  Similarity=0.117  Sum_probs=91.1

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.++..+...+..|+.+.+.+++++|+           -+.++.++.+++.+...+.              .+.+.+
T Consensus        49 ~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l  103 (405)
T TIGR00891        49 AASLISAALISRWFGALMFGLWGDRYGRRL-----------PMVTSIVLFSAGTLACGFA--------------PGYITM  103 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHHHHHHHHHh--------------ccHHHH
Confidence            345667777888899999999988776552           2466777777777766654              256677


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ....++.|+++....+....++.+..|++.|+.++|+.....++|..+++.+...+..
T Consensus       104 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~  161 (405)
T TIGR00891       104 FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP  161 (405)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888999999999998888999999999999999999999999999999988776543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.01  E-value=0.00016  Score=71.11  Aligned_cols=87  Identities=16%  Similarity=0.046  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc---chhHHHH
Q 015223           17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG---MDVGFGV   93 (411)
Q Consensus        17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g---~~~~F~i   93 (411)
                      +.+++.-++.+++.|-+ ....+.+...||+++      .+.+.+++. ..|+|..+..+++|++....+   |+.+-.+
T Consensus       106 ~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i  177 (417)
T COG2223         106 WQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI  177 (417)
T ss_pred             HHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            56777777788877664 566688899999866      699999999 999999999999999999999   9998888


Q ss_pred             HHHHHHHHHHHHhhcccc
Q 015223           94 SAAAMALGLFGVVSGTLY  111 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~  111 (411)
                      ..+.+.++.+.+.+..+.
T Consensus       178 ~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         178 YVVALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            888888877777776553

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.01  E-value=0.00013  Score=72.96  Aligned_cols=107  Identities=13%  Similarity=0.061  Sum_probs=85.3

Q ss_pred             chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223          251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL  330 (411)
Q Consensus       251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~  330 (411)
                      ....+...+..|+.+++.+++.+|+           -+..+.++.+++++.....              .+.+++....+
T Consensus        53 ~~~~l~~~~~~~~~G~l~dr~g~k~-----------~l~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~  107 (400)
T PRK11646         53 GLRQFIQQGLGIFGGAIADRFGAKP-----------MIVTGMLMRAAGFATMAIA--------------HEPWLLWLSCI  107 (400)
T ss_pred             HHHHHHHHHHHhhhhHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHH
Confidence            3334555666788888887665442           2567888888888777653              25777888889


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          331 IFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       331 l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ++++++.+..++..+.+.+..|++.|+.++|+......+|..+|+.+++.+.
T Consensus       108 l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        108 LSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888888889999999999999999999999999999998887664

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.99  E-value=0.00023  Score=73.35  Aligned_cols=113  Identities=9%  Similarity=-0.028  Sum_probs=91.6

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+|..+...+...+..|+.+++.+++++|+           -+..|.++.+++.++.+..              .+.+.+
T Consensus        43 ~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~-----------~l~~~~~~~~~~~~~~~~a--------------~~~~~l   97 (495)
T PRK14995         43 LLWIIDIYSLVMAGMVLPMGALGDRIGFKR-----------LLMLGGTLFGLASLAAAFS--------------PTASWL   97 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHHHHHHHHHc--------------CCHHHH
Confidence            456666777777888999999988776553           2577888888888877764              367788


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHH-hhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQ-SLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~-aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      +...+++|+|.....+.....+.+. .|++.|+.++|++.....+|..+|+.+++.+..
T Consensus        98 i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~  156 (495)
T PRK14995         98 IATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE  156 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8889999999999888776767666 588999999999999999999999999887754

>PRK03545 putative arabinose transporter; Provisional

Probab=97.98  E-value=0.0001  Score=73.32  Aligned_cols=111  Identities=9%  Similarity=-0.019  Sum_probs=86.5

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +++.+...+...+..++.+.+.++..+|           +-+..+.++.+++.+.....              .+++++.
T Consensus        47 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~  101 (390)
T PRK03545         47 GLMLTIYAWVVALMSLPLMLLTSNVERR-----------KLLIGLFVLFIASHVLSALA--------------WNFTVLL  101 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChH-----------HHHHHHHHHHHHHHHHHHHh--------------ccHHHHH
Confidence            3445556666667777777776555443           33567888888887777664              3677788


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ...+++|+++....+....++.+..|++.|+.++|++....++|..+|+.+++...
T Consensus       102 ~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~  157 (390)
T PRK03545        102 ISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG  157 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            88899999999888887789999999999999999999999999999988887653

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.98  E-value=0.0018  Score=62.87  Aligned_cols=85  Identities=18%  Similarity=0.189  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc-cchhHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-GMDVGFGV   93 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~-g~~~~F~i   93 (411)
                      ..+.++.+-++.+.|.+.......+++-+.|+++       .+...+.|..+.++|+.+++.+...+.++. ||+.....
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~  170 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF  170 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence            5678888999999999999999999999999853       477899999999999999999999999887 79987776


Q ss_pred             HHHHHHHHHHHHh
Q 015223           94 SAAAMALGLFGVV  106 (411)
Q Consensus        94 ~~~~~~l~~i~~~  106 (411)
                      =+...++++++.+
T Consensus       171 WAl~allAl~~Wl  183 (395)
T COG2807         171 WALLALLALLIWL  183 (395)
T ss_pred             HHHHHHHHHHHHh
Confidence            6655555555444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.96  E-value=0.00025  Score=70.69  Aligned_cols=111  Identities=16%  Similarity=0.081  Sum_probs=86.7

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.+...+..++..++.+++.+++.+|+           -+..+.++.+++.+.....              .+.+++
T Consensus        52 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~  106 (406)
T PRK11551         52 MGWAFSAGILGLLPGALLGGRLADRIGRKR-----------ILIVSVALFGLFSLATAQA--------------WDFPSL  106 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCch-----------hHHHHHHHHHHHHHHHHHh--------------ccHHHH
Confidence            345667777778888899999887766542           2456777776766655543              357778


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      +...++.+++.....+...+.+.+..|++.|+.++|+.+....+|..+++.+....
T Consensus       107 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  162 (406)
T PRK11551        107 LVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA  162 (406)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999888888999999999999999999999999988888776443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.0012  Score=67.87  Aligned_cols=89  Identities=12%  Similarity=-0.000  Sum_probs=75.7

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh------cccc
Q 015223           13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ------THSG   86 (411)
Q Consensus        13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~------~~~g   86 (411)
                      -.+.+.+.+-++++|+-.+..-|+....++..|++++      |..-++++|...++|..+|.+++..+.      ...|
T Consensus       131 ~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g  204 (495)
T KOG2533|consen  131 VHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG  204 (495)
T ss_pred             HhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence            4567888899999999999999999999999999755      788999999999999999999998863      3589


Q ss_pred             chhHHHHHHHHHHHHHHHHhh
Q 015223           87 MDVGFGVSAAAMALGLFGVVS  107 (411)
Q Consensus        87 ~~~~F~i~~~~~~l~~i~~~~  107 (411)
                      |+|.|.+.+++.++..++.++
T Consensus       205 W~~~FiI~G~i~~~~gi~~f~  225 (495)
T KOG2533|consen  205 WRWLFIIEGVITLVLGIVVFF  225 (495)
T ss_pred             ceeehhHHHHHHHHHHheEEE
Confidence            999999999766655444433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.96  E-value=3e-05  Score=77.02  Aligned_cols=114  Identities=17%  Similarity=0.241  Sum_probs=95.8

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +.+|+.-.+.-++..|+++.+-+++.||           .-|++|.++-.++.+..++.+              .+|.++
T Consensus        71 Gll~~vf~v~~~i~sPl~gyLadryNR~-----------~v~~vG~~iW~~Av~~~~fs~--------------~Fwq~~  125 (493)
T KOG1330|consen   71 GLLQTVFIVVFMIASPLFGYLADRYNRK-----------RVIAVGIFIWTLAVFASGFSN--------------HFWQVL  125 (493)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhcCcc-----------eEEeeHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence            3455555566788899999887655443           346899999999999888763              466677


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT  385 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s  385 (411)
                      +.--+.|+||...+|...+++.+..|...|+.+++++++...+|..+|-..++.++..+
T Consensus       126 l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~  184 (493)
T KOG1330|consen  126 LCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT  184 (493)
T ss_pred             HHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence            88899999999999999999999999999999999999999999999999888887765

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.93  E-value=0.00018  Score=59.39  Aligned_cols=108  Identities=18%  Similarity=0.140  Sum_probs=83.1

Q ss_pred             cchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHH
Q 015223          250 QSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQF  329 (411)
Q Consensus       250 ~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~  329 (411)
                      .....+..++..|+.+++.++..+|           +.+..+..+.+++.+.....              .+.+++....
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~   58 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRK-----------PVLLVGLFIFVLSTAMFALS--------------SNITVLIIAR   58 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchh-----------HHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHH
Confidence            3445567777888888877655433           22456666666666655543              2466677778


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          330 LIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       330 ~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ++.+++.....+....++.+..|++.|+..+|+.+....+|..+++.+.+...
T Consensus        59 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        59 FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence            99999999888888889999999999999999999999999999999888764

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.93  E-value=0.00067  Score=72.08  Aligned_cols=253  Identities=7%  Similarity=-0.090  Sum_probs=171.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchh-----
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDV-----   89 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~-----   89 (411)
                      ..+...+.++.++++.++.+++..++.+++.++.++   +++.+.+++|++..+.+.+. .+++..+.....-+.     
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~  156 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGC  156 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccc
Confidence            355566788889999999999999999999998764   26667999999999999865 555655554333222     


Q ss_pred             ---HHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCcccccc
Q 015223           90 ---GFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQ  166 (411)
Q Consensus        90 ---~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (411)
                         -++..++.+++.++.++.....++..++++.+...+.++....+...+.                      +..+ .
T Consensus       157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~----------------------~~~~-~  213 (654)
T TIGR00926       157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK----------------------RFST-R  213 (654)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH----------------------hhcc-C
Confidence               2335556666666677777666655555544333344443333221100                      0000 0


Q ss_pred             chhhhhhhhhhhccCCCCCCCCcccc--cchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeee
Q 015223          167 RFRFLDKACIKVEDGTNKKESPWRLC--TVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV  244 (411)
Q Consensus       167 ~~~~l~~a~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i  244 (411)
                           +        .  .+...|..+  ....+++.+.+.+++.++...+.+|+.+.|.......+..+++...+ .+..
T Consensus       214 -----~--------~--~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~g  277 (654)
T TIGR00926       214 -----S--------E--HWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVGG  277 (654)
T ss_pred             -----C--------c--ccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccCC
Confidence                 0        0  000011111  22223567888889999999999999999987777777777887654 3434


Q ss_pred             CCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhc
Q 015223          245 PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSA  313 (411)
Q Consensus       245 ~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~  313 (411)
                      .+...+.++++-.+++.++...+.+++.++.+++   -.+++++.-+.+.+.++++.+++.+....+.-
T Consensus       278 ~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~~  343 (654)
T TIGR00926       278 FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKVN  343 (654)
T ss_pred             EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556889999999999999888888999987541   34677889999999999999999998777664

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.92  E-value=0.00025  Score=72.33  Aligned_cols=113  Identities=10%  Similarity=-0.050  Sum_probs=92.7

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.+...+..++..|+.+++.+++++|+           -+.+|.++.+++.++.+..              .+.+++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l   93 (485)
T TIGR00711        39 VQWVITSYMLANAISIPLTGWLAKRFGTRR-----------LFLISTFAFTLGSLLCGVA--------------PNLELM   93 (485)
T ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHhCc--------------CCHHHH
Confidence            456677778888899999999887766542           2567777777777766643              357778


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      +...+++|++.....+....++.+..|++.|+.++|++.....+|..+|+.+++.+..
T Consensus        94 ~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  151 (485)
T TIGR00711        94 IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE  151 (485)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence            8889999999999998888999999999999999999999999999999988876643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10054 putative transporter; Provisional

Probab=97.92  E-value=0.00025  Score=70.88  Aligned_cols=112  Identities=11%  Similarity=0.129  Sum_probs=85.1

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+...++..+..++..|+.+++.+++.+|+           -+.++.++.+++++...+.+              +.+..
T Consensus        45 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~   99 (395)
T PRK10054         45 IGYAMTIALTIGVVFSLGFGILADKFDKKR-----------YMLLAITAFASGFIAIPLVN--------------NVTLV   99 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCcch-----------hHHHHHHHHHHHHHHHHHHh--------------HHHHH
Confidence            345566666777888999999887766542           24677777778877776653              34444


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      +..+.+.+.+.....+.......+..|++.|+.++|+.+...++|..+|+.+++.+.
T Consensus       100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054        100 VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555667777777667777788899999999999999999999999999998888764

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.89  E-value=4.5e-05  Score=63.02  Aligned_cols=86  Identities=13%  Similarity=0.086  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+.+.+.+.+++.+...+...+...|.+++++      |.+++++.+...++|..+++.+.+++.+..+|++.|.+.
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  123 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL  123 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence            45667778889999999999999999999998654      789999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHh
Q 015223           95 AAAMALGLFGVV  106 (411)
Q Consensus        95 ~~~~~l~~i~~~  106 (411)
                      .+...++.+...
T Consensus       124 ~~~~~~~~~~~~  135 (141)
T TIGR00880       124 AILALAAFILLA  135 (141)
T ss_pred             HHHHHHHHHHHh
Confidence            766555554443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.89  E-value=0.0013  Score=65.73  Aligned_cols=63  Identities=16%  Similarity=0.146  Sum_probs=51.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHH-HHHHhHHHHHHhHhhhhhc
Q 015223          320 LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMT-YCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       320 ~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~-~l~~~~G~~lg~~l~~~~~  382 (411)
                      .+++++++...+.++--.+.-++..-++.+..|+++.++...+. .+..++|..+.+.+.+...
T Consensus       310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly  373 (412)
T PF01306_consen  310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY  373 (412)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence            46888888889999988888889989999999999998887774 6888888888777777543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.88  E-value=0.00043  Score=68.62  Aligned_cols=113  Identities=15%  Similarity=0.062  Sum_probs=91.2

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.+...+...+..|+.+++.++.++|+           .+..+.++.+++++..+..              .+.+.+
T Consensus        43 ~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l   97 (381)
T PRK03633         43 VGVVSSSYFTGNLVGTLLAGYVIKRIGFNR-----------SYYLASLIFAAGCAGLGLM--------------VGFWSW   97 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHh--------------ccHHHH
Confidence            355667777888888999999888777653           2567888888888776654              257777


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      +...++.|+++....+.....+.+..|++.|+..+|.+.....+|..+|+.+.+....
T Consensus        98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633         98 LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            8888999999999888776778889999999999999999999999999988887643

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.88  E-value=0.00032  Score=70.39  Aligned_cols=110  Identities=13%  Similarity=0.128  Sum_probs=88.6

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +...++..+...+..|+.+++.+++++|           +-+.++.++.+++.+..++.+              +.+++.
T Consensus        56 ~~~~~~~~~~~~l~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~--------------~~~~l~  110 (426)
T PRK12307         56 AFLATAAFIGRPFGGALFGLLADKFGRK-----------PLMMWSIVAYSVGTGLSGLAS--------------GVIMLT  110 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHHh--------------HHHHHH
Confidence            4456677778888899999988766544           225678888888887776653              567778


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ...++.|+|+....+....++.+..|++.|+.++|++....++|..+++.+...+
T Consensus       111 ~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l  165 (426)
T PRK12307        111 LSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF  165 (426)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence            8889999999988888878999999999999999999999999999988776544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.86  E-value=0.0051  Score=63.74  Aligned_cols=83  Identities=11%  Similarity=-0.032  Sum_probs=71.7

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223           13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFG   92 (411)
Q Consensus        13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~   92 (411)
                      ..+.+.+.+.|.+.+++.++...+...+++|.++++.      |..+.++ +.....|+.+++.+++|+..  +||+.++
T Consensus       168 a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~  238 (521)
T KOG0255|consen  168 APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW  238 (521)
T ss_pred             hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence            4578899999999999999999999999999999755      8888888 88888899999999999987  8999999


Q ss_pred             HHHHHHHHHHHH
Q 015223           93 VSAAAMALGLFG  104 (411)
Q Consensus        93 i~~~~~~l~~i~  104 (411)
                      +..+..++.++.
T Consensus       239 ~~~~~~~~~~~~  250 (521)
T KOG0255|consen  239 IISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            887665544444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.86  E-value=0.00044  Score=69.12  Aligned_cols=111  Identities=10%  Similarity=-0.003  Sum_probs=89.7

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      ...+...+...+..|+.+++.++..||           +-+..+.++.+++.+.....              .+.+++..
T Consensus        59 ~~~~~~~~~~~~~~~~~g~l~Dr~grr-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~  113 (394)
T PRK10213         59 QSVTVTAFVAMFASLFITQTIQATDRR-----------YVVILFAVLLTLSCLLVSFA--------------NSFSLLLI  113 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCcH-----------HHHHHHHHHHHHHHHHHHHH--------------ChHHHHHH
Confidence            345667777888899998887665544           23567888888777766553              36778888


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ..++++++.....+...+++.+..|++.|+.++|+.....++|..+|+.+++.+..
T Consensus       114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~  169 (394)
T PRK10213        114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE  169 (394)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88999999999988888999999999999999999999999999999998887654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.86  E-value=0.00022  Score=70.47  Aligned_cols=114  Identities=15%  Similarity=0.057  Sum_probs=95.4

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.++.++...+.+|++..+..++.||+           -+...+.+..+|-++.++.              .+++.+
T Consensus        50 aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~-----------lLl~~l~lFi~~n~l~alA--------------p~f~~L  104 (394)
T COG2814          50 AGQLITAYALGVALGAPLLALLTGRLERRR-----------LLLGLLALFIVSNLLSALA--------------PSFAVL  104 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchHH-----------HHHHHHHHHHHHHHHHHHh--------------ccHHHH
Confidence            567889999999999999998886655442           2445666778888888875              378889


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  384 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~  384 (411)
                      +..-++.+++.........+.+.+.+||+.|+.++|+......++..+|.-++.++...
T Consensus       105 l~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~  163 (394)
T COG2814         105 LLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL  163 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            99999999999999977779999999999999999999999999999988888777653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.85  E-value=0.013  Score=60.18  Aligned_cols=61  Identities=15%  Similarity=0.081  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223          325 ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT  385 (411)
Q Consensus       325 li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s  385 (411)
                      +.+.-++.|+...-.....=++..+.+|++..+.+.|++.++.-....+||.+.+.+...+
T Consensus       383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t  443 (477)
T PF11700_consen  383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT  443 (477)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334467888888888777789999999999999999999999999999999999987766

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.83  E-value=0.00051  Score=69.12  Aligned_cols=115  Identities=14%  Similarity=0.080  Sum_probs=92.3

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.+...+..++..|..+++.+|+++|+           -+.+|.++.+++.++......           ..+.+++
T Consensus        40 ~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~-----------~~~~g~~l~~~g~~l~~~~~~-----------~~~~~~~   97 (410)
T TIGR00885        40 AALVQSAFYGGYFIMAIPAAIFMKKLSYKA-----------GILLGLFLYALGAFLFWPAAE-----------IMNYTLF   97 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHHHh-----------hccHHHH
Confidence            345677777888888999998887666543           357788888888777544321           1356777


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      +...++.++|..+..++.+.++.+..|++.++..+++.+...++|..+|+.+...+.
T Consensus        98 l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        98 LVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999999888889999999999999999999999999999999988764

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.82  E-value=5e-05  Score=75.64  Aligned_cols=90  Identities=16%  Similarity=0.021  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223           16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA   95 (411)
Q Consensus        16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~   95 (411)
                      ....+++.++.++|.+...|...+...|.+++++      |++++++++...++|..+++.+.|++.++.||+..|.+.+
T Consensus       302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  375 (399)
T PRK05122        302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA  375 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            4456677888999999888888888888776433      7999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHhhcccc
Q 015223           96 AAMALGLFGVVSGTLY  111 (411)
Q Consensus        96 ~~~~l~~i~~~~~~~~  111 (411)
                      +..+++++.....+++
T Consensus       376 ~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        376 LAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            7777776665554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.82  E-value=0.00056  Score=69.24  Aligned_cols=110  Identities=13%  Similarity=0.066  Sum_probs=85.8

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +.+.+...+...+..|+.+++.+++.+|+           -+.++.++.+++.+..+...              +.+.+.
T Consensus        61 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~l~  115 (434)
T PRK11663         61 GLLATLFYITYGVSKFVSGIVSDRSNARY-----------FMGIGLIATGIINILFGFSS--------------SLWAFA  115 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhcCCch-----------hHHHHHHHHHHHHHHHHHHh--------------HHHHHH
Confidence            34455666777888888888887665442           25778888888877666542              466666


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ...++.++++....+.....+.+..|++.||.++|+++...++|..+++.+.+.+
T Consensus       116 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  170 (434)
T PRK11663        116 LLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI  170 (434)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778899999988888888999999999999999999999999999988766654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.81  E-value=0.00043  Score=66.96  Aligned_cols=112  Identities=15%  Similarity=0.167  Sum_probs=90.9

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.+...+...+..|+.+.+.+++++|+           -+.++.++.+++.++..+.              .+.+.+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~--------------~~~~~~   88 (352)
T PF07690_consen   34 IGLLFSAFFLGSALFSPFAGYLSDRFGRRR-----------VLIIGLLLFALGSLLLAFA--------------SNFWLL   88 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-HHH-----------HHHHHHHHHHHHHHHHHHH--------------CCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCee-----------eEeehhhhhhhHHHHhhhh--------------hhHHHH
Confidence            345667777888899999999887766542           3577888888885555532              145578


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      +...++.|+++....+....++.+..|++.|+.++|+.....++|..+|+.+++.+.
T Consensus        89 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  145 (352)
T PF07690_consen   89 LIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI  145 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence            888999999999999999999999999999999999999999999999999988775

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.78  E-value=0.00036  Score=68.62  Aligned_cols=111  Identities=11%  Similarity=0.062  Sum_probs=89.1

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +++.+.+.+...+..|+.+++.+++.+|           +-+..+.++.+++.+.....              .+.++++
T Consensus        43 g~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~   97 (385)
T TIGR00710        43 QMTLTLYLLGFAAGQLLWGPLSDRYGRR-----------PVLLLGLFIFALSSLGLALS--------------NNIETLL   97 (385)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhcCCh-----------HHHHHHHHHHHHHHHHHHHH--------------ccHHHHH
Confidence            4556677777788888888887766543           22566777877877776654              2567778


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ...++.++++....+...+++.+..|++.|+.++|+.+....+|..+|+.+++.+.
T Consensus        98 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  153 (385)
T TIGR00710        98 VLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL  153 (385)
T ss_pred             HHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999888899999999999999999999999999999988887654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.77  E-value=0.00026  Score=69.24  Aligned_cols=111  Identities=12%  Similarity=-0.031  Sum_probs=90.5

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.+...+...+..|+.+++.+++.+|+           -+..+.++.+++.++.+..              .+.+++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~   85 (399)
T TIGR00893        31 YGYVFSAFSWGYVVGQFPGGWLLDRFGARK-----------TLAVFIVIWGVFTGLQAFA--------------GAYVSL   85 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhcCcce-----------eeHHHHHHHHHHHHHHHHH--------------cCHHHH
Confidence            345677777888888999999888776553           1356777777777766654              267778


