Citrus Sinensis ID: 015251

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
Protein Sequence
MELDVKQKVNKRSKLEDDHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccEEEEEccccccccEEEEccccccccEEEcccccccccccEEEEcccccEEEEEcccccEEEEEEEcccccEEEcccccccccccEEEEEEEEcccccEEEEEEEEEEcccccccccccccccccccEEEEEEccccccEEccccccccccccccEEEcccEEEEEEccccccccEEEEEEccccEEEEEccccccccccccEEEEEEccEEEEEEEccccEEEEEEEEEccccccEEEEEEEcccccccccccccccccEEcccccccEEEEEEEcccccEEEEEEccEEEEEEccccEEEEEEEEcccccEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccEEEEEEEccEEEEEccccccccccccccccccccccccccEEEEEEEccEEEEEEEcccccEEEEEccccccEEEEcccccccccEEEEEEEEccccccEEEEEEEEcccccccccEEEccccccccEEEEEEEEccccEEEEEccccccccccccEEEEEEEEEEEEEccccccEEEEEEEccccccccccccccccccccEEEEEEEccEEEEEEEccccEEEEEEEEcccccEEcEEEEEEccccccccccccccccEEEEccccEEEEEEEEEEcccEEEEEcccEEEEEEccccccEEEEEEEccccccEEEEEEcEEEEccccccc
Coil and Loop (DISEMBL)
MELDVKQKVnkrskleddhqqatgmetLPREIVLHILLRLPITSLVQFKFVCRAWRALAqdpllanlhnttstskaeknpclilhcdfpirnqlcfidfsdnqdkvrkfnmpfqakmpefdavgscngllclsdslfndaiciynpftrdyielpksmqypdqevvfgfgfhpvskeYKVIKIVYYRkscsnssfqrtrrviyprsdvqvytvgspawrskgklAYQFVRRPSEALVKGrlhwvtrprryspvrgiVSFDIADeqfrevpkpdcgglnrcnyHLTVLSGCLSVavygnygkLEIWVMKDYNvkeswakelnigayipkglkqsldrplkiwknslngRVVRVVCILEKGEILLEYKSRvlvsydpkrrtfnefvfkgtpnwFQTIVHQgsfnwidtphdl
Flexible Loop (DISEMBL)
meldvkqkvnkrskleddhqqatgmeTLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNttstskaeknpCLILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYrkscsnssfqrtrrviyprsdvqvytvgspawrskgklayqfvrrpsealvkgrlhwvtrprryspvrGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKiwknslngrvvRVVCILEkgeilleyksrvlvsydpkRRTFNEFVFKGTPNWFQTIVHqgsfnwidTPHDL
Low Complexity Region (SEG)
MELDVKQKVNKRSKLEDDHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL
Disordered region (IsUnstruct)
***************************LPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTS***AEKNPCLILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWID*****
Disordered Region (DISOPRED)
*****************************REIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWID*****
Disordered Region (DISEMBL)
********************QATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL
Disordered Region (DISPRO)
************************METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELDVKQKVNKRSKLEDDHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	410	2.2.26 [Sep-21-2011]
Q9SFC7	417	F-box protein At3g07870 O	yes	no	0.929	0.913	0.576	1e-133
Q9SU30	413	F-box protein CPR30 OS=Ar	no	no	0.817	0.811	0.278	9e-24
Q8GXC7	427	F-box/kelch-repeat protei	no	no	0.702	0.674	0.256	2e-21
Q9LIR8	364	F-box/kelch-repeat protei	no	no	0.675	0.760	0.264	9e-21
Q9LU24	360	Putative F-box protein At	no	no	0.485	0.552	0.238	2e-14
Q9FGY4	359	F-box protein At5g49610 O	no	no	0.797	0.910	0.254	6e-14
Q9SUY0	402	F-box protein At4g22390 O	no	no	0.668	0.681	0.234	8e-14
Q9LTC3	362	Putative F-box protein At	no	no	0.678	0.767	0.244	7e-13
Q9LQL5	302	Putative F-box protein At	no	no	0.651	0.884	0.254	1e-12
Q9SSQ2	423	F-box protein At1g52490 O	no	no	0.663	0.643	0.246	5e-12

>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1

 Score =  475 bits (1222), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/397 (57%), Positives = 298/397 (75%), Gaps = 16/397 (4%)

Query: 25  METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLIL 84
           +E+LP +I+  I  RLPI+S+ +  FVCR+WR++     L      +S+S +   PCL+L
Sbjct: 25  LESLPEDIIADIFSRLPISSIARLMFVCRSWRSV-----LTQHGRLSSSSSSPTKPCLLL 79

Query: 85  HCDFPIRNQLCFIDFSDNQDKVR--KFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAIC 142
           HCD PIRN L F+D S+ + +++  KF + F + MPEFD VGSCNGLLCLSDSL+ND++ 
Sbjct: 80  HCDSPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSLY 139

Query: 143 IYNPFTRDYIELPK-SMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSS--FQRTR 199
           +YNPFT + +ELP+ S +Y DQE+VFGFGFH ++KEYKV+KIVY+R S SN++  ++   
Sbjct: 140 LYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRG 199

Query: 200 RVIYPRSDVQVYTVGSP------AWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPV 253
           R+ Y +S+VQ+ T+ S       +WRS GK  Y+FV+R SEALV GRLH+VTRPRR+ P 
Sbjct: 200 RIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPD 259

Query: 254 RGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVK 313
           R  VSFD+ DE+F+E+PKPDCGGLNR N+ L  L GCL   VYGNYGKL+IWVMK Y VK
Sbjct: 260 RKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVK 319

Query: 314 ESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSY 373
           ESW KE +IG Y+PKGLKQ+LDRP+ IWKN+ NG+VVRV+C+LE GEILLEYKSRVLV+Y
Sbjct: 320 ESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEYKSRVLVAY 379

Query: 374 DPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL 410
           DPK   F + +F G PNWF T+VH G+ +W DTP DL
Sbjct: 380 DPKLGKFKDLLFHGLPNWFHTVVHAGTLSWFDTPLDL 416

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2

 Score =  111 bits (278), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 176/395 (44%), Gaps = 60/395 (15%)

Query: 25  METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDP--LLANLHNTTSTSKAEKNPCL 82
           M T+P +IV  I LRLP  +LV+ + + +    L  DP  + ++LH    T         
Sbjct: 1   MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGD------- 53

Query: 83  ILHCDFPIRNQLCFIDFS-DNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAI 141
             H    +R  L       D+ D V     P +   P  +  GS NGL+ LS+S  +  +
Sbjct: 54  --HLMILLRGALRLYSVDLDSLDSVSDVEHPMKRGGPT-EVFGSSNGLIGLSNSPTD--L 108

Query: 142 CIYNPFTRDYIELP-KSMQYPDQE-----VVFGFGFHPVSKEYKVIKIVYYRKSCSNSSF 195
            ++NP TR    LP  S+  PD       V +G G+  VS +YKV+++V ++    +   
Sbjct: 109 AVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDE-- 166

Query: 196 QRTRRVIYPRSDVQVYTVGSPAWR------SKGKLAYQFV-----RRPSEALVKGRLHWV 244
                  +P  +V+V+++   +W+      S  +L + F      RR    L    LHWV
Sbjct: 167 ---LGCSFPY-EVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWV 222

Query: 245 TRPRRYSPV--RGIVSFDIADEQFREV--PKPDCGGLNRCNYHLTVLSGCLSVAVYGNYG 300
             PRR   +    IV FD+A E+F  V  P+    G       + VL GCL +    +  
Sbjct: 223 L-PRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQS 281

Query: 301 KLEIWVMKDYNVKESWAKELNIGAYIPKGLKQ-SLDRPLKIWKNSLNGRVVRVVCILEKG 359
            +++W+MK+YNV++SW K   +    PK +K  S  RPL   K              +K 
Sbjct: 282 YVDVWMMKEYNVRDSWTKVFTVQK--PKSVKSFSYMRPLVYSK--------------DKK 325

Query: 360 EILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQT 394
           ++LLE  +  LV +D + +  +    K  P+ +  
Sbjct: 326 KVLLELNNTKLVWFDLESKKMSTLRIKDCPSSYSA 360

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 157/370 (42%), Gaps = 82/370 (22%)

Query: 5   VKQKVNKRSKLEDDHQQATGMETL--PREIVLHILLRLPITSLVQFKFVCRAWRALAQDP 62
           + +   +  + EDD  +    E+L  P EI+  ILLRLP  S+ +F+ V + +  L+ DP
Sbjct: 11  IMEATKRERRREDDDGEKASPESLVLPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDP 70

Query: 63  LLANLH---------------------------NTTSTSKAEKNPCLILHCDFPIRNQLC 95
             A +H                           +  S     ++   + H ++P+++   
Sbjct: 71  GFAKIHLDLILRNESVRSLHRKLIVSSHNLYSLDFNSIGDGIRDLAAVEH-NYPLKDDPS 129

Query: 96  FID------FSDNQDKVRKFNMPFQAKMPE---FDAVGSCNGLLCLSDSLFNDAICIYNP 146
                      D+    R+  +   AK       + VGS NGL+C+S      A+ +YNP
Sbjct: 130 IFSEMIRNYVGDHLYDDRRVMLKLNAKSYRRNWVEIVGSSNGLVCISPG--EGAVFLYNP 187

Query: 147 FTRDYIELP-----KSMQYP-DQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRR 200
            T D   LP     KS++Y  D    +GFGF  ++ +YK++K+V   +            
Sbjct: 188 TTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLVATSEDIL--------- 238

Query: 201 VIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALV--KGRLHWVTRPRRYSPVRGIVS 258
                 D  VY++ + +WR    L Y+       + V   G +HWV    R++  R +V+
Sbjct: 239 ------DASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVFTESRHNQ-RVVVA 291

Query: 259 FDIADEQFREVPKP----DCGG------LNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMK 308
           FDI  E+FRE+P P    DC        +   N  L V++ C  V         +IWVM 
Sbjct: 292 FDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYDV-------HDDIWVMS 344

Query: 309 DYNVKESWAK 318
           +Y   +SW++
Sbjct: 345 EYGEAKSWSR 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1

 Score =  101 bits (252), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 147/306 (48%), Gaps = 29/306 (9%)

Query: 28  LPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLH----NTTSTSKAEKNP-CL 82
           LP E++  ILLRLP+ SL +FK VC +WR+L  + L A  H     T+  + + K+P  +
Sbjct: 14  LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGV 73

Query: 83  ILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAIC 142
           I    + +++      ++ +   V + +     +   +  VG+C+GL+C     ++ ++ 
Sbjct: 74  ITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGR-DYYQVVGTCHGLVCFHVD-YDKSLY 131

Query: 143 IYNPFTRDYIELPKS-MQYPDQE--VVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTR 199
           ++NP  +    L  S ++  D E  V +GFG+     +YKV+ ++           Q+  
Sbjct: 132 LWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALL-----------QQRH 180

Query: 200 RVIYPRSDVQVYTVGSPAWRSKGKLAYQFV---RRPSEALVKGRLHWVTRPRRYSPVRGI 256
           +V   + + ++Y+     WRS        V   +  S   + G L+        S    I
Sbjct: 181 QV---KIETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLN--WAATSSSSSWTI 235

Query: 257 VSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESW 316
           +S+D++ ++F+E+P P C G       L  L GCLS+  Y      ++WVMK++    SW
Sbjct: 236 ISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSW 295

Query: 317 AKELNI 322
           +K L+I
Sbjct: 296 SKLLSI 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 65/264 (24%)

Query: 28  LPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSK------------ 75
           LP E+ + IL+RL +  L +F+ VC+ WR L  DP     +   S +K            
Sbjct: 5   LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSPAKFVSFYDKNFYML 64

Query: 76  --AEKNPCLILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLS 133
               K+P +    DFP+                       Q+ + E   V  C+G LC+ 
Sbjct: 65  DVEGKHPVITNKLDFPLD----------------------QSMIDESTCVLHCDGTLCV- 101

Query: 134 DSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNS 193
            +L N  + ++NPF++ +  +P    Y D  ++ GFG+ PV  +YKV+  +         
Sbjct: 102 -TLKNHTLMVWNPFSKQFKIVPNPGIYQDSNIL-GFGYDPVHDDYKVVTFI--------- 150

Query: 194 SFQRTRRVIYPRSDV---QVYTVGSPAWRSKGKLAYQ--FVRRPSEALVKGRLHWVTRPR 248
                      R DV    V+   + +W    +++Y     R      +   L+W+    
Sbjct: 151 ----------DRLDVSTAHVFEFRTGSWGESLRISYPDWHYRDRRGTFLDQYLYWIA--Y 198

Query: 249 RYSPVRGIVSFDIADEQFREVPKP 272
           R S  R I+ F+++  ++R++P P
Sbjct: 199 RSSADRFILCFNLSTHEYRKLPLP 222

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 158/397 (39%), Gaps = 70/397 (17%)

Query: 18  DHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAE 77
           D+Q+       P E++L IL RLP+ SL +FK VC++W  L  D    +L N  S  +  
Sbjct: 2   DNQKGA---LFPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKEQ- 57

Query: 78  KNPCLILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLF 137
                +L  +    + L  +   DN   V + ++ F           S NGLLC S    
Sbjct: 58  -----LLVAEVSDSSSLICV---DNLRGVSELSLDFVRDRVRIRV--SSNGLLCCSSIPE 107

Query: 138 NDAICIYNPFTRDYIELPKSMQ------YPDQEVVF-GFGFHPVSKEYKVIKIVYYRKSC 190
                + NP TR+Y +LPKS +      YPD E    G        ++ V+   Y+R   
Sbjct: 108 KGVYYVCNPSTREYRKLPKSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAGYHR--- 164

Query: 191 SNSSFQRTRRVIYPRSDVQVYTVGSPAWRS----KGKLAYQFVRRPSEALVKGRLHWVTR 246
             S  QR            V+   S  WR       + ++  + +     V G LHW+  
Sbjct: 165 --SFGQRPDGSFI----CLVFDSESNKWRKFVSVLEECSFTHMSKNQVVFVNGMLHWLMS 218

Query: 247 PRRYSPVRGIVSFDIADEQFREVPKPD-----CGGLNRCNYHLTVLSGCLSVAVYGNYGK 301
              Y     I++ D+  + +R++  PD      GG NR   +L    G LSV    +   
Sbjct: 219 GLCY-----ILALDVEHDVWRKISLPDEIRIGNGGGNRV--YLLESDGFLSVIQLSDVW- 270

Query: 302 LEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEI 361
           ++IW M +Y   E+W+   +I     KGL                  V  +  I + GE 
Sbjct: 271 MKIWKMSEYET-ETWSVVDSISLRCIKGL------------------VPGIFPICQTGEY 311

Query: 362 LLEYKSRVLVSYDPKRRTFNE-FVFKGT---PNWFQT 394
           +     + ++ Y  + + + E F  KG+   P WF  
Sbjct: 312 VFLATHKQVLVYQRRSKLWKEMFSVKGSSSLPLWFSA 348

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 139/315 (44%), Gaps = 41/315 (13%)

Query: 25  METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLIL 84
           M   P +++  + LRL  T+LV+ + + +   +L   P   + H        E       
Sbjct: 1   MAECPTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGE------- 53

Query: 85  HCDFPIRN-QLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAICI 143
           H    +R  +L      D+ + V     P QA     +  GS NG++ L +S  +  + I
Sbjct: 54  HLMILLRGPRLLRTVELDSPENVSDIPHPLQAGGFT-EVFGSFNGVIGLCNSPVD--LAI 110

Query: 144 YNPFTRDYIELP-KSMQYPDQE-----VVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQR 197
           +NP TR    LP + + +P+++     V +G G+  V  ++KV++IV           + 
Sbjct: 111 FNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIV-------QCKLKE 163

Query: 198 TRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFV------------RRPSEALVKGRLHWVT 245
            ++      +V+V+++   +W+ +  L ++F             RR    +V   LHW+ 
Sbjct: 164 GKKKFPCPVEVKVFSLKKNSWK-RVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWIL 222

Query: 246 RPRRYSPV--RGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLE 303
            PRR   +    I+ +D+A +    +  P    +   N  + VL GC+ +  Y  Y  ++
Sbjct: 223 -PRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIED-NMDIGVLDGCVCLMCYDEYSHVD 280

Query: 304 IWVMKDYNVKESWAK 318
           +WV+K+Y   +SW K
Sbjct: 281 VWVLKEYEDYKSWTK 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTC3|FB179_ARATH Putative F-box protein At3g23260 OS=Arabidopsis thaliana GN=At3g23260 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 132/315 (41%), Gaps = 37/315 (11%)

Query: 27  TLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHC 86
           +LP E+   IL R+P   L + +   + W AL++    A  H+  +T    K P +I+  
Sbjct: 5   SLPVELQEEILSRVPAKYLARLRSTSKQWNALSKTGSFAKKHSANAT----KEPLIIMLK 60

Query: 87  DFPIRNQLCFIDFSDNQDKVRK---FNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAICI 143
           D   R  L  ++     + V +          K P    V  C+GLL L  S+  + + +
Sbjct: 61  D--SRVYLASVNLHGVHNNVAQSFELGSRLYLKDPHISNVFHCDGLLLLC-SIKENTLEV 117

Query: 144 YNPFTRDYIELPKSMQYPDQEVVFGFGFHPVS--KEYKVIKIVYYRKSCSNSSFQRTRRV 201
           +NP + +   +     Y  +   +  G+   S  K+YKV++++      S    Q   ++
Sbjct: 118 WNPCSGEAKLIKPRHSYYKESDFYALGYDNKSSCKKYKVLRVI------SQVHVQGDFKI 171

Query: 202 IYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDI 261
            Y     ++Y   + +WR  G      +R+     VKG  +WV R  RY P +  +SFD 
Sbjct: 172 EY-----EIYDFTNDSWRVHGATTELSIRQKHPVSVKGSTYWVVR-NRYFPYKYFLSFDF 225

Query: 262 ADEQFREVPKPDCGGLNRCNYHLTVLSGCLS--VAVYGNYG------KLEIWVMKDYNVK 313
           + E+F+ +  P         Y +T LS      + ++G Y        L +WV       
Sbjct: 226 STERFQSLSLP-----QPFPYLVTDLSVVREEQLCLFGYYNWSTTSEDLNVWVTTSLGSV 280

Query: 314 ESWAKELNIGAYIPK 328
            SW+K L I    P+
Sbjct: 281 VSWSKFLTIQIIKPR 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQL5|FB30_ARATH Putative F-box protein At1g32420 OS=Arabidopsis thaliana GN=At1g32420 PE=4 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 126/299 (42%), Gaps = 32/299 (10%)

Query: 21  QATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRAL--AQDPLLANLHNTTSTSKAEK 78
           + +G   +P ++ + IL +LP  SL++F+ V + W ++  ++   + ++   + T    +
Sbjct: 30  EKSGNVNIPLDLTVEILKKLPAKSLLRFQCVSKQWLSIISSRRDFIDSIVTRSLTQPPPR 89

Query: 79  NPCLILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFN 138
           +  LI H          FI  S       K ++  +A    +       GL+C   S   
Sbjct: 90  DIKLIFHHQVLYPGPHFFIFSSTYPQNTDKESLTTRASSYHY-----VRGLICCW-SHCP 143

Query: 139 DAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRT 198
             + IYNP TR Y  +P + +Y   E  F FG+ PV  +YKV+ +  Y            
Sbjct: 144 TTVDIYNPTTRQYYTVPDTNRYQYIETCF-FGYDPVENQYKVMVLPKYYME--------- 193

Query: 199 RRVIYPRSDVQVYTVGSP---AWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRG 255
                  S  QV+TVG P    WR    +   F+ +  +A+    + +      Y     
Sbjct: 194 ------ESPCQVFTVGDPIEKPWRDIQGIGVHFLLK--DAVCINGVIYYQATNEYGSTYF 245

Query: 256 IVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKE 314
           +VSFD+  E+F  V  P     + C   L    G L + +    G LEIWVM+D   K+
Sbjct: 246 LVSFDVRSEKFNHVKAPKILTDHPCT--LINYQGKLGLIMCCKKG-LEIWVMEDAEKKQ 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSQ2|FB55_ARATH F-box protein At1g52490 OS=Arabidopsis thaliana GN=At1g52490 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 141/324 (43%), Gaps = 52/324 (16%)

Query: 13  SKLEDDHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRAL--AQDPLLANLHNT 70
           SKL+D H        LP ++++ IL +LP  SL++F+ V + W  +   +   + ++   
Sbjct: 48  SKLKDVH--------LPLDLIVEILKKLPTKSLMRFRCVSKPWSFIISKRRDFVESIMAR 99

Query: 71  TSTSKAEKNPCLILH-CDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAV--GSCN 127
           +      K P  I H CD        F   S    +  K  +        ++A       
Sbjct: 100 SLRQPPHKLPVFIFHQCD-----PGTFFTVSSTFSQSTKPKVSIMPGRNHYNAFRYQYVR 154

Query: 128 GLLCLSDSLFNDAICIYNPFTRDYIELPK---SMQYPDQEVVFGFGFHPVSKEYKVIKIV 184
           G +C S S++ D + IYNP TR  + LPK    +  P +     FG+  V  EYKV+ +V
Sbjct: 155 GFICCSSSVY-DLVTIYNPTTRQCLPLPKIESMVLSPKRHKHCYFGYDHVMNEYKVLAMV 213

Query: 185 YYRKSCSNSSFQRTRRVIYPRSDVQVYTVG--SPAWRS-KGKLAYQFVRRPSEAL-VKGR 240
                  N S + T+          V+T+G   P WR  +G + Y+ +      + + G 
Sbjct: 214 -------NDSQELTQ-------TFHVFTLGRDCPQWRKIRGNIDYELISVSRAGVCIDGT 259

Query: 241 LHWVTRPRRYSPVRG---IVSFDIADEQFREVPKPDCGGLNRCN----YHLTVLSGCLSV 293
           +++V   R+ +   G   ++SFD+  E+F  V  P+     +C     ++     GC+S 
Sbjct: 260 IYYVAVRRKDNENYGELFMMSFDVKSERFYHVRTPETLWSPKCTERGLFNHQGKLGCIS- 318

Query: 294 AVYGNYGKLEIWVMKDYNVKESWA 317
               N   + +W+M++   K+ W+
Sbjct: 319 ---SNENNISMWIMENAE-KQEWS 338

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	410
224064862	408	f-box family protein [Populus trichocarp	0.985	0.990	0.665	1e-160
224129122	422	f-box family protein [Populus trichocarp	0.987	0.959	0.661	1e-157
225447272	409	PREDICTED: F-box protein At3g07870 [Viti	0.973	0.975	0.623	1e-143
297829344	415	F-box family protein [Arabidopsis lyrata	0.975	0.963	0.558	1e-133
18398079	417	F-box protein [Arabidopsis thaliana] gi|	0.929	0.913	0.576	1e-131
449445682	375	PREDICTED: F-box protein At3g07870-like	0.897	0.981	0.505	1e-106
255583020	263	conserved hypothetical protein [Ricinus	0.634	0.988	0.669	1e-103
255588135	383	conserved hypothetical protein [Ricinus	0.904	0.968	0.477	8e-94
255583018	410	conserved hypothetical protein [Ricinus	0.931	0.931	0.464	9e-82
255552822	401	conserved hypothetical protein [Ricinus	0.909	0.930	0.437	1e-79

>gi|224064862|ref|XP_002301588.1| f-box family protein [Populus trichocarpa] gi|222843314|gb|EEE80861.1| f-box family protein [Populus trichocarpa]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 275/413 (66%), Positives = 328/413 (79%), Gaps = 9/413 (2%)

Query: 1   MELDVKQKVNKR-SKLEDDHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALA 59
           M+LD ++   +R +KLEDD  Q TGME LPREI   IL RLPITSLV+FK VCRAWRA+A
Sbjct: 1   MDLDFERHSKRRKTKLEDD-PQTTGMELLPREIAQDILSRLPITSLVKFKCVCRAWRAMA 59

Query: 60  QDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFS---DNQDKVRKFNMPFQAK 116
            DP + NL+ + ST   E +PC+ILHCDFPIRN L F+DF+   + ++KV++   PF + 
Sbjct: 60  LDPEVVNLYLSCSTQ--ETDPCVILHCDFPIRNNLYFVDFAAHEEEKEKVKRIRAPFSSM 117

Query: 117 MPEFDAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSK 176
           MPEF+ VGSCNGLLCLSDSLFND++ IYNPFT  Y ELPKS+QYPDQEVVFGFGF+P + 
Sbjct: 118 MPEFEVVGSCNGLLCLSDSLFNDSLYIYNPFTGRYKELPKSLQYPDQEVVFGFGFNPKTN 177

Query: 177 EYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEAL 236
           EYKVI+IVYYR    +  + R+RR+IYP S VQ+ T+G P WRS GK++Y+ VRR SE L
Sbjct: 178 EYKVIRIVYYRNG--HGRYPRSRRIIYPLSQVQILTLGCPGWRSLGKVSYRLVRRASETL 235

Query: 237 VKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVY 296
           V GRLHWV+RP R  P R +VSFD+ DEQFREVPKPDCGGLNRC+YHL VL GCLSVAVY
Sbjct: 236 VNGRLHWVSRPCRNKPARRLVSFDLTDEQFREVPKPDCGGLNRCDYHLAVLRGCLSVAVY 295

Query: 297 GNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCIL 356
            NYG+LEIWVMK+YNVKESW KE NIGAY+PKGLKQ+L RPLKIWKN+ NGR VR +C+L
Sbjct: 296 CNYGRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNLVRPLKIWKNASNGRAVRALCVL 355

Query: 357 EKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHD 409
           + GEILLEYK+R LVSYDPK+  F +   +GTP WFQT+VH GS NWIDTP D
Sbjct: 356 KNGEILLEYKNRALVSYDPKKGKFKDIDLQGTPKWFQTVVHVGSLNWIDTPSD 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129122|ref|XP_002320506.1| f-box family protein [Populus trichocarpa] gi|222861279|gb|EEE98821.1| f-box family protein [Populus trichocarpa]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/413 (66%), Positives = 325/413 (78%), Gaps = 8/413 (1%)

Query: 1   MELDV-KQKVNKRSKLEDDHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALA 59
           M+LD  K +  +++K+E D  Q TGME LPREI   IL RLPITSLVQFK VCRAWRAL 
Sbjct: 1   MDLDCEKHRKRRKTKVEYD-PQTTGMELLPREIAHDILSRLPITSLVQFKCVCRAWRALV 59

Query: 60  QDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFS---DNQDKVRKFNMPFQAK 116
           QDP L +L+ + ST   + +PCLILHCDFPIRN L F+DF+   + ++KV++   PF + 
Sbjct: 60  QDPQLVDLYLSCSTQDTD-HPCLILHCDFPIRNNLYFVDFAAHEEEKEKVKRIPAPFSSM 118

Query: 117 MPEFDAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSK 176
           MPEF+ VGSCNGLLCLSDSL+ND++ IYNPFT  Y ELPKS+QYPDQEVV GFGF+P +K
Sbjct: 119 MPEFEVVGSCNGLLCLSDSLYNDSLYIYNPFTGCYKELPKSLQYPDQEVVSGFGFNPKTK 178

Query: 177 EYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEAL 236
           EYKVI+IVYYR    +  + R+RR+IYP S+VQ+ T+G P WRS GK++Y+ VRR S AL
Sbjct: 179 EYKVIRIVYYRNG--HGGYPRSRRIIYPLSEVQILTLGCPEWRSLGKVSYRLVRRASGAL 236

Query: 237 VKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVY 296
           V GRLHW++RP R  P R +VSFD+ DEQFREV KPDCGGLNRCNYHL VL GCLS AVY
Sbjct: 237 VNGRLHWISRPCRNKPARRLVSFDLTDEQFREVSKPDCGGLNRCNYHLVVLRGCLSAAVY 296

Query: 297 GNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCIL 356
            NYG+LEIWVMK+YNVKESW KE NIGAY+PKGLKQ+ DR LKIWKNS NGRVV  +C+L
Sbjct: 297 CNYGRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNQDRQLKIWKNSSNGRVVGALCVL 356

Query: 357 EKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHD 409
           + GEILLEYK+RVLVSYDPK   F +   +G PNWFQT+VH GS NWIDTP D
Sbjct: 357 KNGEILLEYKNRVLVSYDPKNGKFKDIELQGAPNWFQTVVHVGSLNWIDTPSD 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447272|ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera] gi|147785390|emb|CAN68678.1| hypothetical protein VITISV_041941 [Vitis vinifera]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 257/412 (62%), Positives = 322/412 (78%), Gaps = 13/412 (3%)

Query: 1   MELDVKQKVNKRSKLE---DDHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRA 57
           M+LD  +K  KR++ E    +  + + ME LPR+I+L IL RLP+TSLVQF+FVCR WR 
Sbjct: 1   MDLDF-EKPGKRARYEMGGGEGPRTSFMERLPRDIILDILSRLPVTSLVQFRFVCRGWRL 59

Query: 58  LAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSD---NQDKVRKFNMPFQ 114
           +AQD LLA+ H   +   A+ NPCLILHCD+PIRNQ+ F+D S    ++D VRK  +PF 
Sbjct: 60  MAQDSLLASKHLCRT---AQYNPCLILHCDYPIRNQISFVDISAESRDKDMVRKLTIPFW 116

Query: 115 AKMPEFDAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPV 174
           A MPEF+ VGSCNGLLCL+DSLF DA+ ++NPFTRD+ +LPKS+QYPDQEVVFGFG+HP+
Sbjct: 117 ASMPEFEVVGSCNGLLCLADSLFKDAVYVHNPFTRDFKQLPKSLQYPDQEVVFGFGYHPM 176

Query: 175 SKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSE 234
           ++ YKV+K+VYYR       F R RR+   +S+VQV T+GSP WRS GK++YQ  R PSE
Sbjct: 177 TEVYKVVKVVYYRNG--YGGFSRFRRITCSQSEVQVLTLGSPTWRSLGKVSYQLDRWPSE 234

Query: 235 ALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVA 294
           ALV GRLHWVTRPRRY   R IVSFD+ADEQFRE+PKPDCGGL+RCNYHL VL GCLS A
Sbjct: 235 ALVNGRLHWVTRPRRYV-TRFIVSFDLADEQFREIPKPDCGGLSRCNYHLLVLGGCLSAA 293

Query: 295 VYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVC 354
           V+ + GKLE+WVMK+Y+VKESW KE NIGA++PKGLKQ ++RP +IW+N+  GR VR++C
Sbjct: 294 VHRSNGKLEVWVMKEYDVKESWIKEFNIGAHLPKGLKQDVNRPHRIWRNAPKGRGVRLLC 353

Query: 355 ILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDT 406
           +L+ GEILLEYK RVLVSY+P+R  F +   KG PNWFQT VH GS +WID+
Sbjct: 354 LLKNGEILLEYKGRVLVSYNPERGKFKDLTLKGLPNWFQTFVHVGSLSWIDS 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829344|ref|XP_002882554.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297328394|gb|EFH58813.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/419 (55%), Positives = 307/419 (73%), Gaps = 19/419 (4%)

Query: 5   VKQKVNKRSKLEDD--HQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDP 62
             +K  K+ K+ DD       G+E+LP +I+  I  RLPI+S+ +  FVCR+WR++    
Sbjct: 2   ASEKSFKKRKITDDVDGGGGGGLESLPGDIIADIFSRLPISSIARLMFVCRSWRSILTQ- 60

Query: 63  LLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKVR--KFNMPFQAKMPEF 120
                H   S+S +   PCL+LHCD PIRN L F+D S+ + +++  KF + F++ MPEF
Sbjct: 61  -----HGRVSSSSSPTKPCLLLHCDSPIRNGLHFLDLSEEEKRIKTKKFTLRFESSMPEF 115

Query: 121 DAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPK-SMQYPDQEVVFGFGFHPVSKEYK 179
           D VGSCNGLLCLSDSL+ND++ +YNPFT + +ELP+ S +Y DQE+VFGFGFH ++K+YK
Sbjct: 116 DVVGSCNGLLCLSDSLYNDSLYLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKDYK 175

Query: 180 VIKIVYYR-KSCSNSSFQRTR-RVIYPRSDVQVYTVGSP------AWRSKGKLAYQFVRR 231
           V+KIVY+R  S SN+   R R R+ Y +S+VQ+ T+ S       +WRS GK  Y+F++R
Sbjct: 176 VLKIVYFRGSSSSNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFMKR 235

Query: 232 PSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCL 291
            SEALV GRLH+VTRPRR+ P R  VSFD+ DE+F+E+PKPDCGGLNR N+ L  L GCL
Sbjct: 236 SSEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCL 295

Query: 292 SVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVR 351
              VYGNYGKL+IWVM+ Y VKESW KE +IG Y+PKGLKQ+LDRP+ IWKN+ NG+VVR
Sbjct: 296 CAVVYGNYGKLDIWVMETYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVR 355

