Citrus Sinensis ID: 015256

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
MLWRDGCRWGCYGPWWDHSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELWRRLQLPSVPAPPPSISSSNDSSIGMPPRLAPDGLPLNVLPGAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPVGAVVPEQELQPLQS
cccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccEEEccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEccccEEEEcccccEEEEcccccEEEEEEEEcccccEEEEcEEEEEEEEEEEccccEEEEEEccccHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEcccccccccccHHHHHHHHcccccccEEEEEEEcccccEEEEEEEcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHEEEHHHccccccccccccccccccccccc
ccccccccccccccccccccEEEccccccccccEccccccEEEEEEEEEEEccEEEcccHHHcccccEEEEEcccEEEcccHHHHHHHHHHHHHHHccccccccccccccccEEccccccccEccccccEEEEEEccccEEEcccccEEEEEcccccEEEEEEEcccccEEEEEEEEEccEEEEEEccccEEEEccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEccccccccHHHHHHHHHHHccccccEEEEEEEEcccccEEEEEEEcccccccHccHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccHHccccccc
mlwrdgcrwgcygpwwdhsstrygilpfrpfpqflagnspyynIELKELRvagkplkvsprifdgghgtvldsgttyaylpghAFAAFKDALIKETHVLKrirgpdpnyddicfsgagrdvselsktfpqvdmvfgngqkltlspenylfRHMKVSGAYCLgifqnsdsttllggIVVRNTlvtydrgndkvgFWKTNCSELWRrlqlpsvpapppsisssndssigmpprlapdglplnvlpgafqiGVITFDMsfslnnshmkpnfTELSEFIAHELQVDDIEVHLLNFsskghdylvrwgifpdesdnyisnTTALNIILRLREHhmqfperfgshqlvkwniepqikqtWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEAsktyqpvgavvpeqelqplqs
MLWRDGCRWGCYGPWWDHSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLkrirgpdpnyDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLvtydrgndkvGFWKTNCSELWRRLQLPSVPAPPPSISSSNDSSIGMPPRLAPDGLPLNVLPGAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKtyqpvgavvpeqelqplqs
MLWRDGCRWGCYGPWWDHSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELWRRLQLpsvpapppsisssndssigmppRLAPDGLPLNVLPGAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNlvavvvgivvtlllglsilglwsvwKRRQEASKTYQPVGAVVPEQELQPLQS
*LWRDGCRWGCYGPWWDHSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELWRRL******************************LPLNVLPGAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRR************************
****DGCRWGCYGPWWDHSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKE***********PNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC*******************************************PGAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRLREHHM**P**FGSHQLV************WQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQE****YQPVGAVVPE*ELQ****
MLWRDGCRWGCYGPWWDHSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELWRRLQLPSV**************IGMPPRLAPDGLPLNVLPGAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPVGAVVPEQELQPLQS
****DGCRWGCYGPWWDHSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELWRRLQLPSV*****************************VLPGAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPVGAVVPE*E******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLWRDGCRWGCYGPWWDHSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELWRRLQLPSVPAPPPSISSSNDSSIGMPPRLAPDGLPLNVLPGAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPVGAVVPEQELQPLQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query410 2.2.26 [Sep-21-2011]
Q9S9K4475 Aspartic proteinase-like no no 0.368 0.317 0.329 3e-10
Q766C3437 Aspartic proteinase nepen N/A no 0.368 0.345 0.310 5e-10
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.370 0.304 0.292 1e-09
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.346 0.346 0.295 1e-08
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.319 0.278 0.309 9e-08
Q766C2438 Aspartic proteinase nepen N/A no 0.358 0.335 0.298 2e-07
Q6IE75514 Beta-secretase 2 OS=Rattu yes no 0.373 0.297 0.265 3e-07
Q9JL18514 Beta-secretase 2 OS=Mus m yes no 0.373 0.297 0.265 5e-07
Q0IU52410 Aspartic proteinase Asp1 no no 0.358 0.358 0.263 6e-07
Q9Y5Z0518 Beta-secretase 2 OS=Homo yes no 0.373 0.295 0.260 8e-07
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function desciption
 Score = 67.0 bits (162), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 19/170 (11%)