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ....++.|++.....+....++.+..|++.|+..+|++.....+|..+++.+.+.+
T Consensus        86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  141 (399)
T TIGR00893        86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWI  141 (399)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            88899999999999988889999999999999999999999999999998887754

>TIGR00895 2A0115 benzoate transport

Probab=97.73  E-value=0.00033  Score=68.93  Aligned_cols=111  Identities=14%  Similarity=0.173  Sum_probs=86.7

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +++.++..+..++..++.+++.+++.+|+           -+..+.++.+++.++....              .+.++++
T Consensus        55 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~  109 (398)
T TIGR00895        55 GFLFSAGLIGMAFGALFFGPLADRIGRKR-----------VLLWSILLFSVFTLLCALA--------------TNVTQLL  109 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHc--------------cchHHHH
Confidence            34555666667788888888887665442           2456777777776666543              2566677


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ...++.+++.....+....++.+..|++.|+.++|+......+|..+++.+.+.+.
T Consensus       110 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  165 (398)
T TIGR00895       110 ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI  165 (398)
T ss_pred             HHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence            88899999999999888899999999999999999999999999999998887653

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.73  E-value=0.00036  Score=67.79  Aligned_cols=116  Identities=9%  Similarity=0.042  Sum_probs=90.6

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +++.++..+..++..|+.+++.+++.+|+           -+..+.++.+++.+........     +    ..+.+++.
T Consensus        37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~   96 (365)
T TIGR00900        37 SLAALAGMLPYVVLSPIAGALADRYDRKK-----------VMIGADLIRAVLVAVLPFVALL-----G----GLNIWQVY   96 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhchhH-----------HHHHHHHHHHHHHHHHHHHHHc-----C----CCcHHHHH
Confidence            45566777888888999999888776542           2456666666666666555310     0    13677788


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ...++.++++.+..+...+++.+..|++.|+.++|.......+|..+|+.+++...
T Consensus        97 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        97 VLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999998899999999999999999999999999999988877653

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.71  E-value=0.00059  Score=67.72  Aligned_cols=112  Identities=14%  Similarity=0.031  Sum_probs=89.2

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .++..+.+.+..++..|+.+++.++..+|           +-+.++.++.+++.++.+..              .+.+++
T Consensus        40 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~l~~~~--------------~~~~~l   94 (382)
T PRK10091         40 AGHMISYYALGVVVGAPIIALFSSRYSLK-----------HILLFLVALCVIGNAMFTLS--------------SSYLML   94 (382)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHccCccH-----------HHHHHHHHHHHHHHHHHHHh--------------CcHHHH
Confidence            34567777888889999999888665543           23567888888888777654              367788


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ....++.|+++....+.....+.+..|++.|+..+|++.....+|..+|+.+++.+.
T Consensus        95 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         95 AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence            888999999999888777778899999999999999999888899888887776553

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.70  E-value=0.00039  Score=69.99  Aligned_cols=111  Identities=15%  Similarity=0.085  Sum_probs=88.9

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.++..+...+..|+.+++.+++++|+           -+.++.++.+++.++......           ..+.+++
T Consensus        73 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~-----------~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~  130 (481)
T TIGR00879        73 WGLVVSIFLVGGFIGALFAGWLSDRFGRKK-----------SLLIIALLFVIGAILMGLAAF-----------ALSVEML  130 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhhhHH-----------HHHHHHHHHHHHHHHHHHhcc-----------ccchHHH
Confidence            345566777778888999999887776552           256777777777777765421           2345567


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV  378 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~  378 (411)
                      +...+++|+|+....+....++.+..|++.|+.++++++....+|..+++.+.
T Consensus       131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            78889999999999988889999999999999999999999999999999988

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.70  E-value=0.0013  Score=70.89  Aligned_cols=110  Identities=10%  Similarity=0.006  Sum_probs=87.7

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +++.++..+..++..++.+++.++++||+           .+.+++++.+++.++.++.              .+.++++
T Consensus       205 g~l~s~~~lG~iiG~li~G~LsDR~GRR~-----------~lii~lil~~i~~ll~afa--------------~s~~~ll  259 (742)
T TIGR01299       205 GMLGLIVYLGMMVGAFFWGGLADKLGRKQ-----------CLLICLSVNGFFAFFSSFV--------------QGYGFFL  259 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHH--------------hhHHHHH
Confidence            45667777888888999999887776653           2456666666666666554              2567778


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ...++.|+|.....+....++.+..|++.||..++++.....+|..+++.++..+
T Consensus       260 v~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       260 FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999988889999999999999999999999999999988766544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.68  E-value=0.00097  Score=65.19  Aligned_cols=110  Identities=15%  Similarity=0.105  Sum_probs=82.6

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.+...+...+..|+.+++.+++.+|+           .+.++.++.+++.++.+..+             .+.+++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~i~~~~~~~~~-------------~~~~~~   94 (366)
T TIGR00886        39 LGNLVAVPVLAGAVLRIILGFLVDKFGPRY-----------TTTLSLLLLAIPCLWAGLAV-------------QSYSVL   94 (366)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHHh-------------hhHHHH
Confidence            355667777888888999999887766542           25678888888887777642             156677


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSF  380 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~  380 (411)
                      +...++++++.....+ ...++.+..|++.|+.+++++.....+|..+++.+...
T Consensus        95 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  148 (366)
T TIGR00886        95 LLLRLFIGIAGGSFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP  148 (366)
T ss_pred             HHHHHHHHHhchhhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence            7788999999776544 45789999999999999999887777777666665543

>PRK10133 L-fucose transporter; Provisional

Probab=97.68  E-value=0.0013  Score=66.84  Aligned_cols=113  Identities=14%  Similarity=0.059  Sum_probs=86.7

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +.+.+...+...+.+|+.+++.+++++|+           -+..|.++.+++.++......           ..+++++.
T Consensus        64 gl~~~~~~~g~~i~~~~~g~l~dr~G~r~-----------~l~~g~~~~~~~~~l~~~~~~-----------a~~~~~ll  121 (438)
T PRK10133         64 GLIQSAFYFGYFIIPIPAGILMKKLSYKA-----------GIITGLFLYALGAALFWPAAE-----------IMNYTLFL  121 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHHHh-----------cCCHHHHH
Confidence            34456666778888999998887776553           257788888888876532210           23677788


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ...+++|+|.....+..+.++.+..|++.+...+++.....++|..+|+.++..+
T Consensus       122 ~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999988888888887787777788999999999999998887643

>PRK10504 putative transporter; Provisional

Probab=97.68  E-value=0.00099  Score=67.95  Aligned_cols=111  Identities=9%  Similarity=-0.028  Sum_probs=85.4

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      ++.+...+...+..|+.+++.+++.+|+           .+..+.++.+++.+.....              .+.+.++.
T Consensus        49 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~  103 (471)
T PRK10504         49 MVIVSYVLTVAVMLPASGWLADRVGVRN-----------IFFTAIVLFTLGSLFCALS--------------GTLNELLL  103 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHH-----------HHHHHHHHHHHHHHHHHHh--------------CCHHHHHH
Confidence            4455555666788888888887776542           2355666666666654432              35667778


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ..+++|++.....+.....+.+..|++.++.+.|+......+|..+|+.+.+.+..
T Consensus       104 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~  159 (471)
T PRK10504        104 ARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE  159 (471)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            88999999999988888889999999999999999999999999999888876643

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.67  E-value=0.0052  Score=62.21  Aligned_cols=269  Identities=12%  Similarity=0.075  Sum_probs=143.3

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-------cc
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-------SG   86 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-------~g   86 (411)
                      .+....++-..+.+++...+.--..++.+.+.++.+  |   |.+..+|..+..++|.++...+.+.+...       .|
T Consensus       110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--E---R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g  184 (467)
T COG2211         110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--E---RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG  184 (467)
T ss_pred             cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Confidence            344555566677888999999999999999998643  3   78899999999999988877766655432       34


Q ss_pred             chhHHHHHHHHHHHHHHHHhhcccceeccCCC-CCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccc
Q 015223           87 MDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQ-GSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLT  165 (411)
Q Consensus        87 ~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (411)
                      |+..=.+-+   +++.+.+++..+..++ ++. ..+                    .++                    +
T Consensus       185 ~~~~~~~~~---vi~~i~~l~~~~~v~E-R~~~~~~--------------------~~~--------------------~  220 (467)
T COG2211         185 YQGTALVLG---VIGVILLLFCFFNVKE-RVVETQP--------------------TKT--------------------G  220 (467)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHhhc-ccCcccc--------------------Ccc--------------------c
Confidence            443332222   3333333333332211 110 000                    000                    0


Q ss_pred             cchhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeC
Q 015223          166 QRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVP  245 (411)
Q Consensus       166 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~  245 (411)
                      .+..+.+....+       +            .++ .++.   +.+..+.++..++...+.+++...   ..++ .-+.-
T Consensus       221 ~~~~~~~~~~~~-------~------------~Nr-p~~~---~l~~~l~~~~~~~i~~s~~~yy~~---y~lg-~~~l~  273 (467)
T COG2211         221 VKLKLKDSFLLI-------F------------KNR-PLLL---LLLMNLLLFIAFNIRGSIMVYYVT---YVLG-DPELF  273 (467)
T ss_pred             ccccHHHHHHHH-------H------------ccc-hHHH---HHHHHHHHHHHHHHHhhhhheeEE---EEcC-ChHHH
Confidence            000111111000       0            111 1111   112233444444444444333221   1112 11111


Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      +...........++..++..++.++++||           +-+..|.++..++.+...+..            ..+.++.
T Consensus       274 ~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----------~~~~~~~~~~~i~~~~~~f~~------------~~~~~l~  330 (467)
T COG2211         274 AYLLLLASGAGLLIGLILWPRLVKKFGKK-----------KLFLIGLLLLAVGYLLLYFTP------------AGSVVLI  330 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHhhc------------CcchHHH
Confidence            22222222222333345544444444433           335778888888888888763            2356666


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHh-------hhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQS-------LKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~a-------P~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      +...++.++|-....+-..+++.+.+       -+|..|..-|...+.+=+|..+++.+.+.+
T Consensus       331 ~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~  393 (467)
T COG2211         331 VVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI  393 (467)
T ss_pred             HHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778888888887754445565554       456778888888888888888887666654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.66  E-value=0.0017  Score=64.48  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=83.0

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +.+.++..+...+..|+.+++.+++.+|+           -+..+.++.+++.+.....              .+.++++
T Consensus        57 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~  111 (408)
T PRK09874         57 GLVFSITFLFSAIASPFWGGLADRKGRKI-----------MLLRSALGMGIVMVLMGLA--------------QNIWQFL  111 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhCcHH-----------HHHHHHHHHHHHHHHHHHH--------------hhHHHHH
Confidence            44566777778888999999887765442           2456777777776665543              2577777


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ...++.+++..+. +.....+.+..|++.|+.++|+......+|..+++.+.+.+.
T Consensus       112 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  166 (408)
T PRK09874        112 ILRALLGLLGGFV-PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA  166 (408)
T ss_pred             HHHHHHHHhhhhH-HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999887654 555578889999999999999999999999988888877653

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.62  E-value=0.0017  Score=66.53  Aligned_cols=110  Identities=14%  Similarity=0.149  Sum_probs=86.4

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +++.+...+..++..|+.+++.+++.+|+           -+.++.++.+++.+...+.              .+.+++.
T Consensus        58 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l~  112 (496)
T PRK03893         58 ASLISAAFISRWFGGLLLGAMGDRYGRRL-----------AMVISIVLFSVGTLACGFA--------------PGYWTLF  112 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHH--------------hHHHHHH
Confidence            34555566666777888888887665542           2466777777777777654              2567778


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ...++.+++.....+....++.+..|++.|+.++|++.....+|+.+++.+...+
T Consensus       113 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  167 (496)
T PRK03893        113 IARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLV  167 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999998888888999999999999999999999999999998777654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.62  E-value=0.017  Score=58.04  Aligned_cols=90  Identities=12%  Similarity=0.108  Sum_probs=66.7

Q ss_pred             CchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccc--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHH
Q 015223          283 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLS--IFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLT  360 (411)
Q Consensus       283 s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s--~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~  360 (411)
                      +..+-+.++.+..++=+.+.+..+        +   +..  +..+....+++|+.-.+...+...++.+.+|++.|+.++
T Consensus       271 g~~~ll~~a~~~~~vR~~l~a~~~--------~---~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q  339 (400)
T PF03825_consen  271 GIKWLLLLALVAYAVRWLLYAYFS--------D---PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQ  339 (400)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhc--------C---CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence            444556777777777777777652        0   111  112334456799999999988889999999999999999


Q ss_pred             HHHHH-HHhHHHHHHhHhhhhhcc
Q 015223          361 AMTYC-SYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       361 g~~~l-~~~~G~~lg~~l~~~~~~  383 (411)
                      |++.. ..++|..+|..+++.+..
T Consensus       340 ~l~~~~~~Glg~~iG~~igG~l~~  363 (400)
T PF03825_consen  340 GLYSALSFGLGGAIGSLIGGWLYD  363 (400)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99875 468999999988887644

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.60  E-value=0.0011  Score=67.37  Aligned_cols=90  Identities=19%  Similarity=0.046  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.....+.+.+..+|.....-..-+++.+.-.+++..    |+.--++.|....+|++++..+.|++.++.+++..|.++
T Consensus        85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~  160 (433)
T PF03092_consen   85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS  160 (433)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence            3445566777888999999999999999888765532    688889999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhhc
Q 015223           95 AAAMALGLFGVVSG  108 (411)
Q Consensus        95 ~~~~~l~~i~~~~~  108 (411)
                      .+...+..+..++.
T Consensus       161 ~~~~~l~~~~~~~~  174 (433)
T PF03092_consen  161 AALPLLMLIVALFL  174 (433)
T ss_pred             HHHHHHHHHHHHHh
Confidence            76666555444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.60  E-value=0.01  Score=60.50  Aligned_cols=88  Identities=9%  Similarity=-0.057  Sum_probs=71.4

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHH-h-hhhccccchhHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL-V-WVQTHSGMDVGF   91 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~-g-~l~~~~g~~~~F   91 (411)
                      ....++.+++.+.++..|........++.+.-|++-      |+..=...-+++++|.++|..++ + .+...-.|++.+
T Consensus       114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~  187 (485)
T KOG0569|consen  114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLL  187 (485)
T ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHH
Confidence            456789999999999999999999999998887644      89999999999999999996655 2 455666799999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 015223           92 GVSAAAMALGLFGVVS  107 (411)
Q Consensus        92 ~i~~~~~~l~~i~~~~  107 (411)
                      ..+.+..++.++...+
T Consensus       188 ~~~~i~~~~~l~~l~~  203 (485)
T KOG0569|consen  188 AFPLIPALLQLALLPF  203 (485)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9888766555554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.59  E-value=0.00069  Score=65.15  Aligned_cols=113  Identities=13%  Similarity=0.101  Sum_probs=92.7

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .++..+...+...+..|+.+++.++..+|+           -+..+.++.+++.+.....              .+.+++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~   90 (352)
T cd06174          36 AGLIVSAFSLGYALGSLLAGYLSDRFGRRR-----------VLLLGLLLFALGSLLLAFA--------------SSLWLL   90 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhCCch-----------hhHHHHHHHHHHHHHHHHh--------------ccHHHH
Confidence            345566677778888999999887765542           2567888888888777664              256778


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ....++.+++..+..+....+..+..|++.|+..+++......+|..+++.+.+.+..
T Consensus        91 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174          91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             HHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999998888999999999999999999999999999999999887654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.58  E-value=0.00022  Score=72.93  Aligned_cols=113  Identities=10%  Similarity=-0.054  Sum_probs=84.5

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +++.+...+.-.+..|+.+.+.+++++|+           -+.++.++.+++.+..+.....         ...+.+.++
T Consensus        67 g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~  126 (467)
T PRK09556         67 GMIGLGFSITYGVGKTLVGYYADGKNTKQ-----------FLPFLLILSAICMLGFGASLGS---------GSVSLGLMI  126 (467)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhhccCccc-----------hHHHHHHHHHHHHHHHHHHHhc---------ccchHHHHH
Confidence            34455556666788888898887665542           2466777766666655543210         023677788


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhh
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVS  379 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~  379 (411)
                      ...+++|++|....+....++.+..|++.||.++|++.....+|..+++.+..
T Consensus       127 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~  179 (467)
T PRK09556        127 ALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL  179 (467)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence            88999999999999888899999999999999999999999999888876654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.57  E-value=0.00069  Score=67.65  Aligned_cols=108  Identities=9%  Similarity=0.005  Sum_probs=84.1

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.+...+...++.|+.+++.+++.||+           -+..+.++.+++.+.+....              +.   
T Consensus        40 ~~~~~~~~~l~~~l~~~~~G~laDr~grr~-----------vl~~~~~~~~~~~~~~~~~~--------------~~---   91 (393)
T PRK11195         40 QPLLQMFFVLAYIVLAPFVGAFADSFPKGR-----------VMFIANGIKLLGCLLMLFGI--------------HP---   91 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhccCCch-----------hhHHHHHHHHHHHHHHHHHH--------------HH---
Confidence            355667777888899999999998877653           24566666666655544321              22   


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      +...+++|+++.+..|...+++.+..|++.|+.++|++.....+|..+|+.+++..
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999999988888888877655

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.55  E-value=0.0028  Score=63.32  Aligned_cols=109  Identities=13%  Similarity=-0.018  Sum_probs=81.2

Q ss_pred             ccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223          249 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ  328 (411)
Q Consensus       249 l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~  328 (411)
                      ..+...+...+..|+.+.+.+++.+|+           -+..+.++.+++.+.....              .+.+.++..
T Consensus        53 ~~~~~~~~~~~~~~~~G~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~--------------~~~~~l~~~  107 (406)
T PRK15402         53 SMTAYLAGGMFLQWLLGPLSDRIGRRP-----------VMLAGVAFFILTCLAILLA--------------QSIEQFTLL  107 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChH-----------HHHHHHHHHHHHHHHHHHH--------------ccHHHHHHH
Confidence            445566667777888888887665442           2456777777776665543              256667778


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          329 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       329 ~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      .++++++.....+.....+.+..|++.++..+++......+|..+|+.+.+.+.
T Consensus       108 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  161 (406)
T PRK15402        108 RFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI  161 (406)
T ss_pred             HHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999888777788899999999999999888777788888887776553

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.54  E-value=0.0014  Score=64.99  Aligned_cols=110  Identities=11%  Similarity=-0.065  Sum_probs=85.3

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      +..++..+...+..|+.+++.+++.+|+           -+..|.++.+++.+.....              .+.+++..
T Consensus        42 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-----------~l~~~~~~~~i~~~~~~~~--------------~~~~~~~~   96 (392)
T PRK10473         42 IAFSVYLAGMAAAMLFAGKIADRSGRKP-----------VAIPGAALFIIASLLCSLA--------------ETSSLFLA   96 (392)
T ss_pred             HHHHHHHHHHHHHHHhHhHHHHHhCChH-----------HHHHHHHHHHHHHHHHHHh--------------CcHHHHHH
Confidence            3455555667788899999988765442           2456777777777766543              25667777


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ..++++++.....+..+.++.+..|++.|+..+|+++....+|..+++.++..+.
T Consensus        97 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~  151 (392)
T PRK10473         97 GRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM  151 (392)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999888777789999999999999999999988888888888876653

>PRK12382 putative transporter; Provisional

Probab=97.53  E-value=0.00024  Score=70.62  Aligned_cols=86  Identities=13%  Similarity=0.033  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223           16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA   95 (411)
Q Consensus        16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~   95 (411)
                      ....+++..+.+++.+...|...+...|.+++++      |++++++++...++|..+||.+.|++.+++||+..|.+.+
T Consensus       302 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~  375 (392)
T PRK12382        302 AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGA  375 (392)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            4455667788889999888988888888887533      7999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhh
Q 015223           96 AAMALGLFGVVS  107 (411)
Q Consensus        96 ~~~~l~~i~~~~  107 (411)
                      +..+++.+..+.
T Consensus       376 ~~~~~~~~~~~~  387 (392)
T PRK12382        376 ISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHh
Confidence            777777665543

>PRK03699 putative transporter; Provisional

Probab=97.50  E-value=0.002  Score=64.24  Aligned_cols=110  Identities=10%  Similarity=0.059  Sum_probs=83.7

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +...+...+...+..++.+++.+++.+|+           .+..+.++.+++.+...+.              .+.+++.
T Consensus        45 g~~~s~~~~~~~i~~~~~g~l~dr~g~r~-----------~~~~~~~~~~i~~~l~~~~--------------~~~~~~~   99 (394)
T PRK03699         45 SNTFTFLNAGILISIFLNAWLMEIIPLKR-----------QLIFGFALMILAVAGLMFS--------------HSLALFS   99 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHHHc--------------chHHHHH
Confidence            34456666777788888888887776552           2456777777777766653              2566777


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ...++.++++....+.....+.+..|++.|+..++..+...++|..+++.+.+.+
T Consensus       100 ~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699        100 IAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             HHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999988877778899999999999999998888888888888776644

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.49  E-value=0.002  Score=64.87  Aligned_cols=110  Identities=14%  Similarity=-0.046  Sum_probs=83.2

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      +..++..+...+..|+.+.+.++++||+           -+..+.++.+++.+.....              .+.++++.
T Consensus        55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~-----------~l~~~~~~~~~~~~~~~~a--------------~~~~~l~~  109 (413)
T PRK15403         55 ASVSLYLAGGMALQWLLGPLSDRIGRRP-----------VLITGALIFTLACAATLFT--------------TSMTQFLI  109 (413)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHcCchH-----------HHHHHHHHHHHHHHHHHHc--------------CCHHHHHH
Confidence            3445555666777888888887766542           2566777777777666653              36778888


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      .-+++|+++....+.....+.+..|++.++.+++++.....+|..+|+.+++...
T Consensus       110 ~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~  164 (413)
T PRK15403        110 ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM  164 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999998766666667778889999999999999999999999988887654

>TIGR00889 2A0110 nucleoside transporter

Probab=97.48  E-value=0.00027  Score=71.28  Aligned_cols=87  Identities=8%  Similarity=-0.068  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHhhHHhhhhcc------ccch
Q 015223           16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY-FAFSTGELVALTVLVWVQTH------SGMD   88 (411)
Q Consensus        16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y-~~iNlG~~ig~~l~g~l~~~------~g~~   88 (411)
                      .+.+++...+.+++.+...+....++.|.+++++      |.+++++.+ +..++|..+||.++|++.++      +||+
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~  381 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ  381 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence            4567778888999999999999999999998644      799999997 56789999999999999987      4699


Q ss_pred             hHHHHHHHHHHHHHHHHhhc
Q 015223           89 VGFGVSAAAMALGLFGVVSG  108 (411)
Q Consensus        89 ~~F~i~~~~~~l~~i~~~~~  108 (411)
                      .+|.+.++..+++.+.+.+.
T Consensus       382 ~~f~~~~~~~~i~~~l~~~~  401 (418)
T TIGR00889       382 TMWLFFAGYIAILAVLFMIF  401 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99998877666666555443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.47  E-value=0.0012  Score=65.93  Aligned_cols=110  Identities=10%  Similarity=0.077  Sum_probs=87.8