Query: 352 VVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL 410
           V+C+LE GEILLEYKSRVLV+YDPK   F + +F G PNWF T+VH G+ +W+DTP DL
Sbjct: 356 VLCLLENGEILLEYKSRVLVAYDPKLGKFKDLLFHGLPNWFHTVVHVGTLSWVDTPLDL 414

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398079|ref|NP_566322.1| F-box protein [Arabidopsis thaliana] gi|75265789|sp|Q9SFC7.1|FB135_ARATH RecName: Full=F-box protein At3g07870 gi|6648199|gb|AAF21197.1|AC013483_21 unknown protein [Arabidopsis thaliana] gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21 [Arabidopsis thaliana] gi|109134141|gb|ABG25068.1| At3g07870 [Arabidopsis thaliana] gi|332641092|gb|AEE74613.1| F-box protein [Arabidopsis thaliana]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/397 (57%), Positives = 298/397 (75%), Gaps = 16/397 (4%)

Query: 25  METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLIL 84
           +E+LP +I+  I  RLPI+S+ +  FVCR+WR++     L      +S+S +   PCL+L
Sbjct: 25  LESLPEDIIADIFSRLPISSIARLMFVCRSWRSV-----LTQHGRLSSSSSSPTKPCLLL 79

Query: 85  HCDFPIRNQLCFIDFSDNQDKVR--KFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAIC 142
           HCD PIRN L F+D S+ + +++  KF + F + MPEFD VGSCNGLLCLSDSL+ND++ 
Sbjct: 80  HCDSPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSLY 139

Query: 143 IYNPFTRDYIELPK-SMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSS--FQRTR 199
           +YNPFT + +ELP+ S +Y DQE+VFGFGFH ++KEYKV+KIVY+R S SN++  ++   
Sbjct: 140 LYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRG 199

Query: 200 RVIYPRSDVQVYTVGSP------AWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPV 253
           R+ Y +S+VQ+ T+ S       +WRS GK  Y+FV+R SEALV GRLH+VTRPRR+ P 
Sbjct: 200 RIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPD 259

Query: 254 RGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVK 313
           R  VSFD+ DE+F+E+PKPDCGGLNR N+ L  L GCL   VYGNYGKL+IWVMK Y VK
Sbjct: 260 RKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVK 319

Query: 314 ESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSY 373
           ESW KE +IG Y+PKGLKQ+LDRP+ IWKN+ NG+VVRV+C+LE GEILLEYKSRVLV+Y
Sbjct: 320 ESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEYKSRVLVAY 379

Query: 374 DPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL 410
           DPK   F + +F G PNWF T+VH G+ +W DTP DL
Sbjct: 380 DPKLGKFKDLLFHGLPNWFHTVVHAGTLSWFDTPLDL 416

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445682|ref|XP_004140601.1| PREDICTED: F-box protein At3g07870-like [Cucumis sativus] gi|449519392|ref|XP_004166719.1| PREDICTED: F-box protein At3g07870-like [Cucumis sativus]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/386 (50%), Positives = 261/386 (67%), Gaps = 18/386 (4%)

Query: 25  METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLIL 84
           M+ LP +++  IL RLPI+SL+QF  V R+ R LAQ   L +          +   CLI 
Sbjct: 1   MDNLPHDVLFQILSRLPISSLIQFHSVSRSCRLLAQYTQLFD-------PNHDHFRCLIF 53

Query: 85  HCDFPIRNQLCFIDF---SDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAI 141
           H DFPIRN L F+DF   + ++  V++   PF A MPE+D VGSCNG LCLSDSL+N+ +
Sbjct: 54  HSDFPIRNHLYFVDFPSLTQHKFSVKRIFTPFAATMPEYDVVGSCNGFLCLSDSLYNENL 113

Query: 142 CIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRV 201
            IYNPFTRDY+ELPKS  + + +VV+G GFHP +K  K++KIVY      +  F+R +R 
Sbjct: 114 FIYNPFTRDYLELPKSKDFSNPDVVYGIGFHPQTKRLKILKIVY------SKGFRRIQRR 167

Query: 202 IYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDI 261
            +  S+VQV+T+G+  WRS G++ +   +  S A + GRLHWV+ PRR+   R IVSFD+
Sbjct: 168 FH-HSEVQVFTLGTSNWRSIGRIFHHLAQGQSPAAINGRLHWVSLPRRHYVGRTIVSFDL 226

Query: 262 ADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELN 321
           A E+F ++PKPD G L+RCN+ L  L+ CLS  VY +YGK+EIWVM+ Y VKESW K  N
Sbjct: 227 ASEEFIDIPKPDYGSLSRCNFQLMNLNDCLSAVVYCSYGKMEIWVMEQYGVKESWVKSFN 286

Query: 322 IGAYIPKGLKQ-SLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTF 380
           IG+Y+PKGLKQ   +   K+ K  + GR+VRVVC+L+ GEILLEY++R LV ++P    F
Sbjct: 287 IGSYMPKGLKQEGTEMCFKVSKIVVKGRIVRVVCVLKSGEILLEYRNRALVVFNPSSGKF 346

Query: 381 NEFVFKGTPNWFQTIVHQGSFNWIDT 406
            +  F+G PNWFQTIVH GS N ID 
Sbjct: 347 KDVSFEGMPNWFQTIVHFGSLNRIDA 372

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583020|ref|XP_002532278.1| conserved hypothetical protein [Ricinus communis] gi|223528012|gb|EEF30093.1| conserved hypothetical protein [Ricinus communis]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/260 (66%), Positives = 212/260 (81%)

Query: 150 DYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQ 209
           ++IELPKS++YPDQEVVFGFGFHP ++EYKV+KIVYYR   S    + TRR  YP+S+VQ
Sbjct: 3   NHIELPKSLKYPDQEVVFGFGFHPKTQEYKVVKIVYYRNGHSGGYPRATRRQFYPQSEVQ 62

Query: 210 VYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREV 269
           + TVGS  WRS GK++YQ VRR SEALV GRLHWV+RPRRY+P R +VS D+ DEQFREV
Sbjct: 63  ILTVGSCEWRSLGKMSYQLVRRQSEALVNGRLHWVSRPRRYNPARRLVSLDLVDEQFREV 122

Query: 270 PKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKG 329
           PKPDCGGL+RCNYHL VL GCLS AVY NYG+LEIW MK+YNVKESW K+  +G ++PKG
Sbjct: 123 PKPDCGGLSRCNYHLVVLKGCLSAAVYCNYGRLEIWTMKEYNVKESWVKQYIVGTHMPKG 182

Query: 330 LKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTP 389
           LKQ+L+RP KIWKN+ NGRVVR++ +L+ GE+LLEYKSRVLV+YDP    F +   +G P
Sbjct: 183 LKQNLERPTKIWKNASNGRVVRILGLLKNGELLLEYKSRVLVTYDPNLGKFKDLTLQGLP 242

Query: 390 NWFQTIVHQGSFNWIDTPHD 409
            WFQ++VH GS NWID+P D
Sbjct: 243 KWFQSMVHVGSLNWIDSPTD 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588135|ref|XP_002534512.1| conserved hypothetical protein [Ricinus communis] gi|223525141|gb|EEF27869.1| conserved hypothetical protein [Ricinus communis]

 Score =  350 bits (898), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 183/383 (47%), Positives = 243/383 (63%), Gaps = 12/383 (3%)

Query: 23  TGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCL 82
           + +++LPREI+  IL R+   SL   KFVC++WR LAQDPLL +LH    + K E NPCL
Sbjct: 9   STIDSLPREIMADILSRVTTPSLFIIKFVCQSWRNLAQDPLLVDLH---FSHKIENNPCL 65

Query: 83  ILHCDFPIRNQL---CFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFND 139
           ILH D P +NQL   C    + +QD +    +P   K+ EFD VGSC G LCL DSL  +
Sbjct: 66  ILHSDHPTKNQLYALCLYPHNTSQDGM-VMKIPVPVKL-EFDVVGSCKGWLCLYDSLHKN 123

Query: 140 AICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTR 199
              +YNPFT   +ELP S    D   V GFGF PV K+YKV+K+ Y R++ +N++ +R  
Sbjct: 124 TFYMYNPFTNSCMELPISNFPSDVWTVLGFGFDPVRKKYKVLKVSYIRRT-NNTAGERYG 182

Query: 200 RVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSF 259
             +  RS+VQ+ TVGSP+WRS G+  Y  +  PS+  V GRLHWV  P RY P R ++SF
Sbjct: 183 LSL--RSEVQILTVGSPSWRSLGETPYYPIHSPSQVYVNGRLHWVNWPVRYRPGRKLISF 240

Query: 260 DIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKE 319
           D+ DE+FREVP P   G+   +Y L V+  CLS AVY NYG  E+WVMKDY +KESW KE
Sbjct: 241 DLEDEKFREVPLPGSDGIKWGDYMLVVIRDCLSAAVYRNYGSFEVWVMKDYGLKESWIKE 300

Query: 320 LNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRT 379
            +IG Y+PKGL+Q +D   ++ K        R++C+L+ GEILLEY  R LVSY+ +  T
Sbjct: 301 FSIGVYLPKGLEQKIDPSFRVSKFYRRA-FTRILCVLKNGEILLEYGRRALVSYEARFGT 359

Query: 380 FNEFVFKGTPNWFQTIVHQGSFN 402
           F +    G PNWF+   H G+ +
Sbjct: 360 FKDITVPGMPNWFEAFAHLGNID 382

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583018|ref|XP_002532277.1| conserved hypothetical protein [Ricinus communis] gi|223528011|gb|EEF30092.1| conserved hypothetical protein [Ricinus communis]

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 184/396 (46%), Positives = 241/396 (60%), Gaps = 14/396 (3%)

Query: 20  QQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKN 79
           +   G E+LP E+ L IL RLPIT L+  K VCR WR+L Q PLLA++H   S      +
Sbjct: 18  EHPPGTESLPCELALDILSRLPITHLINVKRVCRFWRSLVQHPLLASMH--FSRIANNND 75

Query: 80  PCLILHCDFPIRNQLCFIDFSDNQDK----VRKFNMPFQAKMPEFDAVGSCNGLLCLSDS 135
           PCL+L CD PI++ L  + FS   +     V +  +P    +P+F  +GSCNGLL L DS
Sbjct: 76  PCLLLLCDLPIKSHLYSLHFSALDETIIETVTRIPVPV---IPKFLVIGSCNGLLYLLDS 132

Query: 136 LFNDAICIYNPFTRDYIELPKSMQYPDQE-VVFGFGFHPVSKEYKVIKIVYYRKSCSNSS 194
           L   A  IYNPFT DY+ELP+  Q  +Q  V  GFGFH  +KEYKV+++VYYR +    +
Sbjct: 133 LQQRANYIYNPFTSDYLELPEPGQVLNQHRVATGFGFHSTTKEYKVVRVVYYRNNKEEGT 192

Query: 195 FQRTRRVIYPRSDVQVYTVG--SPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSP 252
             + RR   PRS+VQV TVG  S  WRSKG+ +YQ +  PS  +V GRLHW++   R   
Sbjct: 193 NFQKRRYSLPRSEVQVLTVGNGSLTWRSKGETSYQLLGNPSHVVVNGRLHWLSCRYRNQS 252

Query: 253 VRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNV 312
           +R ++SFD+ADEQFREVP P      R   HL  L GCLS  V G + +L IWVMK+Y V
Sbjct: 253 LRRLISFDLADEQFREVPCPVGASFGRHCSHLATLRGCLSGVVQG-FRRLYIWVMKEYGV 311

Query: 313 KESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVS 372
           KESW KE  IG  +P+ L+   ++ + + +  L     +V+C+L  GEILLE++   LV 
Sbjct: 312 KESWVKEFTIGVKLPRELEPYPNQSINLQEFHLPLSQTKVLCLLNNGEILLEFRCGTLVC 371

Query: 373 YDPKRRTFNEF-VFKGTPNWFQTIVHQGSFNWIDTP 407
           YD K   F E  +F+  P W   IVH GS NWIDTP
Sbjct: 372 YDTKSGAFKELIIFQDLPEWSNAIVHVGSLNWIDTP 407

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552822|ref|XP_002517454.1| conserved hypothetical protein [Ricinus communis] gi|223543465|gb|EEF44996.1| conserved hypothetical protein [Ricinus communis]

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 171/391 (43%), Positives = 231/391 (59%), Gaps = 18/391 (4%)

Query: 22  ATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPC 81
           +   E LP+EI   IL R PI SL++ K V R W    ++PLLAN+H   +   AE+N C
Sbjct: 16  SESFEKLPQEIYFDILSRQPIVSLLECKPVSRHWYTSVRNPLLANMHLNRA---AEQNLC 72

Query: 82  LILHCDFPIRNQLCFIDFSDNQD-KVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDA 140
           L+   D+P R++L  +     +  K++    PF++ + EF+ VGSCNGL+CL D   +D 
Sbjct: 73  LLFFSDWP-RSKLELVQVEHPEPRKLKTLKTPFESVLSEFEVVGSCNGLICLYDYFSDDP 131

Query: 141 ICIYNPFTRDYIELPKSMQYPDQ---EVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQR 197
           + IYNPFT +  ELP+    P      VVFGFGFHP  +EYKVIKIVYY++   N+ F  
Sbjct: 132 LYIYNPFTIECRELPRVEASPHSVICRVVFGFGFHPKMEEYKVIKIVYYKQG--NNDFSG 189

Query: 198 TRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPV--RG 255
                    +  V T  +P WR+ GK+ Y      SEALV  +LHW+T    +  V  R 
Sbjct: 190 GA------PEAFVLTANTPTWRNIGKIGYDLNGPTSEALVNEKLHWLTFCLVHEEVKYRE 243

Query: 256 IVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKES 315
           IVSFD+  EQF++VP+P CGGL++ NYHL  L GCLS  V  N G  EIW+MK YNVK S
Sbjct: 244 IVSFDLETEQFQDVPRPGCGGLDQINYHLVTLRGCLSAIVSCNEGSNEIWMMKIYNVKAS 303

Query: 316 WAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDP 375
           W KE+ +  Y+P+GL+ +   P +  KN   GR  RV+C L+ GE+LL Y  R +VSY+P
Sbjct: 304 WRKEMIVRNYVPQGLRLNTVPPARRRKNGYQGRRFRVLCDLKNGELLLLYGCRCIVSYNP 363

Query: 376 KRRTFNEFVFKGTPNWFQTIVHQGSFNWIDT 406
           +   F E  F+G P  F   VH GS   ++T
Sbjct: 364 ETGEFKELNFQGLPLEFLAFVHSGSLISVNT 394

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	410
TAIR|locus:2077452	417	AT3G07870 "AT3G07870" [Arabido	0.973	0.956	0.566	5.3e-127
TAIR|locus:2076196	364	AT3G23880 "AT3G23880" [Arabido	0.704	0.793	0.275	4.6e-25
TAIR|locus:2135615	413	CPR1 "AT4G12560" [Arabidopsis	0.809	0.803	0.289	4.7e-23
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.441	0.423	0.317	2.1e-21
TAIR|locus:2094947	360	AT3G16210 "AT3G16210" [Arabido	0.351	0.4	0.289	6.3e-15
TAIR|locus:2157834	359	AT5G49610 "AT5G49610" [Arabido	0.663	0.757	0.278	2e-14
TAIR|locus:2127465	402	AT4G22390 "AT4G22390" [Arabido	0.668	0.681	0.241	4e-14
TAIR|locus:2076151	402	AT3G23960 "AT3G23960" [Arabido	0.660	0.674	0.275	5.6e-13
TAIR|locus:2086243	362	AT3G23260 "AT3G23260" [Arabido	0.685	0.776	0.246	8.9e-13
TAIR|locus:2024437	382	AT1G09650 "AT1G09650" [Arabido	0.707	0.759	0.238	1.5e-11

TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)]

 Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
 Identities = 237/418 (56%), Positives = 307/418 (73%)

Query:     7 QKVNKRSKLEDDHQQAT---GMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPL 63
             +K  K+ K+ DD        G+E+LP +I+  I  RLPI+S+ +  FVCR+WR++     
Sbjct:     4 EKSFKKRKITDDVDGVGVGGGLESLPEDIIADIFSRLPISSIARLMFVCRSWRSV----- 58

Query:    64 LANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKVR--KFNMPFQAKMPEFD 121
             L      +S+S +   PCL+LHCD PIRN L F+D S+ + +++  KF + F + MPEFD
Sbjct:    59 LTQHGRLSSSSSSPTKPCLLLHCDSPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFD 118

Query:   122 AVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPK-SMQYPDQEVVFGFGFHPVSKEYKV 180
              VGSCNGLLCLSDSL+ND++ +YNPFT + +ELP+ S +Y DQE+VFGFGFH ++KEYKV
Sbjct:   119 VVGSCNGLLCLSDSLYNDSLYLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKV 178

Query:   181 IKIVYYRKSCSNSS-FQRTR-RVIYPRSDVQVYTVGSP------AWRSKGKLAYQFVRRP 232
             +KIVY+R S SN++   R R R+ Y +S+VQ+ T+ S       +WRS GK  Y+FV+R 
Sbjct:   179 LKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRS 238

Query:   233 SEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLS 292
             SEALV GRLH+VTRPRR+ P R  VSFD+ DE+F+E+PKPDCGGLNR N+ L  L GCL 
Sbjct:   239 SEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLC 298

Query:   293 VAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRV 352
               VYGNYGKL+IWVMK Y VKESW KE +IG Y+PKGLKQ+LDRP+ IWKN+ NG+VVRV
Sbjct:   299 AVVYGNYGKLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRV 358

Query:   353 VCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL 410
             +C+LE GEILLEYKSRVLV+YDPK   F + +F G PNWF T+VH G+ +W DTP DL
Sbjct:   359 LCLLENGEILLEYKSRVLVAYDPKLGKFKDLLFHGLPNWFHTVVHAGTLSWFDTPLDL 416

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 88/320 (27%), Positives = 152/320 (47%)

Query:    15 LEDDHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTT-ST 73
             +++  ++      LP E++  ILLRLP+ SL +FK VC +WR+L  + L A  H     T
Sbjct:     1 MDETTREMFSPHNLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILET 60

Query:    74 SKAE---KNPC-LILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEF-DAVGSCNG 128
             SKA    K+P  +I    + +++  C I    N   V       +    ++   VG+C+G
Sbjct:    61 SKATTSTKSPYGVITTSRYHLKS--CCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHG 118

Query:   129 LLCLSDSLFNDAICIYNPFTRDYIELPKS-MQYPDQE--VVFGFGFHPVSKEYKVIKIVY 185
             L+C     ++ ++ ++NP  +    L  S ++  D E  V +GFG+     +YKV+ ++ 
Sbjct:   119 LVCFHVD-YDKSLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALL- 176

Query:   186 YRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFV---RRPSEALVKGRLH 242
                       Q+  +V   + + ++Y+     WRS        V   +  S   + G L+
Sbjct:   177 ----------QQRHQV---KIETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLN 223

Query:   243 WVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKL 302
             W       S    I+S+D++ ++F+E+P P C G       L  L GCLS+  Y      
Sbjct:   224 WAATSSSSSWT--IISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANA 281

Query:   303 EIWVMKDYNVKESWAKELNI 322
             ++WVMK++    SW+K L+I
Sbjct:   282 DVWVMKEFGEVYSWSKLLSI 301

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 4.7e-23, P = 4.7e-23
 Identities = 113/390 (28%), Positives = 180/390 (46%)

Query:    25 METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDP--LLANLHNTTSTSKAEKNPCL 82
             M T+P +IV  I LRLP  +LV+ + + +    L  DP  + ++LH    T        L
Sbjct:     1 MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDH-----L 55

Query:    83 ILHCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAIC 142
             ++     +R  L  +D  D+ D V     P +   P  +  GS NGL+ LS+S  +  + 
Sbjct:    56 MILLRGALR--LYSVDL-DSLDSVSDVEHPMKRGGPT-EVFGSSNGLIGLSNSPTD--LA 109

Query:   143 IYNPFTRDYIELP-KSMQYPDQE-----VVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQ 196
             ++NP TR    LP  S+  PD       V +G G+  VS +YKV+++V + K  S     
Sbjct:   110 VFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQF-KIDSEDELG 168

Query:   197 RTRRVIYPRSDVQVYTVGSPAWR------SKGKLAYQFV-----RRPSEALVKGRLHWVT 245
              +    +P  +V+V+++   +W+      S  +L + F      RR    L    LHWV 
Sbjct:   169 CS----FPY-EVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVL 223

Query:   246 RPRRYSPVRG--IVSFDIADEQFREVPKPDC--GGLNRCNYHLTVLSGCLSVAVYGNYGK 301
              PRR   +    IV FD+A E+F  V  P+    G       + VL GCL +    +   
Sbjct:   224 -PRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSY 282

Query:   302 LEIWVMKDYNVKESWAKELNIGAYIPKGLKQ-SLDRPLKIWKNSLNGRVVRVVCILEKGE 360
             +++W+MK+YNV++SW K   +    PK +K  S  RPL   K              +K +
Sbjct:   283 VDVWMMKEYNVRDSWTKVFTVQK--PKSVKSFSYMRPLVYSK--------------DKKK 326

Query:   361 ILLEYKSRVLVSYDPKRRTFNEFVFKGTPN 390
             +LLE  +  LV +D + +  +    K  P+
Sbjct:   327 VLLELNNTKLVWFDLESKKMSTLRIKDCPS 356

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0042177 "negative regulation of protein catabolic process" evidence=IMP

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
 Identities = 69/217 (31%), Positives = 108/217 (49%)

Query:   121 DAVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELP-----KSMQYP-DQEVVFGFGFHPV 174
             + VGS NGL+C+S      A+ +YNP T D   LP     KS++Y  D    +GFGF  +
Sbjct:   164 EIVGSSNGLVCISPG--EGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGL 221

Query:   175 SKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFV--RRP 232
             + +YK++K+V             T   I    D  VY++ + +WR    L Y+       
Sbjct:   222 TDDYKLVKLV------------ATSEDIL---DASVYSLKADSWRRICNLNYEHNDGSYT 266

Query:   233 SEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPD----CGGLNRCNYHLTVLS 288
             S     G +HWV    R++  R +V+FDI  E+FRE+P PD    C      N+ +  L+
Sbjct:   267 SGVHFNGAIHWVFTESRHNQ-RVVVAFDIQTEEFREMPVPDEAEDCSH-RFSNFVVGSLN 324

Query:   289 G--CLSVAVYGNYGKLEIWVMKDYNVKESWAK-ELNI 322
             G  C+  + Y  +   +IWVM +Y   +SW++  +N+
Sbjct:   325 GRLCVVNSCYDVHD--DIWVMSEYGEAKSWSRIRINL 359

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
 Identities = 46/159 (28%), Positives = 77/159 (48%)

Query:    28 LPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCD 87
             LP E+ + IL+RL +  L +F+ VC+ WR L  DP     +   S +K            
Sbjct:     5 LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSPAK---------FVS 55

Query:    88 FPIRNQLCFIDFSDNQDKV-RKFNMPF-QAKMPEFDAVGSCNGLLCLSDSLFNDAICIYN 145
             F  +N    +D       +  K + P  Q+ + E   V  C+G LC++  L N  + ++N
Sbjct:    56 FYDKN-FYMLDVEGKHPVITNKLDFPLDQSMIDESTCVLHCDGTLCVT--LKNHTLMVWN 112

Query:   146 PFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIV 184
             PF++ +  +P    Y D  ++ GFG+ PV  +YKV+  +
Sbjct:   113 PFSKQFKIVPNPGIYQDSNIL-GFGYDPVHDDYKVVTFI 150

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157834 AT5G49610 "AT5G49610" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 89/319 (27%), Positives = 132/319 (41%)

Query:    29 PREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDF 88
             P E++L IL RLP+ SL +FK VC++W  L  D    +L N  S     K   L+     
Sbjct:    10 PDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSV----KEQLLVAEVS- 64

Query:    89 PIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLFNDAICIYNPFT 148
                + +C     DN   V + ++ F           S NGLLC S         + NP T
Sbjct:    65 DSSSLICV----DNLRGVSELSLDFVRDRVRIRV--SSNGLLCCSSIPEKGVYYVCNPST 118

Query:   149 RDYIELPKSMQ------YPDQEVVF-GFGFHPVSKEYKVIKIVYYRKSCSNSSF-QRTRR 200
             R+Y +LPKS +      YPD E    G        ++ V+   Y+R      SF QR   
Sbjct:   119 REYRKLPKSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAGYHR------SFGQRPDG 172

Query:   201 VIYPRSDVQVYTVGSPAWRS----KGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGI 256
                      V+   S  WR       + ++  + +     V G LHW+     Y     I
Sbjct:   173 SFI----CLVFDSESNKWRKFVSVLEECSFTHMSKNQVVFVNGMLHWLMSGLCY-----I 223

Query:   257 VSFDIADEQFREVPKPD-----CGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYN 311
             ++ D+  + +R++  PD      GG NR   +L    G LSV    +   ++IW M +Y 
Sbjct:   224 LALDVEHDVWRKISLPDEIRIGNGGGNRV--YLLESDGFLSVIQLSDVW-MKIWKMSEYE 280

Query:   312 VKESWAKELNIGAYIPKGL 330
               E+W+   +I     KGL
Sbjct:   281 T-ETWSVVDSISLRCIKGL 298

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 4.0e-14, P = 4.0e-14
 Identities = 76/315 (24%), Positives = 143/315 (45%)

Query:    25 METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLIL 84
             M   P +++  + LRL  T+LV+ + + +   +L   P   + H        E +  ++L
Sbjct:     1 MAECPTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGE-HLMILL 59

Query:    85 HCDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAV-GSCNGLLCLSDSLFNDAICI 143
                  +R     ++  D+ + V     P QA    F  V GS NG++ L +S  +  + I
Sbjct:    60 RGPRLLRT----VEL-DSPENVSDIPHPLQAG--GFTEVFGSFNGVIGLCNSPVD--LAI 110

Query:   144 YNPFTRDYIELP-KSMQYPDQEVV-----FGFGFHPVSKEYKVIKIVYYRKSCSNSSFQR 197
             +NP TR    LP + + +P++++      +G G+  V  ++KV++IV  +       F  
Sbjct:   111 FNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFP- 169

Query:   198 TRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFV------------RRPSEALVKGRLHWVT 245
                   P  +V+V+++   +W+ +  L ++F             RR    +V   LHW+ 
Sbjct:   170 -----CP-VEVKVFSLKKNSWK-RVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWIL 222

Query:   246 RPRRYSPV--RGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLE 303
              PRR   +    I+ +D+A +    +  P    +   N  + VL GC+ +  Y  Y  ++
Sbjct:   223 -PRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIED-NMDIGVLDGCVCLMCYDEYSHVD 280

Query:   304 IWVMKDYNVKESWAK 318
             +WV+K+Y   +SW K
Sbjct:   281 VWVLKEYEDYKSWTK 295

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076151 AT3G23960 "AT3G23960" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 88/319 (27%), Positives = 146/319 (45%)

Query:    28 LPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCD 87
             +P ++++ I L+LP+ S+   + V + W  +        L  T S+S+    P L+  C 
Sbjct:    31 IPIDLLIEIFLKLPVKSIATCRSVSKFWTYVLGRQDFTELFLTKSSSR----PQLLFAC- 85

Query:    88 FPIRNQLCFIDFSDNQDK-VRKFNMPFQA----KMPEFDAVGS-CNGLLCL-SDSLFN-- 138
                 N   +  FS NQ + + + + P  A     +P+   +G   NGL+ L  + +    
Sbjct:    86 ---ANDNGYFFFSSNQPQNLDENSSPIAAYPLTHVPKSRDLGPPINGLVSLRGERILKGR 142

Query:   139 ----DAICIYNPFTRDYIELPKS-MQYPDQEVVFGF-GFHPVSKEYKVIKIVYYRKSCSN 192
                 D   IYNP T + + LPK+ M       V  F G+ P+ K+YKV+ +        N
Sbjct:   143 IRPVDVSIIYNPSTGESLTLPKTNMTRKKIYTVTSFLGYDPIEKQYKVLSM--------N 194

Query:   193 SSFQRTRRVIYPRSD-VQVYTVGSP--AWRS-KGKLAYQFVRRPSEALVKGRLHWVTRPR 248
              S+++     +P+ +  QV T+G+   +WR  K  L YQ   + SE  + G L+++    
Sbjct:   195 MSYEK-----HPKCEGYQVLTLGTGKLSWRMIKCCLNYQHPLKNSEICINGVLYYLAMVN 249

Query:   249 RYS-PVRGIVSFDIADEQFR--EVPKPDCGGLNRCNYH---LTVLSGCLS-VAVYGNYGK 301
               S P R +V FDI  E F   EV +         NY+   L +L G  +   + G    
Sbjct:   250 GSSWPTRAVVCFDIRSEMFNFMEVYRELSYTTTLINYNNGKLGMLMGQEAHKTISGICRS 309

Query:   302 LEIWVMKDYNVKESWAKEL 320
              E+WV++D  VK  W+K +
Sbjct:   310 FELWVLED-TVKHEWSKHV 327

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2086243 AT3G23260 "AT3G23260" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 8.9e-13, P = 8.9e-13
 Identities = 77/312 (24%), Positives = 136/312 (43%)

Query:    27 TLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHC 86
             +LP E+   IL R+P   L + +   + W AL++    A  H+  +T    K P +I+  
Sbjct:     5 SLPVELQEEILSRVPAKYLARLRSTSKQWNALSKTGSFAKKHSANAT----KEPLIIMLK 60

Query:    87 DFPIRNQLCFIDFSDNQDKV-RKFNMPFQA--KMPEFDAVGSCNGLLCLSDSLFNDAICI 143
             D   R  L  ++     + V + F +  +   K P    V  C+GLL L  S+  + + +
Sbjct:    61 DS--RVYLASVNLHGVHNNVAQSFELGSRLYLKDPHISNVFHCDGLLLLC-SIKENTLEV 117

Query:   144 YNPFTRDY-IELPKSMQYPDQEVVFGFGFHPVS--KEYKVIKIVYYRKSCSNSSFQRTRR 200
             +NP + +  +  P+   Y + +  +  G+   S  K+YKV++++      S    Q   +
Sbjct:   118 WNPCSGEAKLIKPRHSYYKESDF-YALGYDNKSSCKKYKVLRVI------SQVHVQGDFK 170

Query:   201 VIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFD 260
             + Y     ++Y   + +WR  G      +R+     VKG  +WV R  RY P +  +SFD
Sbjct:   171 IEY-----EIYDFTNDSWRVHGATTELSIRQKHPVSVKGSTYWVVR-NRYFPYKYFLSFD 224

Query:   261 IADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGK----LEIWVMKDYNVKESW 316
              + E+F+ +  P        +  + V    L +  Y N+      L +WV        SW
Sbjct:   225 FSTERFQSLSLPQPFPYLVTDLSV-VREEQLCLFGYYNWSTTSEDLNVWVTTSLGSVVSW 283

Query:   317 AKELNIGAYIPK 328
             +K L I    P+
Sbjct:   284 SKFLTIQIIKPR 295

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024437 AT1G09650 "AT1G09650" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 75/314 (23%), Positives = 128/314 (40%)

Query:    20 QQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKN 79
             Q+   ME+LP E+V  IL RL    L++FK V + W++  + P       T        +
Sbjct:     5 QRCLMMESLPHEVVECILERLDADPLLRFKAVSKQWKSTIESPFFQRRQFTQRQQSGNPD 64

Query:    80 PCLILHCDFPIRNQL-CFIDFSDNQDKVRKFNMPFQAKMPEFDAVG----SCNGLLCLSD 134
               ++  C   I +++              K   P++ +  E         SC+GL+CL D
Sbjct:    65 VLMVSRCA-DINSEIEALTTLVLGSSSSVKIPTPWEEEEEEDKEYSVSQDSCDGLVCLFD 123

Query:   135 SLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSS 194
               F     ++NP TR Y  LP   Q     +  G GF+ +   Y+V ++ + +   + + 
Sbjct:   124 K-FKSGF-VFNPATRWYHPLPLC-QLQQLLIAIGDGFYDLG--YRVSRLGFGKDKLTGTY 178

Query:   195 -----FQRTRRVIYPRSDVQVYTVGSPAWRSKGKLA-YQFVRRPSEALVKGRLHWVTRPR 248
                  +      +   +  +V+   + AWR     A Y+ V  P+   V G LHW T   
Sbjct:   179 KPVWLYNSIEIGLENATTCEVFDFSTNAWRYVSPAAPYRIVGCPAPVCVDGSLHWFTECE 238

Query:   249 RYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMK 308
                    I+SFD+  E F+ V K     ++  +  +  L   L V+      ++ IW   
Sbjct:   239 ETK----ILSFDLHTETFQVVSKAPFANVDGFDIVMCNLDNRLCVSEMKLPNQV-IWSFN 293

Query:   309 DYNVKESWAKELNI 322
               N  ++W K  +I
Sbjct:   294 SGN--KTWHKMCSI 305