Query: 38  NSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETH 97
           N  +YN+ L  + V G  L +   I   G GT++DSGTT AY P        D+LI+   
Sbjct: 270 NQMHYNVMLMGMDVDGTSLDLPRSIVRNG-GTIVDSGTTLAYFP----KVLYDSLIETIL 324

Query: 98  VLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSG 157
             + ++         CFS +    + + + FP V   F +  KLT+ P +YLF   +   
Sbjct: 325 ARQPVKLHIVEETFQCFSFS----TNVDEAFPPVSFEFEDSVKLTVYPHDYLFTLEE--E 378

Query: 158 AYCLGIFQNSDSTT-------LLGGIVVRNTLVTYDRGNDKVGFWKTNCS 200
            YC G +Q    TT       LLG +V+ N LV YD  N+ +G+   NCS
Sbjct: 379 LYCFG-WQAGGLTTDERSEVILLGDLVLSNKLVVYDLDNEVIGWADHNCS 427

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q6IE75|BACE2_RAT Beta-secretase 2 OS=Rattus norvegicus GN=Bace2 PE=2 SV=1 Back     alignment and function description
>sp|Q9JL18|BACE2_MOUSE Beta-secretase 2 OS=Mus musculus GN=Bace2 PE=2 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y5Z0|BACE2_HUMAN Beta-secretase 2 OS=Homo sapiens GN=BACE2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
225458774 659 PREDICTED: aspartic proteinase-like prot 0.902 0.561 0.676 1e-155
255538124 641 Aspartic proteinase nepenthesin-1 precur 0.902 0.577 0.702 1e-155
224136884 626 predicted protein [Populus trichocarpa] 0.897 0.587 0.687 1e-140
42568291 631 aspartyl protease family protein [Arabid 0.902 0.586 0.599 1e-132
356565521 634 PREDICTED: aspartic proteinase-like prot 0.9 0.582 0.598 1e-126
356514298 663 PREDICTED: aspartic proteinase-like prot 0.902 0.558 0.595 1e-125
297795137 665 predicted protein [Arabidopsis lyrata su 0.863 0.532 0.575 1e-124
224081804 564 predicted protein [Populus trichocarpa] 0.921 0.670 0.580 1e-122
242050744 632 hypothetical protein SORBIDRAFT_02g03815 0.882 0.572 0.579 1e-121
293334661 631 uncharacterized protein LOC100382594 pre 0.882 0.573 0.574 1e-121
>gi|225458774|ref|XP_002283258.1| PREDICTED: aspartic proteinase-like protein 2 [Vitis vinifera] gi|302142232|emb|CBI19435.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/383 (67%), Positives = 317/383 (82%), Gaps = 13/383 (3%)

Query: 39  SPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHV 98
           SPYYNIELKE+ VAGKPLK+SP  FD  HGTVLDSGTTYAYLP  AF AF+DA+IK++H 
Sbjct: 269 SPYYNIELKEIHVAGKPLKLSPSTFDRKHGTVLDSGTTYAYLPEEAFVAFRDAIIKKSHN 328

Query: 99  LKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGA 158
           LK+I GPDPNY+DICFSGAGRDVS+LSK FP+VDMVF NGQKL+L+PENYLF+H KV GA
Sbjct: 329 LKQIHGPDPNYNDICFSGAGRDVSQLSKAFPEVDMVFSNGQKLSLTPENYLFQHTKVHGA 388

Query: 159 YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELWRRLQLP--------- 209
           YCLGIF+N DSTTLLGGI+VRNTLVTYDR N+K+GFWKTNCSELW+RL +P         
Sbjct: 389 YCLGIFRNGDSTTLLGGIIVRNTLVTYDRENEKIGFWKTNCSELWKRLHIPGAPAAAPIV 448

Query: 210 ----SVPAPPPSISSSNDSSIGMPPRLAPDGLPLNVLPGAFQIGVITFDMSFSLNNSHMK 265
               SV AP P +S +N++++GMPP +AP GLP  VLPG FQ+G+ITFDMSFS+N S+MK
Sbjct: 449 PTPKSVSAPAPVVSYNNNTTVGMPPTVAPSGLPQEVLPGEFQVGLITFDMSFSVNYSNMK 508

Query: 266 PNFTELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRL 325
           PNFTEL+EFIAHEL+++  +VH LNF SKG+  ++RW IFP ES  YISN+TA++IIL+L
Sbjct: 509 PNFTELAEFIAHELEINASQVHFLNFFSKGNHSVIRWAIFPAESATYISNSTAMSIILQL 568