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.+.+.+...+.+|+.+++.+++++|+           -+..|..+.+++.+..++.+              +.+.+
T Consensus        46 ~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~-----------~l~~~~~l~~~~~~~~~~a~--------------~~~~l  100 (393)
T PRK09705         46 AALLTALPVVTMGGLALAGSWLHQHVSERR-----------SVAISLLLIAVGALMRELYP--------------QSALL  100 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHCc--------------chHHH
Confidence            345667777888888999999987776653           36789999999999888753              46667


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      +...+++|+|+....+...+.+.+..| +.|+.++|.+......|..+|+.++..+
T Consensus       101 l~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l  155 (393)
T PRK09705        101 LSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWL  155 (393)
T ss_pred             HHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778899999999988877777777776 7799999999988888888888777654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.42  E-value=0.00096  Score=67.99  Aligned_cols=113  Identities=15%  Similarity=0.163  Sum_probs=86.2

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      .+.+...+..++..++.+++.+++.+|+           -+..+.++.+++.++.....            ..+.++++.
T Consensus        80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~------------~~~~~~l~~  136 (465)
T TIGR00894        80 LILSSHFYGQIIIQIPVGYLAGKYVFKW-----------SIGIGMFLSSVISIVIPWAA------------GGGIALVVF  136 (465)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHhCcch-----------hhHHHHHHHHHHHHHHHHHH------------HcCchHHHH
Confidence            3445555666777888888877665542           24566666666665554332            134667888


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ..+++|++|....+....++.+..|++.|+.++|+......+|..+++.+.+.+..
T Consensus       137 ~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~  192 (465)
T TIGR00894       137 CRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE  192 (465)
T ss_pred             HHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88999999999999998999999999999999999999999999999998887643

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.39  E-value=0.021  Score=59.22  Aligned_cols=84  Identities=10%  Similarity=0.069  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-ccchhHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-SGMDVGFGV   93 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-~g~~~~F~i   93 (411)
                      +...+++||++.++|.|+..-.+.-.+++.-+++.      |+...+.+...+++|.+++..++....+. ++||..+.+
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~  214 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL  214 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence            77899999999999999999888888888776533      89999999999999999996655555443 589988877


Q ss_pred             HHHHHHHHHHH
Q 015223           94 SAAAMALGLFG  104 (411)
Q Consensus        94 ~~~~~~l~~i~  104 (411)
                      ..+..++-.+.
T Consensus       215 ~~i~~~~~~~~  225 (513)
T KOG0254|consen  215 ALIPAVILALG  225 (513)
T ss_pred             HHHHHHHHHHH
Confidence            66544433333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.38  E-value=0.0018  Score=63.70  Aligned_cols=110  Identities=15%  Similarity=0.121  Sum_probs=85.9

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      .+.++..+...+..|+.+++.+++.+|           +-+..+.++.+++.+.....+              +.+.+..
T Consensus        30 ~~~~~~~~~~~~~~~~~g~l~d~~g~~-----------~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~   84 (377)
T PRK11102         30 MTLSAYILGFAIGQLFYGPMADSFGRK-----------PVILGGTLVFALAAVACALAQ--------------TIDQLIY   84 (377)
T ss_pred             HHHHHHHHHHHHHHHhhchHHhhcCCh-----------HHHHHHHHHHHHHHHHHHHHc--------------cHHHHHH
Confidence            345566677778888888887665433           235678888888877776542              4566777


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ..++++++.....+...+++.+..|++.|+.++|+++....+|..+++.+.+.+.
T Consensus        85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  139 (377)
T PRK11102         85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL  139 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999988888889999999999999999999999999999888776553

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.38  E-value=0.0017  Score=60.97  Aligned_cols=274  Identities=12%  Similarity=0.104  Sum_probs=150.8

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      +..+....++.+.++|.-.....-+......|+.++      ..-+|+++-...-+|+.+...+-+++.++.+=  .|- 
T Consensus       134 ~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~~--~~~-  204 (459)
T KOG4686|consen  134 HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR--MFP-  204 (459)
T ss_pred             HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHHH--hcc-
Confidence            356777889999999999888888899999998755      78899999999999999999999999876541  110 


Q ss_pred             HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223           94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK  173 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  173 (411)
                      ...-..+++...+ ..+..+.      ++.+   .+..+                                     |.|.
T Consensus       205 ~~ghT~LG~~l~~-~~~tc~~------slic---al~lg-------------------------------------~~D~  237 (459)
T KOG4686|consen  205 GVGHTLLGLWLCF-EVKTCKQ------SLIC---ALSLG-------------------------------------LSDD  237 (459)
T ss_pred             cchHHHHHHHHHH-HHHHHHH------HHHH---HHHhh-------------------------------------hhhh
Confidence            1111111211111 0000000      0000   00000                                     0000


Q ss_pred             -hhhhhccCCCCCCCCcccccchhHHHHHHHH-hHHHHHHHHHHHHHHHh---hhhHHHHHHHHhhcccCCCCeeeCCcc
Q 015223          174 -ACIKVEDGTNKKESPWRLCTVTQVEQVKVLI-SVVPIFACTIIFNTILA---QLQTFSVQQGSAMNNKLTKNFHVPPAS  248 (411)
Q Consensus       174 -a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~l~~~~~~~~~~~~---q~~s~~~~~~~~~~~~~g~g~~i~~~~  248 (411)
                       |.-+...+.+..+..-|      .+|++..- .+-.+++.++.|+....   -....+ +|+     ++|    +++..
T Consensus       238 rAerilh~e~g~~Ge~pk------Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~f-F~~-----rfG----lS~~~  301 (459)
T KOG4686|consen  238 RAERILHLEEGFLGEEPK------LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMF-FQK-----RFG----LSAVS  301 (459)
T ss_pred             HHHHHHhhhcCcccCCcc------cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHH-HHH-----hhC----CChhh
Confidence             00000000000000001      02222211 11112222223332221   111121 121     233    44444


Q ss_pred             ccchhH---HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          249 LQSIPY---IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       249 l~~in~---l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      -.++++   ....++.|+.+.+.++++++.          +-+..+.++..++=..+.+..             .++|  
T Consensus       302 a~~i~s~vy~Isav~spvfg~i~Dk~G~n~----------~wv~~a~~~tl~~H~~l~Ft~-------------lsPy--  356 (459)
T KOG4686|consen  302 AGNILSTVYGISAVLSPVFGAISDKYGFNL----------WWVASACILTLLGHSGLFFTF-------------LSPY--  356 (459)
T ss_pred             ccchhhhhhhhhhhhhhhHHHhHhhhccee----------hhHHHHHHHHHHHhhhHHhhh-------------ccHH--
Confidence            455555   335677899999998887653          223444444444433333321             2332  


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT  385 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s  385 (411)
                       .+..++|++-.+..-...-.+...+|++.-|++-|+.+..+++|-.+.+.+++++...+
T Consensus       357 -~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~  415 (459)
T KOG4686|consen  357 -TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD  415 (459)
T ss_pred             -HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC
Confidence             24567788877777667778999999999999999999999999999999999886543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.36  E-value=0.003  Score=63.36  Aligned_cols=116  Identities=15%  Similarity=-0.016  Sum_probs=86.8

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+.+.+...+..++..|+.+++.+++.+|+.           +..+.++.+++++........     .    ..+.+++
T Consensus        54 ~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~-----------l~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~l  113 (417)
T PRK10489         54 VGLSVTLTGGAMFIGLMVGGVLADRYDRKKL-----------ILLARGTCGLGFIGLALNAFL-----P----EPSLLAI  113 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhcCCceE-----------EEehHHHHHHHHHHHHHHHHc-----C----CCcHHHH
Confidence            4556677778888889999998877765531           345666666666655432110     0    1356667


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ....++.+++..+..++..+.+.+..|++.++.++++++...++|..+|+.+++.+
T Consensus       114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l  169 (417)
T PRK10489        114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL  169 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence            77788999999988888888999999999999999999999999999888887765

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.36  E-value=0.0018  Score=66.78  Aligned_cols=116  Identities=11%  Similarity=0.067  Sum_probs=88.0

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      ++.+...+..++..++.+++.++++||+           -+.++.++.+++.++.+...        .+....+.++++.
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~-----------~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~  120 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRKR-----------VYGMELIIMIIATVASGLSP--------GSSPKSVMATLCF  120 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHH-----------HHHHHHHHHHHHHHHHHHcc--------CcccchHHHHHHH
Confidence            3456666777788888888887776653           24567777777766655432        0000123567888


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ..+++|+++....+....++.+..|++.||.++++.+....+|..+++.+...+.
T Consensus       121 ~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887       121 WRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999888899999999999999999999999999999998877553

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.36  E-value=0.00048  Score=67.16  Aligned_cols=104  Identities=13%  Similarity=0.012  Sum_probs=84.6

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +++.++..+...+..++.+++.+++.+|+           -+.+|.++.+++.++.+...              +.++++
T Consensus        33 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~   87 (379)
T TIGR00881        33 GLLLSSFSIAYGISKFVMGSVSDRSNPRV-----------FLPIGLILCAIVNLFFGFST--------------SLWVMA   87 (379)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhhCCee-----------hhHHHHHHHHHHHHHHHHhh--------------hHHHHH
Confidence            44566677777888888898887766542           25678888888887777652              567777


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHh
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS  375 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~  375 (411)
                      ...++.++++....+...+++.+..|++.|+.++|++.....+|..+++
T Consensus        88 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  136 (379)
T TIGR00881        88 ALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP  136 (379)
T ss_pred             HHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence            8889999999999988889999999999999999999999999998888

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.35  E-value=0.003  Score=63.94  Aligned_cols=113  Identities=13%  Similarity=-0.005  Sum_probs=82.3

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.++..+...+..++.+++.+++.+|+           -+..+.++.+++.+..+....          ...+.+.+
T Consensus        63 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l  121 (438)
T TIGR00712        63 LGFALSAISIAYGFSKFIMGSVSDRSNPRV-----------FLPAGLILSAAVMLLMGFVPW----------ATSSIAIM  121 (438)
T ss_pred             hHHHHHHHHHHHHHhhhccchhhhccCCce-----------ehHHHHHHHHHHHHHHhcccc----------ccchHHHH
Confidence            344556666777788888888887665442           245677777777776654321          01245556


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVS  379 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~  379 (411)
                      ....++.++++....+...+.+.+..|++.||.++|+++...++|+.+++.+..
T Consensus       122 ~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~  175 (438)
T TIGR00712       122 FVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL  175 (438)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence            677788999999888777788999999999999999999998888888765544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.00059  Score=66.79  Aligned_cols=115  Identities=12%  Similarity=0.129  Sum_probs=98.0

Q ss_pred             eCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchH
Q 015223          244 VPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIF  323 (411)
Q Consensus       244 i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~  323 (411)
                      ...+++...-+++.++.-|+.+.+.++++.|           .-|.+|++++.++-++.++.+              +.+
T Consensus       106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~-----------ipm~~Gl~vmf~sTilFafg~--------------sy~  160 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYK-----------IPMVAGLFVMFLSTILFAFGN--------------SYP  160 (464)
T ss_pred             cchhHHHHHHHHHHHHhcccchhhHHHhccc-----------cHHHHHHHHHHHHHHHHHHcc--------------hhH
Confidence            3456667777788899999999998766654           226899999999999999875              566


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhH-HHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          324 SITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM-QAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       324 ~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~-~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      .++.+-+++|+|..+.+...++++++.-|++. ||.+||+.....++|..+|+.+++.++.
T Consensus       161 ~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe  221 (464)
T KOG3764|consen  161 MLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE  221 (464)
T ss_pred             HHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh
Confidence            78889999999999999888899999988877 5999999999999999999999998765

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.33  E-value=0.0042  Score=63.30  Aligned_cols=121  Identities=13%  Similarity=0.032  Sum_probs=86.8

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      +..+...+...+.+++.+++.++++||+           -+.++.++.+++.+..+..+........ +. ...+.+++.
T Consensus        59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~-----------~~~~~~~l~~i~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~  125 (479)
T PRK10077         59 FCVASALIGCIIGGALGGYCSNRFGRRD-----------SLKIAAVLFFISALGSAWPEFGFTSIGP-DN-TGYVPEFVI  125 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHHHHHHHHhhccccccccc-cc-hhHHHHHHH
Confidence            4456666778888999999888777663           2466777777776666653211110000 00 123455677


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ..+++|++.....+...+++.+..|++.||.++|++.....+|..+++.+....
T Consensus       126 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  179 (479)
T PRK10077        126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI  179 (479)
T ss_pred             HHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999988889999999999999999999999999988887665544

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.32  E-value=0.0096  Score=60.45  Aligned_cols=98  Identities=9%  Similarity=0.058  Sum_probs=79.9

Q ss_pred             HHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHH
Q 015223          258 VILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEM  337 (411)
Q Consensus       258 ll~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~  337 (411)
                      .+...+.+.+.++++.|           +-+.++++..++..++.++..              +++.+....++.|++|.
T Consensus        76 al~qIp~GlLaDrlG~K-----------~vL~l~~l~Wsl~t~L~~fa~--------------Sl~~L~i~R~llGvaEA  130 (511)
T TIGR00806        76 LAVLVPVFLLTDYLRYK-----------PVLVLQALSFVCVWLLLLLGT--------------SVWHMQLMEVFYSVTMA  130 (511)
T ss_pred             HHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence            45555566666555433           335677777777777777653              67788889999999999


Q ss_pred             HHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          338 FTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       338 l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ... +.+.++++..|++.|++++|++.....+|..+++.+++.+
T Consensus       131 ~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       131 ARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999 8889999999999999999999999999999999999984

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.28  E-value=0.0071  Score=60.04  Aligned_cols=111  Identities=11%  Similarity=0.032  Sum_probs=83.5

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      ++..++..+..++..|+.+.+.+++.||+           -+..+.++.+++.+.....              .+.+++.
T Consensus        46 ~~~~~~~~~~~~~~~~~~G~l~Dr~grr~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l~  100 (394)
T PRK11652         46 QAVMAAYLLTYGLSQLFYGPLSDRVGRRP-----------VILVGMSIFILGTLVALFA--------------HSLTVLI  100 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhcCChH-----------HHHHHHHHHHHHHHHHHHH--------------ccHHHHH
Confidence            34456666777788888898887665542           2456777777776665543              2566777


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ...++.+++.....+...++..+..|++.++.+++.+.+...+|..+|+.+.+.+.
T Consensus       101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  156 (394)
T PRK11652        101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT  156 (394)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999988877777778888899999999999999999988888888777653

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.26  E-value=0.053  Score=53.57  Aligned_cols=68  Identities=15%  Similarity=0.069  Sum_probs=57.0

Q ss_pred             cccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc
Q 015223           10 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT   83 (411)
Q Consensus        10 ~~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~   83 (411)
                      .|+.....+|..++.+++.|.|..+...++++++.-++++..+      =.++-.....+|+.++|.+++++..
T Consensus        98 Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~------rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738          98 AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAF------RLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHH------HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            3556778899999999999999999999999999999865322      2666677778899999999998866

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.25  E-value=0.0037  Score=61.97  Aligned_cols=109  Identities=9%  Similarity=0.001  Sum_probs=75.8

Q ss_pred             ccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223          249 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ  328 (411)
Q Consensus       249 l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~  328 (411)
                      +.+...+...+.++..+.+.+|+.||+            +..+.++..+........             ..++++++..
T Consensus        31 ~~s~~~~g~~i~~~~~G~l~Dr~grr~------------~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~   85 (368)
T TIGR00903        31 LAITYPAAFLALTIPSGLLLDRAFKRW------------FLFGSLATFAAAAGRLLD-------------PFNYEWLLAC   85 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchH------------HHHHHHHHHHHHHHHHHH-------------hccHHHHHHH
Confidence            344444556677788888887776432            233333333222211111             1368889999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          329 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       329 ~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      .+++|+||.... +....+.+..|++.|+.++++......+|..+++.++..+..
T Consensus        86 R~l~G~g~~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~  139 (368)
T TIGR00903        86 QLLAALGQPFLL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT  139 (368)
T ss_pred             HHHHHhHhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999644 444667899999999999999999999999999988887643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.20  E-value=0.0008  Score=65.56  Aligned_cols=78  Identities=18%  Similarity=0.175  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHH
Q 015223           18 IFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAA   97 (411)
Q Consensus        18 ~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~   97 (411)
                      .++....+.+++.|...+...++..|.+++++      |++++++++...++|..++|.+.|++.++.||++.|.+.++.
T Consensus       297 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~  370 (377)
T TIGR00890       297 LFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAF  370 (377)
T ss_pred             HHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Confidence            34455667788888888888899999998654      799999999999999999999999999999999999988766


Q ss_pred             HHHH
Q 015223           98 MALG  101 (411)
Q Consensus        98 ~~l~  101 (411)
                      .+++
T Consensus       371 ~~~~  374 (377)
T TIGR00890       371 ALTS  374 (377)
T ss_pred             HHHh
Confidence            5554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.20  E-value=0.0087  Score=60.87  Aligned_cols=105  Identities=13%  Similarity=-0.045  Sum_probs=77.5

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      ...+...+...+..|+.+.+.+++.+|+           -+.++.++.+++.+..++...         . ..+.++++.
T Consensus        67 ~~~~~~~i~~~~~~~~~G~l~Dr~g~k~-----------~l~~~~~~~~i~~~~~~~~~~---------~-~~~~~~~~~  125 (452)
T PRK11273         67 FALSGISIAYGFSKFIMGSVSDRSNPRV-----------FLPAGLILAAAVMLFMGFVPW---------A-TSSIAVMFV  125 (452)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhccCCch-----------hHHHHHHHHHHHHHHHHhhhc---------c-cccHHHHHH
Confidence            3445555667788889898887665542           256787888888877776531         0 124666777


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHH
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYL  373 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~l  373 (411)
                      ..++.++++....++....+.+..|++.|+.++|+++....+|+.+
T Consensus       126 ~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  171 (452)
T PRK11273        126 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGL  171 (452)
T ss_pred             HHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhH
Confidence            7889999999887766678888999999999999998888877643

>TIGR00898 2A0119 cation transport protein

Probab=97.19  E-value=0.0016  Score=67.06  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=87.5

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +..+++..+..++..++.+.+.++++||+           -+.++.++.+++.+..++.              .+.++++
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~-----------~~~~~~~~~~i~~~~~~~~--------------~~~~~~~  184 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKK-----------VLLLSTLVTAVSGVLTAFS--------------PNYTVFL  184 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHc--------------ccHHHHH
Confidence            45677777888888999999887766552           1456777777766666543              3677788


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ...++.|++.....+....++.+..|++.|+.++++......+|..+++.++..+
T Consensus       185 ~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  239 (505)
T TIGR00898       185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI  239 (505)
T ss_pred             HHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999988889999999999999999999999999988888776543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.17  E-value=0.0014  Score=66.74  Aligned_cols=84  Identities=11%  Similarity=-0.046  Sum_probs=68.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 015223          287 RIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCS  366 (411)
Q Consensus       287 k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~  366 (411)
                      -+.+|++.-.++..+.++..              .. |++-...+....-.+..|+..+++.++++++.+|..+++....
T Consensus       310 ~i~lGl~~~~~~~~~~af~~--------------~~-w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i  374 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFAT--------------ET-WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGI  374 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhc--------------cc-hhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHH
Confidence            35789999999999999874              23 3332334555666677799999999999999999999999999


Q ss_pred             HhHHHHHHhHhhhhhcccc
Q 015223          367 YSFGFYLSSLLVSFVNKVT  385 (411)
Q Consensus       367 ~~~G~~lg~~l~~~~~~~s  385 (411)
                      .++.+.+++.+-+.+...+
T Consensus       375 ~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  375 EGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             HHHhhhhhHHHHHHHHHHH
Confidence            9999999999999887776

>PRK11043 putative transporter; Provisional

Probab=97.16  E-value=0.011  Score=58.89  Aligned_cols=111  Identities=13%  Similarity=0.007  Sum_probs=82.1

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +++.++..+...+..++.+++.+++.+|+           -+..+.++.+++.+.....              .+.+++.
T Consensus        44 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l~   98 (401)
T PRK11043         44 SASLSLFLAGFALGQLLWGPLSDRYGRKP-----------VLLAGLSLFALGSLGMLWV--------------ESAAQLL   98 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHhhcCCcH-----------HHHHHHHHHHHHHHHHHHh--------------cCHHHHH
Confidence            34556666777788888888887665442           2466777777777666553              2567777


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ...++++++.....+...+.+.+..|++.++.+.+..+...++|..+++.+++.+.
T Consensus        99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  154 (401)
T PRK11043         99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL  154 (401)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999988777766688899999999988888888777888888877776553

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.15  E-value=0.039  Score=56.13  Aligned_cols=85  Identities=9%  Similarity=-0.096  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHH---
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGF---   91 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F---   91 (411)
                      +...+.+.+++.|++.|... .....+...+|+++      |.++.++...+.++|.++++.+++++. ++||+.-+   
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln  185 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN  185 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence            57788899999999999999 99999999998644      899999999999999999999999954 68998644   


Q ss_pred             HHHHHHHHHHHHHHhh
Q 015223           92 GVSAAAMALGLFGVVS  107 (411)
Q Consensus        92 ~i~~~~~~l~~i~~~~  107 (411)
                      .|+.....+++++-++
T Consensus       186 ~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       186 IISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            4555555556554443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.15  E-value=0.016  Score=59.66  Aligned_cols=73  Identities=22%  Similarity=0.237  Sum_probs=62.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccccCCCCCCC
Q 015223          321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGW  393 (411)
Q Consensus       321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s~~~~~~~w  393 (411)
                      +.+.++.-.+++|+-|....|+...+..+--.++.||..+|+|+...++|+++|++++..+.+.....+..+|
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW  205 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW  205 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence            5777788889999999999999999999999999999999999999999999999999986543333334455

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.14  E-value=0.0029  Score=65.10  Aligned_cols=110  Identities=13%  Similarity=0.102  Sum_probs=80.1

Q ss_pred             HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223          255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL  334 (411)
Q Consensus       255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i  334 (411)
                      +...+.+++.+++.++++||+           -+.+++++.+++.+..++....-.    - + ...+.+++...+++|+
T Consensus        68 l~~~ig~~~~G~l~Dr~Grr~-----------~l~~~~~l~~i~~~~~a~~~~~~~----~-g-~~a~~~l~~~R~l~G~  130 (490)
T PRK10642         68 LIRPLGGLFFGMLGDKYGRQK-----------ILAITIVIMSISTFCIGLIPSYAT----I-G-IWAPILLLLCKMAQGF  130 (490)
T ss_pred             HHHHHHHHHHHHHHHhcccHH-----------HHHHHHHHHHHHHHHHHhcccHHH----H-H-HHHHHHHHHHHHHHHh
Confidence            344566777777777666553           367888888888888887642100    0 0 0112246778899999


Q ss_pred             HHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          335 SEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       335 ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      |+....++...++.+..|++.||.+++++.....+|..+|+.+...+
T Consensus       131 g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~  177 (490)
T PRK10642        131 SVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI  177 (490)
T ss_pred             HhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988889999999999999999999888888888877655443

>TIGR00897 2A0118 polyol permease family

Probab=97.14  E-value=0.01  Score=59.37  Aligned_cols=114  Identities=15%  Similarity=0.070  Sum_probs=81.2