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0010200 "response to chitin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SFC7	FB135_ARATH	No assigned EC number	0.5768	0.9292	0.9136	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	410
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	9e-24
pfam12937	47	pfam12937, F-box-like, F-box-like	3e-08
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	3e-06
pfam00646	48	pfam00646, F-box, F-box domain	4e-06

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 98.2 bits (245), Expect = 9e-24
 Identities = 60/263 (22%), Positives = 108/263 (41%), Gaps = 42/263 (15%)

Query: 123 VGSCNGLLCLSDSLFNDAICIYNPFTRDY--IELPKSMQYPDQEVVFGFGFHPVSKEYKV 180
           V  C+GL+C S       + ++NP T     +  PKS +   +   +  G+ P+ K+YKV
Sbjct: 1   VVPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKV 57

Query: 181 IKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEAL-VKG 239
           +                 R     +S+ QVYT+GS +WR+  + +       S  + + G
Sbjct: 58  LCFSD-------------RSGNRNQSEHQVYTLGSNSWRTI-ECSPPHHPLKSRGVCING 103

Query: 240 RLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYH-LTVLSGCLSVAVYGN 298
            L+++    + +P   IVSFD++ E+F+E     CG  +  +Y  L    G L+V     
Sbjct: 104 VLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKK 163

Query: 299 YG-KLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILE 357
                ++WV+ D   K+ W+K   +              P+    + +      +    +
Sbjct: 164 DTNNFDLWVLNDAG-KQEWSKLFTV--------------PIPPLPDLV--DDNFLSGFTD 206

Query: 358 KGEILLEY---KSRVLVSYDPKR 377
           KGEI+L         +  Y+   
Sbjct: 207 KGEIVLCCEDENPFYIFYYNVGE 229

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 49.4 bits (119), Expect = 3e-08
 Identities = 17/40 (42%), Positives = 21/40 (52%)

Query: 25 METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64
          +  LP EI+L I   L    L++   VCR WR LA D  L
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSL 40

This is an F-box-like family. Length = 47

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 28 LPREIVLHILLRLPITSLVQFKFVCRAWRALAQD 61
          LP EI+  IL +L    L++ + V R WR+L   
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDS 34

Length = 41

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 43.3 bits (103), Expect = 4e-06
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 28 LPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64
          LP +++L IL RL    L++   V + WR+L     L
Sbjct: 6  LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 42

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	410
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	100.0
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.72
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.72
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.53
PHA02713	557	hypothetical protein; Provisional	99.01
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.86
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.86
PHA03098	534	kelch-like protein; Provisional	98.81
PHA02713	557	hypothetical protein; Provisional	98.79
PLN02153	341	epithiospecifier protein	98.76
PHA02790	480	Kelch-like protein; Provisional	98.74
PLN02193	470	nitrile-specifier protein	98.69
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.69
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.66
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.63
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.55
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.55
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.42
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.41
PHA02790	480	Kelch-like protein; Provisional	98.37
PLN02193	470	nitrile-specifier protein	98.33
PLN02153	341	epithiospecifier protein	98.28
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.26
PHA03098	534	kelch-like protein; Provisional	98.26
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.22
KOG4693	392	consensus Uncharacterized conserved protein, conta	97.67
KOG1230	521	consensus Protein containing repeated kelch motifs	97.38
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.32
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	96.82
KOG4693	392	consensus Uncharacterized conserved protein, conta	96.5
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	96.05
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.87
PF13964	50	Kelch_6: Kelch motif	95.33
KOG1230	521	consensus Protein containing repeated kelch motifs	94.28
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	93.85
PF13964	50	Kelch_6: Kelch motif	92.8
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.29
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	92.17
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	91.79
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	89.47
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	88.79
KOG4341	483	consensus F-box protein containing LRR [General fu	87.93
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	87.81
PLN02772	398	guanylate kinase	85.86
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	85.35
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	84.87
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	84.1
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	82.94
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	81.28
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	80.47
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	80.37

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=100.00  E-value=1.3e-35  Score=267.31  Aligned_cols=223  Identities=25%  Similarity=0.403  Sum_probs=164.7

Q ss_pred             EeccCceEEEeeccCCceEEEEcccccceeeCCCCCCC--CCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccc
Q 015251          123 VGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQY--PDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRR  200 (410)
Q Consensus       123 ~~s~~Gll~l~~~~~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~  200 (410)
                      ++|||||||+...   ..++||||+||+++.||+++..  .......+||||+.+++||||++.....    +.      
T Consensus         1 ~~sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~----~~------   67 (230)
T TIGR01640         1 VVPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG----NR------   67 (230)
T ss_pred             CcccceEEEEecC---CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC----CC------
Confidence            4799999999863   6899999999999999976531  1112368999999999999999965321    10      


Q ss_pred             cccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceee-EEcCCCCCCCCC
Q 015251          201 VIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFR-EVPKPDCGGLNR  279 (410)
Q Consensus       201 ~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~-~i~lP~~~~~~~  279 (410)
                         ....++||++++++||.+...+........+|++||++||+...........|++||+++|+|+ .|++|.......
T Consensus        68 ---~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~  144 (230)
T TIGR01640        68 ---NQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSV  144 (230)
T ss_pred             ---CCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccc
Confidence               1368999999999999987433222223349999999999997521111138999999999999 599997543222


Q ss_pred             cceEEEEeCCeEEEEEeCC-CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccC
Q 015251          280 CNYHLTVLSGCLSVAVYGN-YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEK  358 (410)
Q Consensus       280 ~~~~l~~~~G~L~~~~~~~-~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (410)
                      ....|++++|+||++.... ...++||+|++++ +..|++.++|++.....+               .. ...++++.++
T Consensus       145 ~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~-~~~W~k~~~i~~~~~~~~---------------~~-~~~~~~~~~~  207 (230)
T TIGR01640       145 DYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAG-KQEWSKLFTVPIPPLPDL---------------VD-DNFLSGFTDK  207 (230)
T ss_pred             cceEEEEECCEEEEEEecCCCCcEEEEEECCCC-CCceeEEEEEcCcchhhh---------------hh-heeEeEEeeC
Confidence            3467999999999998753 3569999999987 456999999986211100               01 1458889999


Q ss_pred             CcEEEEecC--CE-EEEEeCCCC
Q 015251          359 GEILLEYKS--RV-LVSYDPKRR  378 (410)
Q Consensus       359 g~il~~~~~--~~-l~~yd~~~~  378 (410)
                      |+|++....  +. ++.||++++
T Consensus       208 g~I~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       208 GEIVLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             CEEEEEeCCCCceEEEEEeccCC
Confidence            999997664  44 999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.72  E-value=1.8e-16  Score=129.01  Aligned_cols=115  Identities=26%  Similarity=0.465  Sum_probs=87.0

Q ss_pred             ceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEEEEeCCC---CeEEEEEEeeC
Q 015251          234 EALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNY---GKLEIWVMKDY  310 (410)
Q Consensus       234 ~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~---~~l~IW~l~~~  310 (410)
                      |+++||++||++.. .......|++||+.+|+|+.|++|...........|++++|+|+++.....   ..++||+|+|+
T Consensus         1 gicinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~   79 (129)
T PF08268_consen    1 GICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY   79 (129)
T ss_pred             CEEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence            58999999999976 334568999999999999999999322233456789999999999987543   35999999998


Q ss_pred             CCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEE
Q 015251          311 NVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLE  364 (410)
Q Consensus       311 ~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~  364 (410)
                      + +++|++++.+-....              ........+.+.++.++|||++.
T Consensus        80 ~-k~~Wsk~~~~lp~~~--------------~~~~~~~~~~~~g~~~~Geiv~~  118 (129)
T PF08268_consen   80 E-KQEWSKKHIVLPPSW--------------QHFVHDCDFSFVGVTDTGEIVFA  118 (129)
T ss_pred             c-cceEEEEEEECChHH--------------hcccCCcEEEEEEEcCCCEEEEE
Confidence            7 689998766433111              00111246788999999999887

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.72  E-value=4.8e-16  Score=132.01  Aligned_cols=152  Identities=28%  Similarity=0.412  Sum_probs=101.3

Q ss_pred             ceEECCeEEEEecCCCCCCCceEEEEEcCCcee-eEEcCCCCCCCCCcceEEEEe-CCeEEEEEeC-CCCeEEEEEEeeC
Q 015251          234 EALVKGRLHWVTRPRRYSPVRGIVSFDIADEQF-REVPKPDCGGLNRCNYHLTVL-SGCLSVAVYG-NYGKLEIWVMKDY  310 (410)
Q Consensus       234 ~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~-~~i~lP~~~~~~~~~~~l~~~-~G~L~~~~~~-~~~~l~IW~l~~~  310 (410)
                      +|++||++||++..........|++||+.+|+| +.+++|...........|.++ +|+||++... ....++||+|+++
T Consensus         1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~   80 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY   80 (164)
T ss_pred             CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence            589999999999874333333899999999999 889999765533445667555 6799999754 3456999999976


Q ss_pred             CC-CCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec-C------CEEEEEeCCCCcEEE
Q 015251          311 NV-KESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK-S------RVLVSYDPKRRTFNE  382 (410)
Q Consensus       311 ~~-~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~-~------~~l~~yd~~~~~~~~  382 (410)
                      +. +++|++.++|++........      ..        ....+.+.+++++++... .      ..++.|+ +++.+++
T Consensus        81 ~~~~~SWtK~~~i~~~~~~~~~~------~~--------~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~  145 (164)
T PF07734_consen   81 GYGKESWTKLFTIDLPPLPSLFF------HF--------RNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIE  145 (164)
T ss_pred             ccCcceEEEEEEEecCCCCCccc------cc--------ccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEE
Confidence            52 78999999999631111000      00        011122344556655421 1      3577888 7788888


Q ss_pred             EEEeCC-CCeEEEEEeecC
Q 015251          383 FVFKGT-PNWFQTIVHQGS  400 (410)
Q Consensus       383 v~~~~~-~~~~~~~~y~~s  400 (410)
                      +.+... ..+.....|+||
T Consensus       146 ~~~~~~~~~~~~~~~YvpS  164 (164)
T PF07734_consen  146 VDIEDKSSCWPSICNYVPS  164 (164)
T ss_pred             cccccCCCCCCCEEEECCC
Confidence            887433 245566789887

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.53  E-value=6.2e-12  Score=117.72  Aligned_cols=331  Identities=13%  Similarity=0.131  Sum_probs=164.5

Q ss_pred             CCCCCCCcHHHHHHHHccCC-cccccceecccHhhHhhhCChhhhhhhhccCCCCCCCCCeEEEeecCCCCceEEEEeCC
Q 015251           22 ATGMETLPREIVLHILLRLP-ITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFS  100 (410)
Q Consensus        22 ~~~~~~LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~  100 (410)
                      ++.|+.||+|||..|..||| ..+++|||+|||+||+.+....   +.     .....+|++++....|..+ +...+. 
T Consensus         1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~-   70 (373)
T PLN03215          1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KK-----NPFRTRPLILFNPINPSET-LTDDRS-   70 (373)
T ss_pred             CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---cc-----CCcccccccccCcccCCCC-cccccc-
Confidence            35799999999999999997 6699999999999999886421   00     0012235554432111111 100000 


Q ss_pred             CCccccccccCCCCCCCCCeEE---EeccCceEEEeecc-CCceEEEEcccccceeeCCCCCC----CC--CCceEEEE-
Q 015251          101 DNQDKVRKFNMPFQAKMPEFDA---VGSCNGLLCLSDSL-FNDAICIYNPFTRDYIELPKSMQ----YP--DQEVVFGF-  169 (410)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~---~~s~~Gll~l~~~~-~~~~~~V~NP~T~~~~~LP~~~~----~~--~~~~~~~l-  169 (410)
                          ..... ..+.....-+.+   .++.+|+|...... ..+.+.+.||+++....+|+...    +.  .......+ 
T Consensus        71 ----~~~~~-~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~  145 (373)
T PLN03215         71 ----YISRP-GAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL  145 (373)
T ss_pred             ----ccccc-cceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence                00000 000000000111   13568888775432 45789999999999888875211    00  00011111 


Q ss_pred             EEeCC---CCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEec
Q 015251          170 GFHPV---SKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTR  246 (410)
Q Consensus       170 ~~d~~---~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~  246 (410)
                      +.+..   ...|+-+.+.....+. +.++...  .......  +.-.+.++|..++.....   ...-|+.+|.+|-+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vl--~i~~~g~--l~~w~~~~Wt~l~~~~~~---~~DIi~~kGkfYAvD~  217 (373)
T PLN03215        146 DWAKRRETRPGYQRSALVKVKEGD-NHRDGVL--GIGRDGK--INYWDGNVLKALKQMGYH---FSDIIVHKGQTYALDS  217 (373)
T ss_pred             ecccccccccceeEEEEEEeecCC-CcceEEE--EEeecCc--EeeecCCeeeEccCCCce---eeEEEEECCEEEEEcC
Confidence            11111   1124212221121110 1011000  0000011  111235788888643332   3446899999999865


Q ss_pred             CCCCCCCceEEEEEcCCceeeEEcCCCC----CCCCCcceEEEEeCCeEEEEEeC----------------CCCeEEEEE
Q 015251          247 PRRYSPVRGIVSFDIADEQFREVPKPDC----GGLNRCNYHLTVLSGCLSVAVYG----------------NYGKLEIWV  306 (410)
Q Consensus       247 ~~~~~~~~~Il~fDl~~e~~~~i~lP~~----~~~~~~~~~l~~~~G~L~~~~~~----------------~~~~l~IW~  306 (410)
                      .      +.+.++|.+-+ ...+..+-.    .+.......|++..|.|.+|...                ....++|+.
T Consensus       218 ~------G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vfk  290 (373)
T PLN03215        218 I------GIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYK  290 (373)
T ss_pred             C------CeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEE
Confidence            4      67777774322 122211100    01111246799999999988641                013589999


Q ss_pred             EeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEE--E-ccCCcEEEEecCCEEEEEeCCCCcEEEE
Q 015251          307 MKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVC--I-LEKGEILLEYKSRVLVSYDPKRRTFNEF  383 (410)
Q Consensus       307 l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~g~il~~~~~~~l~~yd~~~~~~~~v  383 (410)
                      ++..  ...|++..+++-.   .+.  ++..          ..+.+.+  . .-.++-++...+.....||++.++...+
T Consensus       291 lD~~--~~~WveV~sLgd~---aLF--lG~~----------~s~sv~a~e~pG~k~NcIYFtdd~~~~v~~~~dg~~~~~  353 (373)
T PLN03215        291 FDDE--LAKWMEVKTLGDN---AFV--MATD----------TCFSVLAHEFYGCLPNSIYFTEDTMPKVFKLDNGNGSSI  353 (373)
T ss_pred             EcCC--CCcEEEecccCCe---EEE--EECC----------ccEEEecCCCCCccCCEEEEECCCcceEEECCCCCccce
Confidence            8753  4689998876531   110  0000          0111111  1 1124555555656678999999997766


Q ss_pred             EEe---CCCCeEEEEEeecCc
Q 015251          384 VFK---GTPNWFQTIVHQGSF  401 (410)
Q Consensus       384 ~~~---~~~~~~~~~~y~~sl  401 (410)
                      ...   ...++|+  ++..|+
T Consensus       354 ~~~~~~~~~~~~~--~~~~~~  372 (373)
T PLN03215        354 ETTISESSQSSFE--MFVPSF  372 (373)
T ss_pred             EeecCccccchhe--eecccc
Confidence            543   2234554  455554

>PHA02713 hypothetical protein; Provisional

Probab=99.01  E-value=3.5e-08  Score=99.96  Aligned_cols=219  Identities=9%  Similarity=0.084  Sum_probs=132.8

Q ss_pred             EeccCceEEEeeccC-----CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccc
Q 015251          123 VGSCNGLLCLSDSLF-----NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQR  197 (410)
Q Consensus       123 ~~s~~Gll~l~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~  197 (410)
                      ++..+|-|.+..+..     .+.++.+||.+++|..+|+.+..+....  +..++     -++..++....    ..   
T Consensus       299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~~~~-----g~IYviGG~~~----~~---  364 (557)
T PHA02713        299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LAVID-----DTIYAIGGQNG----TN---  364 (557)
T ss_pred             EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EEEEC-----CEEEEECCcCC----CC---
Confidence            455566665544321     2468899999999999998775432222  22232     36666644211    11   


Q ss_pred             ccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCC------------------CCCceEEEE
Q 015251          198 TRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRY------------------SPVRGIVSF  259 (410)
Q Consensus       198 ~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~------------------~~~~~Il~f  259 (410)
                            ....+++|++.+++|..++.+|..... ..++.++|.+|.+......                  .....+.+|
T Consensus       365 ------~~~sve~Ydp~~~~W~~~~~mp~~r~~-~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~Y  437 (557)
T PHA02713        365 ------VERTIECYTMGDDKWKMLPDMPIALSS-YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRY  437 (557)
T ss_pred             ------CCceEEEEECCCCeEEECCCCCccccc-ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEE
Confidence                  125799999999999999877765432 3456889999999865211                  013579999


Q ss_pred             EcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCC-C-CceeeEEEeccCcCcccccccCC
Q 015251          260 DIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNV-K-ESWAKELNIGAYIPKGLKQSLDR  336 (410)
Q Consensus       260 Dl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~-~-~~W~~~~~i~~~~p~~~~~~~~~  336 (410)
                      |+.+++|..++ +|...    ....+++++|+|++++..+......=..+-|.. . ..|+..-.+..  ++.       
T Consensus       438 DP~td~W~~v~~m~~~r----~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--~r~-------  504 (557)
T PHA02713        438 DTVNNIWETLPNFWTGT----IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--RLS-------  504 (557)
T ss_pred             CCCCCeEeecCCCCccc----ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--ccc-------
Confidence            99999999873 33221    234578999999999764321110001223332 3 47998654332  110       


Q ss_pred             cchhhcccCCCceeEEEEEccCCcEEEEecC---CEEEEEeCCCCcEEEEEEeCCC
Q 015251          337 PLKIWKNSLNGRVVRVVCILEKGEILLEYKS---RVLVSYDPKRRTFNEFVFKGTP  389 (410)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~---~~l~~yd~~~~~~~~v~~~~~~  389 (410)
                                  ...  ...-+|.|++..+.   ..+-.||+.|++|+.+.=+...
T Consensus       505 ------------~~~--~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~  546 (557)
T PHA02713        505 ------------ALH--TILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN  546 (557)
T ss_pred             ------------cce--eEEECCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence                        111  11225666665432   2477999999999988755444

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.86  E-value=1.2e-09  Score=71.75  Aligned_cols=41  Identities=39%  Similarity=0.724  Sum_probs=35.7

Q ss_pred             CCCCcHHHHHHHHccCCcccccceecccHhhHhhhCChhhh
Q 015251           25 METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLA   65 (410)
Q Consensus        25 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~   65 (410)
                      +..||+|++.+||++||++++.++++|||+|+.++.++.+-
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW   41 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW   41 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence            46899999999999999999999999999999999888443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.86  E-value=2.2e-07  Score=94.04  Aligned_cols=213  Identities=15%  Similarity=0.201  Sum_probs=135.8

Q ss_pred             EeccCceEEEeeccC-----CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccc
Q 015251          123 VGSCNGLLCLSDSLF-----NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQR  197 (410)
Q Consensus       123 ~~s~~Gll~l~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~  197 (410)
                      ++..+|.|....+..     .+....+||.+.+|..+|+....+....++.+       ..++.+++....    ..+  
T Consensus       328 ~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l-------~g~iYavGG~dg----~~~--  394 (571)
T KOG4441|consen  328 VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL-------DGKLYAVGGFDG----EKS--  394 (571)
T ss_pred             EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE-------CCEEEEEecccc----ccc--
Confidence            566677775554432     24789999999999999998765533222222       256666654321    111  


Q ss_pred             ccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCC-CCceEEEEEcCCceeeEE-cCCCCC
Q 015251          198 TRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYS-PVRGIVSFDIADEQFREV-PKPDCG  275 (410)
Q Consensus       198 ~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~Il~fDl~~e~~~~i-~lP~~~  275 (410)
                             ...+|.|+..+++|..++.++. .......+.++|.+|-+....... ....+.+||+.+++|+.+ +++...
T Consensus       395 -------l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R  466 (571)
T KOG4441|consen  395 -------LNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR  466 (571)
T ss_pred             -------cccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc
Confidence                   2579999999999999987766 333455678999999998864333 457899999999999987 444322


Q ss_pred             CCCCcceEEEEeCCeEEEEEeCCC-CeEEEEEEeeCC-CCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEE
Q 015251          276 GLNRCNYHLTVLSGCLSVAVYGNY-GKLEIWVMKDYN-VKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVV  353 (410)
Q Consensus       276 ~~~~~~~~l~~~~G~L~~~~~~~~-~~l~IW~l~~~~-~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (410)
                          ....+++++|+|+++...+. ..++-  .+-|. ....|+..-.+..  ++.                     .+-
T Consensus       467 ----~~~g~a~~~~~iYvvGG~~~~~~~~~--VE~ydp~~~~W~~v~~m~~--~rs---------------------~~g  517 (571)
T KOG4441|consen  467 ----SGFGVAVLNGKIYVVGGFDGTSALSS--VERYDPETNQWTMVAPMTS--PRS---------------------AVG  517 (571)
T ss_pred             ----ccceEEEECCEEEEECCccCCCccce--EEEEcCCCCceeEcccCcc--ccc---------------------ccc
Confidence                23458999999999986532 11221  22221 2467988743322  110                     011


Q ss_pred             EEccCCcEEEEec------CCEEEEEeCCCCcEEEEEE
Q 015251          354 CILEKGEILLEYK------SRVLVSYDPKRRTFNEFVF  385 (410)
Q Consensus       354 ~~~~~g~il~~~~------~~~l~~yd~~~~~~~~v~~  385 (410)
                      +..-++.+++.-+      -..+-.||+++++|+.+.-
T Consensus       518 ~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  518 VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             EEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            1222445544321      2468899999999998753

>PHA03098 kelch-like protein; Provisional

Probab=98.81  E-value=9.3e-07  Score=89.81  Aligned_cols=196  Identities=15%  Similarity=0.199  Sum_probs=121.4

Q ss_pred             ceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCce
Q 015251          139 DAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAW  218 (410)
Q Consensus       139 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~W  218 (410)
                      ..++.+||.|++|..+|+.+..+.....+  ..+     =++..++....    +.         ....+++|+..+++|
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~-----~~lyv~GG~~~----~~---------~~~~v~~yd~~~~~W  370 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFN-----NRIYVIGGIYN----SI---------SLNTVESWKPGESKW  370 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCcccccceEE--EEC-----CEEEEEeCCCC----CE---------ecceEEEEcCCCCce
Confidence            36889999999999999866433222222  222     24655543211    11         125789999999999


Q ss_pred             eecCCCCceeecCCcceEECCeEEEEecCCC-CCCCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEe
Q 015251          219 RSKGKLAYQFVRRPSEALVKGRLHWVTRPRR-YSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVY  296 (410)
Q Consensus       219 r~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~-~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~  296 (410)
                      +..+.+|... ....++.++|.+|-+..... ......+..||+.+++|..++ +|...    .....+..+|+|++++.
T Consensus       371 ~~~~~lp~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG  445 (534)
T PHA03098        371 REEPPLIFPR-YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH----YGGCAIYHDGKIYVIGG  445 (534)
T ss_pred             eeCCCcCcCC-ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc----cCceEEEECCEEEEECC
Confidence            9988776543 23445778999999987421 122467999999999999874 44221    13356778999988875


Q ss_pred             CCCC-----eEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec-----
Q 015251          297 GNYG-----KLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK-----  366 (410)
Q Consensus       297 ~~~~-----~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~-----  366 (410)
                      ....     .-.+|..+.  .+..|+..-.+..  |+.                   ... ++. -++.|++..+     
T Consensus       446 ~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~--~r~-------------------~~~-~~~-~~~~iyv~GG~~~~~  500 (534)
T PHA03098        446 ISYIDNIKVYNIVESYNP--VTNKWTELSSLNF--PRI-------------------NAS-LCI-FNNKIYVVGGDKYEY  500 (534)
T ss_pred             ccCCCCCcccceEEEecC--CCCceeeCCCCCc--ccc-------------------cce-EEE-ECCEEEEEcCCcCCc
Confidence            4211     123666553  2468987532211  110                   011 111 2566665432     


Q ss_pred             -CCEEEEEeCCCCcEEEEE
Q 015251          367 -SRVLVSYDPKRRTFNEFV  384 (410)
Q Consensus       367 -~~~l~~yd~~~~~~~~v~  384 (410)
                       ...+..||+++++|+.+.
T Consensus       501 ~~~~v~~yd~~~~~W~~~~  519 (534)
T PHA03098        501 YINEIEVYDDKTNTWTLFC  519 (534)
T ss_pred             ccceeEEEeCCCCEEEecC
Confidence             246899999999998775

>PHA02713 hypothetical protein; Provisional

Probab=98.79  E-value=5.9e-07  Score=91.09  Aligned_cols=134  Identities=14%  Similarity=0.097  Sum_probs=90.0

Q ss_pred             eEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCcee
Q 015251          140 AICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWR  219 (410)
Q Consensus       140 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~Wr  219 (410)
                      .+..+||.|++|..+++.+..+.....  ...+     -+|..++....   ...         ....++.|++.++.|.
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~--a~l~-----~~IYviGG~~~---~~~---------~~~~v~~Yd~~~n~W~  333 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYAS--AIVD-----NEIIIAGGYNF---NNP---------SLNKVYKINIENKIHV  333 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEE--EEEC-----CEEEEEcCCCC---CCC---------ccceEEEEECCCCeEe
Confidence            567899999999999887654321111  1122     25666543210   000         1257899999999999


Q ss_pred             ecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEE-cCCCCCCCCCcceEEEEeCCeEEEEEeC
Q 015251          220 SKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREV-PKPDCGGLNRCNYHLTVLSGCLSVAVYG  297 (410)
Q Consensus       220 ~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i-~lP~~~~~~~~~~~l~~~~G~L~~~~~~  297 (410)
                      .++.++.... ....+.++|.+|-+...........+.+||+.+++|..+ ++|...    .....++++|+|++++..
T Consensus       334 ~~~~m~~~R~-~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r----~~~~~~~~~g~IYviGG~  407 (557)
T PHA02713        334 ELPPMIKNRC-RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL----SSYGMCVLDQYIYIIGGR  407 (557)
T ss_pred             eCCCCcchhh-ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc----ccccEEEECCEEEEEeCC
Confidence            9887765433 345678999999998763222345799999999999987 444322    234577899999999764

>PLN02153 epithiospecifier protein

Probab=98.76  E-value=3.9e-06  Score=80.19  Aligned_cols=207  Identities=15%  Similarity=0.100  Sum_probs=118.4

Q ss_pred             ceEEEEcccccceeeCCCCCCCCCC--ceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCC
Q 015251          139 DAICIYNPFTRDYIELPKSMQYPDQ--EVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSP  216 (410)
Q Consensus       139 ~~~~V~NP~T~~~~~LP~~~~~~~~--~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~  216 (410)
                      +.++++||.+.+|..+|+....+..  .......++     =+++.++....   ...          ...+++|+..++
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~-----~~iyv~GG~~~---~~~----------~~~v~~yd~~t~  111 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG-----TKLYIFGGRDE---KRE----------FSDFYSYDTVKN  111 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC-----CEEEEECCCCC---CCc----------cCcEEEEECCCC
Confidence            4789999999999998864322211  111111222     25666643211   110          257899999999


Q ss_pred             ceeecCCC-----CceeecCCcceEECCeEEEEecCCCCC------CCceEEEEEcCCceeeEEcCCCCCCCCCcceEEE
Q 015251          217 AWRSKGKL-----AYQFVRRPSEALVKGRLHWVTRPRRYS------PVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLT  285 (410)
Q Consensus       217 ~Wr~~~~~-----p~~~~~~~~~v~~~G~lyw~~~~~~~~------~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~  285 (410)
                      +|..++.+     |... ....++..+|.+|.+.......      ....+.+||+.+.+|..++.+...........++
T Consensus       112 ~W~~~~~~~~~~~p~~R-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~  190 (341)
T PLN02153        112 EWTFLTKLDEEGGPEAR-TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA  190 (341)
T ss_pred             EEEEeccCCCCCCCCCc-eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE
Confidence            99987654     3222 2345678899999987652110      1246899999999999875432111112233567


Q ss_pred             EeCCeEEEEEeCC----------CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEE
Q 015251          286 VLSGCLSVAVYGN----------YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCI  355 (410)
Q Consensus       286 ~~~G~L~~~~~~~----------~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (410)
                      .++|+|+++....          ...-+||+++-.  ...|++.....- +|...                 .....  .
T Consensus       191 ~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~-~P~~r-----------------~~~~~--~  248 (341)
T PLN02153        191 VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETTGA-KPSAR-----------------SVFAH--A  248 (341)
T ss_pred             EECCeEEEEeccccccccCCccceecCceEEEEcC--CCcEEeccccCC-CCCCc-----------------ceeee--E
Confidence            8899998875421          011246666532  467998654321 12100                 01111  1


Q ss_pred             ccCCcEEEEecC---------------CEEEEEeCCCCcEEEEEEe
Q 015251          356 LEKGEILLEYKS---------------RVLVSYDPKRRTFNEFVFK  386 (410)
Q Consensus       356 ~~~g~il~~~~~---------------~~l~~yd~~~~~~~~v~~~  386 (410)
                      .-++.|++.-+.               ..++.||+++++|+.+...
T Consensus       249 ~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~  294 (341)
T PLN02153        249 VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGEC  294 (341)
T ss_pred             EECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCC
Confidence            113445443221               2589999999999988643

>PHA02790 Kelch-like protein; Provisional

Probab=98.74  E-value=2e-06  Score=85.93  Aligned_cols=184  Identities=13%  Similarity=0.112  Sum_probs=115.7

Q ss_pred             ceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCce
Q 015251          139 DAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAW  218 (410)
Q Consensus       139 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~W  218 (410)
                      .....+||.+++|..+|+++..+....  +...+     -++..++....                ...++.|+..+++|
T Consensus       287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~--~v~~~-----~~iYviGG~~~----------------~~sve~ydp~~n~W  343 (480)
T PHA02790        287 NNAIAVNYISNNWIPIPPMNSPRLYAS--GVPAN-----NKLYVVGGLPN----------------PTSVERWFHGDAAW  343 (480)
T ss_pred             CeEEEEECCCCEEEECCCCCchhhcce--EEEEC-----CEEEEECCcCC----------------CCceEEEECCCCeE
Confidence            357788999999999998765432211  11222     35666543211                14578999999999


Q ss_pred             eecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEEEEeCC
Q 015251          219 RSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGN  298 (410)
Q Consensus       219 r~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~~~~~~  298 (410)
                      ..++.+|.... ...++.++|.+|.+.....  ....+.+||+.+++|..++.++...   .....++++|+|++++.. 
T Consensus       344 ~~~~~l~~~r~-~~~~~~~~g~IYviGG~~~--~~~~ve~ydp~~~~W~~~~~m~~~r---~~~~~~~~~~~IYv~GG~-  416 (480)
T PHA02790        344 VNMPSLLKPRC-NPAVASINNVIYVIGGHSE--TDTTTEYLLPNHDQWQFGPSTYYPH---YKSCALVFGRRLFLVGRN-  416 (480)
T ss_pred             EECCCCCCCCc-ccEEEEECCEEEEecCcCC--CCccEEEEeCCCCEEEeCCCCCCcc---ccceEEEECCEEEEECCc-
Confidence            99987775443 3456789999999987521  2356889999999999885433221   234567899999998642 


Q ss_pred             CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec------CCEEEE
Q 015251          299 YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK------SRVLVS  372 (410)
Q Consensus       299 ~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~------~~~l~~  372 (410)
                         .++.-   .. ...|+..-.+..  |+.                   ...  +..-+|.|++.-+      ...+-.
T Consensus       417 ---~e~yd---p~-~~~W~~~~~m~~--~r~-------------------~~~--~~v~~~~IYviGG~~~~~~~~~ve~  466 (480)
T PHA02790        417 ---AEFYC---ES-SNTWTLIDDPIY--PRD-------------------NPE--LIIVDNKLLLIGGFYRGSYIDTIEV  466 (480)
T ss_pred             ---eEEec---CC-CCcEeEcCCCCC--Ccc-------------------ccE--EEEECCEEEEECCcCCCcccceEEE
Confidence               23321   22 468997543221  110                   111  1122466655432      135789


Q ss_pred             EeCCCCcEEE
Q 015251          373 YDPKRRTFNE  382 (410)
Q Consensus       373 yd~~~~~~~~  382 (410)
                      ||+++++|+.
T Consensus       467 Yd~~~~~W~~  476 (480)
T PHA02790        467 YNNRTYSWNI  476 (480)
T ss_pred             EECCCCeEEe
Confidence            9999999974