Query: 326 REHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKR 385
           +EH +  PERFGS+QLV+W +EPQIK+TWW+++   VVVG+++TL+LGLS  G+W VWK 
Sbjct: 569 KEHRVHLPERFGSYQLVEWKVEPQIKRTWWEQHFWTVVVGVIITLILGLSTFGVWFVWKW 628

Query: 386 RQEASKTYQPVGAVVPEQELQPL 408
           RQ A  TY+P+GA VPEQELQ L
Sbjct: 629 RQNAVGTYKPIGARVPEQELQQL 651

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255538124|ref|XP_002510127.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223550828|gb|EEF52314.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224136884|ref|XP_002326969.1| predicted protein [Populus trichocarpa] gi|222835284|gb|EEE73719.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42568291|ref|NP_199124.3| aspartyl protease family protein [Arabidopsis thaliana] gi|332007527|gb|AED94910.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356565521|ref|XP_003550988.1| PREDICTED: aspartic proteinase-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356514298|ref|XP_003525843.1| PREDICTED: aspartic proteinase-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297795137|ref|XP_002865453.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297311288|gb|EFH41712.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224081804|ref|XP_002306494.1| predicted protein [Populus trichocarpa] gi|222855943|gb|EEE93490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|242050744|ref|XP_002463116.1| hypothetical protein SORBIDRAFT_02g038150 [Sorghum bicolor] gi|241926493|gb|EER99637.1| hypothetical protein SORBIDRAFT_02g038150 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|293334661|ref|NP_001168795.1| uncharacterized protein LOC100382594 precursor [Zea mays] gi|223973065|gb|ACN30720.1| unknown [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
TAIR|locus:2167776631 AT5G43100 [Arabidopsis thalian 0.902 0.586 0.551 9.7e-112
TAIR|locus:2083098632 AT3G50050 [Arabidopsis thalian 0.868 0.563 0.471 1.2e-81
TAIR|locus:2200023492 AT1G08210 [Arabidopsis thalian 0.382 0.319 0.319 2.3e-15
TAIR|locus:2101586430 AT3G42550 [Arabidopsis thalian 0.463 0.441 0.289 4.7e-15
TAIR|locus:2172661493 AT5G22850 [Arabidopsis thalian 0.385 0.320 0.296 5.2e-15
TAIR|locus:2198753485 AT1G05840 [Arabidopsis thalian 0.378 0.319 0.342 6.5e-15
TAIR|locus:2183617482 AT5G36260 [Arabidopsis thalian 0.370 0.315 0.337 5.5e-14
TAIR|locus:2040545512 AT2G36670 [Arabidopsis thalian 0.387 0.310 0.270 1.1e-13
TAIR|locus:2200365475 AT1G65240 [Arabidopsis thalian 0.368 0.317 0.323 1.1e-10
TAIR|locus:2057831396 AT2G28010 [Arabidopsis thalian 0.390 0.404 0.298 1.6e-10
TAIR|locus:2167776 AT5G43100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
 Identities = 205/372 (55%), Positives = 262/372 (70%)

Query:    39 SPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHV 98
             SPYYNI+LK++ VAGK LK++P++F+G HGTVLDSGTTYAY P  AF A KDA+IKE   
Sbjct:   257 SPYYNIDLKQMHVAGKSLKLNPKVFNGKHGTVLDSGTTYAYFPKEAFIAIKDAVIKEIPS 316

Query:    99 LKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGA 158
             LKRI GPDPNYDD+CFSGAGRDV+E+   FP++ M FGNGQKL LSPENYLFRH KV GA
Sbjct:   317 LKRIHGPDPNYDDVCFSGAGRDVAEIHNFFPEIAMEFGNGQKLILSPENYLFRHTKVRGA 376

Query:   159 YCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELWRRLQLXXXXXXXXXX 218
             YCLGIF + DSTTLLGGIVVRNTLVTYDR NDK+GF KTNCS++WRRL            
Sbjct:   377 YCLGIFPDRDSTTLLGGIVVRNTLVTYDRENDKLGFLKTNCSDIWRRLAAPESPAPTSPI 436