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+...+...+...+..|+.+++.++..+|+           -+..+.++.+++.+.......       .   ..+.+.+
T Consensus        50 ~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~-----------~l~~~~~~~~~~~~~~~~~~~-------~---~~~~~~l  108 (402)
T TIGR00897        50 SASAFTLYGIAAAISAWISGVVAEIIGPLK-----------TMMIGLLLWCVGHAAFIVFGL-------G---HANYPLI  108 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----------HHHHHHHHHHHHHHHHHHHhc-------c---CccHHHH
Confidence            344566677778888999999887665542           245677777776554432210       0   1245556


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHH-HHHhHhhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGF-YLSSLLVSF  380 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~-~lg~~l~~~  380 (411)
                      ...+++.++|.....+.....+.+..|++.|+.++|++....++|. .+|+.+.+.
T Consensus       109 ~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~  164 (402)
T TIGR00897       109 LLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY  164 (402)
T ss_pred             HHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6778889999887777776788889999999999999999988886 567766543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.11  E-value=0.005  Score=69.95  Aligned_cols=115  Identities=9%  Similarity=-0.015  Sum_probs=87.0

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      ++..++..+..+++.|+.+++.+++++|+           -+..+.++.+++.+...+...           ..++++++
T Consensus        50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk~-----------~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~  107 (1146)
T PRK08633         50 AIVNALFLLPFLLLSSPAGFLADKFSKNR-----------VIRIVKLFEVGLTLLIVLAYY-----------LGWFWLAF  107 (1146)
T ss_pred             HHHHHHHHHHHHHHhhhHhhhcccccHHH-----------HHHHHHHHHHHHHHHHHHHHH-----------HccHHHHH
Confidence            44556666777888999999988776653           134454444444433333211           12577788


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ...+++|++..+..+..++++.+..|++.|+.++|+.....++|..+|+.+++.+..
T Consensus       108 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633        108 AVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999988999999999999999999999999999999999887654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.11  E-value=0.038  Score=54.85  Aligned_cols=86  Identities=14%  Similarity=0.146  Sum_probs=65.1

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 015223          286 QRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYC  365 (411)
Q Consensus       286 ~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l  365 (411)
                      +.+..|+++..+.++.....+             .+....+.. .+.+....-+....=++..+.+||+..+...|++.+
T Consensus       319 ~vl~~~lvi~~~~~~~~~~~~-------------~~~~f~i~g-ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyal  384 (438)
T COG2270         319 PVLMIGLVILSIAALYLIFLE-------------GELDFWILG-LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYAL  384 (438)
T ss_pred             eeehHHHHHHHHHHHHHHHcc-------------ccHHHHHHH-HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhh
Confidence            445677777666666655553             123333333 566777777775555799999999999999999999


Q ss_pred             HHhHHHHHHhHhhhhhcccc
Q 015223          366 SYSFGFYLSSLLVSFVNKVT  385 (411)
Q Consensus       366 ~~~~G~~lg~~l~~~~~~~s  385 (411)
                      +...++.+|+.+.+.+...|
T Consensus       385 tgra~S~~gp~lv~v~t~iT  404 (438)
T COG2270         385 TGRAASFLGPFLVAVITQIT  404 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHh
Confidence            99999999999999988776

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.08  E-value=0.0035  Score=64.65  Aligned_cols=108  Identities=11%  Similarity=0.009  Sum_probs=79.7

Q ss_pred             hhHHHHHHHHHhhhHhHHh-hhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223          252 IPYIMLVILVPLYDKFFVP-FARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL  330 (411)
Q Consensus       252 in~l~ill~~p~~~~l~~~-~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~  330 (411)
                      .......++.|+.+++-++ +++|           +-+.+|.++.+++.+.+++..             .....+....+
T Consensus        58 ~~~~~~~~~~~~~G~laDr~~G~r-----------~~~~~g~~~~~~g~~~~~~~~-------------~~~~ll~~~~~  113 (489)
T PRK10207         58 AFAALVYGLISIGGYVGDHLLGTK-----------RTIVLGAIVLAIGYFMTGMSL-------------LKPDLIFIALG  113 (489)
T ss_pred             HHHHHHHHHHhhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHHhc-------------cchhHHHHHHH
Confidence            3334455666777888776 5544           336788888888888877642             11112445678


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhhh--HHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          331 IFGLSEMFTAVGLIEFFYKQSLKG--MQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       331 l~~ige~l~~~~~~~~~~~~aP~~--~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ++++|+.+..+...+++.++.|++  .|+...+++++..++|..+|+.+++.+..
T Consensus       114 l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~  168 (489)
T PRK10207        114 TIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD  168 (489)
T ss_pred             HHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999888789999999887  45778999999999999999888877644

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.03  E-value=0.0031  Score=71.72  Aligned_cols=112  Identities=7%  Similarity=0.034  Sum_probs=82.9

Q ss_pred             cchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHH
Q 015223          250 QSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQF  329 (411)
Q Consensus       250 ~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~  329 (411)
                      .++..+..++++|+.+++.+++.+|+        ....+..+.++. .+.....+.             ..++++++...
T Consensus        58 ~~~~~l~~~l~~~~~G~laDr~~rk~--------~~~~~~~~~~~~-~~~~~~~~~-------------~~s~~~l~~~~  115 (1140)
T PRK06814         58 GAVFILPFFIFSALAGQLADKYDKAK--------LAKILKFAEIGI-AALAIYGFH-------------LNSVPLLFAAL  115 (1140)
T ss_pred             HHHHHHHHHHHhhhHHhhhhhccHHH--------HHHHHHHHHHHH-HHHHHHHHH-------------HhhHHHHHHHH
Confidence            44555667888999999998887663        111111111111 111122221             13688888899


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          330 LIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       330 ~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      +++|+++.+..|...+++.+..|++.++.++|+.....++|..+|+.+++.+..
T Consensus       116 ~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~  169 (1140)
T PRK06814        116 FLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI  169 (1140)
T ss_pred             HHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998754

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.01  E-value=0.00091  Score=68.21  Aligned_cols=85  Identities=9%  Similarity=0.003  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc-cchhHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-GMDVGFGV   93 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~-g~~~~F~i   93 (411)
                      +.+.+++.+++.+++.|...++..+++.|.+++++      ++++++++....++|..+||.++|++.+.. +|+..|.+
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~  405 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYA  405 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHH
Confidence            35566778888999999999999999999987644      789999999999999999999999999877 59999999


Q ss_pred             HHHHHHHHHHHH
Q 015223           94 SAAAMALGLFGV  105 (411)
Q Consensus        94 ~~~~~~l~~i~~  105 (411)
                      .++..+++.+..
T Consensus       406 ~~~~~li~~~~~  417 (455)
T TIGR00892       406 SGSIVVSAGLFL  417 (455)
T ss_pred             hhHHHHHHHHHH
Confidence            887766665543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.00  E-value=0.013  Score=59.28  Aligned_cols=109  Identities=17%  Similarity=0.136  Sum_probs=78.4

Q ss_pred             HHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHH
Q 015223          257 LVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSE  336 (411)
Q Consensus       257 ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige  336 (411)
                      ..+.+++.+++-++++||+           -+..++++.+++.+..++....-    .. + ..++.+++...+++|+|+
T Consensus        76 ~~ig~~~~G~l~Dr~Grr~-----------~l~~~~~~~~~~~~~~~~~~~~~----~~-~-~~~~~~l~~~R~l~G~g~  138 (432)
T PRK10406         76 RPIGGWLFGRIADKHGRKK-----------SMLISVCMMCFGSLVIACLPGYE----TI-G-TWAPALLLLARLFQGLSV  138 (432)
T ss_pred             HHHHHHHHHHHHHhcCcHH-----------HHHHHHHHHHHHHHHHhhcCCch----hH-H-HHHHHHHHHHHHHHHhhh
Confidence            3355666677776666542           35778888888887776643100    00 0 123456778889999999


Q ss_pred             HHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          337 MFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       337 ~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ....+....++.+..|++.||.+++++......|..+++.+...+.
T Consensus       139 g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  184 (432)
T PRK10406        139 GGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ  184 (432)
T ss_pred             hhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888899999999999999999998888888888776655443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.98  E-value=0.0029  Score=67.32  Aligned_cols=127  Identities=14%  Similarity=0.045  Sum_probs=91.4

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhh--c----------
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDS--A----------  313 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~--~----------  313 (411)
                      .+++.+.+.+...+..++.+.+-.+..|           ++-+++|.++.++|.++.++.+....++  .          
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r-----------~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSYFGTKLHR-----------PIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHHhhcccCc-----------ceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            3456666677777777777766544332           2336889999999999888764221000  0          


Q ss_pred             ----------------------ccC-CC--ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 015223          314 ----------------------LDS-GK--TLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYS  368 (411)
Q Consensus       314 ----------------------~~~-~~--~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~  368 (411)
                                            .+. +.  ...+..++...+++|+|+....+...+++.+..|++.|+.++|+++....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence                                  000 00  01244566788999999999997777999999999999999999999999


Q ss_pred             HHHHHHhHhhhhhcc
Q 015223          369 FGFYLSSLLVSFVNK  383 (411)
Q Consensus       369 ~G~~lg~~l~~~~~~  383 (411)
                      +|..+|..+++.+..
T Consensus       219 iG~~lG~llgg~l~~  233 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQ  233 (633)
T ss_pred             hhhHHHHHHHHHHHh
Confidence            999999998887654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.90  E-value=0.0061  Score=62.62  Aligned_cols=112  Identities=13%  Similarity=0.021  Sum_probs=83.6

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHh-hhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVP-FARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~-~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      +.+.....+...+..++.+++.++ +++|+           -+..|.++.+++.+++++..              +.+++
T Consensus        51 g~~~~~~~~~~~~~~~~~G~laDr~~G~~~-----------~l~~~~~~~~~g~~~~~~~~--------------~~~~~  105 (475)
T TIGR00924        51 FIIFGAYSALVYLLTSVGWWFGDRVWGTKK-----------TMVLGGIVLMLGHFMLAMSI--------------YPDLI  105 (475)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhcchHH-----------HHHHHHHHHHHHHHHHHhcc--------------cHhHH
Confidence            344555556667777777877776 45442           25778888888887776532              34556


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhH---HHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGM---QAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~---~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ....++.++|+.+..+....++.++.|++.   |+.+.++++...++|..+|+.+.+.+..
T Consensus       106 ~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~  166 (475)
T TIGR00924       106 FYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE  166 (475)
T ss_pred             HHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence            667788999999988888889999998754   8888999999999999999988876543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.89  E-value=0.0025  Score=62.46  Aligned_cols=84  Identities=12%  Similarity=-0.018  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223           16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA   95 (411)
Q Consensus        16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~   95 (411)
                      .+..++...+.+++.|...|...+...|..|+ +      +++++++++...++|..++|.++|++.+..||+..|++.+
T Consensus       288 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~  360 (375)
T TIGR00899       288 LWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAI  360 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            34455566677888888888888888887753 2      4689999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHh
Q 015223           96 AAMALGLFGVV  106 (411)
Q Consensus        96 ~~~~l~~i~~~  106 (411)
                      +..+++.+...
T Consensus       361 ~~~~~~~~~~~  371 (375)
T TIGR00899       361 VMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHh
Confidence            77777666554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.88  E-value=0.0081  Score=62.36  Aligned_cols=116  Identities=14%  Similarity=0.140  Sum_probs=87.8

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+.++....+..+++.|+.+.+.+++.||+           -+..+-++.++..+.+++....        + ..++|.+
T Consensus        47 valv~~a~~LP~~Llsl~aG~laDr~drrr-----------ili~~~~~~~~~~~~L~~l~~~--------~-~~~~~~L  106 (524)
T PF05977_consen   47 VALVQAASTLPILLLSLFAGALADRFDRRR-----------ILILSQLLRALVALLLAVLAFF--------G-LLSPWLL  106 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchH-----------HHHHHHHHHHHHHHHHHHHHHh--------C-cCCHHHH
Confidence            455677788899999999999998876653           1334444444443333333210        1 3677777


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ....++.+++..+..|+.++.+-+.+|++....+++++.+..+++..+|+.+++.+
T Consensus       107 l~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L  162 (524)
T PF05977_consen  107 LILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL  162 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            78889999999999999999999999999999999999988888888888777764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=96.86  E-value=0.025  Score=58.06  Aligned_cols=104  Identities=11%  Similarity=0.028  Sum_probs=70.9

Q ss_pred             chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223          251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL  330 (411)
Q Consensus       251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~  330 (411)
                      +...+...+..++.+++.+++.+|+           .+..+.++.+++.++.+...              +.+.+....+
T Consensus        78 ~~~~~~~~~~~~~~G~l~dr~G~r~-----------~~~~~~~~~~~~~~~~~~~~--------------s~~~l~~~r~  132 (476)
T PLN00028         78 IASVSGSIFSRLAMGPVCDLYGPRY-----------GSAFLLMLTAPAVFCMSLVS--------------SATGFIAVRF  132 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChH-----------HHHHHHHHHHHHHHHHHHhc--------------CHHHHHHHHH
Confidence            3444455566778888776665442           24567777777766665532              4555666778


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhh
Q 015223          331 IFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSF  380 (411)
Q Consensus       331 l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~  380 (411)
                      ++|+++....+ ...++.+..|++.||.++|+++....+|..+++.+...
T Consensus       133 l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~  181 (476)
T PLN00028        133 FIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL  181 (476)
T ss_pred             HHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999986544 44678899999999999999987766777666555443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=96.83  E-value=0.0055  Score=60.69  Aligned_cols=83  Identities=16%  Similarity=0.109  Sum_probs=75.0

Q ss_pred             CchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHH
Q 015223          283 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM  362 (411)
Q Consensus       283 s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~  362 (411)
                      ++..-+..|+++.++..+++++.+              |++.++.-+++.|.-+..-.|+....+++--|++.||...++
T Consensus        92 npr~fm~~gLilsai~nil~Gfs~--------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~si  157 (448)
T COG2271          92 NPRYFMAFGLILSAIVNILFGFSP--------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSI  157 (448)
T ss_pred             CCceeehHHHHHHHHHHHHHhhhh--------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEE
Confidence            555667899999999999999863              677788889999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHhHhhh
Q 015223          363 TYCSYSFGFYLSSLLVS  379 (411)
Q Consensus       363 ~~l~~~~G~~lg~~l~~  379 (411)
                      |+.+.++|+.+.+.+..
T Consensus       158 Wn~shNiGGal~~~~~~  174 (448)
T COG2271         158 WNTSHNIGGALAPLVAL  174 (448)
T ss_pred             ehhhhhcccchHHHHHH
Confidence            99999999999999984

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.79  E-value=0.007  Score=62.76  Aligned_cols=110  Identities=15%  Similarity=0.071  Sum_probs=93.3

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +++.+...+...+..++.+++.++++||.           -+.++.++..+|.++.+...              ++++++
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~-----------~l~~~~~~~~iG~ii~~~a~--------------~~~~l~  146 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKK-----------TLLLAVVLFLIGAIIIALAP--------------SWYQLI  146 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHhh--------------hHHHHH
Confidence            67788888888999999999998888764           25788888888888888752              788999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ...++.|+|-.+.+.....++.+.+|++.||...++..+...+|..++-.+....
T Consensus       147 ~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  147 VGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             HHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999977778999999999999999999999999998884443333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.79  E-value=0.071  Score=55.18  Aligned_cols=313  Identities=11%  Similarity=0.025  Sum_probs=158.3

Q ss_pred             chHHHHHHHHHH-HHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223           14 FKASIFFLALYL-VAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFG   92 (411)
Q Consensus        14 ~~~~~~~~~l~l-~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~   92 (411)
                      .+.+.+++...+ .++|.|+.......+++..|++       +|..+-++--.+..+|.++=|.+.-++.+.+|||..++
T Consensus       132 ~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-------kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l  204 (509)
T KOG2504|consen  132 TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-------KRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALL  204 (509)
T ss_pred             hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-------HHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHH
Confidence            345556655554 8999999999999999988863       27889999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhhcccceeccCCCCCcc--hhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhh
Q 015223           93 VSAAAMALGLFGVVSGTLYYRNKRPQGSIF--TPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRF  170 (411)
Q Consensus        93 i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (411)
                      +=+...+-..+.-...+..-    +..+|.  .|...          .....+. .....+...   .....++.. ..-
T Consensus       205 ~~~~~~l~~~~~~~~~rp~~----~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~---~~~~~~~~~-~~~  265 (509)
T KOG2504|consen  205 IFGGISLNVLVAGALLRPLS----PPKKPNEEKDLRN----------SAASVES-TPKPVELRI---SERDSGLKK-LSL  265 (509)
T ss_pred             HHHHHHHHHHHHHHHcCCCC----cCCCchhhhhhcc----------ccccccc-ccccccccc---ccCCCCCCc-ccc
Confidence            76655543333333332211    111111  00000          0000000 000000000   000000000 000


Q ss_pred             hhhhhhhhccCCCCCCC-CcccccchhHHHHHHHH-hHHHHHHHHHHHHHHHhhhhHHH-HHHHHhhcccCCCCeee-CC
Q 015223          171 LDKACIKVEDGTNKKES-PWRLCTVTQVEQVKVLI-SVVPIFACTIIFNTILAQLQTFS-VQQGSAMNNKLTKNFHV-PP  246 (411)
Q Consensus       171 l~~a~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~l~l~~~~~~~~~~~~q~~s~~-~~~~~~~~~~~g~g~~i-~~  246 (411)
                      .+.......+.  +..+ ..+  +.....|.+.+. +...+++....+..+-...+..+ .....  +.  +  ++- ..
T Consensus       266 ~~~~~~~~~~~--~~~~~~~~--~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~--~~--g--~~~~~a  335 (509)
T KOG2504|consen  266 SNLATLKRGPD--KWRNSPLQ--AFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK--SL--G--LSSNDA  335 (509)
T ss_pred             cchhhhhhCCc--cccccchh--hhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc--C--CChhhh
Confidence            00000000000  0000 000  000000111111 11112222222222222222222 11111  11  1  111 12


Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +.+.++-.+.-++.-++++.+-++-.         ++...-+.++++..+++.+++.+.              .+.+-++
T Consensus       336 a~l~Siigi~~i~gRi~~G~laD~~~---------~~~~~~~~~~ll~~gl~~~~~p~~--------------~~~~~l~  392 (509)
T KOG2504|consen  336 AFLLSIIGVSDIIGRIILGLLADKPG---------IRALVLFLLTLLIAGLARLFLPFA--------------TTYVGLI  392 (509)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhcCccc---------cchHHHHHHHHHHHHHHHHHHHHh--------------ccHHHHH
Confidence            22233333334444444444332111         133444567777777777555554              3556677


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT  385 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s  385 (411)
                      ...++.|+.......-......+..+.+.-+.+.|+..+..+++..+|+-+.+.+...+
T Consensus       393 ~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t  451 (509)
T KOG2504|consen  393 VFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT  451 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc
Confidence            77788899888887555468899999999999999999999999999999999665544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.79  E-value=0.017  Score=57.61  Aligned_cols=107  Identities=7%  Similarity=0.068  Sum_probs=76.4

Q ss_pred             HHHHHhhhHhHHhhhhhccCCCCCCCchhH-HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHH
Q 015223          258 VILVPLYDKFFVPFARKYTGHESGISPLQR-IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSE  336 (411)
Q Consensus       258 ll~~p~~~~l~~~~~~~~~~~~~~~s~~~k-~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige  336 (411)
                      .++.|+.+.+.+++..+.      ....++ +..+.++.++++..+++.+.           ..+++++...+++.+...
T Consensus        46 ~~~~~l~g~~~Dr~~~~~------~g~rr~~l~~~~~~~~l~~~~l~~~~~-----------~~~~~~l~~~~~~~~~~~  108 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPL------LGRRRGWLLLTQVGLAASIAAMAFCPP-----------HAALWPLAGLAVLVAFLS  108 (402)
T ss_pred             HHHHHHHHHHHHcccccC------CCcchhHHHHHHHHHHHHHHHHHhcCc-----------cchHHHHHHHHHHHHHHH
Confidence            466777777776652110      011122 56667777777776665420           135666777778888888


Q ss_pred             HHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          337 MFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       337 ~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ....+...+++.+..|++.|+.+.++.....++|..+++.+...+
T Consensus       109 ~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l  153 (402)
T PRK11902        109 ASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL  153 (402)
T ss_pred             HHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            888899999999999999999999999988889999988766554

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.78  E-value=0.062  Score=57.20  Aligned_cols=91  Identities=16%  Similarity=0.148  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc----------
Q 015223           16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS----------   85 (411)
Q Consensus        16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~----------   85 (411)
                      ..+++++.++.++|.--+.|.-.+.+=|..++++      -...+++.|..--+|+++|.++++++.+.|          
T Consensus       237 ~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~i  310 (735)
T KOG3626|consen  237 FLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGI  310 (735)
T ss_pred             HHHHHHHHHHhhcCCCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCC
Confidence            4578889999999999999888888777776544      477999999999999999999999874321          


Q ss_pred             ---------cchhHHHHHHHHHHHHHHHHhhcccce
Q 015223           86 ---------GMDVGFGVSAAAMALGLFGVVSGTLYY  112 (411)
Q Consensus        86 ---------g~~~~F~i~~~~~~l~~i~~~~~~~~~  112 (411)
                               -|+.+|++++.++++..+-+++.-|.+
T Consensus       311 t~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  311 TPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence                     488999999999888888777765544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.78  E-value=0.044  Score=55.91  Aligned_cols=104  Identities=10%  Similarity=0.028  Sum_probs=67.6

Q ss_pred             cchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHH
Q 015223          250 QSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQF  329 (411)
Q Consensus       250 ~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~  329 (411)
                      .+++.+.-.++...++.+.++++.|           +-+.+++++.++..+..++...       +  ...|.+.+....
T Consensus        76 ~ai~~l~~al~rip~G~l~Dr~G~R-----------~v~~~~~ll~~i~~~~~~~a~~-------~--~~~s~~~lli~r  135 (462)
T PRK15034         76 TALPSVSGALLRVPYSFMVPIFGGR-----------RWTVFSTAILIIPCVWLGIAVQ-------N--PNTPFGIFIVIA  135 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHHHc-------c--cCCCHHHHHHHH
Confidence            3444444445534447766555543           3356777777777776665310       0  024777888889


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHH
Q 015223          330 LIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLS  374 (411)
Q Consensus       330 ~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg  374 (411)
                      ++.|++.. ..++....+.+..|++.||+++|++.....+|..++
T Consensus       136 ~l~Gigg~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~  179 (462)
T PRK15034        136 LLCGFAGA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVM  179 (462)
T ss_pred             HHHHHHHH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHH
Confidence            99999844 556666899999999999999999954444444433

>PTZ00207 hypothetical protein; Provisional

Probab=96.77  E-value=0.045  Score=57.52  Aligned_cols=100  Identities=9%  Similarity=0.020  Sum_probs=73.9

Q ss_pred             HHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHH
Q 015223          260 LVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFT  339 (411)
Q Consensus       260 ~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~  339 (411)
                      +.++.+++.+++++|           +-+.+|.++.+++.++.++...        +....+++.+....++.|+|+...
T Consensus        77 ~~lp~G~L~Dr~G~R-----------~vllig~ll~~iG~ll~ala~~--------~~i~~s~~~l~l~r~l~G~G~~~~  137 (591)
T PTZ00207         77 FLLPYSFIYDYLGPR-----------PIFVLSMTVFCLGTLLFALTFQ--------EVIEGSVVRLSVYNGLMTLGCMLF  137 (591)
T ss_pred             HHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHhc--------ccccCcHHHHHHHHHHHHHHHHHH
Confidence            444567777665544           3367899999999988887521        000136777888899999999999