>PLN02193 nitrile-specifier protein

Probab=98.69  E-value=5.1e-06  Score=82.77  Aligned_cols=206  Identities=12%  Similarity=0.083  Sum_probs=121.4

Q ss_pred             ceEEEEcccccceeeCCCCCCCCC--CceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCC
Q 015251          139 DAICIYNPFTRDYIELPKSMQYPD--QEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSP  216 (410)
Q Consensus       139 ~~~~V~NP~T~~~~~LP~~~~~~~--~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~  216 (410)
                      ..++++||.+.+|..+|+....+.  .....+..++     =++..+.....    ..         ....+++|++.++
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~-----~~lYvfGG~~~----~~---------~~ndv~~yD~~t~  254 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG-----STLYVFGGRDA----SR---------QYNGFYSFDTTTN  254 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC-----CEEEEECCCCC----CC---------CCccEEEEECCCC
Confidence            358999999999998875322221  0111111222     24555532111    10         1257899999999


Q ss_pred             ceeecCCC---CceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEE
Q 015251          217 AWRSKGKL---AYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSV  293 (410)
Q Consensus       217 ~Wr~~~~~---p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~  293 (410)
                      +|+.+..+   |... .....+..++.||.+...........+.+||+.+.+|..++.|...........++.++|++++
T Consensus       255 ~W~~l~~~~~~P~~R-~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyv  333 (470)
T PLN02193        255 EWKLLTPVEEGPTPR-SFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWV  333 (470)
T ss_pred             EEEEcCcCCCCCCCc-cceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEE
Confidence            99998654   2222 2344567899999998653223345789999999999988654321112223457788999988


Q ss_pred             EEeCC-CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEecC-----
Q 015251          294 AVYGN-YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKS-----  367 (410)
Q Consensus       294 ~~~~~-~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~-----  367 (410)
                      +...+ ...-++|+++-.  +..|.+...+.. .|.. +                ....  +..-++.|++.-+.     
T Consensus       334 iGG~~g~~~~dv~~yD~~--t~~W~~~~~~g~-~P~~-R----------------~~~~--~~~~~~~iyv~GG~~~~~~  391 (470)
T PLN02193        334 VYGFNGCEVDDVHYYDPV--QDKWTQVETFGV-RPSE-R----------------SVFA--SAAVGKHIVIFGGEIAMDP  391 (470)
T ss_pred             EECCCCCccCceEEEECC--CCEEEEeccCCC-CCCC-c----------------ceeE--EEEECCEEEEECCccCCcc
Confidence            87532 223567887642  467988654321 1110 0                0111  11223555554221     


Q ss_pred             ----------CEEEEEeCCCCcEEEEEE
Q 015251          368 ----------RVLVSYDPKRRTFNEFVF  385 (410)
Q Consensus       368 ----------~~l~~yd~~~~~~~~v~~  385 (410)
                                ..+..||+.+++|+.+..
T Consensus       392 ~~~~~~~~~~ndv~~~D~~t~~W~~~~~  419 (470)
T PLN02193        392 LAHVGPGQLTDGTFALDTETLQWERLDK  419 (470)
T ss_pred             ccccCccceeccEEEEEcCcCEEEEccc
Confidence                      138999999999998874

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.69  E-value=3.2e-09  Score=70.10  Aligned_cols=44  Identities=32%  Similarity=0.551  Sum_probs=37.4

Q ss_pred             CCCCcHHHHHHHHccCCcccccceecccHhhHhhhCChhhhhhh
Q 015251           25 METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLH   68 (410)
Q Consensus        25 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~   68 (410)
                      +..||+|++.+||.+|+++++++++.|||+|++++.++.+-..+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            56799999999999999999999999999999999998876654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.66  E-value=8.8e-09  Score=65.46  Aligned_cols=39  Identities=36%  Similarity=0.578  Sum_probs=36.6

Q ss_pred             CcHHHHHHHHccCCcccccceecccHhhHhhhCChhhhh
Q 015251           28 LPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLAN   66 (410)
Q Consensus        28 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~   66 (410)
                      ||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999987744

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.63  E-value=3.2e-06  Score=85.69  Aligned_cols=199  Identities=17%  Similarity=0.212  Sum_probs=125.9

Q ss_pred             ceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCce
Q 015251          139 DAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAW  218 (410)
Q Consensus       139 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~W  218 (410)
                      ..+...||.+++|..+.+.+..+.   ..+.+.-.    -+|..++....    +.        .....++.|++++++|
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~---~~~~~~~~----~~lYv~GG~~~----~~--------~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRC---RVGVAVLN----GKLYVVGGYDS----GS--------DRLSSVERYDPRTNQW  361 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccc---cccEEEEC----CEEEEEccccC----CC--------cccceEEEecCCCCce
Confidence            467789999999999988664332   12222221    25666544321    11        0137899999999999


Q ss_pred             eecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEeC
Q 015251          219 RSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYG  297 (410)
Q Consensus       219 r~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~~  297 (410)
                      ..++.+...... ...+.++|.+|-+...........+-.||..+++|..+. ++.    .......++++|+|++++..
T Consensus       362 ~~~a~M~~~R~~-~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~----~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  362 TPVAPMNTKRSD-FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT----RRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             eccCCccCcccc-ceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc----ceeeeEEEEECCEEEEEcCc
Confidence            998766554432 345689999999998854445568999999999999884 543    12345688999999999864


Q ss_pred             CCCeEEEEEEeeCC-CCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec------CCEE
Q 015251          298 NYGKLEIWVMKDYN-VKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK------SRVL  370 (410)
Q Consensus       298 ~~~~l~IW~l~~~~-~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~------~~~l  370 (410)
                      ....-.+=..+-|. ....|+..-.+.-  ++.                   ... +++. +|.|+...+      ...+
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~-------------------~~g-~a~~-~~~iYvvGG~~~~~~~~~V  493 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNT--RRS-------------------GFG-VAVL-NGKIYVVGGFDGTSALSSV  493 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCccc--ccc-------------------cce-EEEE-CCEEEEECCccCCCccceE
Confidence            32211111222232 2468988664433  110                   111 2222 455555433      1247


Q ss_pred             EEEeCCCCcEEEEE
Q 015251          371 VSYDPKRRTFNEFV  384 (410)
Q Consensus       371 ~~yd~~~~~~~~v~  384 (410)
                      -.||+++++|+.+.
T Consensus       494 E~ydp~~~~W~~v~  507 (571)
T KOG4441|consen  494 ERYDPETNQWTMVA  507 (571)
T ss_pred             EEEcCCCCceeEcc
Confidence            88999999999986

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.55  E-value=2.9e-05  Score=74.31  Aligned_cols=180  Identities=13%  Similarity=0.059  Sum_probs=103.3

Q ss_pred             ccCceEEEeeccCCceEEEEcc--cccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccc
Q 015251          125 SCNGLLCLSDSLFNDAICIYNP--FTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVI  202 (410)
Q Consensus       125 s~~Gll~l~~~~~~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~  202 (410)
                      ..++-|.+..+.....++++++  .+++|..+|+.+..++... .....+     -+|..++.......++..       
T Consensus        15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~-~~~~~~-----~~iYv~GG~~~~~~~~~~-------   81 (346)
T TIGR03547        15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQA-VAAAID-----GKLYVFGGIGKANSEGSP-------   81 (346)
T ss_pred             EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccc-eEEEEC-----CEEEEEeCCCCCCCCCcc-------
Confidence            4456665544333456778774  7889999998663222111 111222     256666543210000000       


Q ss_pred             cCCceEEEEEeCCCceeecCC-CCceeecCCcce-EECCeEEEEecCCCCC-----------------------------
Q 015251          203 YPRSDVQVYTVGSPAWRSKGK-LAYQFVRRPSEA-LVKGRLHWVTRPRRYS-----------------------------  251 (410)
Q Consensus       203 ~~~~~~~Vyss~t~~Wr~~~~-~p~~~~~~~~~v-~~~G~lyw~~~~~~~~-----------------------------  251 (410)
                      .....++.|+..+++|+.+.. +|... ....++ .++|.||.+.......                             
T Consensus        82 ~~~~~v~~Yd~~~~~W~~~~~~~p~~~-~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T TIGR03547        82 QVFDDVYRYDPKKNSWQKLDTRSPVGL-LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQP  160 (346)
T ss_pred             eecccEEEEECCCCEEecCCCCCCCcc-cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCC
Confidence            012578999999999999863 23322 112223 5799999987642100                             


Q ss_pred             -----CCceEEEEEcCCceeeEE-cCCCCCCCCCcceEEEEeCCeEEEEEeCC---CCeEEEEEEeeCCCCCceeeEEE
Q 015251          252 -----PVRGIVSFDIADEQFREV-PKPDCGGLNRCNYHLTVLSGCLSVAVYGN---YGKLEIWVMKDYNVKESWAKELN  321 (410)
Q Consensus       252 -----~~~~Il~fDl~~e~~~~i-~lP~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~l~IW~l~~~~~~~~W~~~~~  321 (410)
                           ....+.+||+.+++|..+ ++|...   .....++.++|+|+++....   ....++|..+-...+..|...-.
T Consensus       161 ~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~  236 (346)
T TIGR03547       161 PEDYFWNKNVLSYDPSTNQWRNLGENPFLG---TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP  236 (346)
T ss_pred             hhHcCccceEEEEECCCCceeECccCCCCc---CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence                 025799999999999988 444211   12345778899999987532   23356776652122457987654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.55  E-value=4.2e-05  Score=72.51  Aligned_cols=155  Identities=17%  Similarity=0.122  Sum_probs=94.6

Q ss_pred             eEEEE-ccccc-ceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCc
Q 015251          140 AICIY-NPFTR-DYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPA  217 (410)
Q Consensus       140 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~  217 (410)
                      .++++ +|..+ +|..+++.+..+.. . .+..++     =+++.++....    ..         ....++.|+..+++
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~r~~-~-~~~~~~-----~~lyviGG~~~----~~---------~~~~v~~~d~~~~~   99 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYEAAY-G-ASVSVE-----NGIYYIGGSNS----SE---------RFSSVYRITLDESK   99 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCccccc-e-EEEEEC-----CEEEEEcCCCC----CC---------CceeEEEEEEcCCc
Confidence            46666 45533 78888875543321 1 122222     24555543211    11         02578899999998


Q ss_pred             e----eecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEE
Q 015251          218 W----RSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLS  292 (410)
Q Consensus       218 W----r~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~  292 (410)
                      |    +.++.+|.... ...++.++|.+|.+...........+.+||+.+++|..++ +|...   .....++.++|+|+
T Consensus       100 w~~~~~~~~~lp~~~~-~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~---r~~~~~~~~~~~iY  175 (323)
T TIGR03548       100 EELICETIGNLPFTFE-NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP---RVQPVCVKLQNELY  175 (323)
T ss_pred             eeeeeeEcCCCCcCcc-CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC---CCcceEEEECCEEE
Confidence            8    56666665433 3456788999999987532233468999999999999884 55321   12335678899999


Q ss_pred             EEEeCC-CCeEEEEEEeeCCCCCceeeEE
Q 015251          293 VAVYGN-YGKLEIWVMKDYNVKESWAKEL  320 (410)
Q Consensus       293 ~~~~~~-~~~l~IW~l~~~~~~~~W~~~~  320 (410)
                      ++.... ....++|..+-.  +..|....
T Consensus       176 v~GG~~~~~~~~~~~yd~~--~~~W~~~~  202 (323)
T TIGR03548       176 VFGGGSNIAYTDGYKYSPK--KNQWQKVA  202 (323)
T ss_pred             EEcCCCCccccceEEEecC--CCeeEECC
Confidence            987643 223466766532  46798754

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.42  E-value=0.00011  Score=71.26  Aligned_cols=183  Identities=11%  Similarity=0.040  Sum_probs=104.5

Q ss_pred             EeccCceEEEeeccCCceEEEEccc--ccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccc
Q 015251          123 VGSCNGLLCLSDSLFNDAICIYNPF--TRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRR  200 (410)
Q Consensus       123 ~~s~~Gll~l~~~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~  200 (410)
                      .+..++-|.+..+.....++++++.  +++|..+|+.+..+.... .....+     =++..++.......++...    
T Consensus        34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~-~~v~~~-----~~IYV~GG~~~~~~~~~~~----  103 (376)
T PRK14131         34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQA-VAAFID-----GKLYVFGGIGKTNSEGSPQ----  103 (376)
T ss_pred             EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccc-eEEEEC-----CEEEEEcCCCCCCCCCcee----
Confidence            3445666655433234567788775  578999987553222111 111222     2455554321100000000    


Q ss_pred             cccCCceEEEEEeCCCceeecCCC-CceeecCCcceE-ECCeEEEEecCCCC----------------------------
Q 015251          201 VIYPRSDVQVYTVGSPAWRSKGKL-AYQFVRRPSEAL-VKGRLHWVTRPRRY----------------------------  250 (410)
Q Consensus       201 ~~~~~~~~~Vyss~t~~Wr~~~~~-p~~~~~~~~~v~-~~G~lyw~~~~~~~----------------------------  250 (410)
                         ....+++|+..+++|+.+... |.... ...++. .+|.||.+......                            
T Consensus       104 ---~~~~v~~YD~~~n~W~~~~~~~p~~~~-~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~  179 (376)
T PRK14131        104 ---VFDDVYKYDPKTNSWQKLDTRSPVGLA-GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD  179 (376)
T ss_pred             ---EcccEEEEeCCCCEEEeCCCCCCCccc-ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence               025799999999999998742 33221 222334 79999999765210                            


Q ss_pred             ------CCCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEeCC---CCeEEEEEEeeCCCCCceeeEE
Q 015251          251 ------SPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYGN---YGKLEIWVMKDYNVKESWAKEL  320 (410)
Q Consensus       251 ------~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~l~IW~l~~~~~~~~W~~~~  320 (410)
                            .....+.+||+.+++|..+. +|...   .....++..+++|+++....   ....++|..+-...+..|.+..
T Consensus       180 ~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~---~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~  256 (376)
T PRK14131        180 KKPEDYFFNKEVLSYDPSTNQWKNAGESPFLG---TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP  256 (376)
T ss_pred             CChhhcCcCceEEEEECCCCeeeECCcCCCCC---CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC
Confidence                  01257999999999999874 44211   12345777899999987531   2456777765222256898766


Q ss_pred             Ee
Q 015251          321 NI  322 (410)
Q Consensus       321 ~i  322 (410)
                      .+
T Consensus       257 ~~  258 (376)
T PRK14131        257 DL  258 (376)
T ss_pred             CC
Confidence            43

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.41  E-value=0.00032  Score=67.97  Aligned_cols=92  Identities=13%  Similarity=0.160  Sum_probs=59.4

Q ss_pred             ceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCC-CCCCc--eEEEEEcCCceeeEE-cCCCCCC-C-C-
Q 015251          206 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRR-YSPVR--GIVSFDIADEQFREV-PKPDCGG-L-N-  278 (410)
Q Consensus       206 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~-~~~~~--~Il~fDl~~e~~~~i-~lP~~~~-~-~-  278 (410)
                      ..+++|+..+++|..++.+|.........+.+++.||.+..... .....  ....||.++.+|..+ ++|.... . . 
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~  268 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE  268 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence            47899999999999988776533333455778999999986421 11122  345667788999877 4553221 0 0 


Q ss_pred             -CcceEEEEeCCeEEEEEeC
Q 015251          279 -RCNYHLTVLSGCLSVAVYG  297 (410)
Q Consensus       279 -~~~~~l~~~~G~L~~~~~~  297 (410)
                       ......+.++|+|+++...
T Consensus       269 ~~~~~~a~~~~~~iyv~GG~  288 (376)
T PRK14131        269 GVAGAFAGYSNGVLLVAGGA  288 (376)
T ss_pred             ccceEeceeECCEEEEeecc
Confidence             0112246789999988753

>PHA02790 Kelch-like protein; Provisional

Probab=98.37  E-value=2.4e-05  Score=78.16  Aligned_cols=141  Identities=11%  Similarity=0.061  Sum_probs=94.9

Q ss_pred             EeccCceEEEeecc-CCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccccccc
Q 015251          123 VGSCNGLLCLSDSL-FNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRV  201 (410)
Q Consensus       123 ~~s~~Gll~l~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~  201 (410)
                      .+..+|-|.+..+. .......+||.+.+|..+|+.+..+..  ..+..++     -++..++....    .        
T Consensus       314 ~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~--~~~~~~~-----g~IYviGG~~~----~--------  374 (480)
T PHA02790        314 GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN--PAVASIN-----NVIYVIGGHSE----T--------  374 (480)
T ss_pred             EEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc--cEEEEEC-----CEEEEecCcCC----C--------
Confidence            45577877554432 224577889999999999997754422  1222333     35666643211    0        


Q ss_pred             ccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcc
Q 015251          202 IYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCN  281 (410)
Q Consensus       202 ~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~  281 (410)
                         ...+++|++++++|..++.++.... ...++.++|.+|.+..        ...+||+.+++|..++..+..   ...
T Consensus       375 ---~~~ve~ydp~~~~W~~~~~m~~~r~-~~~~~~~~~~IYv~GG--------~~e~ydp~~~~W~~~~~m~~~---r~~  439 (480)
T PHA02790        375 ---DTTTEYLLPNHDQWQFGPSTYYPHY-KSCALVFGRRLFLVGR--------NAEFYCESSNTWTLIDDPIYP---RDN  439 (480)
T ss_pred             ---CccEEEEeCCCCEEEeCCCCCCccc-cceEEEECCEEEEECC--------ceEEecCCCCcEeEcCCCCCC---ccc
Confidence               1468999999999999887665443 2456789999998873        367899999999988432211   224


Q ss_pred             eEEEEeCCeEEEEEeC
Q 015251          282 YHLTVLSGCLSVAVYG  297 (410)
Q Consensus       282 ~~l~~~~G~L~~~~~~  297 (410)
                      ..+++++|+|++++..
T Consensus       440 ~~~~v~~~~IYviGG~  455 (480)
T PHA02790        440 PELIIVDNKLLLIGGF  455 (480)
T ss_pred             cEEEEECCEEEEECCc
Confidence            4688999999999864

>PLN02193 nitrile-specifier protein

Probab=98.33  E-value=0.00012  Score=73.00  Aligned_cols=159  Identities=11%  Similarity=0.063  Sum_probs=93.1

Q ss_pred             ceEEEEEeCCCceeecCC---CCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcce
Q 015251          206 SDVQVYTVGSPAWRSKGK---LAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNY  282 (410)
Q Consensus       206 ~~~~Vyss~t~~Wr~~~~---~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~  282 (410)
                      ..+++|+..+++|..++.   .|.........+.+++.||.+...........+.+||+.+.+|..++............
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h  272 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH  272 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccce
Confidence            468999999999997653   23211123345788999999886532223467999999999999874311000111234


Q ss_pred             EEEEeCCeEEEEEeCCC--CeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCc
Q 015251          283 HLTVLSGCLSVAVYGNY--GKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGE  360 (410)
Q Consensus       283 ~l~~~~G~L~~~~~~~~--~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  360 (410)
                      .++..+++|+++.....  ..-++|..+-.  ...|........ +|..               +.  .. .+.+ -+++
T Consensus       273 ~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~~~-~~~~---------------R~--~~-~~~~-~~gk  330 (470)
T PLN02193        273 SMAADEENVYVFGGVSATARLKTLDSYNIV--DKKWFHCSTPGD-SFSI---------------RG--GA-GLEV-VQGK  330 (470)
T ss_pred             EEEEECCEEEEECCCCCCCCcceEEEEECC--CCEEEeCCCCCC-CCCC---------------CC--Cc-EEEE-ECCc
Confidence            56778999988875421  22356665532  467986432110 1100               00  01 1111 2455


Q ss_pred             EEEEec-----CCEEEEEeCCCCcEEEEEEe
Q 015251          361 ILLEYK-----SRVLVSYDPKRRTFNEFVFK  386 (410)
Q Consensus       361 il~~~~-----~~~l~~yd~~~~~~~~v~~~  386 (410)
                      +++..+     ...+..||+++++|+.+...
T Consensus       331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~  361 (470)
T PLN02193        331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETF  361 (470)
T ss_pred             EEEEECCCCCccCceEEEECCCCEEEEeccC
Confidence            554432     14589999999999988643

>PLN02153 epithiospecifier protein

Probab=98.28  E-value=0.00019  Score=68.52  Aligned_cols=112  Identities=13%  Similarity=0.056  Sum_probs=70.9

Q ss_pred             ceEEEEEeCCCceeecCCCC---ceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCC-CCC-CCCCc
Q 015251          206 SDVQVYTVGSPAWRSKGKLA---YQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKP-DCG-GLNRC  280 (410)
Q Consensus       206 ~~~~Vyss~t~~Wr~~~~~p---~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP-~~~-~~~~~  280 (410)
                      ..+++|+..+++|..+..++   .........+.+++.||.+...........+.+||+.+.+|..++-. ... .....
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~  129 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART  129 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence            47999999999999876432   21111234578899999998753323335799999999999987421 100 00112


Q ss_pred             ceEEEEeCCeEEEEEeCCCC--------eEEEEEEeeCCCCCceeeE
Q 015251          281 NYHLTVLSGCLSVAVYGNYG--------KLEIWVMKDYNVKESWAKE  319 (410)
Q Consensus       281 ~~~l~~~~G~L~~~~~~~~~--------~l~IW~l~~~~~~~~W~~~  319 (410)
                      ....+..+++|+++......        .-+||+.+-.  +..|...
T Consensus       130 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~--~~~W~~l  174 (341)
T PLN02153        130 FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIA--DGKWVQL  174 (341)
T ss_pred             eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECC--CCeEeeC
Confidence            34567889999888654211        1256666532  4679864

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.26  E-value=0.00083  Score=64.30  Aligned_cols=92  Identities=13%  Similarity=0.141  Sum_probs=58.7

Q ss_pred             ceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCC-CCCceEEEEE--cCCceeeEE-cCCCCCCC---C
Q 015251          206 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRY-SPVRGIVSFD--IADEQFREV-PKPDCGGL---N  278 (410)
Q Consensus       206 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~Il~fD--l~~e~~~~i-~lP~~~~~---~  278 (410)
                      ..+++|+..+++|..++.+|.........+.++|.||.+...... .....+..||  .++.+|..+ ++|.....   .
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~  247 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG  247 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence            479999999999999987765333334556789999999765211 1123344454  566799877 44432110   0


Q ss_pred             CcceEEEEeCCeEEEEEeC
Q 015251          279 RCNYHLTVLSGCLSVAVYG  297 (410)
Q Consensus       279 ~~~~~l~~~~G~L~~~~~~  297 (410)
                      ......++++|+|+++...
T Consensus       248 ~~~~~a~~~~~~Iyv~GG~  266 (346)
T TIGR03547       248 LAGAFAGISNGVLLVAGGA  266 (346)
T ss_pred             ccEEeeeEECCEEEEeecC
Confidence            0122367789999998754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA03098 kelch-like protein; Provisional

Probab=98.26  E-value=0.00017  Score=73.34  Aligned_cols=174  Identities=14%  Similarity=0.165  Sum_probs=107.5

Q ss_pred             EeccCceEEEeeccC----CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccc
Q 015251          123 VGSCNGLLCLSDSLF----NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRT  198 (410)
Q Consensus       123 ~~s~~Gll~l~~~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~  198 (410)
                      +.+.+|-|.+..+..    .+.+.++||.|++|..+|+.+..+....  +..++     -++..++....   .+.    
T Consensus       338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~--~~~~~-----~~iYv~GG~~~---~~~----  403 (534)
T PHA03098        338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPC--VVNVN-----NLIYVIGGISK---NDE----  403 (534)
T ss_pred             EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccce--EEEEC-----CEEEEECCcCC---CCc----
Confidence            445567665544321    2468899999999999988665432212  12222     25555543211   010    


Q ss_pred             cccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCC---CCceEEEEEcCCceeeEEcCCCCC
Q 015251          199 RRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYS---PVRGIVSFDIADEQFREVPKPDCG  275 (410)
Q Consensus       199 ~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~---~~~~Il~fDl~~e~~~~i~lP~~~  275 (410)
                           ....+++|+..+++|..+..+|.... ...++..+|.+|.+.......   ....+.+||+.+++|..++..+..
T Consensus       404 -----~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~  477 (534)
T PHA03098        404 -----LLKTVECFSLNTNKWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP  477 (534)
T ss_pred             -----ccceEEEEeCCCCeeeecCCCCcccc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc
Confidence                 02578999999999999887665443 345678899999987642111   124599999999999988422211


Q ss_pred             CCCCcceEEEEeCCeEEEEEeCCCC--eEEEEEEeeCCCCCceeeEEE
Q 015251          276 GLNRCNYHLTVLSGCLSVAVYGNYG--KLEIWVMKDYNVKESWAKELN  321 (410)
Q Consensus       276 ~~~~~~~~l~~~~G~L~~~~~~~~~--~l~IW~l~~~~~~~~W~~~~~  321 (410)
                         .....++.++|+|+++......  .-.||..+-.  ...|.....
T Consensus       478 ---r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~  520 (534)
T PHA03098        478 ---RINASLCIFNNKIYVVGGDKYEYYINEIEVYDDK--TNTWTLFCK  520 (534)
T ss_pred             ---cccceEEEECCEEEEEcCCcCCcccceeEEEeCC--CCEEEecCC
Confidence               1234567789999988764321  2356666542  467987653

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.22  E-value=0.00014  Score=68.93  Aligned_cols=152  Identities=13%  Similarity=0.139  Sum_probs=91.7

Q ss_pred             EeccCceEEEeecc----CCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccc
Q 015251          123 VGSCNGLLCLSDSL----FNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRT  198 (410)
Q Consensus       123 ~~s~~Gll~l~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~  198 (410)
                      .+..+|.|.+..+.    ..+.++++||.|.+|..+|+.+..+.... ....++     =++..+.....    ..    
T Consensus       119 ~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~-~~~~~~-----~~iYv~GG~~~----~~----  184 (323)
T TIGR03548       119 ACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQP-VCVKLQ-----NELYVFGGGSN----IA----  184 (323)
T ss_pred             EEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcc-eEEEEC-----CEEEEEcCCCC----cc----
Confidence            44567777554331    23579999999999999986543222111 112222     24555543211    00    


Q ss_pred             cccccCCceEEEEEeCCCceeecCCCCc-----eeecCCcceEECCeEEEEecCCCCC----------------------
Q 015251          199 RRVIYPRSDVQVYTVGSPAWRSKGKLAY-----QFVRRPSEALVKGRLHWVTRPRRYS----------------------  251 (410)
Q Consensus       199 ~~~~~~~~~~~Vyss~t~~Wr~~~~~p~-----~~~~~~~~v~~~G~lyw~~~~~~~~----------------------  251 (410)
                            ...+++|+..+++|+.+..++.     ........+..+|.+|.+.......                      
T Consensus       185 ------~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (323)
T TIGR03548       185 ------YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKE  258 (323)
T ss_pred             ------ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHH
Confidence                  1357899999999999875431     1112222344578999887652100                      


Q ss_pred             ----------CCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEeC
Q 015251          252 ----------PVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYG  297 (410)
Q Consensus       252 ----------~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~~  297 (410)
                                ..+.+.+||+.+++|+.++ +|...   .....++.++|+|+++...
T Consensus       259 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~---r~~~~~~~~~~~iyv~GG~  312 (323)
T TIGR03548       259 YFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFA---RCGAALLLTGNNIFSINGE  312 (323)
T ss_pred             HhCCCccccCcCceEEEEECCCCeeeEcccccccc---cCchheEEECCEEEEEecc
Confidence                      1257999999999999885 44211   1234578999999988753

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=97.67  E-value=0.0012  Score=58.41  Aligned_cols=113  Identities=12%  Similarity=0.138  Sum_probs=75.8

Q ss_pred             ceEEEEEeCCCceeecC--CCCceeecCCcceEECCeEEEEecCCCC---------CCCceEEEEEcCCceeeEEcCCCC
Q 015251          206 SDVQVYTVGSPAWRSKG--KLAYQFVRRPSEALVKGRLHWVTRPRRY---------SPVRGIVSFDIADEQFREVPKPDC  274 (410)
Q Consensus       206 ~~~~Vyss~t~~Wr~~~--~~p~~~~~~~~~v~~~G~lyw~~~~~~~---------~~~~~Il~fDl~~e~~~~i~lP~~  274 (410)
                      ..+++++..|-.||.+.  ..|........++..+|.+|.+..+.+.         .-.+.|++||++++.|..-+--..
T Consensus       157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~  236 (392)
T KOG4693|consen  157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM  236 (392)
T ss_pred             ccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc
Confidence            56888999999999885  3344444566777889999999876321         223689999999999975421111


Q ss_pred             CCCCCcceEEEEeCCeEEEEEeCC----CCeEEEEEEeeCCCCCceeeEE
Q 015251          275 GGLNRCNYHLTVLSGCLSVAVYGN----YGKLEIWVMKDYNVKESWAKEL  320 (410)
Q Consensus       275 ~~~~~~~~~l~~~~G~L~~~~~~~----~~~l~IW~l~~~~~~~~W~~~~  320 (410)
                      ........+..+.+|++++....+    ..--++|..+.  ...-|.+..
T Consensus       237 ~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~  284 (392)
T KOG4693|consen  237 KPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVIS  284 (392)
T ss_pred             CCCcccccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheeee
Confidence            111223446788999999987653    23357788765  245687744

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=97.38  E-value=0.0051  Score=57.76  Aligned_cols=171  Identities=13%  Similarity=0.130  Sum_probs=89.6

Q ss_pred             ceEEEEcccccceeeC--CCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCC
Q 015251          139 DAICIYNPFTRDYIEL--PKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSP  216 (410)
Q Consensus       139 ~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~  216 (410)
                      +.+|++|--+.+|.++  |.+|..+....+   +..|+.   .+..++.....-+...+.       +-..+.+|++.++
T Consensus        98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~---va~~s~---~l~~fGGEfaSPnq~qF~-------HYkD~W~fd~~tr  164 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQA---VAVPSN---ILWLFGGEFASPNQEQFH-------HYKDLWLFDLKTR  164 (521)
T ss_pred             eeeeEEeccccceeEeccCCCcCCCcccee---EEeccC---eEEEeccccCCcchhhhh-------hhhheeeeeeccc
Confidence            4799999999999887  333332222222   223332   222222111110011111       1256889999999


Q ss_pred             ceeecC--CCCceeecCCcceEECCeEEEEecCCCC----CCCceEEEEEcCCceeeEEcCCCCCCCC-CcceEEEEe-C
Q 015251          217 AWRSKG--KLAYQFVRRPSEALVKGRLHWVTRPRRY----SPVRGIVSFDIADEQFREVPKPDCGGLN-RCNYHLTVL-S  288 (410)
Q Consensus       217 ~Wr~~~--~~p~~~~~~~~~v~~~G~lyw~~~~~~~----~~~~~Il~fDl~~e~~~~i~lP~~~~~~-~~~~~l~~~-~  288 (410)
                      +|..+.  ..|.... ...-|.....|.-+..-.+.    .--+.+.+||+++=+|..+..+-. ... .....+.+. .
T Consensus       165 kweql~~~g~PS~RS-GHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga-~PtpRSGcq~~vtpq  242 (521)
T KOG1230|consen  165 KWEQLEFGGGPSPRS-GHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-GPTPRSGCQFSVTPQ  242 (521)
T ss_pred             hheeeccCCCCCCCc-cceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC-CCCCCCcceEEecCC
Confidence            999886  3343221 12223333333222211110    112579999999999999965421 111 122344554 7


Q ss_pred             CeEEEEEeCC-----------CCeEEEEEEeeC---CCCCceeeEEEecc
Q 015251          289 GCLSVAVYGN-----------YGKLEIWVMKDY---NVKESWAKELNIGA  324 (410)
Q Consensus       289 G~L~~~~~~~-----------~~~l~IW~l~~~---~~~~~W~~~~~i~~  324 (410)
                      |.+.+.....           ...-++|.|+..   +++-.|.++..+.+
T Consensus       243 g~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~  292 (521)
T KOG1230|consen  243 GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGV  292 (521)
T ss_pred             CcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCC
Confidence            7777765421           235799999843   22456777776666

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.33  E-value=0.0011  Score=60.50  Aligned_cols=45  Identities=29%  Similarity=0.485  Sum_probs=39.9

Q ss_pred             CCCCCCc----HHHHHHHHccCCcccccceecccHhhHhhhCChhhhhh
Q 015251           23 TGMETLP----REIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANL   67 (410)
Q Consensus        23 ~~~~~LP----~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~   67 (410)
                      ..+..||    +++.+.||+.|...+|..|..|||+|+++++++..-+.
T Consensus        73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk  121 (499)
T KOG0281|consen   73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK  121 (499)
T ss_pred             HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence            4567899    99999999999999999999999999999999865443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=9.2e-05  Score=66.66  Aligned_cols=39  Identities=33%  Similarity=0.505  Sum_probs=36.2