Q ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhh
Q 015223          340 AVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVS  379 (411)
Q Consensus       340 ~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~  379 (411)
                      .++....+.+..| +.||.++|++....++|..+.+.+..
T Consensus       138 ~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~  176 (591)
T PTZ00207        138 DLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQL  176 (591)
T ss_pred             HHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777778888876 67899999999999999976443333

>TIGR00896 CynX cyanate transporter

Probab=96.69  E-value=0.015  Score=56.86  Aligned_cols=108  Identities=14%  Similarity=0.149  Sum_probs=78.0

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      ++..+++.+...+..|+.+++.+++.+|+           .+.+|.++.+++.+.. ..              .+.++++
T Consensus        38 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~-~~--------------~~~~~l~   91 (355)
T TIGR00896        38 GLLTALPVLCFAVLAPLAPWLARRFGEER-----------SVAAGLLLIAAGILIR-SA--------------PGTALLF   91 (355)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhCchH-----------HHHHHHHHHHHHHHHH-Hh--------------ccHHHHH
Confidence            45567777888888999999887666542           2456776666665544 21              2455667


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ...++.++|.....+.....+.+..| +.|+.++|++.....+|..+++.+...+
T Consensus        92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896        92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77889999999887666666777666 5799999999988888888877665544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.68  E-value=0.049  Score=56.16  Aligned_cols=85  Identities=7%  Similarity=0.052  Sum_probs=68.1

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 015223          288 IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSY  367 (411)
Q Consensus       288 ~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~  367 (411)
                      +..+.++.+++...+++..       +    ..+.+++.+.+++.+++.....+...+++.+..|++.|+.++|+.....
T Consensus        84 ll~~~i~~~~~~~~~a~~~-------~----~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~  152 (491)
T PRK11010         84 LLATQLLLLVAIAAMGFLE-------P----GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGY  152 (491)
T ss_pred             HHHHHHHHHHHHHHHHHcC-------C----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence            4567777777777776642       1    2467788888899999988888888899999999999999999999999


Q ss_pred             hHHHHHHhHhhhhhcc
Q 015223          368 SFGFYLSSLLVSFVNK  383 (411)
Q Consensus       368 ~~G~~lg~~l~~~~~~  383 (411)
                      .+|..+++.+...+..
T Consensus       153 ~lG~llg~~l~~~l~~  168 (491)
T PRK11010        153 RLAMLVSGGLALWLAD  168 (491)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999877665543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.68  E-value=0.003  Score=61.65  Aligned_cols=113  Identities=15%  Similarity=0.139  Sum_probs=92.4

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +.+.+--.+...+.+|+.+++-++++||.           .+.+|.+..+++.++.+.-.              ++..++
T Consensus        71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkp-----------vll~c~~~va~s~ll~~~S~--------------~F~afv  125 (451)
T KOG2615|consen   71 GFLGSSFSILQFISSPLWGCLSDRYGRKP-----------VLLACLIGVALSYLLWALSR--------------NFAAFV  125 (451)
T ss_pred             hhHhhHHHHHHHHhhhhhhhhhhhhCchH-----------HHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence            34455556778888999999998888762           14677777778777777542              455677


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT  385 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s  385 (411)
                      .+-++.|+....+++.- +++.+.++++.|+..|+......++|-.+||.+++.....+
T Consensus       126 ~aR~l~Gi~kgnl~v~r-AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~  183 (451)
T KOG2615|consen  126 LARFLGGIFKGNLSVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFS  183 (451)
T ss_pred             HHHHhhhhccCchHHHH-HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhH
Confidence            77899999999999888 79999999999999999999999999999999999887733

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.58  E-value=0.041  Score=56.41  Aligned_cols=130  Identities=12%  Similarity=0.093  Sum_probs=85.0

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhc---ccCCCccch
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSA---LDSGKTLSI  322 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~s~  322 (411)
                      .+..+.+.++..++.+|+.+++.++...|.+++    ++.  +..|.+..++++++++..+....-..   +.+......
T Consensus        41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~--il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i  114 (477)
T TIGR01301        41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPF--IAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI  114 (477)
T ss_pred             HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHH--HHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence            345677788899999999999998643333221    111  34467777777777766442110000   000001122


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHH--HHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          323 FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQ--AFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       323 ~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~--g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ++.+....+..++--...++..+++.+.+|++.|  +.+.+......++|+.+|..+++..
T Consensus       115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666677777777777999999999866  6789999999999999999888764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.57  E-value=0.007  Score=60.30  Aligned_cols=84  Identities=15%  Similarity=-0.001  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHH
Q 015223           17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAA   96 (411)
Q Consensus        17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~   96 (411)
                      ..+.+.+.+.+++.|...+...+...|.+|+ +      |+++.+++....++|..+|+.++|++.+++||+..|.+..+
T Consensus       306 ~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~  378 (393)
T PRK15011        306 AILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALV  378 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3344455555556565555556666677653 2      57899999899999999999999999999999999998887


Q ss_pred             HHHHHHHHHhh
Q 015223           97 AMALGLFGVVS  107 (411)
Q Consensus        97 ~~~l~~i~~~~  107 (411)
                      ..+++++..+.
T Consensus       379 ~~~~~~~~~~~  389 (393)
T PRK15011        379 MIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHh
Confidence            77776665554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.56  E-value=0.0082  Score=58.75  Aligned_cols=107  Identities=16%  Similarity=0.155  Sum_probs=77.6

Q ss_pred             HHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHH
Q 015223          258 VILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEM  337 (411)
Q Consensus       258 ll~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~  337 (411)
                      .+..|+.+++.+++++|+           -+.++.++.+++.++.+.....-    .. + ....++++...+++|++..
T Consensus        49 ~i~~~~~G~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~~~~----~~-~-~~~~~~~~~~r~l~G~~~~  111 (394)
T TIGR00883        49 PLGAIVFGHFGDRIGRKK-----------TLVITLLMMGIGTLLIGLLPSYA----TI-G-IWAPILLLLARLIQGFSLG  111 (394)
T ss_pred             hhHHHHhhhhhhhhhhHH-----------HHHHHHHHHHHHHHHHhhCCChh----hh-H-HHHHHHHHHHHHHHHhhcc
Confidence            355677788777666542           25678888888877776643100    00 0 0112346677799999999


Q ss_pred             HHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          338 FTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       338 l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ...+....++.+..|++.|+.+++++.....+|..+++.+...+
T Consensus       112 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~  155 (394)
T TIGR00883       112 GEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLL  155 (394)
T ss_pred             ccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887888999999999999999999999999999988776554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15075 citrate-proton symporter; Provisional

Probab=96.52  E-value=0.024  Score=57.24  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=71.4

Q ss_pred             HHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHh
Q 015223          261 VPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTA  340 (411)
Q Consensus       261 ~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~  340 (411)
                      +++.+.+.++++||+           -+..+.++.+++.+..++.+....    - + .....+++..-+++|+++....
T Consensus        73 ~~~~G~l~Dr~Grr~-----------~l~~~~~~~~~~~~l~~~~~~~~~----~-~-~~~~~~l~~~R~l~G~~~g~~~  135 (434)
T PRK15075         73 AIVLGAYIDRVGRRK-----------GLIVTLSIMASGTLLIAFVPGYAT----I-G-LAAPLLVLLGRLLQGFSAGVEL  135 (434)
T ss_pred             HHHHHHHhhhhchHH-----------HHHHHHHHHHHHHHHHHhCCcHHH----H-H-HHHHHHHHHHHHHhhccccccH
Confidence            455666666665542           357788888888777776531000    0 0 0001235666789999999888


Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          341 VGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       341 ~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      +....++.+..|++.|+.++++......+|..+++.++..+
T Consensus       136 ~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l  176 (434)
T PRK15075        136 GGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL  176 (434)
T ss_pred             HHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77778999999999999999998888777777776666654

>PRK09952 shikimate transporter; Provisional

Probab=96.50  E-value=0.013  Score=59.26  Aligned_cols=104  Identities=17%  Similarity=0.163  Sum_probs=73.0

Q ss_pred             HHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHh
Q 015223          261 VPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTA  340 (411)
Q Consensus       261 ~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~  340 (411)
                      .++.+++.++++||           +-+.+++++.+++.++.++....-.    . + ..+++.++...+++|+++....
T Consensus        81 ~~~~G~l~Dr~Grr-----------~~l~~~~~~~~~~~~~~~~~~~~~~----~-~-~~~~~~l~~~R~l~G~~~g~~~  143 (438)
T PRK09952         81 GVVFGHFGDRLGRK-----------RMLMLTVWMMGIATALIGLLPSFST----I-G-WWAPVLLVTLRAIQGFAVGGEW  143 (438)
T ss_pred             HHHHHHHHHhhccH-----------HHHHHHHHHHHHHHHHHhcCCcHHH----H-H-HHHHHHHHHHHHHHHhhhcccH
Confidence            34455555555444           3356788888888777776531000    0 0 0112246677899999999999


Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          341 VGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       341 ~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      +....++.+..|++.||.+++.......+|..++..+...+
T Consensus       144 ~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l  184 (438)
T PRK09952        144 GGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI  184 (438)
T ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999988887665544

>TIGR00901 2A0125 AmpG-related permease

Probab=96.44  E-value=0.024  Score=55.34  Aligned_cols=106  Identities=8%  Similarity=0.070  Sum_probs=74.8

Q ss_pred             HHhhhHhHHhhhhhccCCCCCCCchhH-HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHH
Q 015223          261 VPLYDKFFVPFARKYTGHESGISPLQR-IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFT  339 (411)
Q Consensus       261 ~p~~~~l~~~~~~~~~~~~~~~s~~~k-~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~  339 (411)
                      .|+.+.+.++...|+      ....+. +..+.++.++++..+++..        .   ..+.+++...+++.+++-...
T Consensus        38 ~~~~g~~~Dr~~~~~------~Grr~~~l~~~~~~~~~~~~~l~~~~--------~---~~~l~~l~~~~~~~~~~~~~~  100 (356)
T TIGR00901        38 KFLWSPLVDTVYLPF------FGRRRSWLVLTQVLLLSLLLILSFLV--------P---STDLPLLAGLAFLIAFFSATQ  100 (356)
T ss_pred             HHHHHHHHhcccCCC------CCccHHHHHHHHHHHHHHHHHHHcCC--------c---chhHHHHHHHHHHHHHHHHHH
Confidence            666666665542211      111222 3456666666666665442        0   235666777778888888888


Q ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          340 AVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       340 ~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      .++..+++.+..|++.|+.+.|.......+|..+++.++..+..
T Consensus       101 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~  144 (356)
T TIGR00901       101 DIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS  144 (356)
T ss_pred             HHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            88888999999999999999999999999999999988876643

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.38  E-value=0.032  Score=57.72  Aligned_cols=101  Identities=13%  Similarity=0.021  Sum_probs=71.0

Q ss_pred             HHHHHhhhHhHHhh-hhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHH
Q 015223          258 VILVPLYDKFFVPF-ARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSE  336 (411)
Q Consensus       258 ll~~p~~~~l~~~~-~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige  336 (411)
                      ....++.+++.++. ++|           +-+..|.++.+++.+++++..             .+.+++....+++++|.
T Consensus        71 ~~~~~~~G~LaDr~~G~r-----------~~~~~g~~~~~ig~~l~~~~~-------------~~~~~l~~~~~l~gig~  126 (500)
T PRK09584         71 YGLVAIGGWLGDKVLGTK-----------RVIMLGAIVLAIGYALVAWSG-------------HDAGIVYMGMATIAVGN  126 (500)
T ss_pred             HHHHHHHHHHHHhccchH-----------HHHHHHHHHHHHHHHHHHHhc-------------ccHHHHHHHHHHHHHhh
Confidence            33345667776663 443           235678888888877666531             13344556778899999


Q ss_pred             HHHhhHHHHHHHHHhhhhH--HHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          337 MFTAVGLIEFFYKQSLKGM--QAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       337 ~l~~~~~~~~~~~~aP~~~--~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      .+..+...+++.+..|++.  ++.+.++++...++|..+|+.+.+.+.
T Consensus       127 g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584        127 GLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             hcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            9888777788999887643  445788889999999999988887663

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.38  E-value=0.00072  Score=70.38  Aligned_cols=93  Identities=15%  Similarity=0.107  Sum_probs=2.9

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc----------
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH----------   84 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~----------   84 (411)
                      ...+|++|.++.++|..-+.+.-.+++=|..++++      -..+++++|....+|+++|.++++.+.+.          
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~  213 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD  213 (539)
T ss_dssp             ------------SSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence            46888899999999999999999998888877655      47789999999999999999999876321          


Q ss_pred             -----------c-cchhHHHHHHHHHHHHHHHHhhccccee
Q 015223           85 -----------S-GMDVGFGVSAAAMALGLFGVVSGTLYYR  113 (411)
Q Consensus        85 -----------~-g~~~~F~i~~~~~~l~~i~~~~~~~~~~  113 (411)
                                 . .|+.+|.+.+...++..+-++..-|+++
T Consensus       214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp  254 (539)
T PF03137_consen  214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP  254 (539)
T ss_dssp             -----------------------------------------
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence                       2 3999999999887777776666655554

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.27  E-value=0.026  Score=57.49  Aligned_cols=57  Identities=14%  Similarity=0.165  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223          329 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT  385 (411)
Q Consensus       329 ~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s  385 (411)
                      -++.|++-.+++.+..+..+|..-|+.++.++|+.......+..+|+.+........
T Consensus       395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~  451 (488)
T KOG2325|consen  395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS  451 (488)
T ss_pred             hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc
Confidence            467788888888888899999999999999999999999999999999988876654

>PRK09528 lacY galactoside permease; Reviewed

Probab=96.17  E-value=0.0075  Score=60.57  Aligned_cols=86  Identities=13%  Similarity=-0.008  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA-AYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~-~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      +.+.++....+.+++.+...+.....+.+.++++.      +...++. +.+..++|..+++.++|++.+.+||+..|.+
T Consensus       314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~  387 (420)
T PRK09528        314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI  387 (420)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence            34556667777888888777777788888887533      4555554 5677899999999999999999999999998


Q ss_pred             HHHHHHHHHHHHh
Q 015223           94 SAAAMALGLFGVV  106 (411)
Q Consensus        94 ~~~~~~l~~i~~~  106 (411)
                      .++..++..++.+
T Consensus       388 ~~~~~~i~~~~~~  400 (420)
T PRK09528        388 LGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766555544433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.03  E-value=0.094  Score=51.83  Aligned_cols=87  Identities=15%  Similarity=0.020  Sum_probs=70.8

Q ss_pred             chhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHH
Q 015223          284 PLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMT  363 (411)
Q Consensus       284 ~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~  363 (411)
                      ..+-+.+|+.+.++|+.+..=...           ..++..+....++++.|-.+...+.+.++....|++....=+.+.
T Consensus        77 yk~gi~lgL~l~avg~~lF~pAa~-----------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~  145 (422)
T COG0738          77 YKAGIVLGLLLYAVGAALFWPAAS-----------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLA  145 (422)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhh-----------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHH
Confidence            334478999999999888764331           235666778889999999999999999999999998888888888


Q ss_pred             HHHHhHHHHHHhHhhhhh
Q 015223          364 YCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       364 ~l~~~~G~~lg~~l~~~~  381 (411)
                      ....++|..+|+.+++..
T Consensus       146 q~fn~lGa~~gp~~g~~l  163 (422)
T COG0738         146 QAFNGLGAILGPLLGSSL  163 (422)
T ss_pred             HHhhhhHHHHHHHHHHHH
Confidence            888899999999888754

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=95.94  E-value=0.17  Score=53.10  Aligned_cols=121  Identities=11%  Similarity=0.147  Sum_probs=90.5

Q ss_pred             cccCCCCeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcc
Q 015223          235 NNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSAL  314 (411)
Q Consensus       235 ~~~~g~g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~  314 (411)
                      +.++| +. -...|+...+.+...+..|+++++.+-++||.           -+..|.++..+|.++.+-.         
T Consensus        71 ~~diG-~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA---------  128 (599)
T PF06609_consen   71 NADIG-GS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATA---------  128 (599)
T ss_pred             HHhcC-CC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcC---------
Confidence            34555 32 33567788888888899999999999888764           2577888999999888854         


Q ss_pred             cCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          315 DSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       315 ~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                           .++.-++...++.++|-....... ..+.+..|.+.|+.+.++......+....|+.+.+.+..
T Consensus       129 -----~~~~~~iag~~l~GvgaG~~~~~~-~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~  191 (599)
T PF06609_consen  129 -----QNMNTFIAGMVLYGVGAGVQELAA-LAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA  191 (599)
T ss_pred             -----CcHHHHHHHHHHHHHhhHHHHHHH-HHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence                 256668888999999987777554 568999999999988877776655555566666665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=95.91  E-value=0.075  Score=54.73  Aligned_cols=107  Identities=7%  Similarity=-0.010  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHhhhHhHHhh-hhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223          252 IPYIMLVILVPLYDKFFVPF-ARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL  330 (411)
Q Consensus       252 in~l~ill~~p~~~~l~~~~-~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~  330 (411)
                      .......+..++.+++.+++ ++|+           -+.+|.++.+++.++++..+             .+..++.....
T Consensus        53 ~~~~~~~l~~ligG~LaDRilGrrr-----------~iliG~il~~lg~lll~~~~-------------~~~~~~~l~l~  108 (493)
T PRK15462         53 AYCSLVYVTPILGGFLADKVLGNRM-----------AVMLGALLMAIGHVVLGASE-------------IHPSFLYLSLA  108 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCcHH-----------HHHHHHHHHHHHHHHHHHhh-------------cchhHHHHHHH
Confidence            33344555666778887776 4432           25788888888876555321             11222333445


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhhh--HHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          331 IFGLSEMFTAVGLIEFFYKQSLKG--MQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       331 l~~ige~l~~~~~~~~~~~~aP~~--~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      +..+|..+..+..++++.+.-|++  .|+...++.+...++|..+++.+.+.+.
T Consensus       109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~  162 (493)
T PRK15462        109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ  162 (493)
T ss_pred             HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence            566777766666667889998875  7888999999999999999988887764

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.82  E-value=0.049  Score=55.71  Aligned_cols=88  Identities=7%  Similarity=0.077  Sum_probs=74.4

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH
Q 015223          285 LQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY  364 (411)
Q Consensus       285 ~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~  364 (411)
                      .+.+..+.++.+++-++.....            ..+.+.++..-+++|++|....|....+..+-+|+++|++..++.+
T Consensus       103 r~v~~~~~~~sa~~t~l~P~aa------------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~  170 (466)
T KOG2532|consen  103 RRVFFISGLISALLTLLTPLAA------------SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILT  170 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH------------HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHH
Confidence            3456788888888877777664            3456677888899999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHhHhhhhhccc
Q 015223          365 CSYSFGFYLSSLLVSFVNKV  384 (411)
Q Consensus       365 l~~~~G~~lg~~l~~~~~~~  384 (411)
                      ....+|..++-.+++.+...
T Consensus       171 ~g~q~g~v~~mp~sg~lc~s  190 (466)
T KOG2532|consen  171 AGSQLGTIITMPVSGLLCES  190 (466)
T ss_pred             HHHHHHHHHHHHhHHHHhcc
Confidence            99999999998888877654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=95.76  E-value=0.028  Score=55.76  Aligned_cols=85  Identities=14%  Similarity=0.009  Sum_probs=65.9

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY-FAFSTGELVALTVLVWVQTHSGMDVGFG   92 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y-~~iNlG~~ig~~l~g~l~~~~g~~~~F~   92 (411)
                      .+.+.++....+.+++.|...+.....+.+. ++++      |..+.+++. ....+|..+|+.++|++.|++|+ ..|+
T Consensus       291 ~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~  362 (382)
T TIGR00902       291 EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFV  362 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence            4556777788999999999999999999976 5433      577788875 46789999999999999999996 6676


Q ss_pred             HHHHHHHHHHHHHh
Q 015223           93 VSAAAMALGLFGVV  106 (411)
Q Consensus        93 i~~~~~~l~~i~~~  106 (411)
                      +.++..++++++..
T Consensus       363 ~~~~~~~~~~~~~~  376 (382)
T TIGR00902       363 FMAIIAAAAFFLIP  376 (382)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666555554433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=95.71  E-value=0.04  Score=56.61  Aligned_cols=88  Identities=10%  Similarity=0.103  Sum_probs=74.5

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc-chhHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFG   92 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g-~~~~F~   92 (411)
                      .+.+.+++.=++.++..|...+...++.+++.|+++      ...+|++|.+..-..+.+||++.|.+.+..| .|++|+
T Consensus       378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~  451 (477)
T PF11700_consen  378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL  451 (477)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            345557777778999999999999999999999866      4789999999999999999999999988776 788988


Q ss_pred             HHHHHHHHHHHHHhh
Q 015223           93 VSAAAMALGLFGVVS  107 (411)
Q Consensus        93 i~~~~~~l~~i~~~~  107 (411)
                      ...++.+++++++..
T Consensus       452 ~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  452 FLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            777777777666643

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.64  E-value=0.045  Score=54.96  Aligned_cols=119  Identities=12%  Similarity=0.109  Sum_probs=83.0

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +.+.++..+.-.+..|+.+.+.++..+|.+++      ..-+..|.++.+++++.+....        +.......+|+.
T Consensus        38 g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grr------r~~i~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~  103 (437)
T TIGR00792        38 GTLFLVARILDAITDPIMGNIVDRTRTRWGKF------RPWLLIGAIPFSIVLVLLFTTP--------DFSATGKLVYAY  103 (437)
T ss_pred             HHHHHHHHHHHHhccchheEeeecCCCCCCCc------chhHHHhHHHHHHHHHHHHhCC--------CCCcchHHHHHH
Confidence            34556666778888999999988766554321      1124667777777776665432        100012367888


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHh-hhhHHHHHHHHHHHHHhHHHHHHhHhhh
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLVS  379 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~a-P~~~~g~~~g~~~l~~~~G~~lg~~l~~  379 (411)
                      ..+++.+++..+..++..++..+.. |++.|+...+.......+|..+++.+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~  157 (437)
T TIGR00792       104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVL  157 (437)
T ss_pred             HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999988877767877776 5789999999888888888777665544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=95.42  E-value=0.046  Score=54.23  Aligned_cols=75  Identities=13%  Similarity=0.120  Sum_probs=58.1

Q ss_pred             HHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHHHHHHH
Q 015223           23 LYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGL  102 (411)
Q Consensus        23 l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~l~~  102 (411)
                      ..+.+++.|...+...+...+..++++     .+++.+++.....++|..+||.++|++.++.||+..|.+.++..++++
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGD-----QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            344455566666777777777765422     168899999999999999999999999999999999988776555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=95.25  E-value=0.59  Score=40.34  Aligned_cols=64  Identities=9%  Similarity=0.184  Sum_probs=56.2

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223          321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  384 (411)
Q Consensus       321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~  384 (411)
                      +.+.+++.-++.|+|+.+.+.+.-.++.+...++.+++..|+++.....+..+|..+.-.+...
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~~  151 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQG  151 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4566788889999999999988888999999999999999999988889999998887776544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=95.25  E-value=0.23  Score=49.26  Aligned_cols=112  Identities=11%  Similarity=0.025  Sum_probs=62.4

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHH---HHHHHHHhhhhcccCCCccc-h
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMIS---AALMEKKRRDSALDSGKTLS-I  322 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~s-~  322 (411)
                      +.+.++..+...+..|+.+++.++..||+.           +..+.+..+++...   ....+..          ... .
T Consensus        41 g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~-----------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~   99 (396)
T TIGR00882        41 GIVFSCISLFSILFQPLFGLISDKLGLKKH-----------LLWIISGLLVLFAPFFIYVFGPLL----------QSNIL   99 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-----------HHHHHHHHHHHHHHHHHHHhhhHH----------HHHHH
Confidence            456677778889999999999988876531           22233322222222   1111100          011 2


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          323 FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       323 ~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      +......++.+++.....+...+++.+..++  ++...|......++|..+|+.+++.+
T Consensus       100 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l  156 (396)
T TIGR00882       100 VGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGIL  156 (396)
T ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhh
Confidence            2344556777888877777776666665443  23344555555566666666665544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.11  E-value=0.14  Score=52.53  Aligned_cols=111  Identities=13%  Similarity=0.146  Sum_probs=80.2

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      -+.....+-..-+++-++..|++.+++           ...-+.+|+.+.++=++.+.+++              ++|..
T Consensus       408 fGv~~a~~~~gEI~~~ffs~klI~kiG-----------Hv~v~~lgLa~~~~Rf~~~S~L~--------------n~W~v  462 (618)
T KOG3762|consen  408 FGVVSALCHAGEILFYFFSFKLIEKIG-----------HVNVMYLGLACNVGRFLYYSYLQ--------------NPWMV  462 (618)
T ss_pred             eeehhhhhccchHHHHHHHHHHHHHhc-----------ccceeeehhhHHHHHHHHHHHhc--------------Cchhe
Confidence            344455555666677777777774443           23335677777777777777663              67777


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHH-HhHHHHHHhHhhhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCS-YSFGFYLSSLLVSFV  381 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~-~~~G~~lg~~l~~~~  381 (411)
                      +|--+++++--.+++.+..+++...+||+++..++|+.... .++|--+|+.|++.+
T Consensus       463 LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~  519 (618)
T KOG3762|consen  463 LPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFV  519 (618)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhh
Confidence            78889999999999988889999999999999999987643 466666666665554

>PRK09669 putative symporter YagG; Provisional

Probab=95.04  E-value=0.072  Score=53.97  Aligned_cols=75  Identities=15%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChh-hhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccch
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK-QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMD   88 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~-~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~   88 (411)
                      .+.+.+++...+.++|.+...|...++++|..|.++.+ .++..+..++.+.+..++|..+|+.++|++-+..||.
T Consensus       317 ~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        317 SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            34566777888899999999999999999998743321 1222466889999999999999999999988777773

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=94.97  E-value=0.067  Score=53.68  Aligned_cols=84  Identities=14%  Similarity=0.000  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHH-HHHHHHHHhhHHhhhhccccch------hHH
Q 015223           19 FFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA-FSTGELVALTVLVWVQTHSGMD------VGF   91 (411)
Q Consensus        19 ~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~-iNlG~~ig~~l~g~l~~~~g~~------~~F   91 (411)
                      ..++..+.++..|.+.+....++.+..|++.      |.++.+++... ..+|..+|.+++|++.|++|-+      ..|
T Consensus       304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~  377 (400)
T PF03825_consen  304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVF  377 (400)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            3445567899999999999999999998765      68889988775 4599999999999999887644      456


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 015223           92 GVSAAAMALGLFGVVSG  108 (411)
Q Consensus        92 ~i~~~~~~l~~i~~~~~  108 (411)
                      .+++...++..+.+...
T Consensus       378 ~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  378 LVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            66665555555555543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.74  E-value=0.42  Score=48.96  Aligned_cols=100  Identities=18%  Similarity=0.122  Sum_probs=69.3

Q ss_pred             HHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHH
Q 015223          258 VILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEM  337 (411)
Q Consensus       258 ll~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~  337 (411)
                      ++.+.+.+.+-++++||.           -+.+..++..++.++......           .-+...++.+-++.|+...
T Consensus        74 ~~Gs~~~~~la~~~GRK~-----------~l~~~~~l~~~~~~~~~~s~~-----------~~~~e~li~GR~i~Gl~~g  131 (485)
T KOG0569|consen   74 MIGSFSSGLLADRFGRKN-----------ALLLSNLLAVLAALLMGLSKS-----------APSFEMLILGRLIVGLACG  131 (485)
T ss_pred             HHHHHHHHHHHHhhcchH-----------HHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHhH
Confidence            344444455555555542           134555555555555544321           1356678899999999999


Q ss_pred             HHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhh
Q 015223          338 FTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVS  379 (411)
Q Consensus       338 l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~  379 (411)
                      +......-++.+.+|++.||.+..+..+...+|..+|..++.
T Consensus       132 l~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l  173 (485)
T KOG0569|consen  132 LSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL  173 (485)
T ss_pred             HHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence            998666679999999999999999988888888888865554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=94.22  E-value=3.6  Score=40.71  Aligned_cols=90  Identities=17%  Similarity=0.050  Sum_probs=58.3

Q ss_pred             cccccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccc
Q 015223            8 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGM   87 (411)
Q Consensus         8 ~~~~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~   87 (411)
                      +.+.-+.+...+.+.+.+.++|.|+ .|...++-++..+...      |....-.+ .-..+|.++.-.+.=.+..++||
T Consensus       158 ~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gw  229 (528)
T KOG0253|consen  158 VISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGW  229 (528)
T ss_pred             HhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhH
Confidence            3344455667778889999999999 9999998888877533      22222222 33445666666666556667899


Q ss_pred             hh-HHHHHHHHHHHHHHHH
Q 015223           88 DV-GFGVSAAAMALGLFGV  105 (411)
Q Consensus        88 ~~-~F~i~~~~~~l~~i~~  105 (411)
                      || .|.+...+++++...+
T Consensus       230 r~~l~~~~~pl~~~a~f~~  248 (528)
T KOG0253|consen  230 RYLLFTSSTPLMFAARFLV  248 (528)
T ss_pred             HHHHHHHHhHHHHHHHHHh
Confidence            97 4555556655554443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.09  E-value=0.21  Score=51.04  Aligned_cols=117  Identities=9%  Similarity=0.015  Sum_probs=77.2

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCcc-chHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTL-SIFSI  325 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-s~~~l  325 (411)
                      ++.....++...+..|+++.+-.|..          +..+-+.+|.+++.+|.++...++..          +. ..+++
T Consensus        74 G~viaa~slg~~i~~liF~~Ws~k~~----------~~k~Pli~s~ii~~~g~llY~~l~~~----------~~~~~y~m  133 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWSNKTG----------SVKKPLIVSFLIAIIGNLLYLALAYV----------PNGVKYLM  133 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccccccC----------CcccCHHHHHHHHHHHHHHHHHHHhc----------ccchHHHH
Confidence            45566678889999999998643221          22333689999999999999777631          23 67889


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  384 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~  384 (411)
                      ..++++.|+|-.-...-= .+++..+-.+.|.++++.....+.+|..+|+.+...+...
T Consensus       134 L~~R~l~Gvg~~n~a~lR-~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L  191 (488)
T KOG2325|consen  134 LVARILTGVGVGNFAVLR-AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL  191 (488)
T ss_pred             HHHHHHcCcCcccHHHHH-HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence            999999999966555333 3555544444444555555555566666666666555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=93.65  E-value=0.23  Score=51.47  Aligned_cols=110  Identities=15%  Similarity=0.204  Sum_probs=84.7

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+|+.++......+..|+...+.++++.|           .-+.+|.+++++|++...+.+              ++|.+
T Consensus        83 ~~~i~sl~~~~~~~~gpl~s~l~~rfg~R-----------~v~i~G~~v~~~g~~lssF~~--------------~i~~l  137 (509)
T KOG2504|consen   83 IAWIGSLLLGVYLLAGPLVSALCNRFGCR-----------TVMIAGGLVAALGLLLSSFAT--------------SLWQL  137 (509)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHhhcCch-----------HHHHHHHHHHHHHHHHHHHHh--------------hHHHH
Confidence            67778888877888899988877544433           335889999999999999874              56666


Q ss_pred             HHHH-HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          326 TPQF-LIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       326 i~~~-~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      ...| ++-|+|-.++..+... +...=.++.|++++|+-....++|..+=+.+....
T Consensus       138 ~lt~gvi~G~G~~~~~~paiv-iv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l  193 (509)
T KOG2504|consen  138 YLTFGVIGGLGLGLIYLPAVV-ILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYL  193 (509)
T ss_pred             HHHHHHHhhccchhhhcchhh-hhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHH
Confidence            5555 8899999999966644 45577888899999999999998877766665543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=93.61  E-value=0.19  Score=49.72  Aligned_cols=80  Identities=11%  Similarity=-0.036  Sum_probs=57.3

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY-FAFSTGELVALTVLVWVQTHSGMDVGFG   92 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y-~~iNlG~~ig~~l~g~l~~~~g~~~~F~   92 (411)
                      .+.+.+++...+.+++.+...+.......++ ++++      +.++++.+. ...++|..+||.++|++.|++|+. .|+
T Consensus       291 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~  362 (382)
T PRK11128        291 TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFW  362 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHH
Confidence            3566677788888999998888888777765 3222      466777765 556788899999999999999874 555


Q ss_pred             HHHHHHHHH
Q 015223           93 VSAAAMALG  101 (411)
Q Consensus        93 i~~~~~~l~  101 (411)
                      +.+...+.+
T Consensus       363 ~~~~~~~~~  371 (382)
T PRK11128        363 VMALVALPA  371 (382)
T ss_pred             HHHHHHHHH
Confidence            555443433

>PRK11462 putative transporter; Provisional

Probab=93.56  E-value=0.44  Score=48.69  Aligned_cols=109  Identities=11%  Similarity=-0.006  Sum_probs=77.0

Q ss_pred             HHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHH
Q 015223          258 VILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEM  337 (411)
Q Consensus       258 ll~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~  337 (411)
                      .+.-|+++.+.++...|.+|     +.+. +..|.+..++++.++....        +.+......|....|++..++--
T Consensus        59 ai~Dp~~G~~~D~t~~r~Gr-----~rp~-il~g~i~~~i~~~llf~~p--------~~s~~~~~~y~~~~~~~~~~~~t  124 (460)
T PRK11462         59 AISDPCMGLLADRTRSRWGK-----FRPW-VLFGALPFGIVCVLAYSTP--------DLSMNGKMIYAAITYTLLTLLYT  124 (460)
T ss_pred             HHHhhhheehhccCCCCCCC-----cchh-HhHHHHHHHHHHHHHHhCC--------CCCcchHHHHHHHHHHHHHHHHH
Confidence            35577777777765544432     1222 4567777777776655431        10001236788999999999999


Q ss_pred             HHhhHHHHHHHHHhh-hhHHHHHHHHHHHHHhHHHHHHhHhhhh
Q 015223          338 FTAVGLIEFFYKQSL-KGMQAFLTAMTYCSYSFGFYLSSLLVSF  380 (411)
Q Consensus       338 l~~~~~~~~~~~~aP-~~~~g~~~g~~~l~~~~G~~lg~~l~~~  380 (411)
                      +..++-.++....++ ++.|+..++.......+|..+++.+...
T Consensus       125 ~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~p  168 (460)
T PRK11462        125 VVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMP  168 (460)
T ss_pred             HHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888899999988 8999999999888888888777766543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=93.15  E-value=0.77  Score=46.38  Aligned_cols=89  Identities=18%  Similarity=0.166  Sum_probs=60.3

Q ss_pred             cccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhh----HHHHHHHHHHHHHHHHhhHHhhhhcc-
Q 015223           10 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS----YFNAAYFAFSTGELVALTVLVWVQTH-   84 (411)
Q Consensus        10 ~~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~----~f~~~y~~iNlG~~ig~~l~g~l~~~-   84 (411)
                      +++..-...+...|.++++|.|+=.|.+.+...+.-.+..      |+.    .|....+++-.|+.++.++..-+... 
T Consensus       138 ~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~  211 (538)
T KOG0252|consen  138 TSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIF  211 (538)
T ss_pred             CCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccC
Confidence            3444556778889999999999999999888776544322      444    56666777777777777766654321 


Q ss_pred             ----------ccchhHHHHHHHHHHHHHHHHhh
Q 015223           85 ----------SGMDVGFGVSAAAMALGLFGVVS  107 (411)
Q Consensus        85 ----------~g~~~~F~i~~~~~~l~~i~~~~  107 (411)
                                .=||..|.+.++   .++++++.
T Consensus       212 ~~~~~~~~ld~vWRl~~glg~v---pa~~~ly~  241 (538)
T KOG0252|consen  212 NGPSTYPHLDGVWRIIFGLGAV---PALLVLYF  241 (538)
T ss_pred             CCCCCchHHHHHHHHHHHHHHH---HHHHHHHh
Confidence                      348999987653   34444444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=93.11  E-value=0.86  Score=45.36  Aligned_cols=114  Identities=13%  Similarity=0.096  Sum_probs=73.8

Q ss_pred             CeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCcc
Q 015223          241 NFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTL  320 (411)
Q Consensus       241 g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  320 (411)
                      ++.+++++...+..+.++..+.+ --.+-.+..|.       .+.+-..+++++..+-++..++...           ..
T Consensus        43 ~~~LS~~q~~ll~aiPil~Gall-Rl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~-----------~~  103 (417)
T COG2223          43 DFGLSEGQKGLLVAIPILVGALL-RLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVT-----------YP  103 (417)
T ss_pred             ccCCCHHHHHHHHHHHHHHhHHH-HHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHcc-----------CC
Confidence            34577777666666655554432 11112222332       3334457788888888888887742           23


Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHh
Q 015223          321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS  375 (411)
Q Consensus       321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~  375 (411)
                      +.|+++..-++.|++-.-..+++ ..+.+.-||+.+|.++|++- ..++|-.+..
T Consensus       104 ~~~~ll~~gll~G~~GasFav~m-~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q  156 (417)
T COG2223         104 STWQLLVIGLLLGLAGASFAVGM-PNASFFFPKEKQGLALGIAG-AGNLGVAVAQ  156 (417)
T ss_pred             chHHHHHHHHHHhcccceehccc-ccccccCChhhhhHHHHHhc-cccccHHHHH
Confidence            44555555678888887777777 68999999999999999987 5555544443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.85  E-value=12  Score=38.10  Aligned_cols=119  Identities=11%  Similarity=0.016  Sum_probs=64.3

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhc--ccCCC----ccc
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSA--LDSGK----TLS  321 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~--~~~~~----~~s  321 (411)
                      .+..++.+.+-+..-+.+-.+..+.||.++    +....-+.+|.++..+++++..+-..  .|.+  +.++.    ..+
T Consensus       279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~----fg~~~~~~~~~~~~~~~~~li~l~~p--~dap~~~t~~~~~~~~~~  352 (461)
T KOG3098|consen  279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRG----FGRKPTVLIGIIIHLIGFLLIHLSFP--NDAPLRPTDSPPLLFTPS  352 (461)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhhhhhh----cccCcchhHHHHHHHHHHHHHhcccc--ccCCCCCCcccccccccc
Confidence            344555555555555555555555554321    22222246676666666555544321  1111  11110    112


Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHH
Q 015223          322 IFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYL  373 (411)
Q Consensus       322 ~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~l  373 (411)
                      ......-++++|+++.+.....+..+.... ++.+..+..+.-+.+++++.+
T Consensus       353 ~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v  403 (461)
T KOG3098|consen  353 YYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCV  403 (461)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHH
Confidence            333445569999999999988888888888 444555555555555555544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=92.72  E-value=2.7  Score=41.89  Aligned_cols=93  Identities=14%  Similarity=0.170  Sum_probs=68.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHH---HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH
Q 015223          288 IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFS---ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY  364 (411)
Q Consensus       288 ~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~---li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~  364 (411)
                      +-.|+++...+..++........+...+++ ..++.|   ....+.+.|+|-.....+..+...+.+||+.|+...++.+
T Consensus        53 I~~G~~~~~~g~~~ap~a~~~l~~~~~~~~-~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw  131 (403)
T PF03209_consen   53 IWGGTLLQAGGLAIAPFALLLLAESGQQSS-GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVW  131 (403)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcccccccc-cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHH
Confidence            567888877777776665533221111111 123333   4577889999999999888899999999999999999999


Q ss_pred             HHHhHHHHHHhHhhhhh
Q 015223          365 CSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       365 l~~~~G~~lg~~l~~~~  381 (411)
                      .+.-+|..++..+.+.+
T Consensus       132 ~Mli~G~iv~ai~~g~l  148 (403)
T PF03209_consen  132 VMLIVGIIVSAIVFGRL  148 (403)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998887754

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=92.47  E-value=0.63  Score=47.64  Aligned_cols=117  Identities=10%  Similarity=0.074  Sum_probs=78.4

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      .+..+..+.-.+.-|+++.+.++...|.+++    +| . +..|.+..++++.++....        +.+......|+..
T Consensus        46 ~i~~i~ri~dai~dp~~G~lsD~t~sr~Grr----rp-~-il~g~i~~~i~~~llf~~p--------~~~~~~~~~~~~~  111 (473)
T PRK10429         46 TLFLVARIWDAINDPIMGWIVNNTRSRWGKF----KP-W-ILIGTLANSVVLFLLFSAH--------LFEGTAQYVFVCV  111 (473)
T ss_pred             HHHHHHHHHHHHhhchheeehhcCCCCCCCc----ch-h-HhhhhHHHHHHHHHHHcCC--------CCCccHHHHHHHH
Confidence            3455555667778888888888654444321    11 2 4667777777766654321        1000124678888


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHh-hhhHHHHHHHHHHHHHhHHHHHHhHhh
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLV  378 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~a-P~~~~g~~~g~~~l~~~~G~~lg~~l~  378 (411)
                      .|++..++--+..++..++..+.+ +++.|....+.-.....+|+.+.+.+.
T Consensus       112 ~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~  163 (473)
T PRK10429        112 TYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFT  163 (473)
T ss_pred             HHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988889999998 699999988875666666666555443

>PRK09848 glucuronide transporter; Provisional

Probab=91.69  E-value=0.56  Score=47.48  Aligned_cols=73  Identities=18%  Similarity=0.224  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChh-hhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccc
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK-QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGM   87 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~-~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~   87 (411)
                      +.+.+++++.+.++|.+...+...++..|..|+++.| .++.++.+++.+.+..++|..+|+.+.+++-+..||
T Consensus       318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3556677788899999999999999999998764321 112257788999999999999999999987666665

>PTZ00207 hypothetical protein; Provisional

Probab=91.63  E-value=0.52  Score=49.68  Aligned_cols=77  Identities=9%  Similarity=-0.032  Sum_probs=60.6

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH-HhhHHhhhhccccchhHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELV-ALTVLVWVQTHSGMDVGFG   92 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~i-g~~l~g~l~~~~g~~~~F~   92 (411)
                      .+.+.+++++.+.++|.+.+.+.....+.+.|++ +      |+.+.++.....++|+.+ +++..+++.+  +|+..|+
T Consensus       118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl  188 (591)
T PTZ00207        118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-N------RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF  188 (591)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-h------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence            4678889999999999999999889999999962 2      799999999999999975 6666666654  5666666


Q ss_pred             HHHHHHH
Q 015223           93 VSAAAMA   99 (411)
Q Consensus        93 i~~~~~~   99 (411)
                      +.++..+
T Consensus       189 ~l~vl~~  195 (591)
T PTZ00207        189 FLMSFAL  195 (591)
T ss_pred             HHHHHHH
Confidence            6554433

>TIGR01272 gluP glucose/galactose transporter

Probab=91.21  E-value=0.68  Score=44.63  Aligned_cols=62  Identities=10%  Similarity=-0.017  Sum_probs=58.1

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      +..+++..+++.+.|-.+..+..+.++....|++.++..+++.....++|..+||.+++.+-
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999664

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.16  E-value=0.38  Score=45.66  Aligned_cols=80  Identities=11%  Similarity=0.115  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc---chhHHHHHHH
Q 015223           20 FLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG---MDVGFGVSAA   96 (411)
Q Consensus        20 ~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g---~~~~F~i~~~   96 (411)
                      |++..+.++...+.....-++++-..|+++      .+.+|+..|..-|+|-.+.|+++|.+.++-|   |--+|.+...
T Consensus       356 y~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~  429 (459)
T KOG4686|consen  356 YTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG  429 (459)
T ss_pred             HHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence            577888888888877778888888888655      8999999999999999999999999988755   4445655555


Q ss_pred             HHHHHHHHH
Q 015223           97 AMALGLFGV  105 (411)
Q Consensus        97 ~~~l~~i~~  105 (411)
                      .+.+..+..
T Consensus       430 ~~aL~svgi  438 (459)
T KOG4686|consen  430 LMALTSVGI  438 (459)
T ss_pred             HHHHHHHHH
Confidence            554444433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=90.39  E-value=2.7  Score=41.31  Aligned_cols=113  Identities=15%  Similarity=0.199  Sum_probs=81.1

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+.+.+++-+..-+++|+..++-    ||.       .+-+-+..++++.++|.++=..               -+.+.+
T Consensus        49 aGlLTtLPll~fg~~ap~a~~La----r~~-------g~er~l~~~Llli~~G~~iR~~---------------~~~~~L  102 (395)
T COG2807          49 AGLLTTLPLLAFGLFAPAAPRLA----RRF-------GEERSLFLALLLIAAGILIRSL---------------GGLPLL  102 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHH----HHH-------hhHHHHHHHHHHHHHHHHHHhc---------------ccHHHH
Confidence            34455666666667777766654    332       2334355666655555433221               246668


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT  385 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s  385 (411)
                      +...++.+.|....++-+.+++-+.-|++. +.+||+|..+.++|..+++.+.--+....
T Consensus       103 ~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~  161 (395)
T COG2807         103 FLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHS  161 (395)
T ss_pred             HHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence            888899999999999888888999998876 59999999999999999999888776654

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=90.37  E-value=1.7  Score=43.91  Aligned_cols=161  Identities=16%  Similarity=0.058  Sum_probs=102.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCc---cccchhHHHHHHHHHhhhHhHHhhhhhccCC
Q 015223          202 VLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPA---SLQSIPYIMLVILVPLYDKFFVPFARKYTGH  278 (411)
Q Consensus       202 ~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~---~l~~in~l~ill~~p~~~~l~~~~~~~~~~~  278 (411)
                      +++.+..+....-+.|....+..|-|+++       +|    +|-.   ..+.+-|+.-++.+|+.+...++...|.+++
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~-------lG----vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR  101 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQS-------LG----VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR  101 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHH-------cC----CCcccccccccccccccceecccccccccccccccccc
Confidence            33333334444456677666655555443       22    3433   3467778888999999999998887776542