Q ss_pred             CCCCCcHHHHHHHHccCCcccccceecccHhhHhhhCCh
Q 015251           24 GMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDP   62 (410)
Q Consensus        24 ~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~   62 (410)
                      .|..||||++..||+.|+-|+|++...|||+|+++.++.
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de  135 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE  135 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc
Confidence            378999999999999999999999999999999998664

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=96.82  E-value=0.17  Score=50.71  Aligned_cols=163  Identities=12%  Similarity=0.090  Sum_probs=95.6

Q ss_pred             ceEEEEcccccceeeCCCCCC---CCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCC
Q 015251          139 DAICIYNPFTRDYIELPKSMQ---YPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGS  215 (410)
Q Consensus       139 ~~~~V~NP~T~~~~~LP~~~~---~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t  215 (410)
                      ..+..+|+.|++|..+.+...   .+....++  +++     =||+.++....   .+..         ...++||+..+
T Consensus       139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~--~~g-----~~l~vfGG~~~---~~~~---------~ndl~i~d~~~  199 (482)
T KOG0379|consen  139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSAT--VVG-----TKLVVFGGIGG---TGDS---------LNDLHIYDLET  199 (482)
T ss_pred             hheEeccCCCCcEEEecCcCCCCCCcccceEE--EEC-----CEEEEECCccC---cccc---------eeeeeeecccc
Confidence            379999999999999865322   11112222  222     24555533211   1101         36899999999


Q ss_pred             CceeecCCCC--ceeecCCcceEECCeEEEEecCC-CCCCCceEEEEEcCCceeeEEcCCCCC-CCCCcceEEEEeCCeE
Q 015251          216 PAWRSKGKLA--YQFVRRPSEALVKGRLHWVTRPR-RYSPVRGIVSFDIADEQFREVPKPDCG-GLNRCNYHLTVLSGCL  291 (410)
Q Consensus       216 ~~Wr~~~~~p--~~~~~~~~~v~~~G~lyw~~~~~-~~~~~~~Il~fDl~~e~~~~i~lP~~~-~~~~~~~~l~~~~G~L  291 (410)
                      .+|..+....  .........+.+++.++-+.... .....+.+..||+.+.+|..++ +... ........++..+..+
T Consensus       200 ~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~~R~~h~~~~~~~~~  278 (482)
T KOG0379|consen  200 STWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPSPRSGHSLTVSGDHL  278 (482)
T ss_pred             ccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCCCcceeeeEEECCEE
Confidence            9999886321  11223444556666666665543 2234467999999998888332 1111 0111234566666677


Q ss_pred             EEEEeCCC----CeEEEEEEeeCCCCCceeeEEEec
Q 015251          292 SVAVYGNY----GKLEIWVMKDYNVKESWAKELNIG  323 (410)
Q Consensus       292 ~~~~~~~~----~~l~IW~l~~~~~~~~W~~~~~i~  323 (410)
                      .++.....    .--++|.|+..  +..|.......
T Consensus       279 ~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~~~~~~  312 (482)
T KOG0379|consen  279 LLFGGGTDPKQEPLGDLYGLDLE--TLVWSKVESVG  312 (482)
T ss_pred             EEEcCCccccccccccccccccc--ccceeeeeccc
Confidence            77765533    35678888753  57899877666

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=96.50  E-value=0.023  Score=50.44  Aligned_cols=157  Identities=12%  Similarity=0.121  Sum_probs=93.5

Q ss_pred             ceEEEEEeCCCceeecC--C-CCceeecCCcceEECCeEEEEecCC--CCCCCceEEEEEcCCceeeEEc---CCCCCCC
Q 015251          206 SDVQVYTVGSPAWRSKG--K-LAYQFVRRPSEALVKGRLHWVTRPR--RYSPVRGIVSFDIADEQFREVP---KPDCGGL  277 (410)
Q Consensus       206 ~~~~Vyss~t~~Wr~~~--~-~p~~~~~~~~~v~~~G~lyw~~~~~--~~~~~~~Il~fDl~~e~~~~i~---lP~~~~~  277 (410)
                      ..++-|+.++++|+...  . +|-.. ...++.+++..+|.+....  ....+..+-+||+++.+|+.+.   -|+.-. 
T Consensus       105 N~Ly~fDp~t~~W~~p~v~G~vPgaR-DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR-  182 (392)
T KOG4693|consen  105 NLLYEFDPETNVWKKPEVEGFVPGAR-DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR-  182 (392)
T ss_pred             ceeeeeccccccccccceeeecCCcc-CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh-
Confidence            56788999999999764  2 23222 3455677888999887542  2234567999999999999983   343211 


Q ss_pred             CCcceEEEEeCCeEEEEEeCC-----------CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCC
Q 015251          278 NRCNYHLTVLSGCLSVAVYGN-----------YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLN  346 (410)
Q Consensus       278 ~~~~~~l~~~~G~L~~~~~~~-----------~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~  346 (410)
                        ......+++|..++.....           .-.-.|-.|+-  ..+.|.+...-.+ .|.+-+.     .        
T Consensus       183 --DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~-~P~GRRS-----H--------  244 (392)
T KOG4693|consen  183 --DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTM-KPGGRRS-----H--------  244 (392)
T ss_pred             --hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCc-CCCcccc-----c--------
Confidence              1223455667776665321           11234445543  2467987533222 2222110     0        


Q ss_pred             CceeEEEEEccCCcEEEEec--------CCEEEEEeCCCCcEEEEEEeCC
Q 015251          347 GRVVRVVCILEKGEILLEYK--------SRVLVSYDPKRRTFNEFVFKGT  388 (410)
Q Consensus       347 ~~~~~~~~~~~~g~il~~~~--------~~~l~~yd~~~~~~~~v~~~~~  388 (410)
                            ..+.-||++.+.-+        -..|+.||++|..|+.|...|.
T Consensus       245 ------S~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk  288 (392)
T KOG4693|consen  245 ------STFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGK  288 (392)
T ss_pred             ------ceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCC
Confidence                  12233666655421        1358999999999999997763

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=96.05  E-value=0.86  Score=45.66  Aligned_cols=158  Identities=10%  Similarity=0.082  Sum_probs=95.4

Q ss_pred             eEEEEcccccceeeCCCCCCCCC---CceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCC
Q 015251          140 AICIYNPFTRDYIELPKSMQYPD---QEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSP  216 (410)
Q Consensus       140 ~~~V~NP~T~~~~~LP~~~~~~~---~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~  216 (410)
                      .++|+|-.++.|......-..+.   +..++..+       =+++.++....   ...         ....++.|+..|+
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~-------~~l~lfGG~~~---~~~---------~~~~l~~~d~~t~  149 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG-------DKLYLFGGTDK---KYR---------NLNELHSLDLSTR  149 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEEC-------CeEEEEccccC---CCC---------ChhheEeccCCCC
Confidence            49999999988887765332221   11222211       23444432111   000         1368999999999


Q ss_pred             ceeecCCCCc--eeecCCcceEECCeEEEEecCCCCC-CCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEE
Q 015251          217 AWRSKGKLAY--QFVRRPSEALVKGRLHWVTRPRRYS-PVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSV  293 (410)
Q Consensus       217 ~Wr~~~~~p~--~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~  293 (410)
                      +|+.+.....  ........+..+..+|.+....... ..+.+.+||+.+.+|..+..............++..++++++
T Consensus       150 ~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v  229 (482)
T KOG0379|consen  150 TWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLV  229 (482)
T ss_pred             cEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEE
Confidence            9998753221  1123344556667777776553222 467899999999999988554322222344567888999988


Q ss_pred             EEeCC---CCeEEEEEEeeCCCCCceee
Q 015251          294 AVYGN---YGKLEIWVMKDYNVKESWAK  318 (410)
Q Consensus       294 ~~~~~---~~~l~IW~l~~~~~~~~W~~  318 (410)
                      +....   ..-=++|.|+=.  ...|.+
T Consensus       230 ~gG~~~~~~~l~D~~~ldl~--~~~W~~  255 (482)
T KOG0379|consen  230 FGGGDDGDVYLNDVHILDLS--TWEWKL  255 (482)
T ss_pred             EeccccCCceecceEeeecc--cceeee
Confidence            87543   234589999853  356774

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.87  E-value=0.0029  Score=57.42  Aligned_cols=45  Identities=33%  Similarity=0.573  Sum_probs=39.6

Q ss_pred             CCCCcHHHHHHHHccCC-----cccccceecccHhhHhhhCChhhhhhhh
Q 015251           25 METLPREIVLHILLRLP-----ITSLVQFKFVCRAWRALAQDPLLANLHN   69 (410)
Q Consensus        25 ~~~LP~Dll~eIL~rLP-----~~sl~r~r~VcK~W~~li~s~~F~~~~~   69 (410)
                      +..||||++.+||.++=     ..+|-++.+|||.|+-...+|.|-+.-+
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC  156 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC  156 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence            57899999999998764     5899999999999999999998877644

>PF13964 Kelch_6: Kelch motif

Probab=95.33  E-value=0.044  Score=35.91  Aligned_cols=39  Identities=13%  Similarity=0.208  Sum_probs=32.2

Q ss_pred             CcceEECCeEEEEecCCC-CCCCceEEEEEcCCceeeEEc
Q 015251          232 PSEALVKGRLHWVTRPRR-YSPVRGIVSFDIADEQFREVP  270 (410)
Q Consensus       232 ~~~v~~~G~lyw~~~~~~-~~~~~~Il~fDl~~e~~~~i~  270 (410)
                      .+.|.++|.||.+..... ......+..||+++++|+.++
T Consensus         5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~   44 (50)
T PF13964_consen    5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP   44 (50)
T ss_pred             CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence            456889999999988744 345678999999999999984

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=94.28  E-value=1.5  Score=41.84  Aligned_cols=135  Identities=14%  Similarity=0.228  Sum_probs=79.5

Q ss_pred             ceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEEEEeC----C----CCeEEEEEEeeCCCCCceeeEEEeccC
Q 015251          254 RGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYG----N----YGKLEIWVMKDYNVKESWAKELNIGAY  325 (410)
Q Consensus       254 ~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~~~~~----~----~~~l~IW~l~~~~~~~~W~~~~~i~~~  325 (410)
                      +.+.+||+.+.+|..+.-|...........++.-.|-|.+....    +    ..--++|+++=-  ...|.+...-+.+
T Consensus        98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~--trkweql~~~g~P  175 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLK--TRKWEQLEFGGGP  175 (521)
T ss_pred             eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeec--cchheeeccCCCC
Confidence            56999999999999884442111111122233444666666432    1    123689999752  4679986644443


Q ss_pred             cCcccccccCCcchhhcccCCCceeEEEEEcc-CCcEEEEecCCEEEEEeCCCCcEEEEEEeCC----CCeEEEEEe-ec
Q 015251          326 IPKGLKQSLDRPLKIWKNSLNGRVVRVVCILE-KGEILLEYKSRVLVSYDPKRRTFNEFVFKGT----PNWFQTIVH-QG  399 (410)
Q Consensus       326 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~il~~~~~~~l~~yd~~~~~~~~v~~~~~----~~~~~~~~y-~~  399 (410)
                      .|+     -++.+..||..    .+-+=+|.. +++.++...   |++||++|=+|.++...|.    .+.++.++| ..
T Consensus       176 S~R-----SGHRMvawK~~----lilFGGFhd~nr~y~YyND---vy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg  243 (521)
T KOG1230|consen  176 SPR-----SGHRMVAWKRQ----LILFGGFHDSNRDYIYYND---VYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQG  243 (521)
T ss_pred             CCC-----ccceeEEeeee----EEEEcceecCCCceEEeee---eEEEeccceeeeeccCCCCCCCCCCcceEEecCCC
Confidence            333     24455556532    222234432 345555544   8999999999999998662    366777777 55


Q ss_pred             Ccc
Q 015251          400 SFN  402 (410)
Q Consensus       400 slv  402 (410)
                      +.+
T Consensus       244 ~i~  246 (521)
T KOG1230|consen  244 GIV  246 (521)
T ss_pred             cEE
Confidence            443

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=93.85  E-value=0.14  Score=32.77  Aligned_cols=38  Identities=11%  Similarity=0.236  Sum_probs=31.3

Q ss_pred             CcceEECCeEEEEecCCC-CCCCceEEEEEcCCceeeEE
Q 015251          232 PSEALVKGRLHWVTRPRR-YSPVRGIVSFDIADEQFREV  269 (410)
Q Consensus       232 ~~~v~~~G~lyw~~~~~~-~~~~~~Il~fDl~~e~~~~i  269 (410)
                      ...+.++|.+|.+..... ......+..||+.+.+|..+
T Consensus         5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~   43 (47)
T PF01344_consen    5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL   43 (47)
T ss_dssp             EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred             CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence            346789999999987744 44567899999999999987

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13964 Kelch_6: Kelch motif

Probab=92.80  E-value=0.29  Score=31.93  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.2

Q ss_pred             CceEEEEcccccceeeCCCCCC
Q 015251          138 NDAICIYNPFTRDYIELPKSMQ  159 (410)
Q Consensus       138 ~~~~~V~NP~T~~~~~LP~~~~  159 (410)
                      .+.++++||.|++|.++|+.+.
T Consensus        27 ~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen   27 SNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             cccEEEEcCCCCcEEECCCCCC
Confidence            3689999999999999998764

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.29  E-value=1.2  Score=40.29  Aligned_cols=123  Identities=15%  Similarity=0.209  Sum_probs=72.5

Q ss_pred             EEeccCceEEEeeccCCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccccccc
Q 015251          122 AVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRV  201 (410)
Q Consensus       122 ~~~s~~Gll~l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~  201 (410)
                      |++.-+|-|-...- ..+.+...||.++.--.+|+|........  ...-|+.    .-+.+..                
T Consensus       194 i~atpdGsvwyasl-agnaiaridp~~~~aev~p~P~~~~~gsR--riwsdpi----g~~witt----------------  250 (353)
T COG4257         194 ICATPDGSVWYASL-AGNAIARIDPFAGHAEVVPQPNALKAGSR--RIWSDPI----GRAWITT----------------  250 (353)
T ss_pred             eEECCCCcEEEEec-cccceEEcccccCCcceecCCCccccccc--ccccCcc----CcEEEec----------------
Confidence            45555555544422 24567778999998888888654221111  1223332    1122221                


Q ss_pred             ccCCceEEEEEeCCCceeecCCCCceeecCCcceEECC-eEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCC
Q 015251          202 IYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKG-RLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDC  274 (410)
Q Consensus       202 ~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~  274 (410)
                       +....++-|+..+.+|++..-+.....  ..+++++. -.-|+..-    ..+.|..||.++++|.+++.|..
T Consensus       251 -wg~g~l~rfdPs~~sW~eypLPgs~ar--pys~rVD~~grVW~sea----~agai~rfdpeta~ftv~p~pr~  317 (353)
T COG4257         251 -WGTGSLHRFDPSVTSWIEYPLPGSKAR--PYSMRVDRHGRVWLSEA----DAGAIGRFDPETARFTVLPIPRP  317 (353)
T ss_pred             -cCCceeeEeCcccccceeeeCCCCCCC--cceeeeccCCcEEeecc----ccCceeecCcccceEEEecCCCC
Confidence             113578889999999998753322221  22344432 24466433    36899999999999999999863

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=92.17  E-value=1.3  Score=35.75  Aligned_cols=71  Identities=24%  Similarity=0.352  Sum_probs=50.3

Q ss_pred             ceEEEEEcCCc--eeeEEcCCCCCCCC----------CcceEEEEeCCeEEEEEeC---------CCCeEEEEEEeeC-C
Q 015251          254 RGIVSFDIADE--QFREVPKPDCGGLN----------RCNYHLTVLSGCLSVAVYG---------NYGKLEIWVMKDY-N  311 (410)
Q Consensus       254 ~~Il~fDl~~e--~~~~i~lP~~~~~~----------~~~~~l~~~~G~L~~~~~~---------~~~~l~IW~l~~~-~  311 (410)
                      ..|+..|+-++  .++.|+||......          .....+++.+|+|-++...         ...++.+|.|... +
T Consensus         6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~   85 (131)
T PF07762_consen    6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG   85 (131)
T ss_pred             CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence            45788888655  78889998643211          2234688899999887642         2347999999985 2


Q ss_pred             CCCceeeEEEecc
Q 015251          312 VKESWAKELNIGA  324 (410)
Q Consensus       312 ~~~~W~~~~~i~~  324 (410)
                      ....|.+.+.++.
T Consensus        86 ~~~~W~~d~~v~~   98 (131)
T PF07762_consen   86 SSWEWKKDCEVDL   98 (131)
T ss_pred             CCCCEEEeEEEEh
Confidence            3578999999887

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=91.79  E-value=0.54  Score=30.48  Aligned_cols=41  Identities=17%  Similarity=0.207  Sum_probs=31.9

Q ss_pred             CcceEECCeEEEEecC---CCCCCCceEEEEEcCCceeeEEcCC
Q 015251          232 PSEALVKGRLHWVTRP---RRYSPVRGIVSFDIADEQFREVPKP  272 (410)
Q Consensus       232 ~~~v~~~G~lyw~~~~---~~~~~~~~Il~fDl~~e~~~~i~lP  272 (410)
                      ..++..+|+||.+...   ........+-.||+++.+|..++.+
T Consensus         5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~   48 (49)
T PF07646_consen    5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM   48 (49)
T ss_pred             eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence            3567889999999876   2334557899999999999988543

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=89.47  E-value=7.7  Score=36.99  Aligned_cols=117  Identities=16%  Similarity=0.122  Sum_probs=66.3

Q ss_pred             CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEE--E---
Q 015251          138 NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVY--T---  212 (410)
Q Consensus       138 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vy--s---  212 (410)
                      .....|+++.|+....+|....... .. +.+..    + -+|..+.........+.      ...  ..+|++  +   
T Consensus        85 ~~~t~vyDt~t~av~~~P~l~~pk~-~p-isv~V----G-~~LY~m~~~~~~~~~~~------~~~--~~FE~l~~~~~~  149 (342)
T PF07893_consen   85 SGRTLVYDTDTRAVATGPRLHSPKR-CP-ISVSV----G-DKLYAMDRSPFPEPAGR------PDF--PCFEALVYRPPP  149 (342)
T ss_pred             CCCeEEEECCCCeEeccCCCCCCCc-ce-EEEEe----C-CeEEEeeccCccccccC------ccc--eeEEEecccccc
Confidence            3578999999999999998543221 11 22221    1 23555533222100000      000  144444  3   


Q ss_pred             -----eCCCceeecCCCCceee-------cCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEE---cCCC
Q 015251          213 -----VGSPAWRSKGKLAYQFV-------RRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREV---PKPD  273 (410)
Q Consensus       213 -----s~t~~Wr~~~~~p~~~~-------~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i---~lP~  273 (410)
                           ..+-+|+.++.+|+...       ..+.+|+ +|.--|+.....   ...-.+||+.+.+|+..   .||.
T Consensus       150 ~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~---~~GTysfDt~~~~W~~~GdW~LPF  221 (342)
T PF07893_consen  150 DDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR---RWGTYSFDTESHEWRKHGDWMLPF  221 (342)
T ss_pred             ccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCC---ceEEEEEEcCCcceeeccceecCc
Confidence                 22238888887775433       2344555 888888865510   12699999999999887   7775

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=88.79  E-value=17  Score=32.52  Aligned_cols=203  Identities=14%  Similarity=0.104  Sum_probs=108.0

Q ss_pred             eccCceEEEeeccCCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccccccccc
Q 015251          124 GSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIY  203 (410)
Q Consensus       124 ~s~~Gll~l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~  203 (410)
                      ...+|-|.+.+. ..+.++.++|.+++...+..+.       ..|+.++...+  +++...                   
T Consensus         8 d~~~g~l~~~D~-~~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g--~l~v~~-------------------   58 (246)
T PF08450_consen    8 DPRDGRLYWVDI-PGGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDG--RLYVAD-------------------   58 (246)
T ss_dssp             ETTTTEEEEEET-TTTEEEEEETTTTEEEEEESSS-------EEEEEEECTTS--EEEEEE-------------------
T ss_pred             ECCCCEEEEEEc-CCCEEEEEECCCCeEEEEecCC-------CceEEEEccCC--EEEEEE-------------------
Confidence            444566655553 3578999999999886644432       45667774332  232221                   


Q ss_pred             CCceEEEEEeCCCceeecCCCCc---eee-cCCcceEECCeEEEEecCCCC-CCC--ceEEEEEcCCceeeEE----cCC
Q 015251          204 PRSDVQVYTVGSPAWRSKGKLAY---QFV-RRPSEALVKGRLHWVTRPRRY-SPV--RGIVSFDIADEQFREV----PKP  272 (410)
Q Consensus       204 ~~~~~~Vyss~t~~Wr~~~~~p~---~~~-~~~~~v~~~G~lyw~~~~~~~-~~~--~~Il~fDl~~e~~~~i----~lP  272 (410)
                       .....+++..+++++.+...+.   ... ...-.+--+|.+|.-...... ...  ..|..++.. .+...+    ..|
T Consensus        59 -~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p  136 (246)
T PF08450_consen   59 -SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP  136 (246)
T ss_dssp             -TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE
T ss_pred             -cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc
Confidence             1455677888998887654311   111 111233447887765543211 111  679999999 444333    222


Q ss_pred             CCCCCCCcceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEe-ccCcCcccccccCCcchhhcccCCCceeE
Q 015251          273 DCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNI-GAYIPKGLKQSLDRPLKIWKNSLNGRVVR  351 (410)
Q Consensus       273 ~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  351 (410)
                      .        .-...-+|+..++.......  ||..+-......+.....+ ++  +...                 ....
T Consensus       137 N--------Gi~~s~dg~~lyv~ds~~~~--i~~~~~~~~~~~~~~~~~~~~~--~~~~-----------------g~pD  187 (246)
T PF08450_consen  137 N--------GIAFSPDGKTLYVADSFNGR--IWRFDLDADGGELSNRRVFIDF--PGGP-----------------GYPD  187 (246)
T ss_dssp             E--------EEEEETTSSEEEEEETTTTE--EEEEEEETTTCCEEEEEEEEE---SSSS-----------------CEEE
T ss_pred             c--------ceEECCcchheeecccccce--eEEEeccccccceeeeeeEEEc--CCCC-----------------cCCC
Confidence            1        11233356544444322333  6766643223345544433 22  1100                 0123


Q ss_pred             EEEEccCCcEEEE-ecCCEEEEEeCCCCcEEEEEEe
Q 015251          352 VVCILEKGEILLE-YKSRVLVSYDPKRRTFNEFVFK  386 (410)
Q Consensus       352 ~~~~~~~g~il~~-~~~~~l~~yd~~~~~~~~v~~~  386 (410)
                      =+++..+|.|++. ...+++..||++.+.++.+..+
T Consensus       188 G~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p  223 (246)
T PF08450_consen  188 GLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELP  223 (246)
T ss_dssp             EEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S
T ss_pred             cceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC
Confidence            3566778888775 4568899999998888888776

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.93  E-value=0.22  Score=47.55  Aligned_cols=41  Identities=29%  Similarity=0.487  Sum_probs=36.6

Q ss_pred             CCCCCCCcHHHHHHHHccCCcccccceecccHhhHhhhCCh
Q 015251           22 ATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDP   62 (410)
Q Consensus        22 ~~~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~   62 (410)
                      ....-.||.|++..||+-|..+++.|++.+|+.|+.+..+.
T Consensus        69 ~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~  109 (483)
T KOG4341|consen   69 NSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG  109 (483)
T ss_pred             ccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence            34455799999999999999999999999999999998764

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=87.81  E-value=13  Score=35.34  Aligned_cols=83  Identities=17%  Similarity=0.320  Sum_probs=50.8

Q ss_pred             eEEEEEeCCCceeecCC--CCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCce-----------eeEEcCCC
Q 015251          207 DVQVYTVGSPAWRSKGK--LAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ-----------FREVPKPD  273 (410)
Q Consensus       207 ~~~Vyss~t~~Wr~~~~--~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~-----------~~~i~lP~  273 (410)
                      .+.-|+-.+.+|+..++  +|+    .+.+.|+..-=-|+.-..... ...|-+.|+....           |..+..|.
T Consensus       200 GTysfDt~~~~W~~~GdW~LPF----~G~a~y~~el~~W~Gls~~~~-~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~  274 (342)
T PF07893_consen  200 GTYSFDTESHEWRKHGDWMLPF----HGQAEYVPELDLWFGLSSDGG-GGHLCACDVSSADSASPPPEWKLTWEELFPPE  274 (342)
T ss_pred             EEEEEEcCCcceeeccceecCc----CCccEECCCcCeEEEeccCCC-CcEEEEEeccccccCCCCCcceeccccccccc
Confidence            57778888889999974  454    345667766667877652211 1588999997632           22233332


Q ss_pred             CCCCCCcceEEEEe-CCeEEEEEe
Q 015251          274 CGGLNRCNYHLTVL-SGCLSVAVY  296 (410)
Q Consensus       274 ~~~~~~~~~~l~~~-~G~L~~~~~  296 (410)
                      .  ......+|+.+ +|+.|++..
T Consensus       275 ~--~~~~~~~Lv~lG~grFCi~~~  296 (342)
T PF07893_consen  275 E--WRHVGATLVYLGSGRFCIVEF  296 (342)
T ss_pred             c--ccccCceEEECCCCCEEEEEE
Confidence            2  12234567777 457787754

>PLN02772 guanylate kinase

Probab=85.86  E-value=6.6  Score=37.90  Aligned_cols=75  Identities=15%  Similarity=0.172  Sum_probs=51.7

Q ss_pred             CCcceEECCeEEEEecCCCCC-CCceEEEEEcCCceeeEE----cCCCCCCCCCcceEEEEe-CCeEEEEEeCCCCeEEE
Q 015251          231 RPSEALVKGRLHWVTRPRRYS-PVRGIVSFDIADEQFREV----PKPDCGGLNRCNYHLTVL-SGCLSVAVYGNYGKLEI  304 (410)
Q Consensus       231 ~~~~v~~~G~lyw~~~~~~~~-~~~~Il~fDl~~e~~~~i----~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~l~I  304 (410)
                      ...+|.++..+|.+..+.+.. ....+.+||..+.+|..-    ..|...    ...+.+.+ +++|.++.-+....-+|
T Consensus        27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r----~GhSa~v~~~~rilv~~~~~~~~~~~  102 (398)
T PLN02772         27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC----KGYSAVVLNKDRILVIKKGSAPDDSI  102 (398)
T ss_pred             cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC----CcceEEEECCceEEEEeCCCCCccce
Confidence            356788999999998764332 457899999999999753    223211    12234444 67888887655567899


Q ss_pred             EEEee
Q 015251          305 WVMKD  309 (410)
Q Consensus       305 W~l~~  309 (410)
                      |.|+=
T Consensus       103 w~l~~  107 (398)
T PLN02772        103 WFLEV  107 (398)
T ss_pred             EEEEc
Confidence            99983

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=85.35  E-value=33  Score=32.26  Aligned_cols=124  Identities=15%  Similarity=0.183  Sum_probs=79.6

Q ss_pred             CCeEEEEecCCCCCCCceEEEEEcCCceeeEE---cCCCCCCCCCcceEE-EEeCCeEEEEEeCCCCeEEEEEEeeCCCC
Q 015251          238 KGRLHWVTRPRRYSPVRGIVSFDIADEQFREV---PKPDCGGLNRCNYHL-TVLSGCLSVAVYGNYGKLEIWVMKDYNVK  313 (410)
Q Consensus       238 ~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i---~lP~~~~~~~~~~~l-~~~~G~L~~~~~~~~~~l~IW~l~~~~~~  313 (410)
                      +|.+-|.+.-    +.+.|..||++.......   .+++..+    ...+ .--+|+++++...=..++++|..+..  .
T Consensus       155 ~~~~l~v~DL----G~Dri~~y~~~dg~L~~~~~~~v~~G~G----PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~--~  224 (346)
T COG2706         155 DGRYLVVPDL----GTDRIFLYDLDDGKLTPADPAEVKPGAG----PRHIVFHPNGKYAYLVNELNSTVDVLEYNPA--V  224 (346)
T ss_pred             CCCEEEEeec----CCceEEEEEcccCccccccccccCCCCC----cceEEEcCCCcEEEEEeccCCEEEEEEEcCC--C
Confidence            4555555543    457888888886665432   3443322    2223 33478888776544679999998864  3


Q ss_pred             CceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEecC----CEEEEEeCCCCcEEEEEEe
Q 015251          314 ESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKS----RVLVSYDPKRRTFNEFVFK  386 (410)
Q Consensus       314 ~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~----~~l~~yd~~~~~~~~v~~~  386 (410)
                      ++-...-+|.. +|.++              ........|.+..||++++..+.    -.++.-|..+++++-+...
T Consensus       225 g~~~~lQ~i~t-lP~dF--------------~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~  286 (346)
T COG2706         225 GKFEELQTIDT-LPEDF--------------TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT  286 (346)
T ss_pred             ceEEEeeeecc-Ccccc--------------CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence            45666666654 55432              22346778888999999987543    2577888999998888764

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=84.87  E-value=1.4  Score=28.43  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=22.2

Q ss_pred             cceEE-CCeEEEEecCCCC-CCCceEEEEEcCCceeeEE
Q 015251          233 SEALV-KGRLHWVTRPRRY-SPVRGIVSFDIADEQFREV  269 (410)
Q Consensus       233 ~~v~~-~G~lyw~~~~~~~-~~~~~Il~fDl~~e~~~~i  269 (410)
                      .++.+ ++.+|.+...... ...+.+..||+.+.+|+.+
T Consensus         6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~   44 (49)
T PF13418_consen    6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL   44 (49)
T ss_dssp             EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred             EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence            34555 5788887765322 2346789999999999998

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=84.10  E-value=29  Score=30.53  Aligned_cols=103  Identities=13%  Similarity=0.065  Sum_probs=55.6

Q ss_pred             cCceEEEeeccCCceEEEEcccccceee---CCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccc
Q 015251          126 CNGLLCLSDSLFNDAICIYNPFTRDYIE---LPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVI  202 (410)
Q Consensus       126 ~~Gll~l~~~~~~~~~~V~NP~T~~~~~---LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~  202 (410)
                      -+|.++...  ....++.+|+.|++...   ++.+...   ..   ..     ..-+|+...   .              
T Consensus        35 ~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~---~~---~~-----~~~~v~v~~---~--------------   84 (238)
T PF13360_consen   35 DGGRVYVAS--GDGNLYALDAKTGKVLWRFDLPGPISG---AP---VV-----DGGRVYVGT---S--------------   84 (238)
T ss_dssp             ETTEEEEEE--TTSEEEEEETTTSEEEEEEECSSCGGS---GE---EE-----ETTEEEEEE---T--------------
T ss_pred             eCCEEEEEc--CCCEEEEEECCCCCEEEEeeccccccc---ee---ee-----ccccccccc---c--------------
Confidence            677777764  46789999999998643   3322111   10   11     112332221   1              


Q ss_pred             cCCceEEEEEeCCC--ceee-cCCCCc-eeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCcee
Q 015251          203 YPRSDVQVYTVGSP--AWRS-KGKLAY-QFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQF  266 (410)
Q Consensus       203 ~~~~~~~Vyss~t~--~Wr~-~~~~p~-~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~  266 (410)
                        ...+..++..++  .|+. ....+. ...........++.+|.....      ..|.++|+.+.+-
T Consensus        85 --~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~l~~~d~~tG~~  144 (238)
T PF13360_consen   85 --DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS------GKLVALDPKTGKL  144 (238)
T ss_dssp             --TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC------SEEEEEETTTTEE
T ss_pred             --eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc------CcEEEEecCCCcE
Confidence              135667776666  7983 432222 122222233446677766655      7999999987653

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=82.94  E-value=27  Score=33.92  Aligned_cols=113  Identities=14%  Similarity=0.210  Sum_probs=62.2

Q ss_pred             cceEECCeEEEEecCCCCCCCceEEEEEcCCce--eeEEcCCCCCCC------CCcceEEEEeCCeEEEEEeCCCCeEEE
Q 015251          233 SEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ--FREVPKPDCGGL------NRCNYHLTVLSGCLSVAVYGNYGKLEI  304 (410)
Q Consensus       233 ~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~--~~~i~lP~~~~~------~~~~~~l~~~~G~L~~~~~~~~~~l~I  304 (410)
                      .++..+|.+|.....      +.+.+||.++.+  |+ .+++.....      .......+..+|++++...  ..  .+
T Consensus        64 sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~--~g--~l  132 (394)
T PRK11138         64 HPAVAYNKVYAADRA------GLVKALDADTGKEIWS-VDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE--KG--QV  132 (394)
T ss_pred             ccEEECCEEEEECCC------CeEEEEECCCCcEeeE-EcCCCcccccccccccccccccEEECCEEEEEcC--CC--EE
Confidence            457889999988765      689999987554  54 233321100      0011224556777665432  22  35


Q ss_pred             EEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEecCCEEEEEeCCCCcEEE
Q 015251          305 WVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNE  382 (410)
Q Consensus       305 W~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~~l~~yd~~~~~~~~  382 (410)
                      ..++....+..|.....=..                        .-.|+.  .++.+++...++.++.+|.+|++...
T Consensus       133 ~ald~~tG~~~W~~~~~~~~------------------------~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W  184 (394)
T PRK11138        133 YALNAEDGEVAWQTKVAGEA------------------------LSRPVV--SDGLVLVHTSNGMLQALNESDGAVKW  184 (394)
T ss_pred             EEEECCCCCCcccccCCCce------------------------ecCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence            55553223678876431000                        011211  14556666666778899998888654

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=81.28  E-value=2.3  Score=26.99  Aligned_cols=21  Identities=19%  Similarity=0.472  Sum_probs=17.9

Q ss_pred             CceEEEEEeCCCceeecCCCC
Q 015251          205 RSDVQVYTVGSPAWRSKGKLA  225 (410)
Q Consensus       205 ~~~~~Vyss~t~~Wr~~~~~p  225 (410)
                      ...+++|+..+++|+.++.+|
T Consensus        27 ~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen   27 TNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEEEEEETTTTEEEEEEEES
T ss_pred             eeeEEEEeCCCCEEEEcCCCC
Confidence            368999999999999887654

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=80.47  E-value=44  Score=30.12  Aligned_cols=172  Identities=17%  Similarity=0.154  Sum_probs=87.6

Q ss_pred             ceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCC----ceeeEEcCCCCCCCCCcc
Q 015251          206 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIAD----EQFREVPKPDCGGLNRCN  281 (410)
Q Consensus       206 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~----e~~~~i~lP~~~~~~~~~  281 (410)
                      ....+|+..++++|.+......++ .+.++.-||.+.-.....  .+...|-.|+..+    ..|.  ..|........-
T Consensus        46 a~s~~yD~~tn~~rpl~v~td~FC-Sgg~~L~dG~ll~tGG~~--~G~~~ir~~~p~~~~~~~~w~--e~~~~m~~~RWY  120 (243)
T PF07250_consen   46 AHSVEYDPNTNTFRPLTVQTDTFC-SGGAFLPDGRLLQTGGDN--DGNKAIRIFTPCTSDGTCDWT--ESPNDMQSGRWY  120 (243)
T ss_pred             EEEEEEecCCCcEEeccCCCCCcc-cCcCCCCCCCEEEeCCCC--ccccceEEEecCCCCCCCCce--ECcccccCCCcc
Confidence            567889999999998753222222 222345678776554431  2345677788754    3443  333221111122


Q ss_pred             eEEEEe-CCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCc
Q 015251          282 YHLTVL-SGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGE  360 (410)
Q Consensus       282 ~~l~~~-~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  360 (410)
                      .+...+ +|++.++......+.|.|=-+... ...+.    +.+  ......           ......+..+.+..+|+
T Consensus       121 pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~-~~~~~----~~~--l~~~~~-----------~~~~nlYP~~~llPdG~  182 (243)
T PF07250_consen  121 PTATTLPDGRVLIVGGSNNPTYEFWPPKGPG-PGPVT----LPF--LSQTSD-----------TLPNNLYPFVHLLPDGN  182 (243)
T ss_pred             ccceECCCCCEEEEeCcCCCcccccCCccCC-CCcee----eec--chhhhc-----------cCccccCceEEEcCCCC
Confidence            233443 788888877655556655322111 11111    111  000000           00111344456678999


Q ss_pred             EEEEecCCEEEEEeCCCCcE-EEEEEeCCCCeEEEEEeecCccc
Q 015251          361 ILLEYKSRVLVSYDPKRRTF-NEFVFKGTPNWFQTIVHQGSFNW  403 (410)
Q Consensus       361 il~~~~~~~l~~yd~~~~~~-~~v~~~~~~~~~~~~~y~~slv~  403 (410)
                      |++..+.+ -..||.+++++ +.+  +..+...+..+...|-|-
T Consensus       183 lFi~an~~-s~i~d~~~n~v~~~l--P~lPg~~R~YP~sgssvm  223 (243)
T PF07250_consen  183 LFIFANRG-SIIYDYKTNTVVRTL--PDLPGGPRNYPASGSSVM  223 (243)
T ss_pred             EEEEEcCC-cEEEeCCCCeEEeeC--CCCCCCceecCCCcceEE
Confidence            99887755 56789999976 333  333333455555555443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=80.37  E-value=41  Score=29.72  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=24.5

Q ss_pred             EECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCC
Q 015251          236 LVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPD  273 (410)
Q Consensus       236 ~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~  273 (410)
                      .+||-+ ++...      ..++..|+.|+++..+|.|+
T Consensus         3 sCnGLl-c~~~~------~~~~V~NP~T~~~~~LP~~~   33 (230)
T TIGR01640         3 PCDGLI-CFSYG------KRLVVWNPSTGQSRWLPTPK   33 (230)
T ss_pred             ccceEE-EEecC------CcEEEECCCCCCEEecCCCC
Confidence            478888 55433      57999999999999998765

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	410
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	9e-08
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	9e-07
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	9e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-06
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	4e-04

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 47.2 bits (113), Expect = 9e-08
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 26 ETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64
          ++LP E++L I   L +  L++   VC+ W  LA D  L
Sbjct: 10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 49.3 bits (117), Expect = 9e-07
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 22 ATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64
          A+ +  LP ++ L+IL  L    L Q       W    +DP+L
Sbjct: 2  ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPIL 44

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 49.2 bits (116), Expect = 9e-07
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 16 EDDHQQATGMETLPREIVLHILLRLPITSLVQF-KFVCRAWRALAQDPLLANLH 68
          E++ +    +  LP  ++L +L  LP T LVQ  + VC  W+ L     L  L 
Sbjct: 42 EEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 9/128 (7%)

Query: 26  ETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILH 85
           ++LP E++L I   L +  L++   VC+ W  LA D  L    + T  +        +L 
Sbjct: 10  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLS 69

Query: 86  -------CDFPIRNQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGL--LCLSDSL 136
                  C     +Q     FS  + +    +            +  C+ L  L L    
Sbjct: 70  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 129

Query: 137 FNDAICIY 144
            +D I   
Sbjct: 130 LSDPIVNT 137

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 27 TLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64
           LP+E+ L++L  L    L+Q    CR WR LA+D LL
Sbjct: 21 LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	410
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.17
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.17
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.11
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.11
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.09
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.06
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.06
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.01
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.97
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.92
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.9
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.87
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.86
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.63
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.61
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.56
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.53
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.51
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.48
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.3
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.06
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.87
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.57
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.3
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	91.78
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	88.87
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	88.65
3jro_A	753	Fusion protein of protein transport protein SEC13	84.92
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	83.21
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	81.34

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.17  E-value=2.6e-08  Score=92.09  Aligned_cols=251  Identities=10%  Similarity=-0.010  Sum_probs=149.0

Q ss_pred             eEEEeecCCCCceEEEEeCCCCcccccccc-CCCCCCCCCeEEEeccCceEEEeecc---CCceEEEEcccccceeeCCC
Q 015251           81 CLILHCDFPIRNQLCFIDFSDNQDKVRKFN-MPFQAKMPEFDAVGSCNGLLCLSDSL---FNDAICIYNPFTRDYIELPK  156 (410)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~Gll~l~~~~---~~~~~~V~NP~T~~~~~LP~  156 (410)
                      .++++........+..+|+...  .+..++ .|.   ..........+|.|.+..+.   ....++++||.|++|..+|+
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~--~W~~~~~~p~---~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDY--SWTDIRCPFE---KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTT--EEEECCCCSC---CCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             eEEEEeCCCCCceEEEecCCCC--CEecCCCCCc---ccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            4444443322456777787532  333332 121   11122333456766554331   23579999999999999987


Q ss_pred             CCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCceeecCCCCceeecCCcceE
Q 015251          157 SMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEAL  236 (410)
Q Consensus       157 ~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~  236 (410)
                      .+..+.....+  .++     -+++.++....   ...         ....+++|+..+++|+.++.+|... ....++.
T Consensus        88 ~p~~r~~~~~~--~~~-----~~iyv~GG~~~---~~~---------~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~  147 (306)
T 3ii7_A           88 PPTPRDSLAAC--AAE-----GKIYTSGGSEV---GNS---------ALYLFECYDTRTESWHTKPSMLTQR-CSHGMVE  147 (306)
T ss_dssp             CSSCCBSCEEE--EET-----TEEEEECCBBT---TBS---------CCCCEEEEETTTTEEEEECCCSSCC-BSCEEEE
T ss_pred             CCccccceeEE--EEC-----CEEEEECCCCC---CCc---------EeeeEEEEeCCCCceEeCCCCcCCc-ceeEEEE
Confidence            66443222222  222     25666543221   111         1367999999999999998766543 3445678


Q ss_pred             ECCeEEEEecCCCCCC----CceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEeCCC--CeEEEEEEee
Q 015251          237 VKGRLHWVTRPRRYSP----VRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYGNY--GKLEIWVMKD  309 (410)
Q Consensus       237 ~~G~lyw~~~~~~~~~----~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~~~~--~~l~IW~l~~  309 (410)
                      ++|.+|.+........    ...+..||+.+++|..++ +|..    .....++.++|+|+++...+.  ..-++|+++-
T Consensus       148 ~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~  223 (306)
T 3ii7_A          148 ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA----RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDI  223 (306)
T ss_dssp             ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC----CBSCEEEEETTEEEEECCEETTEEBCCEEEEET
T ss_pred             ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccch----hhcceEEEECCEEEEEeCCCCCCCCceEEEeeC
Confidence            8999999986532222    567999999999999984 4432    224467788999998864322  1245777764


Q ss_pred             CCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec------CCEEEEEeCCCCcEEEE
Q 015251          310 YNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK------SRVLVSYDPKRRTFNEF  383 (410)
Q Consensus       310 ~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~------~~~l~~yd~~~~~~~~v  383 (410)
                      .  ...|...-.    +|...                 .......  -++.|++.-+      ...+..||+++++|+.+
T Consensus       224 ~--~~~W~~~~~----~p~~r-----------------~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  278 (306)
T 3ii7_A          224 K--LNEWKMVSP----MPWKG-----------------VTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDKWVAN  278 (306)
T ss_dssp             T--TTEEEECCC----CSCCB-----------------SCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred             C--CCcEEECCC----CCCCc-----------------cceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence            2  467987532    22110                 0111111  2566666532      24689999999999998


Q ss_pred             EE
Q 015251          384 VF  385 (410)
Q Consensus       384 ~~  385 (410)
                      .-
T Consensus       279 ~~  280 (306)
T 3ii7_A          279 SK  280 (306)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.17  E-value=1.7e-08  Score=93.81  Aligned_cols=202  Identities=11%  Similarity=0.014  Sum_probs=123.9

Q ss_pred             ceEEEEeCCCCccccccccCCCCCCCCCeEEEeccCceEEEeecc-----C-----CceEEEEcccccceeeCCCCCCCC
Q 015251           92 NQLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSL-----F-----NDAICIYNPFTRDYIELPKSMQYP  161 (410)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Gll~l~~~~-----~-----~~~~~V~NP~T~~~~~LP~~~~~~  161 (410)
                      ..+..+|+...  .+...+.|... ..........+|.|.+..+.     .     ...++++||.|++|..+|+.+..+
T Consensus        13 ~~~~~yd~~~~--~W~~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r   89 (315)
T 4asc_A           13 EGAVAYDPAAN--ECYCASLSSQV-PKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR   89 (315)
T ss_dssp             TEEEEEETTTT--EEEEEECCCCS-CSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred             CceEEECCCCC--eEecCCCCCCC-CccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence            46777777533  23222222211 12223344556666444331     1     124899999999999998866433


Q ss_pred             CCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeE
Q 015251          162 DQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRL  241 (410)
Q Consensus       162 ~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~l  241 (410)
                      .....+  .++     -+++.++...... ...         ....+++|+..+++|+.++.+|... ....++.++|.+
T Consensus        90 ~~~~~~--~~~-----~~lyv~GG~~~~~-~~~---------~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~i  151 (315)
T 4asc_A           90 CLFGLG--EAL-----NSIYVVGGREIKD-GER---------CLDSVMCYDRLSFKWGESDPLPYVV-YGHTVLSHMDLV  151 (315)
T ss_dssp             ESCEEE--EET-----TEEEEECCEESST-TCC---------BCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEE
T ss_pred             hceeEE--EEC-----CEEEEEeCCcCCC-CCc---------ccceEEEECCCCCcEeECCCCCCcc-cceeEEEECCEE
Confidence            222222  221     2566664432100 011         1368999999999999998766543 344567899999


Q ss_pred             EEEecC-CCCCCCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEeCCC--CeEEEEEEeeCCCCCcee
Q 015251          242 HWVTRP-RRYSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYGNY--GKLEIWVMKDYNVKESWA  317 (410)
Q Consensus       242 yw~~~~-~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~~~~--~~l~IW~l~~~~~~~~W~  317 (410)
                      |.+... ........+..||+.+++|..++ +|..    ......+.++|+|+++.....  ..-++|+++-.  ...|.
T Consensus       152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~  225 (315)
T 4asc_A          152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA----RSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSIT--DNKWA  225 (315)
T ss_dssp             EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC----CBSCEEEEETTEEEEEEEECSSSEEEEEEEEETT--TTEEE
T ss_pred             EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc----hhceEEEEECCEEEEEeccCCCCccceEEEEECC--CCeEE
Confidence            999865 22333568999999999999884 4432    223457788999999976432  23478888742  46899


Q ss_pred             eEE
Q 015251          318 KEL  320 (410)
Q Consensus       318 ~~~  320 (410)
                      ..-
T Consensus       226 ~~~  228 (315)
T 4asc_A          226 PFE  228 (315)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            864

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.11  E-value=3.3e-11  Score=80.57  Aligned_cols=45  Identities=31%  Similarity=0.533  Sum_probs=39.2

Q ss_pred             cCCCCCCCcHHHHHHHHccCCcccccceecccHhhHhhhCChhhh
Q 015251           21 QATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLA   65 (410)
Q Consensus        21 ~~~~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~   65 (410)
                      +...+..||+|++.+||++||++++.++++|||+|+.++.++.|-
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW   49 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence            345689999999999999999999999999999999999998764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.11  E-value=8.2e-08  Score=89.25  Aligned_cols=240  Identities=8%  Similarity=0.087  Sum_probs=142.7

Q ss_pred             eEEEEeCCCCccccccccCCCCCCCCCeEEEeccCceEEEeeccC----------CceEEEEcccccceeeCCCCCCCCC
Q 015251           93 QLCFIDFSDNQDKVRKFNMPFQAKMPEFDAVGSCNGLLCLSDSLF----------NDAICIYNPFTRDYIELPKSMQYPD  162 (410)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Gll~l~~~~~----------~~~~~V~NP~T~~~~~LP~~~~~~~  162 (410)
                      ....+|+...  .+...+.+... ......+...+|.|.+-.+..          ...++++||.|++|..+|+.+..+.
T Consensus        25 ~~~~yd~~~~--~W~~~~~~~~~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~  101 (318)
T 2woz_A           25 AAVAYDPMEN--ECYLTALAEQI-PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC  101 (318)
T ss_dssp             EEEEEETTTT--EEEEEEECTTS-CSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBC
T ss_pred             ceEEECCCCC--ceecccCCccC-CccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccc
Confidence            4566776532  33332222211 112234455667665543310          1238899999999999988665433


Q ss_pred             CceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEE
Q 015251          163 QEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLH  242 (410)
Q Consensus       163 ~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~ly  242 (410)
                      ...++  .++     -+++.++.....  ....         ...+++|+..+++|+.+..+|.... ...++..+|.+|
T Consensus       102 ~~~~~--~~~-----~~iyv~GG~~~~--~~~~---------~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iy  162 (318)
T 2woz_A          102 LFGLG--EVD-----DKIYVVAGKDLQ--TEAS---------LDSVLCYDPVAAKWSEVKNLPIKVY-GHNVISHNGMIY  162 (318)
T ss_dssp             SCEEE--EET-----TEEEEEEEEBTT--TCCE---------EEEEEEEETTTTEEEEECCCSSCEE-SCEEEEETTEEE
T ss_pred             ccceE--EEC-----CEEEEEcCccCC--CCcc---------cceEEEEeCCCCCEeECCCCCCccc-ccEEEEECCEEE
Confidence            22222  222     256666553311  1111         2579999999999999987765443 345677999999


Q ss_pred             EEecCC-CCCCCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEeCCCC--eEEEEEEeeCCCCCceee
Q 015251          243 WVTRPR-RYSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYGNYG--KLEIWVMKDYNVKESWAK  318 (410)
Q Consensus       243 w~~~~~-~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~--~l~IW~l~~~~~~~~W~~  318 (410)
                      .+.... .......+..||+.+++|..++ +|..    .....++.++|+|+++......  .-++|+++-.  ...|..
T Consensus       163 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~  236 (318)
T 2woz_A          163 CLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP----RSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLK--TNKWEV  236 (318)
T ss_dssp             EECCEESSSCBCCCEEEEETTTTEEEEECCCSSC----CBSCEEEEETTEEEEEEEEETTEEEEEEEEEETT--TCCEEE
T ss_pred             EEcCCCCCCCccceEEEEcCCCCEEEECCCCCCC----cccceEEEECCEEEEEcCcCCCCccceEEEEECC--CCeEEE
Confidence            997642 1223467999999999999984 3421    1234567889999999754322  3577877642  467988


Q ss_pred             EEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec---------------CCEEEEEeCCCCcEEEE
Q 015251          319 ELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK---------------SRVLVSYDPKRRTFNEF  383 (410)
Q Consensus       319 ~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~---------------~~~l~~yd~~~~~~~~v  383 (410)
                      ...+    |...                 .....  ..-++.|++.-+               ...+..||+++++|+.+
T Consensus       237 ~~~~----p~~r-----------------~~~~~--~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          237 MTEF----PQER-----------------SSISL--VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             CCCC----SSCC-----------------BSCEE--EEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             CCCC----CCcc-----------------cceEE--EEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            5422    2110                 00111  122456655421               24588999999999998

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.09  E-value=3.3e-11  Score=109.27  Aligned_cols=51  Identities=29%  Similarity=0.550  Sum_probs=47.2

Q ss_pred             ccCCCCCCCcHHHHHHHHccCCccccc-ceecccHhhHhhhCChhhhhhhhc
Q 015251           20 QQATGMETLPREIVLHILLRLPITSLV-QFKFVCRAWRALAQDPLLANLHNT   70 (410)
Q Consensus        20 ~~~~~~~~LP~Dll~eIL~rLP~~sl~-r~r~VcK~W~~li~s~~F~~~~~~   70 (410)
                      +.+..+..||+||+.+||+|||+++|+ ||++|||+|+++|+++.|.+.++.
T Consensus        46 ~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~   97 (297)
T 2e31_A           46 EAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQ   97 (297)
T ss_dssp             -CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHH
T ss_pred             ccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhh
Confidence            345678899999999999999999999 999999999999999999999986

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.06  E-value=6.6e-08  Score=89.01  Aligned_cols=212  Identities=8%  Similarity=0.056  Sum_probs=132.2

Q ss_pred             EeccCceEEEeecc----CCceEEEEcccccc---eeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcc
Q 015251          123 VGSCNGLLCLSDSL----FNDAICIYNPFTRD---YIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSF  195 (410)
Q Consensus       123 ~~s~~Gll~l~~~~----~~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~  195 (410)
                      ....+|.|.+..+.    ..+.++++||.|++   |..+|+.+..+....++  .++     -+++.++....    .. 
T Consensus        58 ~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~--~~~-----~~lyv~GG~~~----~~-  125 (301)
T 2vpj_A           58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT--TLG-----DMIYVSGGFDG----SR-  125 (301)
T ss_dssp             EEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE--EET-----TEEEEECCBCS----SC-
T ss_pred             EEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE--EEC-----CEEEEEcccCC----Cc-
Confidence            33456666554331    12479999999999   99998866543222222  222     25666543211    11 


Q ss_pred             ccccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEc-CCCC
Q 015251          196 QRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDC  274 (410)
Q Consensus       196 ~~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~  274 (410)
                              ....+++|+..+++|+.++.+|... .....+.++|.+|.+...........+..||+.+++|..++ +|..
T Consensus       126 --------~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~  196 (301)
T 2vpj_A          126 --------RHTSMERYDPNIDQWSMLGDMQTAR-EGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK  196 (301)
T ss_dssp             --------BCCEEEEEETTTTEEEEEEECSSCC-BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSC
T ss_pred             --------ccceEEEEcCCCCeEEECCCCCCCc-ccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcc
Confidence                    1257999999999999987666433 33456778999999976533333568999999999999984 4432


Q ss_pred             CCCCCcceEEEEeCCeEEEEEeCCCC--eEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEE
Q 015251          275 GGLNRCNYHLTVLSGCLSVAVYGNYG--KLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRV  352 (410)
Q Consensus       275 ~~~~~~~~~l~~~~G~L~~~~~~~~~--~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  352 (410)
                          .....++.++|+|+++......  .-+||.++-.  ...|...-.+    |...                 .....
T Consensus       197 ----r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~----p~~r-----------------~~~~~  249 (301)
T 2vpj_A          197 ----RSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIR--TDSWTTVTSM----TTPR-----------------CYVGA  249 (301)
T ss_dssp             ----CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT--TTEEEEECCC----SSCC-----------------BSCEE
T ss_pred             ----cccceEEEECCEEEEEeCCCCCcccceEEEEeCC--CCcEEECCCC----CCcc-----------------cceeE
Confidence                1234677889999998754321  3467776642  4679875422    2110                 01111


Q ss_pred             EEEccCCcEEEEecC------CEEEEEeCCCCcEEEEE
Q 015251          353 VCILEKGEILLEYKS------RVLVSYDPKRRTFNEFV  384 (410)
Q Consensus       353 ~~~~~~g~il~~~~~------~~l~~yd~~~~~~~~v~  384 (410)
                        ..-++.|++.-+.      ..+..||+++++|+.+.
T Consensus       250 --~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  285 (301)
T 2vpj_A          250 --TVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVT  285 (301)
T ss_dssp             --EEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEE
T ss_pred             --EEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcC
Confidence              1125666665321      46889999999999885

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.06  E-value=4e-08  Score=90.98  Aligned_cols=212  Identities=14%  Similarity=0.119  Sum_probs=133.1

Q ss_pred             eccCceEEEeecc--------CCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcc
Q 015251          124 GSCNGLLCLSDSL--------FNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSF  195 (410)
Q Consensus       124 ~s~~Gll~l~~~~--------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~  195 (410)
                      ...+|.|.+-.+.        ..+.++++||.|++|..+|+.+..+.....+  .++     -+++.++....    .. 
T Consensus        67 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~-----~~iyv~GG~~~----~~-  134 (308)
T 1zgk_A           67 CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG--VID-----GHIYAVGGSHG----CI-  134 (308)
T ss_dssp             EEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE--EET-----TEEEEECCEET----TE-
T ss_pred             EEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEE--EEC-----CEEEEEcCCCC----Cc-
Confidence            3446666554332        1246899999999999999866543222222  222     25666543221    10 


Q ss_pred             ccccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEc-CCCC
Q 015251          196 QRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDC  274 (410)
Q Consensus       196 ~~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~  274 (410)
                              ....+++|+..+++|+.+..+|.... ...++.++|.+|.+...........+..||+.+++|..++ +|..
T Consensus       135 --------~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  205 (308)
T 1zgk_A          135 --------HHNSVERYEPERDEWHLVAPMLTRRI-GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI  205 (308)
T ss_dssp             --------ECCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC
T ss_pred             --------ccccEEEECCCCCeEeECCCCCcccc-ceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc
Confidence                    12579999999999999987665432 3456778999999976533233568999999999999884 3321


Q ss_pred             CCCCCcceEEEEeCCeEEEEEeCCC--CeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEE
Q 015251          275 GGLNRCNYHLTVLSGCLSVAVYGNY--GKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRV  352 (410)
Q Consensus       275 ~~~~~~~~~l~~~~G~L~~~~~~~~--~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  352 (410)
                          .....++.++|+|+++.....  ..-++|+++-.  ...|.+...+..  |+.                   ....
T Consensus       206 ----r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~--~r~-------------------~~~~  258 (308)
T 1zgk_A          206 ----RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVE--TETWTFVAPMKH--RRS-------------------ALGI  258 (308)
T ss_dssp             ----CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT--TTEEEECCCCSS--CCB-------------------SCEE
T ss_pred             ----cccceEEEECCEEEEEeCCCCCCccceEEEEeCC--CCcEEECCCCCC--Ccc-------------------ceEE
Confidence                123457778999998875422  24567777642  467987542211  110                   1111


Q ss_pred             EEEccCCcEEEEec------CCEEEEEeCCCCcEEEEEE
Q 015251          353 VCILEKGEILLEYK------SRVLVSYDPKRRTFNEFVF  385 (410)
Q Consensus       353 ~~~~~~g~il~~~~------~~~l~~yd~~~~~~~~v~~  385 (410)
                      +.  -++.|++.-+      ...+..||+++++|+.+.-
T Consensus       259 ~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~  295 (308)
T 1zgk_A          259 TV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR  295 (308)
T ss_dssp             EE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred             EE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCC
Confidence            11  2566666532      2468999999999998854

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.01  E-value=5.8e-08  Score=89.49  Aligned_cols=211  Identities=12%  Similarity=0.104  Sum_probs=132.0

Q ss_pred             eccCceEEEeecc----CCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccccc
Q 015251          124 GSCNGLLCLSDSL----FNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTR  199 (410)
Q Consensus       124 ~s~~Gll~l~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~  199 (410)
                      ...+|.|.+..+.    ....++++||.|++|..+|+.+..+....++  .++     -+++.++....    ...    
T Consensus        58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~-----~~iyv~GG~~~----~~~----  122 (302)
T 2xn4_A           58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA--VLN-----GLLYAVGGFDG----STG----  122 (302)
T ss_dssp             EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EET-----TEEEEEEEECS----SCE----
T ss_pred             EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE--EEC-----CEEEEEcCCCC----Ccc----
Confidence            3446766554331    1247899999999999999866543322222  222     25666654322    110    


Q ss_pred             ccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCC--CCceEEEEEcCCceeeEEc-CCCCCC
Q 015251          200 RVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYS--PVRGIVSFDIADEQFREVP-KPDCGG  276 (410)
Q Consensus       200 ~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~--~~~~Il~fDl~~e~~~~i~-lP~~~~  276 (410)
                           ...+++|+..+++|+.++.+|... .....+.++|.+|.+.......  ....+..||+.+++|..++ +|..  
T Consensus       123 -----~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--  194 (302)
T 2xn4_A          123 -----LSSVEAYNIKSNEWFHVAPMNTRR-SSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR--  194 (302)
T ss_dssp             -----EEEEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC--
T ss_pred             -----CceEEEEeCCCCeEeecCCCCCcc-cCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc--
Confidence                 257999999999999998766543 3345677899999997652111  1467999999999999883 4422  


Q ss_pred             CCCcceEEEEeCCeEEEEEeCCC--CeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEE
Q 015251          277 LNRCNYHLTVLSGCLSVAVYGNY--GKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVC  354 (410)
Q Consensus       277 ~~~~~~~l~~~~G~L~~~~~~~~--~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (410)
                        .....++.++|+|+++...+.  ..-++|+++-.  ...|.....+..  ++.                   ....  
T Consensus       195 --r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~--~r~-------------------~~~~--  247 (302)
T 2xn4_A          195 --RSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPT--TNAWRQVADMNM--CRR-------------------NAGV--  247 (302)
T ss_dssp             --CBSCEEEEETTEEEEECCBSSSSBCCCEEEEETT--TTEEEEECCCSS--CCB-------------------SCEE--
T ss_pred             --cccccEEEECCEEEEECCCCCCcccceEEEEeCC--CCCEeeCCCCCC--ccc-------------------cCeE--
Confidence              123467788999999875432  13467777642  467987542211  110                   1111  


Q ss_pred             EccCCcEEEEec------CCEEEEEeCCCCcEEEEE
Q 015251          355 ILEKGEILLEYK------SRVLVSYDPKRRTFNEFV  384 (410)
Q Consensus       355 ~~~~g~il~~~~------~~~l~~yd~~~~~~~~v~  384 (410)
                      ..-++.|++.-+      ...+..||+++++|+.+.
T Consensus       248 ~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  283 (302)
T 2xn4_A          248 CAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS  283 (302)
T ss_dssp             EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred             EEECCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence            112566666532      135899999999999874

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.97  E-value=4.7e-08  Score=90.32  Aligned_cols=196  Identities=13%  Similarity=0.103  Sum_probs=125.0

Q ss_pred             CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCc
Q 015251          138 NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPA  217 (410)
Q Consensus       138 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~  217 (410)
                      ...++++||.|++|..+++.+..+.....+  .++    . +++.++...     ..         ....+++|+..+++
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~----~-~lyv~GG~~-----~~---------~~~~~~~~d~~~~~   81 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWD----N-VVYILGGSQ-----LF---------PIKRMDCYNVVKDS   81 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEE--EET----T-EEEEECCBS-----SS---------BCCEEEEEETTTTE
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEE--EEC----C-EEEEEeCCC-----CC---------CcceEEEEeCCCCe
Confidence            458999999999999998866543322222  222    2 455553211     00         13689999999999


Q ss_pred             eeecCCCCceeecCCcceEECCeEEEEecCC-CCCCCceEEEEEcCCceeeEE-cCCCCCCCCCcceEEEEeCCeEEEEE
Q 015251          218 WRSKGKLAYQFVRRPSEALVKGRLHWVTRPR-RYSPVRGIVSFDIADEQFREV-PKPDCGGLNRCNYHLTVLSGCLSVAV  295 (410)
Q Consensus       218 Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~-~~~~~~~Il~fDl~~e~~~~i-~lP~~~~~~~~~~~l~~~~G~L~~~~  295 (410)
                      |+.++.+|... ....++.++|.+|.+.... .......+..||+.+.+|..+ ++|..    .....++.++|+|+++.
T Consensus        82 W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~----r~~~~~~~~~~~iyv~G  156 (306)
T 3ii7_A           82 WYSKLGPPTPR-DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ----RCSHGMVEANGLIYVCG  156 (306)
T ss_dssp             EEEEECCSSCC-BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC----CBSCEEEEETTEEEEEC
T ss_pred             EEECCCCCccc-cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC----cceeEEEEECCEEEEEC
Confidence            99998766543 3345667899999998653 233456899999999999988 34432    12345677899999886


Q ss_pred             eCC--CC----eEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec---
Q 015251          296 YGN--YG----KLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK---  366 (410)
Q Consensus       296 ~~~--~~----~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~---  366 (410)
                      ...  ..    .-++|+++-.  ...|...-.    +|...                 .....+  .-++.|++.-+   
T Consensus       157 G~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~----~p~~r-----------------~~~~~~--~~~~~i~v~GG~~~  211 (306)
T 3ii7_A          157 GSLGNNVSGRVLNSCEVYDPA--TETWTELCP----MIEAR-----------------KNHGLV--FVKDKIFAVGGQNG  211 (306)
T ss_dssp             CEESCTTTCEECCCEEEEETT--TTEEEEECC----CSSCC-----------------BSCEEE--EETTEEEEECCEET
T ss_pred             CCCCCCCcccccceEEEeCCC--CCeEEECCC----ccchh-----------------hcceEE--EECCEEEEEeCCCC
Confidence            431  11    4567777642  467987642    22110                 011111  12556655421   


Q ss_pred             ---CCEEEEEeCCCCcEEEEE
Q 015251          367 ---SRVLVSYDPKRRTFNEFV  384 (410)
Q Consensus       367 ---~~~l~~yd~~~~~~~~v~  384 (410)
                         ...+..||+++++|+.+.
T Consensus       212 ~~~~~~~~~yd~~~~~W~~~~  232 (306)
T 3ii7_A          212 LGGLDNVEYYDIKLNEWKMVS  232 (306)
T ss_dssp             TEEBCCEEEEETTTTEEEECC
T ss_pred             CCCCceEEEeeCCCCcEEECC
Confidence               145899999999999875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.92  E-value=2e-07  Score=85.83  Aligned_cols=196  Identities=13%  Similarity=0.093  Sum_probs=124.5

Q ss_pred             ceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCc-
Q 015251          139 DAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPA-  217 (410)
Q Consensus       139 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~-  217 (410)
                      ..++++||.|++|..+|+.+..+.....+  ..+     -+++.++....    ..         ....+++|+..+++ 
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~-----~~l~v~GG~~~----~~---------~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASV--SLH-----DRIYVIGGYDG----RS---------RLSSVECLDYTADED   90 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEE--EET-----TEEEEECCBCS----SC---------BCCCEEEEETTCCTT
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEE--EEC-----CEEEEEcCCCC----Cc---------cCceEEEEECCCCCC
Confidence            57899999999999998765433222221  222     25655543211    11         13579999999999 