Q ss_pred             CCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCC---CccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhH
Q 015223          279 ESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSG---KTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM  355 (411)
Q Consensus       279 ~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~---~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~  355 (411)
                          +|.  +.++.++.+++++++....-+-.-...+..   .+.++...++.+.|+-++--...-+.=++..+.+-+..
T Consensus       102 ----RPf--I~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~  175 (498)
T KOG0637|consen  102 ----RPF--ILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA  175 (498)
T ss_pred             ----cch--HHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh
Confidence                222  477888888888877765422111111101   12455567778888888886676334378888755554


Q ss_pred             HHH-HHHHHHHHHhHHHHHHhHhhh
Q 015223          356 QAF-LTAMTYCSYSFGFYLSSLLVS  379 (411)
Q Consensus       356 ~g~-~~g~~~l~~~~G~~lg~~l~~  379 (411)
                      |-. +++...+..++||.+|=.++.
T Consensus       176 ~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  176 KKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hhhccchhHHHHHHhcceeeeeccc
Confidence            445 999999999999999977765

>TIGR00788 fbt folate/biopterin transporter

Probab=89.85  E-value=0.97  Score=46.31  Aligned_cols=79  Identities=11%  Similarity=-0.076  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc-----chhHHH
Q 015223           18 IFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-----MDVGFG   92 (411)
Q Consensus        18 ~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g-----~~~~F~   92 (411)
                      ......++.+++.|........++.+.-+++.      +++.|+++....|+|..+++.+++++.++.|     ++..|.
T Consensus       353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~  426 (468)
T TIGR00788       353 FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWL  426 (468)
T ss_pred             eeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHH
Confidence            33444556677777777777888888888755      5889999999999999999999999999888     776666


Q ss_pred             HHHHHHHHHH
Q 015223           93 VSAAAMALGL  102 (411)
Q Consensus        93 i~~~~~~l~~  102 (411)
                      ...+.....+
T Consensus       427 ~i~i~~~~~l  436 (468)
T TIGR00788       427 LILGHSLAPL  436 (468)
T ss_pred             HHHHHHHHHH
Confidence            5544444333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=89.72  E-value=2.8  Score=42.26  Aligned_cols=63  Identities=8%  Similarity=-0.067  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT   83 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~   83 (411)
                      ..++...|-.+.+...-.+.-.-+=+.+-+|++++      |..+-.+--++.-+|.++|.++.+.+..
T Consensus       139 ~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  139 RRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             hhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence            33677788888888888887777777788898744      6777777777777777777777766643

>PF13347 MFS_2: MFS/sugar transport protein

Probab=89.44  E-value=1.2  Score=44.87  Aligned_cols=75  Identities=21%  Similarity=0.212  Sum_probs=61.2

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChh-hhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccch
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK-QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMD   88 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~-~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~   88 (411)
                      .+.+.+++...+.++|.|...+...++.+|..|.++.| .++..+..++.+.+...+|..++..+.+++.+..||.
T Consensus       313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            56788889999999999999999999999999864422 1222577899999999999999999999886655553

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=88.84  E-value=2  Score=44.48  Aligned_cols=103  Identities=9%  Similarity=0.012  Sum_probs=72.5

Q ss_pred             HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223          255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL  334 (411)
Q Consensus       255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i  334 (411)
                      +..++..-+++.+-++++||.           -+..++++..++-+..++.              .+++.+++.-++.|+
T Consensus       129 ~G~~vG~~i~g~lsD~~GRk~-----------~~~~~~~~~~i~~~~~a~a--------------~~~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  129 LGVLVGSLIFGPLSDRFGRKP-----------VLLVSLLLFIIFGILTAFA--------------PNYWMFLIFRFLSGF  183 (521)
T ss_pred             HHHHHHHhhheehHhhcccHH-----------HHHHHHHHHHHHHHHHHHh--------------CcHHHHHHHHHHHHh
Confidence            444444444555555555542           1355666666655555543              378888899999999


Q ss_pred             HHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          335 SEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       335 ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      +..-.......++.+..+++.|+.++.+ ......++.+++.+++.+..
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~  231 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR  231 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            9999987777899999999999999999 66666666666666665533

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=88.61  E-value=0.0074  Score=61.03  Aligned_cols=108  Identities=14%  Similarity=0.150  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHH
Q 015223          254 YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFG  333 (411)
Q Consensus       254 ~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~  333 (411)
                      .+..++.+.+.+.+-++++||..           +.++.++..++.++.++...           ..+++++....++.|
T Consensus        56 ~~g~~~G~~~~g~~~d~~GRk~~-----------~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~R~~~G  113 (451)
T PF00083_consen   56 FIGAIVGALIFGFLADRYGRKPA-----------LIISALLMIIGSILIAFAPS-----------YNNFWMLLIGRFLIG  113 (451)
T ss_pred             Hhhhccccccccccccccccccc-----------cccccccccccccccccccc-----------ccccccccccccccc
Confidence            34455556666666666665531           35677777777776666420           126778888899999


Q ss_pred             HHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          334 LSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       334 ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      +|-....+....++.+.+|++.||.+..+......+|..++..+...+..
T Consensus       114 ~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~  163 (451)
T PF00083_consen  114 FGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY  163 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999887777899999999999999999999999999888877665533

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=88.31  E-value=3.5  Score=43.42  Aligned_cols=80  Identities=11%  Similarity=0.059  Sum_probs=45.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHhhcc-cCCCCeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhH
Q 015223          214 IIFNTILAQLQTFSVQQGSAMNN-KLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL  292 (411)
Q Consensus       214 ~~~~~~~~q~~s~~~~~~~~~~~-~~g~g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~  292 (411)
                      .+.|..+.|....++-+..-+.. +.. |+.+-.++....|.+.++++.|....+.++   +    |. -+  .+..++-
T Consensus       195 fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~~~lai~iF~~g~~~y~~~---~----p~-gs--p~t~i~~  263 (571)
T KOG1237|consen  195 FFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPTVLNALAILIFLPGFPFYRYK---K----PR-GS--PKTRIGQ  263 (571)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHHHHHHHHHHHHHcCceeEEee---C----CC-CC--chhHHHH
Confidence            34566666554444333322221 223 577778888999999998888764443221   1    11 12  3456788


Q ss_pred             HHHHHHHHHHHH
Q 015223          293 FLATFSMISAAL  304 (411)
Q Consensus       293 ~l~~l~~~~~~~  304 (411)
                      ++.+.+.-....
T Consensus       264 Vlvaa~~k~~~~  275 (571)
T KOG1237|consen  264 VLVAAAFKRKAV  275 (571)
T ss_pred             HHHHHHHHHhcc
Confidence            887777776543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=87.40  E-value=1.8  Score=39.47  Aligned_cols=80  Identities=14%  Similarity=0.096  Sum_probs=62.4

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHhhHHhhhhcc--ccchhH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF-AFSTGELVALTVLVWVQTH--SGMDVG   90 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~-~iNlG~~ig~~l~g~l~~~--~g~~~~   90 (411)
                      .....+.+.+.+.+++.|...|...+++.+.+++ .    ..|...++.... ..++|..+++.+++++...  .+|+..
T Consensus        92 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (338)
T COG0477          92 VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA  166 (338)
T ss_pred             chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            3566777788889999999999999999999986 2    126888888888 6888999999888777653  688887


Q ss_pred             HHHHHHHH
Q 015223           91 FGVSAAAM   98 (411)
Q Consensus        91 F~i~~~~~   98 (411)
                      |.+.....
T Consensus       167 ~~~~~~~~  174 (338)
T COG0477         167 FLLAALLG  174 (338)
T ss_pred             HHHHHHHH
Confidence            76665443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=86.83  E-value=0.12  Score=53.94  Aligned_cols=99  Identities=18%  Similarity=0.121  Sum_probs=3.0

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHHHHhhhhc----c------------c------------------CC--CccchHHHHHH
Q 015223          285 LQRIGFGLFLATFSMISAALMEKKRRDSA----L------------D------------------SG--KTLSIFSITPQ  328 (411)
Q Consensus       285 ~~k~~~G~~l~~l~~~~~~~~~~~~~~~~----~------------~------------------~~--~~~s~~~li~~  328 (411)
                      ++-+++|.+++++|.++.++.+-....+.    .            +                  ++  ....+++++.+
T Consensus        68 prwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g  147 (539)
T PF03137_consen   68 PRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILG  147 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHH
Confidence            34489999999999999988763221110    0            0                  00  01234568888


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          329 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       329 ~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      .++.|+|..-..+-..+++-+.++++..+.+.|+.+....+|..+|-.+++..-+
T Consensus       148 q~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~  202 (539)
T PF03137_consen  148 QLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLR  202 (539)
T ss_dssp             ----SSS------------------------------------------------
T ss_pred             HHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence            9999999999986666999999999999999999999999999888777765443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=84.66  E-value=46  Score=33.37  Aligned_cols=63  Identities=19%  Similarity=0.095  Sum_probs=51.7

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ++|.++.-.+.-|+-.+...+.....+.+..|++.|-+.+|.....-++|..+++.++-.+..
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            455555566777888888886666788999999999999999999999999999998877654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=84.33  E-value=3.6  Score=40.55  Aligned_cols=90  Identities=11%  Similarity=0.055  Sum_probs=64.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhh---HHHHHHHHHH
Q 015223          288 IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG---MQAFLTAMTY  364 (411)
Q Consensus       288 ~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~---~~g~~~g~~~  364 (411)
                      +.+|.++..+|.+++.+...-     .......+...+..+..++++|.+++-|....+..+|-+++   .+..+...++
T Consensus         4 I~~g~~~~~~G~~ll~l~~~~-----~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY   78 (372)
T PF00854_consen    4 ILLGSIVYLLGHVLLTLSAIP-----PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFY   78 (372)
T ss_dssp             HHHHHHHHHHHHHH--HHHTS-----SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhHHHHhc-----chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHH
Confidence            577888889998886665420     00000234556778888999999999999999999998876   4556667788


Q ss_pred             HHHhHHHHHHhHhhhhhc
Q 015223          365 CSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       365 l~~~~G~~lg~~l~~~~~  382 (411)
                      ...++|..++..+...+.
T Consensus        79 ~~in~G~~~~~~~~~~i~   96 (372)
T PF00854_consen   79 WGINIGSLFSPTLVPYIQ   96 (372)
T ss_dssp             HHHHHHHHHHHHCCCHHH
T ss_pred             HHHhhhhHhhcccchhhc
Confidence            899999999987777665

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=83.79  E-value=11  Score=34.07  Aligned_cols=63  Identities=11%  Similarity=0.023  Sum_probs=49.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh-hHHHHHHHHHHH-HHhHHHHHHhHhhhhhcc
Q 015223          321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK-GMQAFLTAMTYC-SYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~-~~~g~~~g~~~l-~~~~G~~lg~~l~~~~~~  383 (411)
                      +.++++...++.++++....+....++.+..|+ +.++...+.... ...+|..+++.+......
T Consensus        93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666777778999998888888999999998 778888888877 577888888866665543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=82.67  E-value=2.8  Score=41.98  Aligned_cols=80  Identities=11%  Similarity=0.120  Sum_probs=62.8

Q ss_pred             HHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc-chhHHHHHHHHHH
Q 015223           21 LALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMA   99 (411)
Q Consensus        21 ~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g-~~~~F~i~~~~~~   99 (411)
                      +.=+++++..|...+...+..++..|+++      -.++|++|.+..-.++.+||.+.+.+.+..| -|.+++.-.+++.
T Consensus       346 i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~  419 (438)
T COG2270         346 ILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLL  419 (438)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            33467899999999999999999999876      3779999999999999999999998876543 4566655555555


Q ss_pred             HHHHHHh
Q 015223          100 LGLFGVV  106 (411)
Q Consensus       100 l~~i~~~  106 (411)
                      ++++++.
T Consensus       420 iGl~~L~  426 (438)
T COG2270         420 IGLLLLL  426 (438)
T ss_pred             hhHhhEE
Confidence            5555444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=81.94  E-value=0.067  Score=54.06  Aligned_cols=80  Identities=11%  Similarity=-0.003  Sum_probs=65.5

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc---ccchhH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH---SGMDVG   90 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~---~g~~~~   90 (411)
                      .+...+.+++.++++|.|+..+....++.+..+++.      |+....+.....++|.+++..++-.+.+.   .+||+.
T Consensus       100 ~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~  173 (451)
T PF00083_consen  100 NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRIL  173 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc
Confidence            378889999999999999999999999999887644      78888899999999999888776544433   459999


Q ss_pred             HHHHHHHHH
Q 015223           91 FGVSAAAMA   99 (411)
Q Consensus        91 F~i~~~~~~   99 (411)
                      +.++.+..+
T Consensus       174 ~~~~~~~~l  182 (451)
T PF00083_consen  174 LIFGAIPSL  182 (451)
T ss_pred             ccccccccc
Confidence            987775543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	411
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		7e-09

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 153/353 (43%), Gaps = 38/353 (10%)
Query: 19  FFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL 78
           F+  L+L+A+GSG +KP + +   DQFDQSN   ++K    F+  YF  + G   A   +
Sbjct: 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA---FDMFYFTINFGSFFASLSM 168
Query: 79  VWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRN-----KRPQGSIFTPIAQVFVAAM 133
             +  + G  V FG+    M +       G   Y +     K P G  F P+ +  +   
Sbjct: 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHG--FLPVIRSALLTK 226
Query: 134 LKRKQICPSNPQMLHGLNQN----NVPNDSGSVFLTQRFRFL-----DKACIKVEDGTNK 184
           ++ K        ++ G++      N+P       L      +       A +++E    +
Sbjct: 227 VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERA--R 284
Query: 185 KESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV 244
           K  P        V+ V+ ++ ++ +FA    F ++  Q  +  + Q     N + K    
Sbjct: 285 KSHP-----DAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQA----NDMVKPQWF 335
Query: 245 PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAAL 304
            PA +Q++  +++++L+P ++ F +  A +  G +  ++ L+++G G+ +   S I    
Sbjct: 336 EPAMMQALNPLLVMLLIP-FNNFVLYPAIERMGVK--LTALRKMGAGIAITGLSWIVVGT 392
Query: 305 MEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQA 357
           ++       +D G  LSIF     + +    E+  +   +EF Y Q+ K M+ 
Sbjct: 393 IQLM-----MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG 440

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	411
2xut_A	524	Proton/peptide symporter family protein; transport	9e-85
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	8e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  267 bits (684), Expect = 9e-85
 Identities = 78/403 (19%), Positives = 153/403 (37%), Gaps = 23/403 (5%)

Query: 13  GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGEL 72
                 F+  L+L+A+GSG +KP + +   DQFDQSN          F+  YF  + G  
Sbjct: 106 EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS---LAQKAFDMFYFTINFGSF 162

Query: 73  VALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAA 132
            A   +  +  + G  V FG+    M +       G   Y +  P+         V  +A
Sbjct: 163 FASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSA 222

Query: 133 MLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKV-----EDGTNKKES 187
           +L + +   +   +L  +   +      ++        L  A + V        + + E 
Sbjct: 223 LLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLER 282

Query: 188 PWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPA 247
             +      V+ V+ ++ ++ +FA    F ++  Q  +  + Q + M     K     PA
Sbjct: 283 ARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM----VKPQWFEPA 338

Query: 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEK 307
            +Q++  +++++L+P  +    P   +       ++ L+++G G+ +   S I    ++ 
Sbjct: 339 MMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSWIVVGTIQL 395

Query: 308 KRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSY 367
                  D G  LSIF     + +    E+  +   +EF Y Q+ K M+  + +    S 
Sbjct: 396 MM-----DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSV 450

Query: 368 SFGFYLSSLLVSFVNKVTSSSSNRGWLSENDLSTKTGLIFSTG 410
           + G     L    V   T +      +      T   + F  G
Sbjct: 451 TVGNLWVLLANVSVKSPTVTE---QIVQTGMSVTAFQMFFFAG 490

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 72.1 bits (177), Expect = 8e-14
 Identities = 66/393 (16%), Positives = 138/393 (35%), Gaps = 68/393 (17%)

Query: 16  ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVAL 75
           AS  F ++ L+ IG+G +KPN+       +D+ + +      + F+   F  + G  +A 
Sbjct: 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAP 163

Query: 76  TVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYY--------------RNKRPQGSI 121
            ++   Q  +G  V F ++A  M +GL     G                     +P    
Sbjct: 164 LIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVK 223

Query: 122 FTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDG 181
            +     F+A ++           +++ +  N++P     + +           +     
Sbjct: 224 VSLAVAGFIAIIV-----------VMNLVGWNSLPAYINLLTI-----VAIAIPVFY--F 265

Query: 182 TNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMN---NKL 238
                S      VT  E ++ ++S +P+F   ++F  I  Q           +     + 
Sbjct: 266 AWMISSVK----VTSTEHLR-VVSYIPLFIAAVLFWAIEEQ-------GSVVLATFAAER 313

Query: 239 TKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFS 298
             +   P +  QS+  + +++  P +   +  + +         S   +   GL  A  S
Sbjct: 314 VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN------QPSSPTKFAVGLMFAGLS 367

Query: 299 ---MISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM 355
              M     +          SGK  S   +   + +  L EM  +   +    K + K  
Sbjct: 368 FLLMAIPGAL-------YGTSGKV-SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF 419

Query: 356 QAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSS 388
            + + +M + S S G  L++ LV+  N  +  +
Sbjct: 420 NSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVA 452

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 37/260 (14%), Positives = 64/260 (24%), Gaps = 79/260 (30%)

Query: 72  LVALTVLVWVQTHSGMDVGFGVSA-AAMAL-----------GLFGVVSG----------- 108
           L+ L     V    G+ +G G +  A                +F +              
Sbjct: 144 LLELRPAKNVLID-GV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 109 --TLYYR-----NKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPN---- 157
              L Y+       R   S    +    + A L+R          L  L   NV N    
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKAW 259

Query: 158 ---DSGS-VFLTQRFRFLDKACIKVEDGTNKKESPW--RLCTVTQVEQVKVLISVV---- 207
              +    + LT R     K                     T+T  E   +L+  +    
Sbjct: 260 NAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 208 ---PIFACTI---IFNTILAQL-------QTFSVQQGSAMNNKLTKNF-HVPPASLQS-- 251
              P    T      + I   +         +       +   +  +   + PA  +   
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 252 -----------IPYIMLVIL 260
                      IP I+L ++
Sbjct: 376 DRLSVFPPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	411
2xut_A	524	Proton/peptide symporter family protein; transport	99.79
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.79
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.44
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.33
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.32
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.66
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.58
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.2
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.15
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.86
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.76
2xut_A	524	Proton/peptide symporter family protein; transport	97.6
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.33
2cfq_A	417	Lactose permease; transport, transport mechanism,	96.4

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.79  E-value=1.2e-19  Score=185.40  Aligned_cols=351  Identities=20%  Similarity=0.286  Sum_probs=208.1

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++++++.++|.|...|...+++.|.+++++.   .++...+++++.+.++|..+||.+++++.++.||++.|++.
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~  184 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP  184 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            567888999999999999999999999999987541   11366788899999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223           95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA  174 (411)
Q Consensus        95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  174 (411)
                      ++..+++.+.++..++...+.+|++++..+..+.+....+++....+ ............  .......+.+....+..+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  261 (524)
T 2xut_A          185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGV--SAAYALVNIPTLGIVAGL  261 (524)
T ss_dssp             HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHH--HHHHTGGGTTTTCSSHHH
T ss_pred             HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhh--hhhhhhcccchhhhhhhh
Confidence            88877776666554444433233333222222222222111100000 000000000000  000000000000000000


Q ss_pred             hhhhccC-CCCCCCCc-------ccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCC
Q 015223          175 CIKVEDG-TNKKESPW-------RLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPP  246 (411)
Q Consensus       175 ~~~~~~~-~~~~~~~~-------~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~  246 (411)
                      ....... ......+|       +.++.++.+++++.+...+++.....++..+.|..+.+.++..+++..   .+ .+.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~  337 (524)
T 2xut_A          262 CCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEP  337 (524)
T ss_dssp             HHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCH
T ss_pred             hhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecH
Confidence            0000000 00000001       001111223455555566666666777777777766666665544332   11 356


Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +.+..++++..++..|+.+++..+..+|++++   .++.+++.+|.++.++++++++..+..+.     ++...+.+|++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  409 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMD-----GGSALSIFWQI  409 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT-----TTCCCCSHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCcCHHHHH
Confidence            77788888888899999998865555554221   35567788899998888887776532110     01135788899


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      +.+++.++++.+..+...+++.+.+|+++||.++|++++..++|+.+|+.+.+.+..
T Consensus       410 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          410 LPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999888999999999999999999999999999999999987754

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.79  E-value=7.3e-18  Score=170.52  Aligned_cols=323  Identities=19%  Similarity=0.246  Sum_probs=213.8

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV   93 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i   93 (411)
                      .+.+.++++++++++|.|...|...+++.|.+++++.+    |..++++++.+.++|..+||.+++++.++.||++.|++
T Consensus       106 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~  181 (491)
T 4aps_A          106 FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL  181 (491)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            35677889999999999999999999999999975532    78899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccceec-c--CCCCC-cchhHHHHHH-------------HHHHhhcccCCCCCccccccCCCCCC
Q 015223           94 SAAAMALGLFGVVSGTLYYRN-K--RPQGS-IFTPIAQVFV-------------AAMLKRKQICPSNPQMLHGLNQNNVP  156 (411)
Q Consensus        94 ~~~~~~l~~i~~~~~~~~~~~-~--~p~~~-~~~~~~~v~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (411)
                      .++..+++++.++..+++..+ +  +|+.. ...+..+...             ......  .   .             
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~--~---~-------------  243 (491)
T 4aps_A          182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLV--G---W-------------  243 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHH--S---S-------------
T ss_pred             HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhc--c---C-------------
Confidence            988777777666544443321 1  12111 1111111000             000000  0   0             


Q ss_pred             CCCCccccccchh-hhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHh-h
Q 015223          157 NDSGSVFLTQRFR-FLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSA-M  234 (411)
Q Consensus       157 ~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~-~  234 (411)
                         ...++..... ..........     ....++... .+..++++.....++++....++..+.+..+.+.....+ .
T Consensus       244 ---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (491)
T 4aps_A          244 ---NSLPAYINLLTIVAIAIPVFY-----FAWMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERV  314 (491)
T ss_dssp             ---CCTTHHHHHHHHHHHHHHHHH-----HHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSC
T ss_pred             ---cccccchhhhhHHHHHHHHHH-----HHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHh
Confidence               0000000000 0000000000     000011001 112345566666777777888888888876654333321 1


Q ss_pred             cccCCCCeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcc
Q 015223          235 NNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSAL  314 (411)
Q Consensus       235 ~~~~g~g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~  314 (411)
                      +.    + ..+.+.+..++.+..++..++.+++.+++.+|.      .....++..|.++.+++++++........   +
T Consensus       315 ~~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  380 (491)
T 4aps_A          315 DS----S-WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALYG---T  380 (491)
T ss_dssp             CC----S-SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHCC---C
T ss_pred             cc----C-ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence            11    1 145778889999999999999999888776653      35567788999999999988887653211   0


Q ss_pred             cCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          315 DSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       315 ~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                        ..+.+.+|+++.+++.++|+.+..+..++++.+..|++.||.++|+++....+|+.+++.+.+.+..
T Consensus       381 --~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~  447 (491)
T 4aps_A          381 --SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA  447 (491)
T ss_dssp             --CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             --CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              1136788899999999999999998888999999999999999999999999999999999887754