Q ss_pred             --eeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEE
Q 015251          218 --WRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVA  294 (410)
Q Consensus       218 --Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~  294 (410)
                        |+.++.+|... .....+.++|.+|.+...........+..||+.+.+|..++ +|..    ......+.++|+|+++
T Consensus        91 ~~W~~~~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~----r~~~~~~~~~~~iyv~  165 (301)
T 2vpj_A           91 GVWYSVAPMNVRR-GLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA----REGAGLVVASGVIYCL  165 (301)
T ss_dssp             CCCEEECCCSSCC-BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC----CBSCEEEEETTEEEEE
T ss_pred             CeeEECCCCCCCc-cceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC----cccceEEEECCEEEEE
Confidence              99998766543 33456778999999986533233468999999999999883 4432    1234567789999988


Q ss_pred             EeCCC--CeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec------
Q 015251          295 VYGNY--GKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK------  366 (410)
Q Consensus       295 ~~~~~--~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~------  366 (410)
                      .....  ..-++|+++-.  ...|...-.    +|....                 ....  ..-++.|++.-+      
T Consensus       166 GG~~~~~~~~~~~~~d~~--~~~W~~~~~----~p~~r~-----------------~~~~--~~~~~~i~v~GG~~~~~~  220 (301)
T 2vpj_A          166 GGYDGLNILNSVEKYDPH--TGHWTNVTP----MATKRS-----------------GAGV--ALLNDHIYVVGGFDGTAH  220 (301)
T ss_dssp             CCBCSSCBCCCEEEEETT--TTEEEEECC----CSSCCB-----------------SCEE--EEETTEEEEECCBCSSSB
T ss_pred             CCCCCCcccceEEEEeCC--CCcEEeCCC----CCcccc-----------------cceE--EEECCEEEEEeCCCCCcc
Confidence            65422  23457777642  468987632    221100                 1111  112456665532      


Q ss_pred             CCEEEEEeCCCCcEEEEE
Q 015251          367 SRVLVSYDPKRRTFNEFV  384 (410)
Q Consensus       367 ~~~l~~yd~~~~~~~~v~  384 (410)
                      ...+..||+++++|+.+.
T Consensus       221 ~~~v~~yd~~~~~W~~~~  238 (301)
T 2vpj_A          221 LSSVEAYNIRTDSWTTVT  238 (301)
T ss_dssp             CCCEEEEETTTTEEEEEC
T ss_pred             cceEEEEeCCCCcEEECC
Confidence            246899999999999885

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.90  E-value=6.5e-08  Score=91.42  Aligned_cols=180  Identities=12%  Similarity=-0.015  Sum_probs=109.2

Q ss_pred             EeccCceEEEeeccCCceEEEEccc--ccceeeCCCCC-CCCCCceEEEEEEeCCCCCeEEEEEEEEec-CCCCCccccc
Q 015251          123 VGSCNGLLCLSDSLFNDAICIYNPF--TRDYIELPKSM-QYPDQEVVFGFGFHPVSKEYKVIKIVYYRK-SCSNSSFQRT  198 (410)
Q Consensus       123 ~~s~~Gll~l~~~~~~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~-~~~~~~~~~~  198 (410)
                      .+..+|.|.+..+...+.++++||.  +++|..+|+.+ ..+....++  .++     =+++.++.... ......    
T Consensus        15 ~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~--~~~-----~~lyv~GG~~~~~~~~~~----   83 (357)
T 2uvk_A           15 GAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSA--FID-----GNLYVFGGIGKNSEGLTQ----   83 (357)
T ss_dssp             EEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEE--EET-----TEEEEECCEEECTTSCEE----
T ss_pred             EEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEE--EEC-----CEEEEEcCCCCCCCccce----
Confidence            3444777766554445689999998  49999998866 333222222  222     25666644311 000000    


Q ss_pred             cccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCC----------------------------
Q 015251          199 RRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRY----------------------------  250 (410)
Q Consensus       199 ~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~----------------------------  250 (410)
                           ....+++|+..+++|+.+..++........++..+|.+|.+......                            
T Consensus        84 -----~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (357)
T 2uvk_A           84 -----VFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD  158 (357)
T ss_dssp             -----ECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             -----eeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence                 13679999999999999987651122233456799999999865211                            


Q ss_pred             ------CCCceEEEEEcCCceeeEE-cCCCCCCCCCcceEEEEeCCeEEEEEeCC---CCeEEEEEEeeCCCCCceeeEE
Q 015251          251 ------SPVRGIVSFDIADEQFREV-PKPDCGGLNRCNYHLTVLSGCLSVAVYGN---YGKLEIWVMKDYNVKESWAKEL  320 (410)
Q Consensus       251 ------~~~~~Il~fDl~~e~~~~i-~lP~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~l~IW~l~~~~~~~~W~~~~  320 (410)
                            .....+..||+.+++|..+ ++|...   .....++.++|+|+++....   ...-++|.++-......|....
T Consensus       159 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~---~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~  235 (357)
T 2uvk_A          159 KKAEDYFFNKFLLSFDPSTQQWSYAGESPWYG---TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA  235 (357)
T ss_dssp             SCGGGGCCCCEEEEEETTTTEEEEEEECSSCC---CBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECC
T ss_pred             ccccccCCcccEEEEeCCCCcEEECCCCCCCC---cccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecC
Confidence                  1236899999999999988 445321   11246788899999886421   1234677765211246798754


Q ss_pred             E
Q 015251          321 N  321 (410)
Q Consensus       321 ~  321 (410)
                      .
T Consensus       236 ~  236 (357)
T 2uvk_A          236 P  236 (357)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.87  E-value=2.2e-07  Score=85.63  Aligned_cols=196  Identities=11%  Similarity=0.098  Sum_probs=123.4

Q ss_pred             ceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCce
Q 015251          139 DAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAW  218 (410)
Q Consensus       139 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~W  218 (410)
                      ..+.++||.+++|..+++.+..+....++  .++     -+++.++....    ..         ....+++|+..+++|
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~-----~~lyv~GG~~~----~~---------~~~~~~~~d~~~~~W   89 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMV--YMA-----GLVFAVGGFNG----SL---------RVRTVDSYDPVKDQW   89 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEE--EET-----TEEEEESCBCS----SS---------BCCCEEEEETTTTEE
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEE--EEC-----CEEEEEeCcCC----Cc---------cccceEEECCCCCce
Confidence            47899999999999998765433222222  221     24555533211    11         125789999999999


Q ss_pred             eecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEeC
Q 015251          219 RSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYG  297 (410)
Q Consensus       219 r~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~~  297 (410)
                      +.++.+|... .....+.++|.+|.+...........+..||+.+.+|..++ +|..    ......+.++|+|+++...
T Consensus        90 ~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~----r~~~~~~~~~~~iyv~GG~  164 (302)
T 2xn4_A           90 TSVANMRDRR-STLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR----RSSVGVGVVGGLLYAVGGY  164 (302)
T ss_dssp             EEECCCSSCC-BSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC----CBSCEEEEETTEEEEECCE
T ss_pred             eeCCCCCccc-cceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc----ccCceEEEECCEEEEEeCC
Confidence            9998766543 23456778999999986532233467999999999999984 3421    1234567789999988643


Q ss_pred             CCC----eEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec------C
Q 015251          298 NYG----KLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK------S  367 (410)
Q Consensus       298 ~~~----~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~------~  367 (410)
                      ...    .-++|..+-.  ...|...-.    +|...                 ..... + .-++.|++.-+      .
T Consensus       165 ~~~~~~~~~~~~~yd~~--~~~W~~~~~----~p~~r-----------------~~~~~-~-~~~~~iyv~GG~~~~~~~  219 (302)
T 2xn4_A          165 DVASRQCLSTVECYNAT--TNEWTYIAE----MSTRR-----------------SGAGV-G-VLNNLLYAVGGHDGPLVR  219 (302)
T ss_dssp             ETTTTEECCCEEEEETT--TTEEEEECC----CSSCC-----------------BSCEE-E-EETTEEEEECCBSSSSBC
T ss_pred             CCCCCccccEEEEEeCC--CCcEEECCC----Ccccc-----------------ccccE-E-EECCEEEEECCCCCCccc
Confidence            211    3457777642  467998632    22110                 01111 1 12466665532      2


Q ss_pred             CEEEEEeCCCCcEEEEE
Q 015251          368 RVLVSYDPKRRTFNEFV  384 (410)
Q Consensus       368 ~~l~~yd~~~~~~~~v~  384 (410)
                      ..+..||+++++|+.+.
T Consensus       220 ~~~~~yd~~~~~W~~~~  236 (302)
T 2xn4_A          220 KSVEVYDPTTNAWRQVA  236 (302)
T ss_dssp             CCEEEEETTTTEEEEEC
T ss_pred             ceEEEEeCCCCCEeeCC
Confidence            46899999999999876

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.86  E-value=1.2e-07  Score=87.79  Aligned_cols=201  Identities=11%  Similarity=0.048  Sum_probs=123.5

Q ss_pred             CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCc
Q 015251          138 NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPA  217 (410)
Q Consensus       138 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~  217 (410)
                      ...++++||.|++|..+++.+..+.....+  ..+     -+++.++..........         ....+++|+..+++
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~-----~~lyv~GG~~~~~~~~~---------~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGC--VVG-----GLLYAVGGRNNSPDGNT---------DSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEE--EET-----TEEEEECCEEEETTEEE---------ECCCEEEEETTTTE
T ss_pred             cceEEEEcCCCCeEeECCCCCcccccceEE--EEC-----CEEEEECCCcCCCCCCe---------ecceEEEECCCCCe
Confidence            357899999999999998766543222222  221     24555533210000000         12579999999999


Q ss_pred             eeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEE-cCCCCCCCCCcceEEEEeCCeEEEEEe
Q 015251          218 WRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREV-PKPDCGGLNRCNYHLTVLSGCLSVAVY  296 (410)
Q Consensus       218 Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i-~lP~~~~~~~~~~~l~~~~G~L~~~~~  296 (410)
                      |+.++.+|... .....+.++|.+|.+...........+..||+.+.+|..+ ++|..    ......+.++|+|+++..
T Consensus       102 W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r~~~~~~~~~~~iyv~GG  176 (308)
T 1zgk_A          102 WSPCAPMSVPR-NRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR----RIGVGVAVLNRLLYAVGG  176 (308)
T ss_dssp             EEECCCCSSCC-BTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC----CBSCEEEEETTEEEEECC
T ss_pred             EeECCCCCcCc-cccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc----ccceEEEEECCEEEEEeC
Confidence            99998766543 3345677899999997642222235799999999999988 44432    123456778999999875


Q ss_pred             CCC--CeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec------CC
Q 015251          297 GNY--GKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK------SR  368 (410)
Q Consensus       297 ~~~--~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~------~~  368 (410)
                      ...  ..-++|.++-.  ...|...-.    +|...                 .....+.  -++.|++.-+      ..
T Consensus       177 ~~~~~~~~~~~~yd~~--~~~W~~~~~----~p~~r-----------------~~~~~~~--~~~~iyv~GG~~~~~~~~  231 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPE--RNEWRMITA----MNTIR-----------------SGAGVCV--LHNCIYAAGGYDGQDQLN  231 (308)
T ss_dssp             BCSSCBCCCEEEEETT--TTEEEECCC----CSSCC-----------------BSCEEEE--ETTEEEEECCBCSSSBCC
T ss_pred             CCCCCcCceEEEEeCC--CCeEeeCCC----CCCcc-----------------ccceEEE--ECCEEEEEeCCCCCCccc
Confidence            422  13456776642  467987532    22110                 0111111  2566665532      24


Q ss_pred             EEEEEeCCCCcEEEEE
Q 015251          369 VLVSYDPKRRTFNEFV  384 (410)
Q Consensus       369 ~l~~yd~~~~~~~~v~  384 (410)
                      .+..||+++++|+.+.
T Consensus       232 ~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          232 SVERYDVETETWTFVA  247 (308)
T ss_dssp             CEEEEETTTTEEEECC
T ss_pred             eEEEEeCCCCcEEECC
Confidence            6899999999999875

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.63  E-value=2.1e-06  Score=79.57  Aligned_cols=171  Identities=13%  Similarity=0.123  Sum_probs=112.1

Q ss_pred             EeccCceEEEeecc-------CCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcc
Q 015251          123 VGSCNGLLCLSDSL-------FNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSF  195 (410)
Q Consensus       123 ~~s~~Gll~l~~~~-------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~  195 (410)
                      ....+|.|.+..+.       ..+.++++||.|++|..+++.+..+....++  .++     -+++.++....   ... 
T Consensus        94 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~-----~~iyv~GG~~~---~~~-  162 (315)
T 4asc_A           94 LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL--SHM-----DLVYVIGGKGS---DRK-  162 (315)
T ss_dssp             EEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EET-----TEEEEECCBCT---TSC-
T ss_pred             EEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE--EEC-----CEEEEEeCCCC---CCc-
Confidence            34457776554331       1257999999999999998866543222222  232     25666643211   111 


Q ss_pred             ccccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEc-CCCC
Q 015251          196 QRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDC  274 (410)
Q Consensus       196 ~~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~  274 (410)
                              ....+++|+..+++|+.++.+|... ....++.++|.+|.+...........+.+||+.+++|..++ +|..
T Consensus       163 --------~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  233 (315)
T 4asc_A          163 --------CLNKMCVYDPKKFEWKELAPMQTAR-SLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE  233 (315)
T ss_dssp             --------BCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC
T ss_pred             --------ccceEEEEeCCCCeEEECCCCCCch-hceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc
Confidence                    1368999999999999998766543 34456788999999986532223468999999999999984 3321


Q ss_pred             CCCCCcceEEEEeCCeEEEEEeCC-----------CCeEEEEEEeeCCCCCceeeE
Q 015251          275 GGLNRCNYHLTVLSGCLSVAVYGN-----------YGKLEIWVMKDYNVKESWAKE  319 (410)
Q Consensus       275 ~~~~~~~~~l~~~~G~L~~~~~~~-----------~~~l~IW~l~~~~~~~~W~~~  319 (410)
                          .....++.++|+|+++...+           ...-+||+.+-.  ...|++.
T Consensus       234 ----r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~  283 (315)
T 4asc_A          234 ----RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEE--EKKWEGV  283 (315)
T ss_dssp             ----CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT--TTEEEEE
T ss_pred             ----ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCC--CChhhhh
Confidence                12346788899999987532           123578888752  4689987

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.61  E-value=5.7e-06  Score=77.91  Aligned_cols=257  Identities=11%  Similarity=0.065  Sum_probs=135.2

Q ss_pred             ceEEEEeCCCCcccccccc-CCCCCCCCCeEEEeccCceEEEeecc---------CCceEEEEcccccceeeCCCCC-CC
Q 015251           92 NQLCFIDFSDNQDKVRKFN-MPFQAKMPEFDAVGSCNGLLCLSDSL---------FNDAICIYNPFTRDYIELPKSM-QY  160 (410)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~Gll~l~~~~---------~~~~~~V~NP~T~~~~~LP~~~-~~  160 (410)
                      ..++.+|+......|..++ .|..+  ......+..+|.|.+..+.         ..+.++++||.|++|..+++.+ ..
T Consensus        31 ~~~~~~d~~~~~~~W~~~~~~p~~~--R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~  108 (357)
T 2uvk_A           31 TAWYKLDTQAKDKKWTALAAFPGGP--RDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMG  108 (357)
T ss_dssp             TCEEEEETTSSSCCEEECCCCTTCC--CBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSC
T ss_pred             CeEEEEccccCCCCeeECCCCCCCc--CccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcc
Confidence            4677778753222343332 12111  1122334456766554332         1246899999999999998755 32


Q ss_pred             CCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCc---------------------cccccccccCCceEEEEEeCCCcee
Q 015251          161 PDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSS---------------------FQRTRRVIYPRSDVQVYTVGSPAWR  219 (410)
Q Consensus       161 ~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~Vyss~t~~Wr  219 (410)
                      +. ... +..++     =+++.++.......++.                     +............+++|+..+++|+
T Consensus       109 r~-~~~-~~~~~-----~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  181 (357)
T 2uvk_A          109 MA-GHV-TFVHN-----GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWS  181 (357)
T ss_dssp             CS-SEE-EEEET-----TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEE
T ss_pred             cc-cce-EEEEC-----CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEE
Confidence            22 221 12232     25666643211000000                     0000000001258999999999999


Q ss_pred             ecCCCCceeecCCcceEECCeEEEEecCCC-CCCCceEEEEEc--CCceeeEE-cCCCCCCCCCcceEEEEeCCeEEEEE
Q 015251          220 SKGKLAYQFVRRPSEALVKGRLHWVTRPRR-YSPVRGIVSFDI--ADEQFREV-PKPDCGGLNRCNYHLTVLSGCLSVAV  295 (410)
Q Consensus       220 ~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~-~~~~~~Il~fDl--~~e~~~~i-~lP~~~~~~~~~~~l~~~~G~L~~~~  295 (410)
                      .+..+|.........+.++|.+|.+..... ......+..||+  .+.+|..+ ++|....  .....++..+|+|+++.
T Consensus       182 ~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~iyv~G  259 (357)
T 2uvk_A          182 YAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG--VAGGFAGISNDSLIFAG  259 (357)
T ss_dssp             EEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC--CBSCEEEEETTEEEEEC
T ss_pred             ECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc--cccceEEEECCEEEEEc
Confidence            997766543333567788999999975421 112356888887  88999987 3432211  12345788999999886


Q ss_pred             eCC-------------------CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEc
Q 015251          296 YGN-------------------YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCIL  356 (410)
Q Consensus       296 ~~~-------------------~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (410)
                      ...                   ....++|+++-.  ...|.+.-.+..  |+.                   ...  ++.
T Consensus       260 G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~--~r~-------------------~~~--~~~  314 (357)
T 2uvk_A          260 GAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDKSGELSQ--GRA-------------------YGV--SLP  314 (357)
T ss_dssp             CEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSS--CCB-------------------SSE--EEE
T ss_pred             CccccCCcccccccceeccccccceeeEEEEecC--CCceeeCCCCCC--Ccc-------------------cce--eEE
Confidence            521                   112466776642  467998654322  110                   011  122


Q ss_pred             cCCcEEEEec---C----CEEEEEeCCCCcEEEEE
Q 015251          357 EKGEILLEYK---S----RVLVSYDPKRRTFNEFV  384 (410)
Q Consensus       357 ~~g~il~~~~---~----~~l~~yd~~~~~~~~v~  384 (410)
                      -++.|++.-+   .    ..+..++++++++.+..
T Consensus       315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            3566665422   1    35788999999987653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.56  E-value=0.00013  Score=70.60  Aligned_cols=50  Identities=36%  Similarity=0.464  Sum_probs=44.9

Q ss_pred             ccCCCCCCCcHHHHHHHHccCCcccccceecccHhhHhhhCChhhhhhhh
Q 015251           20 QQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHN   69 (410)
Q Consensus        20 ~~~~~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~   69 (410)
                      .....+..||+|++..||++|++++|+++.+|||+|+.++.++.+-+...
T Consensus        14 ~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~   63 (445)
T 2ovr_B           14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC   63 (445)
T ss_dssp             CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             ccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence            34567889999999999999999999999999999999999988776655

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.53  E-value=0.00013  Score=70.66  Aligned_cols=41  Identities=22%  Similarity=0.349  Sum_probs=37.7

Q ss_pred             CCCCCCcHHHHHHHHccCCcccccceecccHhhHhhhCC-hh
Q 015251           23 TGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQD-PL   63 (410)
Q Consensus        23 ~~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s-~~   63 (410)
                      ..+..||+|++.+||+.||+++|+++..|||+|+.++.+ +.
T Consensus        13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~   54 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTS   54 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHH
T ss_pred             CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHH
Confidence            456789999999999999999999999999999999988 54

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.51  E-value=2.7e-06  Score=78.89  Aligned_cols=171  Identities=15%  Similarity=0.192  Sum_probs=109.9

Q ss_pred             EeccCceEEEeeccC------CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccc
Q 015251          123 VGSCNGLLCLSDSLF------NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQ  196 (410)
Q Consensus       123 ~~s~~Gll~l~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~  196 (410)
                      .+..+|-|.+..+..      ...++++||.|.+|..+++.+..+....++  .++     -+++.++....   ...  
T Consensus       105 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~-----~~iyv~GG~~~---~~~--  172 (318)
T 2woz_A          105 LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVI--SHN-----GMIYCLGGKTD---DKK--  172 (318)
T ss_dssp             EEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEE--EET-----TEEEEECCEES---SSC--
T ss_pred             eEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEE--EEC-----CEEEEEcCCCC---CCC--
Confidence            344567665543321      146899999999999998755432221211  222     25666643321   111  


Q ss_pred             cccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEc-CCCCC
Q 015251          197 RTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDCG  275 (410)
Q Consensus       197 ~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~  275 (410)
                             ....+++|+..+++|+.++.+|... ....++.++|.+|.+...........+..||+.+++|..++ +|.. 
T Consensus       173 -------~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-  243 (318)
T 2woz_A          173 -------CTNRVFIYNPKKGDWKDLAPMKTPR-SMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE-  243 (318)
T ss_dssp             -------BCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-
T ss_pred             -------ccceEEEEcCCCCEEEECCCCCCCc-ccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence                   1257999999999999998766443 23456788999999976522222357899999999999884 4432 


Q ss_pred             CCCCcceEEEEeCCeEEEEEeCCC-----------CeEEEEEEeeCCCCCceeeE
Q 015251          276 GLNRCNYHLTVLSGCLSVAVYGNY-----------GKLEIWVMKDYNVKESWAKE  319 (410)
Q Consensus       276 ~~~~~~~~l~~~~G~L~~~~~~~~-----------~~l~IW~l~~~~~~~~W~~~  319 (410)
                         .....++.++|+|+++.....           ..-+||+.+-.  +..|.+.
T Consensus       244 ---r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~  293 (318)
T 2woz_A          244 ---RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD--KKEWAGM  293 (318)
T ss_dssp             ---CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETT--TTEEEEE
T ss_pred             ---ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCC--CCEehhh
Confidence               123467888999998865321           23578888752  4689987

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.48  E-value=7.2e-06  Score=84.55  Aligned_cols=212  Identities=10%  Similarity=0.027  Sum_probs=123.6

Q ss_pred             cCceEEEeecc---CCceEEEEcccccceeeCC-C-----CCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccc
Q 015251          126 CNGLLCLSDSL---FNDAICIYNPFTRDYIELP-K-----SMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQ  196 (410)
Q Consensus       126 ~~Gll~l~~~~---~~~~~~V~NP~T~~~~~LP-~-----~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~  196 (410)
                      .+|.|.+..+.   ..+.++++||.|++|..++ +     .+..+.....+  .+..   +-+++.++....   .+.  
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~--~~~~---~~~lyv~GG~~~---~~~--  465 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFT--TISR---NNQLLLIGGRKA---PHQ--  465 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEE--EETT---TTEEEEECCBSS---TTC--
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEE--EEcc---CCEEEEEcCCCC---CCC--
Confidence            56666554432   2357999999999999987 4     22222111221  2210   124666643211   110  


Q ss_pred             cccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEE-CCeEEEEecCCCCCCCceEEEEEcCCceeeEEc----C
Q 015251          197 RTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALV-KGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP----K  271 (410)
Q Consensus       197 ~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~----l  271 (410)
                             ....+++|+..+++|+.++.+|.... ...++.+ +|.+|.+.......   .+..||+.+++|..++    +
T Consensus       466 -------~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~  534 (695)
T 2zwa_A          466 -------GLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEF  534 (695)
T ss_dssp             -------BCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCSSGG
T ss_pred             -------ccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCCCCC
Confidence                   12579999999999999987765432 3345554 99999998762211   8999999999999886    3


Q ss_pred             CCCCCCCCcceEEEEeC---CeEEEEEeCCC----CeEEEEEEeeCCCCCc------eeeEEEeccCcCcccccccCCcc
Q 015251          272 PDCGGLNRCNYHLTVLS---GCLSVAVYGNY----GKLEIWVMKDYNVKES------WAKELNIGAYIPKGLKQSLDRPL  338 (410)
Q Consensus       272 P~~~~~~~~~~~l~~~~---G~L~~~~~~~~----~~l~IW~l~~~~~~~~------W~~~~~i~~~~p~~~~~~~~~~~  338 (410)
                      |...    .....++++   |+|+++.....    ..-++|..+-.  ...      |........ .++          
T Consensus       535 p~~r----~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~--~~~w~~~~~W~~~~~~p~-~~R----------  597 (695)
T 2zwa_A          535 FQNS----LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD--AENATEPITVIKKLQHPL-FQR----------  597 (695)
T ss_dssp             GGSC----CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEEC--TTCSSCCEEEEEEEECGG-GCC----------
T ss_pred             CCcc----cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEcc--CCccccceEEEEcCCCCC-CCc----------
Confidence            4321    122334445   88988875421    23466766642  234      776554211 111          


Q ss_pred             hhhcccCCCceeEEEEEccCCcEEEEec---------CCEEEEEeCCCCcEEEEEE
Q 015251          339 KIWKNSLNGRVVRVVCILEKGEILLEYK---------SRVLVSYDPKRRTFNEFVF  385 (410)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~g~il~~~~---------~~~l~~yd~~~~~~~~v~~  385 (410)
                                ...-..+.+++.|++.-+         ...+..||+++++|+.+.+
T Consensus       598 ----------~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~  643 (695)
T 2zwa_A          598 ----------YGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPI  643 (695)
T ss_dssp             ----------BSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCC
T ss_pred             ----------ccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeec
Confidence                      111122333366666532         2458999999999996554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.30  E-value=9.8e-05  Score=71.23  Aligned_cols=42  Identities=31%  Similarity=0.534  Sum_probs=37.7

Q ss_pred             CCCCCCcHH----HHHHHHccCCcccccceecccHhhHhhhCChhh
Q 015251           23 TGMETLPRE----IVLHILLRLPITSLVQFKFVCRAWRALAQDPLL   64 (410)
Q Consensus        23 ~~~~~LP~D----ll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F   64 (410)
                      ..+..||+|    |+..||++|++++|+++.+|||+|+.++.++.+
T Consensus         9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~   54 (435)
T 1p22_A            9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML   54 (435)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTH
T ss_pred             ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHH
Confidence            456779999    999999999999999999999999999987643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.06  E-value=5.4e-05  Score=77.50  Aligned_cols=108  Identities=10%  Similarity=0.092  Sum_probs=71.5

Q ss_pred             eEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCcee
Q 015251          140 AICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWR  219 (410)
Q Consensus       140 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~Wr  219 (410)
                      .+.++||.|++|..++..+..+.. ...+.++..   +-+++.++...                 ...+++|+..+++|.
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~-~~~~~~~~~---~g~lyv~GG~~-----------------~~~v~~yd~~t~~W~  278 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDM-FCPGISMDG---NGQIVVTGGND-----------------AKKTSLYDSSSDSWI  278 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCC-SSCEEEECT---TSCEEEECSSS-----------------TTCEEEEEGGGTEEE
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCC-ccccccCCC---CCCEEEeCCCC-----------------CCceEEecCcCCcee
Confidence            688999999999998765433221 111222211   12455553211                 147999999999999


Q ss_pred             ecCCCCceeecCCcceEE-CCeEEEEecC-CCCCCCceEEEEEcCCceeeEE
Q 015251          220 SKGKLAYQFVRRPSEALV-KGRLHWVTRP-RRYSPVRGIVSFDIADEQFREV  269 (410)
Q Consensus       220 ~~~~~p~~~~~~~~~v~~-~G~lyw~~~~-~~~~~~~~Il~fDl~~e~~~~i  269 (410)
                      .+..++.... ...++.+ +|.+|.+... ........+..||+.+++|..+
T Consensus       279 ~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          279 PGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             ECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             ECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence            9987665432 2344566 9999999873 2222346799999999999987

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.87  E-value=2.4e-06  Score=76.60  Aligned_cols=49  Identities=27%  Similarity=0.361  Sum_probs=44.4

Q ss_pred             CCCCCCCcHHHHHHHHccCCcccccceecccHhhHhhhCChhhhhhhhc
Q 015251           22 ATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNT   70 (410)
Q Consensus        22 ~~~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~~   70 (410)
                      ++.+..||+|++..||+.|++++|+|+.+|||.||.++.++..=+.++.
T Consensus         2 ~~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~   50 (312)
T 3l2o_B            2 ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL   50 (312)
T ss_dssp             CCHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred             cchhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence            3457889999999999999999999999999999999999987777765

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.61  E-value=0.0013  Score=67.77  Aligned_cols=154  Identities=7%  Similarity=-0.007  Sum_probs=97.9

Q ss_pred             ceEEEEEeCCCceeecC-CC-----CceeecCCcceEE--CCeEEEEecCCCCC-CCceEEEEEcCCceeeEE-cCCCCC
Q 015251          206 SDVQVYTVGSPAWRSKG-KL-----AYQFVRRPSEALV--KGRLHWVTRPRRYS-PVRGIVSFDIADEQFREV-PKPDCG  275 (410)
Q Consensus       206 ~~~~Vyss~t~~Wr~~~-~~-----p~~~~~~~~~v~~--~G~lyw~~~~~~~~-~~~~Il~fDl~~e~~~~i-~lP~~~  275 (410)
                      ..+++|+..+++|..+. .+     |.. ......+.+  +|.+|.+....... ....+..||+.+.+|..+ ++|.. 
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~-R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~-  489 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVA-RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT-  489 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCC-CBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC-
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCcc-ccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC-
Confidence            57999999999999887 42     222 234556778  99999998763222 245799999999999988 34431 


Q ss_pred             CCCCcceEEEEe-CCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEE
Q 015251          276 GLNRCNYHLTVL-SGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVC  354 (410)
Q Consensus       276 ~~~~~~~~l~~~-~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (410)
                         ......+.+ +|+|+++....... ++|+.+-.  ...|.......- +|...                 .....+.
T Consensus       490 ---R~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~--t~~W~~~~~~g~-~p~~r-----------------~~~~a~v  545 (695)
T 2zwa_A          490 ---RFRHSACSLPDGNVLILGGVTEGP-AMLLYNVT--EEIFKDVTPKDE-FFQNS-----------------LVSAGLE  545 (695)
T ss_dssp             ---CBSCEEEECTTSCEEEECCBCSSC-SEEEEETT--TTEEEECCCSSG-GGGSC-----------------CBSCEEE
T ss_pred             ---cccceEEEEcCCEEEEECCCCCCC-CEEEEECC--CCceEEccCCCC-CCCcc-----------------cceeEEE
Confidence               123456665 99999987654444 88888752  467987543211 12110                 0111122


Q ss_pred             EccC-CcEEEEec--------CCEEEEEeCCCCc------EEEEEE
Q 015251          355 ILEK-GEILLEYK--------SRVLVSYDPKRRT------FNEFVF  385 (410)
Q Consensus       355 ~~~~-g~il~~~~--------~~~l~~yd~~~~~------~~~v~~  385 (410)
                      +..+ +.|++.-+        ...+..||+++++      |+.+.-
T Consensus       546 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~  591 (695)
T 2zwa_A          546 FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ  591 (695)
T ss_dssp             EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE
T ss_pred             EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC
Confidence            2222 55665432        1468999999999      887765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.57  E-value=2.2e-05  Score=73.11  Aligned_cols=45  Identities=31%  Similarity=0.533  Sum_probs=39.6

Q ss_pred             cCCCCCCCcHHHHHHHHccCCcccccceecccHhhHhhhCChhhh
Q 015251           21 QATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLA   65 (410)
Q Consensus        21 ~~~~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~   65 (410)
                      ....+..||+|++.+||.+|+.+++.+++.|||+|+.++.++...
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~   49 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTS
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhh
Confidence            356689999999999999999999999999999999999877643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.84  E-value=0.0042  Score=63.42  Aligned_cols=145  Identities=14%  Similarity=0.119  Sum_probs=85.5

Q ss_pred             EEEEeCCCceeecCCCCceeecCCcceEE--CCeEEEEecCCCC------CCCceEEEEEcCCceeeEEc-CCCCCCCCC
Q 015251          209 QVYTVGSPAWRSKGKLAYQFVRRPSEALV--KGRLHWVTRPRRY------SPVRGIVSFDIADEQFREVP-KPDCGGLNR  279 (410)
Q Consensus       209 ~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~--~G~lyw~~~~~~~------~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~  279 (410)
                      +.|+..+++|..+..+|..   ...++++  +|.+|.+......      .....+..||+.+.+|..++ +|... ...
T Consensus       169 ~~~dp~~~~W~~~~~~P~~---~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~-~~~  244 (656)
T 1k3i_A          169 TAPQPGLGRWGPTIDLPIV---PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH-DMF  244 (656)
T ss_dssp             CCCCTTSCEEEEEEECSSC---CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC-CCS
T ss_pred             ccCCCCCCeeeeeccCCCC---ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC-CCc
Confidence            3455567899987766652   1233445  9999999754211      11246899999999998763 33211 111


Q ss_pred             cceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCC
Q 015251          280 CNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKG  359 (410)
Q Consensus       280 ~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  359 (410)
                      .....+..+|+|+++......  ++|+.+-.  ...|.+.-.    ||..                  +...-.++..+|
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~--~v~~yd~~--t~~W~~~~~----~~~~------------------R~~~s~~~~~dg  298 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAK--KTSLYDSS--SDSWIPGPD----MQVA------------------RGYQSSATMSDG  298 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTT--CEEEEEGG--GTEEEECCC----CSSC------------------CSSCEEEECTTS
T ss_pred             cccccCCCCCCEEEeCCCCCC--ceEEecCc--CCceeECCC----CCcc------------------ccccceEEecCC
Confidence            111233468999988765444  45555532  357987532    2210                  011122334467


Q ss_pred             cEEEEec--C-----CEEEEEeCCCCcEEEE
Q 015251          360 EILLEYK--S-----RVLVSYDPKRRTFNEF  383 (410)
Q Consensus       360 ~il~~~~--~-----~~l~~yd~~~~~~~~v  383 (410)
                      +|++.-+  +     ..+..||+++++|+.+
T Consensus       299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          299 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             eEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence            7776543  1     3588999999999987

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.84  E-value=0.00028  Score=70.96  Aligned_cols=36  Identities=17%  Similarity=0.428  Sum_probs=29.6

Q ss_pred             CCCCCCcHHHHHHHHccCC-cccccceecccHhhHhh
Q 015251           23 TGMETLPREIVLHILLRLP-ITSLVQFKFVCRAWRAL   58 (410)
Q Consensus        23 ~~~~~LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~l   58 (410)
                      ..++.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4588999999999999999 99999999999999998

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.30  E-value=0.001  Score=66.81  Aligned_cols=35  Identities=11%  Similarity=0.302  Sum_probs=32.5

Q ss_pred             CCCCcHHHHHHHHccC-CcccccceecccHhhHhhh
Q 015251           25 METLPREIVLHILLRL-PITSLVQFKFVCRAWRALA   59 (410)
Q Consensus        25 ~~~LP~Dll~eIL~rL-P~~sl~r~r~VcK~W~~li   59 (410)
                      ...||||++.+||++| |.+++.+++.|||+|+.+.
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            4679999999999999 8999999999999999883

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=91.78  E-value=6.1  Score=34.38  Aligned_cols=193  Identities=10%  Similarity=-0.028  Sum_probs=96.4

Q ss_pred             EEeccCceEEEeeccCCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccccccc
Q 015251          122 AVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRV  201 (410)
Q Consensus       122 ~~~s~~Gll~l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~  201 (410)
                      +.-..+|.|.+... ....++++|| +++...+..+..   .....++.+|+..   ++... . ..             
T Consensus       104 i~~~~~g~l~v~~~-~~~~i~~~d~-~g~~~~~~~~~~---~~~~~~i~~~~~g---~l~v~-~-~~-------------  160 (299)
T 2z2n_A          104 ITEGPNGDIWFTEM-NGNRIGRITD-DGKIREYELPNK---GSYPSFITLGSDN---ALWFT-E-NQ-------------  160 (299)
T ss_dssp             EEECTTSCEEEEET-TTTEEEEECT-TCCEEEEECSST---TCCEEEEEECTTS---CEEEE-E-TT-------------
T ss_pred             eEECCCCCEEEEec-CCceEEEECC-CCCEEEecCCCC---CCCCceEEEcCCC---CEEEE-e-CC-------------
Confidence            43445777766543 2468999999 776665432211   1234567777643   22221 1 00             


Q ss_pred             ccCCceEEEEEeCCCceeecCCCCceeecCCcceEE--CCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCC
Q 015251          202 IYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALV--KGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNR  279 (410)
Q Consensus       202 ~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~  279 (410)
                         ...+.+|+. +++......... . ....++.+  +|.+|+....     .+.|..||. +.++..+.+|...   .
T Consensus       161 ---~~~i~~~~~-~g~~~~~~~~~~-~-~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~~~---~  225 (299)
T 2z2n_A          161 ---NNAIGRITE-SGDITEFKIPTP-A-SGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFKIPTPN---A  225 (299)
T ss_dssp             ---TTEEEEECT-TCCEEEEECSST-T-CCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEECSSTT---C
T ss_pred             ---CCEEEEEcC-CCcEEEeeCCCC-C-CcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEECCCCC---C
Confidence               145666776 666554311100 0 01112333  5787665543     368999999 7777766665311   1


Q ss_pred             cceEEEEe-CCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccC
Q 015251          280 CNYHLTVL-SGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEK  358 (410)
Q Consensus       280 ~~~~l~~~-~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (410)
                      ....+..- +|.|.+.... ...+.+|-.  .+   .   ...+..  +..                 .....-+.+ .+
T Consensus       226 ~~~~i~~~~~g~l~v~~~~-~~~i~~~d~--~g---~---~~~~~~--~~~-----------------~~~~~~i~~-~~  276 (299)
T 2z2n_A          226 RPHAITAGAGIDLWFTEWG-ANKIGRLTS--NN---I---IEEYPI--QIK-----------------SAEPHGICF-DG  276 (299)
T ss_dssp             CEEEEEECSTTCEEEEETT-TTEEEEEET--TT---E---EEEEEC--SSS-----------------SCCEEEEEE-CS
T ss_pred             CceeEEECCCCCEEEeccC-CceEEEECC--CC---c---eEEEeC--CCC-----------------CCccceEEe-cC
Confidence            12233332 5776655432 344544432  11   1   112211  110                 012334455 78


Q ss_pred             CcEEEEecCCEEEEEeCCCCcEE
Q 015251          359 GEILLEYKSRVLVSYDPKRRTFN  381 (410)
Q Consensus       359 g~il~~~~~~~l~~yd~~~~~~~  381 (410)
                      |.+++....+++..||+++++++
T Consensus       277 g~l~v~~~~~~l~~~~~~~~~~~  299 (299)
T 2z2n_A          277 ETIWFAMECDKIGKLTLIKDNME  299 (299)
T ss_dssp             SCEEEEETTTEEEEEEEC-----
T ss_pred             CCEEEEecCCcEEEEEcCcccCC
Confidence            89988876788999999988764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=88.87  E-value=8.3  Score=35.29  Aligned_cols=116  Identities=13%  Similarity=0.134  Sum_probs=63.9

Q ss_pred             CcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeE-EcCCCCCC-----CCCcceEEEEeCCeEEEEEeCCCCeEEEE
Q 015251          232 PSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFRE-VPKPDCGG-----LNRCNYHLTVLSGCLSVAVYGNYGKLEIW  305 (410)
Q Consensus       232 ~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~-i~lP~~~~-----~~~~~~~l~~~~G~L~~~~~~~~~~l~IW  305 (410)
                      ..++..+|.+|.....      +.|.+||.++.+... .+++....     ........+..+|.+++...  ..  .|.
T Consensus        47 ~~p~v~~~~v~~~~~~------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--~g--~l~  116 (376)
T 3q7m_A           47 LHPALADNVVYAADRA------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE--KA--QVY  116 (376)
T ss_dssp             CCCEEETTEEEEECTT------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET--TS--EEE
T ss_pred             eccEEECCEEEEEcCC------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC--CC--EEE
Confidence            3567889999987755      689999997655332 34432110     11112345556777766542  22  344


Q ss_pred             EEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEecCCEEEEEeCCCCcEEEE
Q 015251          306 VMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEF  383 (410)
Q Consensus       306 ~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~~l~~yd~~~~~~~~v  383 (410)
                      .++....+..|....  .-.    .                  ...|+.  .++.+++...++.++.||.++++...-
T Consensus       117 a~d~~tG~~~W~~~~--~~~----~------------------~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~  168 (376)
T 3q7m_A          117 ALNTSDGTVAWQTKV--AGE----A------------------LSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWT  168 (376)
T ss_dssp             EEETTTCCEEEEEEC--SSC----C------------------CSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEECCCCCEEEEEeC--CCc----e------------------EcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            555322256775532  110    0                  001111  246666667778899999988876543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=88.65  E-value=13  Score=33.37  Aligned_cols=195  Identities=9%  Similarity=0.016  Sum_probs=100.9

Q ss_pred             CceEEEeec---cCCceEEEEcccccceee-CCCC-CCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccccccc
Q 015251          127 NGLLCLSDS---LFNDAICIYNPFTRDYIE-LPKS-MQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRV  201 (410)
Q Consensus       127 ~Gll~l~~~---~~~~~~~V~NP~T~~~~~-LP~~-~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~  201 (410)
                      +|++.+..+   .....+.++||.|++... ++.. ....-.....++.++.   .. +.....  .             
T Consensus         2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~---~~-lyv~~~--~-------------   62 (328)
T 3dsm_A            2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD---GI-GWIVVN--N-------------   62 (328)
T ss_dssp             CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET---TE-EEEEEG--G-------------
T ss_pred             CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC---CE-EEEEEc--C-------------
Confidence            455555432   124689999999998754 2110 0001112223444443   22 322211  1             


Q ss_pred             ccCCceEEEEEeCCCce-eecCC--CCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceee-EEcCCCCCCC
Q 015251          202 IYPRSDVQVYTVGSPAW-RSKGK--LAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFR-EVPKPDCGGL  277 (410)
Q Consensus       202 ~~~~~~~~Vyss~t~~W-r~~~~--~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~-~i~lP~~~~~  277 (410)
                         ...+.|++..+++- +.+..  .|..+     .+.-+|.+|.....     .+.|..+|+.+.+.. .++++.....
T Consensus        63 ---~~~v~viD~~t~~~~~~i~~~~~p~~i-----~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~~~~~  129 (328)
T 3dsm_A           63 ---SHVIFAIDINTFKEVGRITGFTSPRYI-----HFLSDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPDMDME  129 (328)
T ss_dssp             ---GTEEEEEETTTCCEEEEEECCSSEEEE-----EEEETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred             ---CCEEEEEECcccEEEEEcCCCCCCcEE-----EEeCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCCcccc
Confidence               15788899888754 23321  12211     12257888877733     378999999988764 5666541111


Q ss_pred             CCcceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccC-cCcccccccCCcchhhcccCCCceeEEEEEc
Q 015251          278 NRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAY-IPKGLKQSLDRPLKIWKNSLNGRVVRVVCIL  356 (410)
Q Consensus       278 ~~~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (410)
                      ......++.-+|+|++........+.++-++.    .....  +|... .|.                       -+.+.
T Consensus       130 ~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t----~~~~~--~i~~g~~p~-----------------------~i~~~  180 (328)
T 3dsm_A          130 SGSTEQMVQYGKYVYVNCWSYQNRILKIDTET----DKVVD--ELTIGIQPT-----------------------SLVMD  180 (328)
T ss_dssp             TCBCCCEEEETTEEEEEECTTCCEEEEEETTT----TEEEE--EEECSSCBC-----------------------CCEEC
T ss_pred             CCCcceEEEECCEEEEEcCCCCCEEEEEECCC----CeEEE--EEEcCCCcc-----------------------ceEEc
Confidence            11122344467788776542234455443322    22222  33320 111                       12445


Q ss_pred             cCCcEEEEecC-----------CEEEEEeCCCCcEEE
Q 015251          357 EKGEILLEYKS-----------RVLVSYDPKRRTFNE  382 (410)
Q Consensus       357 ~~g~il~~~~~-----------~~l~~yd~~~~~~~~  382 (410)
                      .+|++++....           ..+..+|++++++..
T Consensus       181 ~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~  217 (328)
T 3dsm_A          181 KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK  217 (328)
T ss_dssp             TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred             CCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence            67887776432           579999999988764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=84.92  E-value=28  Score=35.53  Aligned_cols=140  Identities=11%  Similarity=0.071  Sum_probs=70.2

Q ss_pred             ceEEEEEeCCCceeecCCCCceeecCCcceEE--C--CeEEEEecCCCCCCCceEEEEEcCCcee-eEEcCCCCCCCCCc
Q 015251          206 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALV--K--GRLHWVTRPRRYSPVRGIVSFDIADEQF-REVPKPDCGGLNRC  280 (410)
Q Consensus       206 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~--~--G~lyw~~~~~~~~~~~~Il~fDl~~e~~-~~i~lP~~~~~~~~  280 (410)
                      ..+.+++..++.|..+....... ..-.++.+  +  |.+...+..     .+.|..+|+.+..- ..+.+....   ..
T Consensus        77 g~I~vwd~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~-----dg~I~vwdl~~~~~~~~~~~~~~~---~~  147 (753)
T 3jro_A           77 GKVLIWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKENGTTSPIIIDAHA---IG  147 (753)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCSSSCCCCEEEECCS---SC
T ss_pred             CeEEEEECCCCcccccccccCCC-CCeEEEEECCCCCCCEEEEEeC-----CCcEEEEEeecCCCcceeEeecCC---Cc
Confidence            57889999998876554221100 00011112  1  333333332     26788888876521 111111100   00


Q ss_pred             ceEEEEe--------------CCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCC
Q 015251          281 NYHLTVL--------------SGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLN  346 (410)
Q Consensus       281 ~~~l~~~--------------~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~  346 (410)
                      ...+...              +|.+.+++. .+..+.||-+...  ...+.....+...                     
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~--~~~~~~~~~~~~h---------------------  203 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSD--AQTYVLESTLEGH---------------------  203 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEE-TTSCEEEEEEETT--TTEEEEEEEECCC---------------------
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEE-CCCeEEEEeccCC--cccceeeeeecCC---------------------
Confidence            1111111              355555554 3678999998753  3445555544321                     


Q ss_pred             CceeEEEEEccC---CcEEEE-ecCCEEEEEeCCCC
Q 015251          347 GRVVRVVCILEK---GEILLE-YKSRVLVSYDPKRR  378 (410)
Q Consensus       347 ~~~~~~~~~~~~---g~il~~-~~~~~l~~yd~~~~  378 (410)
                      ...+.-+++..+   |.+++. ..++.+..||..++
T Consensus       204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence            013445566556   666654 44567888888775

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=83.21  E-value=25  Score=32.82  Aligned_cols=186  Identities=12%  Similarity=0.146  Sum_probs=86.8

Q ss_pred             CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCc
Q 015251          138 NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPA  217 (410)
Q Consensus       138 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~  217 (410)
                      .+.+.|||..+++...+-...  .....+.++.|.|..+.+-+ ..   ..                ...+.+++.+++.
T Consensus       141 dg~i~lWd~~~~~~~~~~~~~--gH~~~V~~l~f~p~~~~~l~-s~---s~----------------D~~v~iwd~~~~~  198 (435)
T 4e54_B          141 GGDIMLWNFGIKDKPTFIKGI--GAGGSITGLKFNPLNTNQFY-AS---SM----------------EGTTRLQDFKGNI  198 (435)
T ss_dssp             TSCEEEECSSCCSCCEEECCC--SSSCCCCEEEECSSCTTEEE-EE---CS----------------SSCEEEEETTSCE
T ss_pred             CCEEEEEECCCCCceeEEEcc--CCCCCEEEEEEeCCCCCEEE-EE---eC----------------CCEEEEeeccCCc
Confidence            467889998887643321111  01133456778776555422 21   11                1467788887765


Q ss_pred             eeecCCCCce-eecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEe--CCeEEEE
Q 015251          218 WRSKGKLAYQ-FVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVL--SGCLSVA  294 (410)
Q Consensus       218 Wr~~~~~p~~-~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~--~G~L~~~  294 (410)
                      -+........ .....-...-+|.+......     .+.|..+|+.++....+....      ....-+.+  +|.-.++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-----dg~i~~wd~~~~~~~~~~~h~------~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          199 LRVFASSDTINIWFCSLDVSASSRMVVTGDN-----VGNVILLNMDGKELWNLRMHK------KKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             EEEEECCSSCSCCCCCEEEETTTTEEEEECS-----SSBEEEEESSSCBCCCSBCCS------SCEEEEEECTTCSSEEE
T ss_pred             eeEEeccCCCCccEEEEEECCCCCEEEEEeC-----CCcEeeeccCcceeEEEeccc------ceEEeeeecCCCceEEE
Confidence            5443211100 00001111224544444433     367888998765433322211      11222222  3442333


Q ss_pred             EeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEE-ecCCEEEEE
Q 015251          295 VYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLE-YKSRVLVSY  373 (410)
Q Consensus       295 ~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~-~~~~~l~~y  373 (410)
                      ....+..+.||-+...........      ...+                  ...+.-+++..+|..|+. ..++.+..|
T Consensus       268 s~s~d~~v~iwd~~~~~~~~~~~~------~~~h------------------~~~v~~~~~spdg~~l~s~~~D~~i~iw  323 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRGKASFLY------SLPH------------------RHPVNAACFSPDGARLLTTDQKSEIRVY  323 (435)
T ss_dssp             EEETTSBCCEEETTTCCSSSCCSB------CCBC------------------SSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred             EecCcceeeEEecccccccceEEE------eeec------------------cccccceeECCCCCeeEEEcCCCEEEEE
Confidence            333467889997754221111100      0000                  012333455566766654 455678888


Q ss_pred             eCCCCcE
Q 015251          374 DPKRRTF  380 (410)
Q Consensus       374 d~~~~~~  380 (410)
                      |..+...
T Consensus       324 d~~~~~~  330 (435)
T 4e54_B          324 SASQWDC  330 (435)
T ss_dssp             ESSSSSS
T ss_pred             ECCCCcc
Confidence            8877653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=81.34  E-value=29  Score=30.89  Aligned_cols=149  Identities=11%  Similarity=0.079  Sum_probs=75.1

Q ss_pred             ceEEEEEeC-CCceeecCC--CCc--eeecCCcceEECCe-EEEEecCCCCCCCceEEEEEcC--CceeeEE----cCCC
Q 015251          206 SDVQVYTVG-SPAWRSKGK--LAY--QFVRRPSEALVKGR-LHWVTRPRRYSPVRGIVSFDIA--DEQFREV----PKPD  273 (410)
Q Consensus       206 ~~~~Vyss~-t~~Wr~~~~--~p~--~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~Il~fDl~--~e~~~~i----~lP~  273 (410)
                      ..+.+|+.. ++....+..  .+.  .+.  .-.+.-+|. +|.....     .+.|..||+.  +.++..+    ..|.
T Consensus       162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~--~~~~spdg~~l~v~~~~-----~~~v~v~~~~~~~g~~~~~~~~~~~~~  234 (347)
T 3hfq_A          162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPR--HLVFSPDGQYAFLAGEL-----SSQIASLKYDTQTGAFTQLGIVKTIPA  234 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCTTCCEE--EEEECTTSSEEEEEETT-----TTEEEEEEEETTTTEEEEEEEEESSCT
T ss_pred             CEEEEEEECCCCcEEEeeeEEcCCCCCCc--eEEECCCCCEEEEEeCC-----CCEEEEEEecCCCCceEEeeeeeecCC
Confidence            578888888 565543321  000  010  001122576 5544433     3566666665  4665433    2232


Q ss_pred             CCCCCCcceEEEE-eCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEE
Q 015251          274 CGGLNRCNYHLTV-LSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRV  352 (410)
Q Consensus       274 ~~~~~~~~~~l~~-~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  352 (410)
                      ..........+.. -+|+..++.......+.||.++..+   .+.....+...                     .....-
T Consensus       235 ~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g---~~~~~~~~~~~---------------------~~~~~~  290 (347)
T 3hfq_A          235 DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG---HLTLIQQISTE---------------------GDFPRD  290 (347)
T ss_dssp             TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG---CEEEEEEEECS---------------------SSCCCE
T ss_pred             CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC---cEEEeEEEecC---------------------CCCcCe
Confidence            1110011122322 3576444433346789999997532   34444444320                     001224


Q ss_pred             EEEccCCcEEEEe--cCCEEEEE--eCCCCcEEEEEE
Q 015251          353 VCILEKGEILLEY--KSRVLVSY--DPKRRTFNEFVF  385 (410)
Q Consensus       353 ~~~~~~g~il~~~--~~~~l~~y--d~~~~~~~~v~~  385 (410)
                      +++..+|+.++..  .++.+..|  |.++++++.+.-
T Consensus       291 ~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~  327 (347)
T 3hfq_A          291 FDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQK  327 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEeccc
Confidence            5677788865543  33566677  889999988774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	410
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-10
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	2e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	3e-06
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.001

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (128), Expect = 2e-10
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 26 ETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64
          ++LP E++L I   L +  L++   VC+ W  LA D  L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 26 ETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64
                I  +IL  L   SL   + VC+ W  +  D +L
Sbjct: 16 ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML 54

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 26 ETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64
            LP+E+ L++L  L    L+Q    CR WR LA+D LL
Sbjct: 20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 58

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 26 ETLPREIVLHILLRLPITSLVQFKFVCRAWRALA-QDPLL 64
           +LP EI L I   L    ++    V + W  +  +   L
Sbjct: 7  TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	410
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.59
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.42
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.35
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.26
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.15
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.51
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.21

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2e-12  Score=79.40  Aligned_cols=40  Identities=35%  Similarity=0.624  Sum_probs=37.2

Q ss_pred             CCCCcHHHHHHHHccCCcccccceecccHhhHhhhCChhh
Q 015251           25 METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL   64 (410)
Q Consensus        25 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F   64 (410)
                      +..||+|++.+||++||+++++|+++|||+|+.++.++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            3679999999999999999999999999999999998764

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1e-08  Score=76.66  Aligned_cols=51  Identities=35%  Similarity=0.456  Sum_probs=45.4

Q ss_pred             ccCCCCCCCcHHHHHHHHccCCcccccceecccHhhHhhhCChhhhhhhhc
Q 015251           20 QQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNT   70 (410)
Q Consensus        20 ~~~~~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~~   70 (410)
                      -....++.||+||+..||++|++++|+++++|||+|+.++.++.+=+.+..
T Consensus        14 ~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~   64 (102)
T d2ovrb1          14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (102)
T ss_dssp             CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             hccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            345678899999999999999999999999999999999999988666553

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=2.8e-08  Score=73.84  Aligned_cols=41  Identities=24%  Similarity=0.382  Sum_probs=36.6

Q ss_pred             CCCCCcHHHHHHHHccCCcccccceecccHhhHhhhC-Chhh
Q 015251           24 GMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQ-DPLL   64 (410)
Q Consensus        24 ~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~-s~~F   64 (410)
                      .++.||+||+.+||+.|++++|++++.|||+|+.+|+ ++.+
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~L   46 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   46 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            3567999999999999999999999999999999985 4553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=7.1e-06  Score=72.24  Aligned_cols=201  Identities=10%  Similarity=0.049  Sum_probs=118.1

Q ss_pred             ceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCce
Q 015251          139 DAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAW  218 (410)
Q Consensus       139 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~W  218 (410)
                      ..+.++||.|++|..+|+.|..+.....+  ..    +. +++.++...... .+.        .....+++|+..+++|
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~--~~----~~-~iyv~GG~~~~~-~~~--------~~~~~~~~yd~~~~~w   82 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGC--VV----GG-LLYAVGGRNNSP-DGN--------TDSSALDCYNPMTNQW   82 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEE--EE----TT-EEEEECCEEEET-TEE--------EECCCEEEEETTTTEE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEE--EE----CC-EEEEEeCcccCC-CCc--------cccchhhhcccccccc
Confidence            46889999999999998866543222222  22    12 555554322100 000        0136899999999999


Q ss_pred             eecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEEEEeCC
Q 015251          219 RSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGN  298 (410)
Q Consensus       219 r~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~~~~~~  298 (410)
                      +.++.+|... ....++..+|.+|.+..............+|..+++|...+.++..   ......+..++.+.++....
T Consensus        83 ~~~~~~p~~r-~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~GG~~  158 (288)
T d1zgka1          83 SPCAPMSVPR-NRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR---RIGVGVAVLNRLLYAVGGFD  158 (288)
T ss_dssp             EECCCCSSCC-BTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC---CBSCEEEEETTEEEEECCBC
T ss_pred             ccccccccee-cceeccccceeeEEecceecccccceeeeeccccCccccccccccc---cccceeeeeeecceEecCcc
Confidence            9998776543 3345677899999886543333345688899999999877554322   12345677888888775432


Q ss_pred             --CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec------CCEE
Q 015251          299 --YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK------SRVL  370 (410)
Q Consensus       299 --~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~------~~~l  370 (410)
                        ...-++|.++.  ....|........  +.                    .... ....++.+++..+      ....
T Consensus       159 ~~~~~~~~~~~d~--~~~~~~~~~~~~~--~~--------------------~~~~-~~~~~~~i~i~GG~~~~~~~~~~  213 (288)
T d1zgka1         159 GTNRLNSAECYYP--ERNEWRMITAMNT--IR--------------------SGAG-VCVLHNCIYAAGGYDGQDQLNSV  213 (288)
T ss_dssp             SSCBCCCEEEEET--TTTEEEECCCCSS--CC--------------------BSCE-EEEETTEEEEECCBCSSSBCCCE
T ss_pred             cccccceEEEeec--ccccccccccccc--cc--------------------cccc-ccceeeeEEEecCccccccccce
Confidence              12234555543  1355665322111  00                    0011 1122345554421      1357


Q ss_pred             EEEeCCCCcEEEEE
Q 015251          371 VSYDPKRRTFNEFV  384 (410)
Q Consensus       371 ~~yd~~~~~~~~v~  384 (410)
                      ..||..+++++.+.
T Consensus       214 ~~~~~~~~~~~~~~  227 (288)
T d1zgka1         214 ERYDVETETWTFVA  227 (288)
T ss_dssp             EEEETTTTEEEECC
T ss_pred             eeeeecceeeeccc
Confidence            89999999998875

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=0.00016  Score=63.16  Aligned_cols=198  Identities=13%  Similarity=0.100  Sum_probs=119.4

Q ss_pred             ceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCce
Q 015251          139 DAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAW  218 (410)
Q Consensus       139 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~W  218 (410)
                      ..+.++||.|.+|..+|+.+..+.....  ..++     -|++.+.....    ..         .....++|+..++.|
T Consensus        70 ~~~~~yd~~~~~w~~~~~~p~~r~~~~~--~~~~-----~~i~~~gg~~~----~~---------~~~~~~~~~~~~~~~  129 (288)
T d1zgka1          70 SALDCYNPMTNQWSPCAPMSVPRNRIGV--GVID-----GHIYAVGGSHG----CI---------HHNSVERYEPERDEW  129 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEE--EEET-----TEEEEECCEET----TE---------ECCCEEEEETTTTEE
T ss_pred             chhhhcccccccccccccccceecceec--cccc-----eeeEEecceec----cc---------ccceeeeeccccCcc
Confidence            4789999999999999986654322222  2222     24544432211    11         135789999999999


Q ss_pred             eecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEEEEeCC
Q 015251          219 RSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGN  298 (410)
Q Consensus       219 r~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~~~~~~  298 (410)
                      ......+... .....+..++.+|.+...........+..||+.+++|...+.++...   ........++++.+.....
T Consensus       130 ~~~~~~~~~r-~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~i~GG~~  205 (288)
T d1zgka1         130 HLVAPMLTRR-IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR---SGAGVCVLHNCIYAAGGYD  205 (288)
T ss_dssp             EECCCCSSCC-BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC---BSCEEEEETTEEEEECCBC
T ss_pred             cccccccccc-ccceeeeeeecceEecCcccccccceEEEeecccccccccccccccc---ccccccceeeeEEEecCcc
Confidence            9887655433 23445677888887765533334567999999999999886554321   2345777888888876432


Q ss_pred             --CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec------CCEE
Q 015251          299 --YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK------SRVL  370 (410)
Q Consensus       299 --~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~------~~~l  370 (410)
                        ...-+.|..+-.  ...|...-...  .|+.                   ... ++ .-+|+|++.-+      ...+
T Consensus       206 ~~~~~~~~~~~~~~--~~~~~~~~~~p--~~r~-------------------~~~-~~-~~~~~l~v~GG~~~~~~~~~v  260 (288)
T d1zgka1         206 GQDQLNSVERYDVE--TETWTFVAPMK--HRRS-------------------ALG-IT-VHQGRIYVLGGYDGHTFLDSV  260 (288)
T ss_dssp             SSSBCCCEEEEETT--TTEEEECCCCS--SCCB-------------------SCE-EE-EETTEEEEECCBCSSCBCCEE
T ss_pred             ccccccceeeeeec--ceeeecccCcc--Cccc-------------------ceE-EE-EECCEEEEEecCCCCeecceE
Confidence              222345554431  34566532111  1110                   111 11 22577776521      1358


Q ss_pred             EEEeCCCCcEEEEEE
Q 015251          371 VSYDPKRRTFNEFVF  385 (410)
Q Consensus       371 ~~yd~~~~~~~~v~~  385 (410)
                      ..||+++++|+.+.-
T Consensus       261 ~~yd~~~~~W~~~~~  275 (288)
T d1zgka1         261 ECYDPDTDTWSEVTR  275 (288)
T ss_dssp             EEEETTTTEEEEEEE
T ss_pred             EEEECCCCEEEECCC
Confidence            899999999999964

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.6e-07  Score=71.98  Aligned_cols=46  Identities=28%  Similarity=0.421  Sum_probs=39.3

Q ss_pred             CCCCCc----HHHHHHHHccCCcccccceecccHhhHhhhCChhhhhhhh
Q 015251           24 GMETLP----REIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHN   69 (410)
Q Consensus        24 ~~~~LP----~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~~   69 (410)
                      .++.||    |||+..||+.|++++|+++.+|||+|+.+++++.+=+...
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~   59 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI   59 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            345566    6999999999999999999999999999999887755443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.51  E-value=0.0012  Score=59.95  Aligned_cols=124  Identities=11%  Similarity=0.071  Sum_probs=73.4

Q ss_pred             EeccCceEEEeeccCCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccc
Q 015251          123 VGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVI  202 (410)
Q Consensus       123 ~~s~~Gll~l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~  202 (410)
                      ....+|.+++..+...+...++||.|++|..+|..+..+.. ......  .   +-+|+.+.....   .+.        
T Consensus        82 ~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~-~~~~~~--~---dG~v~v~GG~~~---~~~--------  144 (387)
T d1k3ia3          82 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY-QSSATM--S---DGRVFTIGGSWS---GGV--------  144 (387)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS-CEEEEC--T---TSCEEEECCCCC---SSS--------
T ss_pred             EEecCCcEEEeecCCCcceeEecCccCcccccccccccccc-cceeee--c---CCceeeeccccc---ccc--------
Confidence            44468887776544456889999999999999987654422 222111  1   124555432111   111        


Q ss_pred             cCCceEEEEEeCCCceeecCCCCceee---c-------CCcc-eE--ECCeEEEEecCCCCCCCceEEEEEcCCceeeEE
Q 015251          203 YPRSDVQVYTVGSPAWRSKGKLAYQFV---R-------RPSE-AL--VKGRLHWVTRPRRYSPVRGIVSFDIADEQFREV  269 (410)
Q Consensus       203 ~~~~~~~Vyss~t~~Wr~~~~~p~~~~---~-------~~~~-v~--~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i  269 (410)
                       ....+++|+..+++|..++..+....   .       .... ++  .+|.++.....     ...+..+|..+..|...
T Consensus       145 -~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~-----~~~~~~~~~~~~~~~~~  218 (387)
T d1k3ia3         145 -FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS-----TAMNWYYTSGSGDVKSA  218 (387)
T ss_dssp             -CCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS-----SEEEEEECSTTCEEEEE
T ss_pred             -ccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc-----CCcEEecCcccCcEeec
Confidence             13578999999999998864322111   0       0111 11  15666655433     35788899999998765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.21  E-value=0.00069  Score=61.58  Aligned_cols=128  Identities=11%  Similarity=0.119  Sum_probs=80.3

Q ss_pred             EEeccCceEEEeeccC----------CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCC
Q 015251          122 AVGSCNGLLCLSDSLF----------NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCS  191 (410)
Q Consensus       122 ~~~s~~Gll~l~~~~~----------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~  191 (410)
                      .+...+|-|++-.+..          .....++||.|++|..+|+....+.. ...+....+   +-+++.+...     
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~-~~~~~~~~~---~g~i~v~Gg~-----   95 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM-FCPGISMDG---NGQIVVTGGN-----   95 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC-SSCEEEECT---TSCEEEECSS-----
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCccc-ceeEEEEec---CCcEEEeecC-----
Confidence            4455677765543211          12478999999999988765433221 222333332   2345544211     


Q ss_pred             CCccccccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCC-CCCCceEEEEEcCCceeeEEc
Q 015251          192 NSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRR-YSPVRGIVSFDIADEQFREVP  270 (410)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~-~~~~~~Il~fDl~~e~~~~i~  270 (410)
                       +           ...+++|+..+++|...+.++.........+..||.+|.+..... ......+..||+.+++|..++
T Consensus        96 -~-----------~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3          96 -D-----------AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             -S-----------TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             -C-----------CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecC
Confidence             1           257899999999999988776654333334445899999876522 223457899999999999874