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.44  E-value=2.5e-12  Score=127.73  Aligned_cols=286  Identities=9%  Similarity=-0.058  Sum_probs=165.9

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc-chhHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFG   92 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g-~~~~F~   92 (411)
                      .+.+.+++++++.++|.|...|...+++.|.+++++      |+++++++..+.++|.++||.+++++.+..| |++.|+
T Consensus       117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~  190 (451)
T 1pw4_A          117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY  190 (451)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred             ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            345678889999999999999999999999998643      8999999999999999999999999888898 999999


Q ss_pred             HHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhh
Q 015223           93 VSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLD  172 (411)
Q Consensus        93 i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  172 (411)
                      +.++..++..+......++    .|+.....               ...+... ..+.+.        .....+...+-+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------------~~~~~~~-~~~~~~--------~~~~~~~~~~~~  242 (451)
T 1pw4_A          191 MPAFCAILVALFAFAMMRD----TPQSCGLP---------------PIEEYKN-DYPDDY--------NEKAEQELTAKQ  242 (451)
T ss_dssp             HHHHHHHHHHHHHHHHCCC----SSTTTCCC---------------SCTTTCC-C---------------------CCTH
T ss_pred             HHHHHHHHHHHHHHhhccC----CHhhcCCC---------------Chhhhcc-cccccc--------hhhhhccccccc
Confidence            9887665554443332221    11110000               0000000 000000        000000000000


Q ss_pred             hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCee-eCCccccc
Q 015223          173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFH-VPPASLQS  251 (411)
Q Consensus       173 ~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~-i~~~~l~~  251 (411)
                      ..              ++    +-..++ .+.   .+.+.....+..+....+.+...   +....+  .. ...+.+..
T Consensus       243 ~~--------------~~----~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g--~~~~~~~~~~~  295 (451)
T 1pw4_A          243 IF--------------MQ----YVLPNK-LLW---YIAIANVFVYLLRYGILDWSPTY---LKEVKH--FALDKSSWAYF  295 (451)
T ss_dssp             HH--------------HH----HTSSCH-HHH---HHHHHHHHHHHHHHHHHHHHHHH---BTTBSC--CCHHHHHHHHH
T ss_pred             ch--------------HH----HHHcCH-HHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHhcC--CCHHHHHHHHH
Confidence            00              00    000111 111   12222222222222221111111   111122  11 11234556


Q ss_pred             hhHHHHHHHHHhhhHhHHhh--hhhccCCCCCCCchhHHHHhHHHHH-HHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223          252 IPYIMLVILVPLYDKFFVPF--ARKYTGHESGISPLQRIGFGLFLAT-FSMISAALMEKKRRDSALDSGKTLSIFSITPQ  328 (411)
Q Consensus       252 in~l~ill~~p~~~~l~~~~--~~~~~~~~~~~s~~~k~~~G~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~  328 (411)
                      ...+..++..++.+++.+++  .+|           +.+.++.++.+ ++++++....            ..+.++....
T Consensus       296 ~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~  352 (451)
T 1pw4_A          296 LYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMTLVTIATIVYWMNP------------AGNPTVDMIC  352 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHHHHHHHHHHTTSCC------------TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHHHHHHHHHHHHHhc------------ccCHHHHHHH
Confidence            66666777777777776554  222           22344444443 4544443221            1356666777


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhH-HHHHHhHhhhhhcc
Q 015223          329 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSF-GFYLSSLLVSFVNK  383 (411)
Q Consensus       329 ~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~-G~~lg~~l~~~~~~  383 (411)
                      .++.+++.....+....++.+..|++.||.++|+.+....+ |..+++.+.+.+..
T Consensus       353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~  408 (451)
T 1pw4_A          353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  408 (451)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888777777778999999999999999999999999 99999999887644

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.33  E-value=5e-12  Score=122.93  Aligned_cols=260  Identities=8%  Similarity=-0.024  Sum_probs=157.0

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS   94 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~   94 (411)
                      +.+.+++++.+.+++.+...|...+++.|.+++++      |.++++++....++|..++|.+++++.++++|++.|++.
T Consensus        87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            56788899999999999999999999999998654      789999999999999999999999999989999999987


Q ss_pred             HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223           95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA  174 (411)
Q Consensus        95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  174 (411)
                      ++..++..+....   ..++.+++.++                    ++.                 .            
T Consensus       161 ~~~~~~~~~~~~~---~~~~~~~~~~~--------------------~~~-----------------~------------  188 (375)
T 2gfp_A          161 LVLCAGVTFSMAR---WMPETRPVDAP--------------------RTR-----------------L------------  188 (375)
T ss_dssp             HHHHHHHHCCCCC---SSCCCSTTTCC--------------------CCC-----------------T------------
T ss_pred             HHHHHHHHHHHHH---HCcccCCCCcc--------------------ccc-----------------H------------
Confidence            7654443332221   22211111000                    000                 0            


Q ss_pred             hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhh---hHHHHHHHHhhcccCCCCeeeCCccccc
Q 015223          175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQL---QTFSVQQGSAMNNKLTKNFHVPPASLQS  251 (411)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~---~s~~~~~~~~~~~~~g~g~~i~~~~l~~  251 (411)
                                . ..++    +-.+++ ++....   +.....+..+...   .+.+.++..+.+..       ..+.+..
T Consensus       189 ----------~-~~~~----~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------~~g~~~~  242 (375)
T 2gfp_A          189 ----------L-TSYK----TLFGNS-GFNCYL---LMLIGGLAGIAAFEACSGVLMGAVLGLSSM-------TVSILFI  242 (375)
T ss_dssp             ----------T-TCST----HHHHHH-HHHHHH---HHHHHHHHHHHHHHHHCSCSSHHHHHHHHH-------HHHHHHH
T ss_pred             ----------H-HHHH----HHhcCc-chHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-------HHHHHHH
Confidence                      0 0000    001222 222211   1111112111111   11222221222211       1233445


Q ss_pred             hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHH-HHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223          252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFL-ATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL  330 (411)
Q Consensus       252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~  330 (411)
                      ...+..++..++.+++.    +|.       +.  ++..+..+ ...+.........      .    ..+.+.++...+
T Consensus       243 ~~~~~~~~~~~~~~~l~----~r~-------~~--~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~  299 (375)
T 2gfp_A          243 LPIPAAFFGAWFAGRPN----KRF-------ST--LMWQSVICCLLAGLLMWIPDWF------G----VMNVWTLLVPAA  299 (375)
T ss_dssp             THHHHHHHHHHHHHTTT----THH-------HH--HHHHHHHHHHHTSSSSSHHHHH------H----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----HHH-------HH--HHHHHHHHHHHHHHHHHHHhhh------c----cccHHHHHHHHH
Confidence            55566666666665544    222       11  34445544 3333322121110      0    124555667788


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          331 IFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       331 l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      +.+++.....+....++.+..| +.||.++|+.+....+|..+++.+.+.+.
T Consensus       300 l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  350 (375)
T 2gfp_A          300 LFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP  350 (375)
T ss_dssp             HHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988888899999999 89999999999999999999998887764

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.32  E-value=2.6e-10  Score=112.73  Aligned_cols=266  Identities=12%  Similarity=0.020  Sum_probs=158.6

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh-cccc-----
Q 015223           13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ-THSG-----   86 (411)
Q Consensus        13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~-~~~g-----   86 (411)
                      ..+.+.+++++++.++|.|...|...+++.|.+++++      |.++++++....++|..+++.+++++. +..+     
T Consensus       114 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  187 (438)
T 3o7q_A          114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD  187 (438)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred             cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            3567889999999999999999999999999998755      789999999999999999999999988 5554     


Q ss_pred             --------------------chhHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCcc
Q 015223           87 --------------------MDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQM  146 (411)
Q Consensus        87 --------------------~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  146 (411)
                                          |++.|++.++..++..+.++..  +.    |+.++..                 +.++  
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~----p~~~~~~-----------------~~~~--  242 (438)
T 3o7q_A          188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT--KF----PALQSDN-----------------HSDA--  242 (438)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC----CCCTTTC-----------------CCCS--
T ss_pred             ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--cC----Ccccccc-----------------cccc--
Confidence                                8999977665544444433331  11    1110000                 0000  


Q ss_pred             ccccCCCCCCCCCCccccccchhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHH-HHHHHHHHHHHHhhhhH
Q 015223          147 LHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVP-IFACTIIFNTILAQLQT  225 (411)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-l~~~~~~~~~~~~q~~s  225 (411)
                                     ........+.+                  +.     +++ .+...+. .+.....+....... +
T Consensus       243 ---------------~~~~~~~~~~~------------------~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~-~  282 (438)
T 3o7q_A          243 ---------------KQGSFSASLSR------------------LA-----RIR-HWRWAVLAQFCYVGAQTACWSYL-I  282 (438)
T ss_dssp             ---------------STTSHHHHHHH------------------HT-----TCS-HHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             ---------------cccchhhhHHH------------------HH-----hCh-HHHHHHHHHHHHHHHHHHHHHHH-H
Confidence                           00000000000                  00     011 1111111 111111111111111 2


Q ss_pred             HH-HHHHHhhcccCCCCeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHH
Q 015223          226 FS-VQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAAL  304 (411)
Q Consensus       226 ~~-~~~~~~~~~~~g~g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~  304 (411)
                      .| .++..+++.       ...+.+..+..+..++..++.+++.+++.+|           +-+..+.++.+++++....
T Consensus       283 ~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~  344 (438)
T 3o7q_A          283 RYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----------KVLAAYALIAMALCLISAF  344 (438)
T ss_dssp             HHHHHHSTTCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccCCcch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHH
Confidence            33 222111110       1123445555566677777777777655433           2345666666666655544


Q ss_pred             HHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223          305 MEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  384 (411)
Q Consensus       305 ~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~  384 (411)
                      ..              +. +.+...++.+++.....+...++..+..|++ ++.++++.. ...+|+.+++.+.+.+...
T Consensus       345 ~~--------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~  407 (438)
T 3o7q_A          345 AG--------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA  407 (438)
T ss_dssp             CC--------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred             cC--------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence            21              22 3344557888888888888888888999988 889988877 6679999999988876553

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.66  E-value=1.3e-06  Score=87.43  Aligned_cols=79  Identities=15%  Similarity=0.085  Sum_probs=65.2

Q ss_pred             CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc--------
Q 015223           13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH--------   84 (411)
Q Consensus        13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~--------   84 (411)
                      ..+.+.++++|+++++|.|+..+...++++|..|++.      |++..+++..+..+|.++++.++..+...        
T Consensus       123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  196 (491)
T 4gc0_A          123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT  196 (491)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence            4567889999999999999999999999999998644      89999999999999999999888766543        


Q ss_pred             ccchhHHHHHHHH
Q 015223           85 SGMDVGFGVSAAA   97 (411)
Q Consensus        85 ~g~~~~F~i~~~~   97 (411)
                      ..|++.+.+..+.
T Consensus       197 ~~~~~~~~~~~~~  209 (491)
T 4gc0_A          197 DGWRYMFASECIP  209 (491)
T ss_dssp             THHHHHHHTTHHH
T ss_pred             hhhHHHhhhhhhh
Confidence            3466666655544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.58  E-value=2.6e-08  Score=98.57  Aligned_cols=110  Identities=9%  Similarity=0.060  Sum_probs=76.3

Q ss_pred             cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223          248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP  327 (411)
Q Consensus       248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~  327 (411)
                      .+..++.+..++..++.+++.+++.+|+           .+..+.++.+++++..+..              .+.++++.
T Consensus       263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~  317 (417)
T 2cfq_A          263 YVTTMGELLNASIMFFAPLIINRIGGKN-----------ALLLAGTIMSVRIIGSSFA--------------TSALEVVI  317 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHH-----------HHHHHHHHHHHHHHHHTTC--------------CSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcHHH-----------HHHHHHHHHHHHHHHHHHh--------------ccHHHHHH
Confidence            3455666666667777788776665442           2455666666665444321              24555555


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHH-HHHHHhHHHHHHhHhhhhhc
Q 015223          328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM-TYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~-~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ..++.+++.....++...++.+..|++.||...|+ ++...++|+.+++.+.+.+.
T Consensus       318 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~  373 (417)
T 2cfq_A          318 LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY  373 (417)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence            66677777766666667899999999999999998 57888899999988887553

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.20  E-value=1.4e-05  Score=78.43  Aligned_cols=114  Identities=14%  Similarity=0.050  Sum_probs=95.0

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +++.+...+...+..|+.+++.+++++|+           -+.+|.++.+++.++......           ..+.++++
T Consensus        64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~  121 (438)
T 3o7q_A           64 GLIQSAFYFGYFIIPIPAGILMKKLSYKA-----------GIITGLFLYALGAALFWPAAE-----------IMNYTLFL  121 (438)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHSCHHH-----------HHHHHHHHHHHHHHHHHHHHH-----------TTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHhccc-----------cccHHHHH
Confidence            45567777777888999999988777653           267788888888887744321           24688888


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ...++.|+|.....+....++.+..|++.|+.++|+.....++|..+++.+++.+.
T Consensus       122 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888999999999999999999999999999999999998875

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.15  E-value=2.2e-05  Score=77.29  Aligned_cols=115  Identities=13%  Similarity=-0.037  Sum_probs=93.6

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.++..+...+..|+.+++.+++++|+           -+.+|.++.+++.++.++....          ..+.+++
T Consensus        64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l  122 (451)
T 1pw4_A           64 LGFALSGISIAYGFSKFIMGSVSDRSNPRV-----------FLPAGLILAAAVMLFMGFVPWA----------TSSIAVM  122 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-----------HHHHHHHHHHHHHHHHHHCHHH----------HSSSSHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhcCchH-----------HHHHHHHHHHHHHHHHHhhhhc----------cccHHHH
Confidence            345667777888888999999888776552           3577888888888888773210          0257778


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~  381 (411)
                      +...++.|++.....+...+++.+..|++.|+.++|++....++|..+|+.+++.+
T Consensus       123 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          123 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999889999999999999999999999999999999888764

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.86  E-value=8.6e-05  Score=71.39  Aligned_cols=111  Identities=10%  Similarity=0.043  Sum_probs=91.5

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT  326 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li  326 (411)
                      +++.++..+...+..|+.+++.+++.+|+           -+..+.++.+++.+.....+              +.++++
T Consensus        38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~l~   92 (375)
T 2gfp_A           38 QSVMGAYLLTYGVSQLFYGPISDRVGRRP-----------VILVGMSIFMLATLVAVTTS--------------SLTVLI   92 (375)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHTTSCCCC-----------CCHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCch-----------hHHHHHHHHHHHHHHHHHhc--------------cHHHHH
Confidence            45567777788888999999887766542           14578888888888777653              577788


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      ...++.+++.....+....++.+..|++.|+.++|.+.....+|..+++.+++.+.
T Consensus        93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  148 (375)
T 2gfp_A           93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD  148 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            88999999999999988899999999999999999999999999999998877654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.76  E-value=0.00041  Score=69.17  Aligned_cols=113  Identities=12%  Similarity=0.066  Sum_probs=91.2

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHh-hhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVP-FARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFS  324 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~-~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~  324 (411)
                      .+++.++..+...+..|+.+++.++ +++|+           -+..|.++.+++.++.++.              .+.++
T Consensus        56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~  110 (491)
T 4aps_A           56 AASIMAIYASMVYLSGTIGGFVADRIIGARP-----------AVFWGGVLIMLGHIVLALP--------------FGASA  110 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH-----------HHHHHHHHHHHHHHHHHSC--------------CSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchH-----------HHHHHHHHHHHHHHHHHHh--------------hhHHH
Confidence            3456677778888899999999887 56553           2567888888887776642              36777


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhH--HHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223          325 ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM--QAFLTAMTYCSYSFGFYLSSLLVSFVNK  383 (411)
Q Consensus       325 li~~~~l~~ige~l~~~~~~~~~~~~aP~~~--~g~~~g~~~l~~~~G~~lg~~l~~~~~~  383 (411)
                      ++...+++|+|+....+...+++.+..|++.  |+.+++.++...++|..+|+.+++.+..
T Consensus       111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  171 (491)
T 4aps_A          111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE  171 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888999999999999988899999999988  8888888999999999999888876543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.60  E-value=0.00034  Score=70.48  Aligned_cols=111  Identities=13%  Similarity=0.085  Sum_probs=85.4

Q ss_pred             ccccchhHHHHHHHHHhhhHhHHhh-hhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          247 ASLQSIPYIMLVILVPLYDKFFVPF-ARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       247 ~~l~~in~l~ill~~p~~~~l~~~~-~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      +++.++..+..++..|+.+++.+++ ++|           +-+.++.++.+++.++.++.             +.+.+++
T Consensus        57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~  112 (524)
T 2xut_A           57 KDVFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIF-------------EHSVQGF  112 (524)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHT-------------SSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHh-------------cccHHHH
Confidence            3455666677778888888888666 443           23567777777777776653             1267778


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHH---HHHHHhHHHHHHhHhhhhh
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM---TYCSYSFGFYLSSLLVSFV  381 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~---~~l~~~~G~~lg~~l~~~~  381 (411)
                      +...++.|+++....+...+++.+..|++.|+..++.   ++...++|..+|+.+++.+
T Consensus       113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l  171 (524)
T 2xut_A          113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL  171 (524)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred             HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999998999999999999877666   8888888888888776654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.33  E-value=0.0015  Score=65.06  Aligned_cols=125  Identities=14%  Similarity=0.033  Sum_probs=91.4

Q ss_pred             ccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCC----CccchHH
Q 015223          249 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSG----KTLSIFS  324 (411)
Q Consensus       249 l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~----~~~s~~~  324 (411)
                      +.+...+..++..++.+++-++++||+           -+.++.++..++.+..++.............    ...+++.
T Consensus        60 ~~s~~~~G~~iG~~~~G~laDr~GRk~-----------~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~  128 (491)
T 4gc0_A           60 CVASALIGCIIGGALGGYCSNRFGRRD-----------SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPE  128 (491)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHH
Confidence            344455667788888899888888764           2567777777777776643210000000000    0236777


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223          325 ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV  384 (411)
Q Consensus       325 li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~  384 (411)
                      ++..-+++|+|+....+....++.+.+|++.|+...+++.....+|..++..+.......
T Consensus       129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~  188 (491)
T 4gc0_A          129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS  188 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence            889999999999999988889999999999999999999999999999998887766543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=96.40  E-value=0.0013  Score=64.49  Aligned_cols=85  Identities=8%  Similarity=-0.104  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223           17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA-AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA   95 (411)
Q Consensus        17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~-~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~   95 (411)
                      +.+.+...+.+++.+...+...+++.|.+|++.      |++++++ +....++|..++|.++|++.++.||+..|.+.+
T Consensus       313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~  386 (417)
T 2cfq_A          313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence            344455555666666666777788899887532      7888888 467788999999999999999889999998888


Q ss_pred             HHHHHHHHHHhh
Q 015223           96 AAMALGLFGVVS  107 (411)
Q Consensus        96 ~~~~l~~i~~~~  107 (411)
                      +..+++.++.+.
T Consensus       387 ~~~l~~~~~~~~  398 (417)
T 2cfq_A          387 LVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            776767665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	411
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.24
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.7
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.3
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.44

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.7e-10  Score=111.35  Aligned_cols=87  Identities=11%  Similarity=0.066  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-ccchhHHHH
Q 015223           15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-SGMDVGFGV   93 (411)
Q Consensus        15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-~g~~~~F~i   93 (411)
                      +...+++.+.+.+++.|...|...++++|.+++++      |+++++++..+.++|..+++.+++++.+. .+|++.|.+
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~  188 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  188 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence            45678889999999999999999999999998644      89999999999999999999998876554 589999988


Q ss_pred             HHHHHHHHHHHHhh
Q 015223           94 SAAAMALGLFGVVS  107 (411)
Q Consensus        94 ~~~~~~l~~i~~~~  107 (411)
                      .++..++..++.+.
T Consensus       189 ~~~~~~~~~~~~~~  202 (447)
T d1pw4a_         189 PAFCAILVALFAFA  202 (447)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHH
Confidence            77665544444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=1.2e-07  Score=88.79  Aligned_cols=107  Identities=8%  Similarity=0.056  Sum_probs=77.2

Q ss_pred             chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223          251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL  330 (411)
Q Consensus       251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~  330 (411)
                      ....+..++..++.+++.+|..           ..+-+.++.++.+++++.....              .+.++++...+
T Consensus       266 ~~~~~~~~~~~~~~~~l~~r~~-----------~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~  320 (417)
T d1pv7a_         266 TMGELLNASIMFFAPLIINRIG-----------GKNALLLAGTIMSVRIIGSSFA--------------TSALEVVILKT  320 (417)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHHHTC--------------CCHHHHHHHHH
T ss_pred             cccccccccchhhhhhhhcccc-----------cccchhhhHHHHHHhhhccccc--------------cccchhhHHHH
Confidence            3334444455555555543332           2333566777777766666542              36777788889


Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHH-HHHHhHHHHHHhHhhhhhc
Q 015223          331 IFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMT-YCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       331 l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~-~l~~~~G~~lg~~l~~~~~  382 (411)
                      +.+++..+..+...+++.+..|++.||..+|+. .+..++|..+++.+.+.+.
T Consensus       321 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~  373 (417)
T d1pv7a_         321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY  373 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988889999999999999999975 5677899999998887654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=3.8e-06  Score=79.96  Aligned_cols=116  Identities=13%  Similarity=-0.042  Sum_probs=94.8

Q ss_pred             CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223          246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI  325 (411)
Q Consensus       246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l  325 (411)
                      .+++.+...+...+..|+.+++.+++++|+           -+.+|.++.+++.++.+.....          ..+.+++
T Consensus        61 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  119 (447)
T d1pw4a_          61 LGFALSGISIAYGFSKFIMGSVSDRSNPRV-----------FLPAGLILAAAVMLFMGFVPWA----------TSSIAVM  119 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-----------HHHHHHHHHHHHHHHHHHCHHH----------HSSSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCchH-----------HHHHHHHHHHHHHhhccccchh----------hhhHHHH
Confidence            345677777888889999999998877653           2567888888888877765421          2367778


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223          326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN  382 (411)
Q Consensus       326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~  382 (411)
                      +...++.++++....+....++.+..|++.|+.++|++.....+|..+++.+.....
T Consensus       120 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_         120 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence            888899999999999888899999999999999999999999999999988777543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=6.5e-05  Score=69.34  Aligned_cols=89  Identities=9%  Similarity=-0.071  Sum_probs=73.8

Q ss_pred             chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223           14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY-FAFSTGELVALTVLVWVQTHSGMDVGFG   92 (411)
Q Consensus        14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y-~~iNlG~~ig~~l~g~l~~~~g~~~~F~   92 (411)
                      .+.+..++...+.+++.+...|...+++.|.+|++.      |++++++.+ ...++|..++|.++|++.|++||+..|+
T Consensus       310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~  383 (417)
T d1pv7a_         310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL  383 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence            456677788889999999999999999999998644      788999865 4567999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q 015223           93 VSAAAMALGLFGVVSG  108 (411)
Q Consensus        93 i~~~~~~l~~i~~~~~  108 (411)
                      +.++..++..++.++.
T Consensus       384 ~~~~~~~~~~~~~~~~  399 (417)
T d1pv7a_         384 VLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8887666665555443