Query:   219 XXXXXXXXXXXXRLAPDGLPLNVLPGAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHE 278
                           A    P + LPG F++GVITF++S S+NNS +KP F+E+++FIAHE
Sbjct:   437 SQNKSSNISPSP--ATSESPTSHLPGVFRVGVITFEVSISVNNSSLKPKFSEIADFIAHE 494

Query:   279 LQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGS 338
             L +   +V LLNFSS G++Y ++WG+FP +S  YISNTTALNI+L L+E+ ++ P +FGS
Sbjct:   495 LDIQSAQVRLLNFSSSGNEYRLKWGVFPPQSSEYISNTTALNIMLLLKENRLRLPGQFGS 554

Query:   339 HQLVKWNIEPQIKQTWWQRNXXXXXXXXXXXXXXXXXXXXXXXXXKRRQEASKTYQPVGA 398
             ++L++W  E + KQ+WW+++                         +RR++   TY+PV A
Sbjct:   555 YKLLEWKAEQKKKQSWWEKHLLGVVGGAMISLLVTSVMIKLALVWRRRKQEEATYEPVNA 614

Query:   399 VVPEQELQPLQS 410
              + EQELQPL S
Sbjct:   615 AIKEQELQPLSS 626
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2083098 AT3G50050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200023 AT1G08210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101586 AT3G42550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172661 AT5G22850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198753 AT1G05840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183617 AT5G36260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040545 AT2G36670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200365 AT1G65240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057831 AT2G28010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.23LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 8e-29
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 2e-19
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-09
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 1e-08
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 2e-07
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 3e-06
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 6e-06
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 9e-06
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 2e-05
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 4e-05
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 2e-04
COG2976 207 COG2976, COG2976, Uncharacterized protein conserve 0.003
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  113 bits (284), Expect = 8e-29
 Identities = 55/208 (26%), Positives = 73/208 (35%), Gaps = 68/208 (32%)

Query: 11  CYGPWWDHSSTRYGIL--------------PFRPFPQFLAGNSPYYNIELKELRVAGKPL 56
           C  P  D   +   IL              P    P     N  YY + L+ + V GK L
Sbjct: 107 CLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPA----NPTYYYVNLEGISVGGKRL 162

Query: 57  KVSPRIF----DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDI 112
            + P +F    DG  GT++DSGTT  YLP                               
Sbjct: 163 PIPPSVFAIDSDGSGGTIIDSGTTLTYLP------------------------------- 191

Query: 113 CFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS-DSTT 171
                          +P + + F  G  L L PENY        G  CL I  +S    +
Sbjct: 192 ------------DPAYPDLTLHFDGGADLELPPENYFVDVG--EGVVCLAILSSSSGGVS 237

Query: 172 LLGGIVVRNTLVTYDRGNDKVGFWKTNC 199
           +LG I  +N LV YD  N ++GF   +C
Sbjct: 238 ILGNIQQQNFLVEYDLENSRLGFAPADC 265

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>gnl|CDD|225523 COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 410
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.94
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 99.93
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 99.93
PLN03146431 aspartyl protease family protein; Provisional 99.9
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 99.89
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 99.88
cd05487326 renin_like Renin stimulates production of angioten 99.88
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 99.87
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 99.87
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 99.87
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 99.87
KOG1339398 consensus Aspartyl protease [Posttranslational mod 99.86
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 99.86
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 99.86
PTZ00165482 aspartyl protease; Provisional 99.86
cd05477318 gastricsin Gastricsins, asparate proteases produce 99.86
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 99.86
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 99.86
PTZ00013450 plasmepsin 4 (PM4); Provisional 99.83
PTZ00147453 plasmepsin-1; Provisional 99.83
cd05475273 nucellin_like Nucellins, plant aspartic proteases 99.83
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 99.8
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 99.71
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 99.59
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 94.94
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 94.85
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 92.3
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 89.33
PF01102122 Glycophorin_A: Glycophorin A; InterPro: IPR001195 87.45
PF1365090 Asp_protease_2: Aspartyl protease 85.25
PF15330107 SIT: SHP2-interacting transmembrane adaptor protei 85.11
PF0869340 SKG6: Transmembrane alpha-helix domain; InterPro: 84.66
PF0103464 Syndecan: Syndecan domain; InterPro: IPR001050 The 83.84
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 83.56
PF15050133 SCIMP: SCIMP protein 82.64
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 80.94
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information 
Probab=99.94  E-value=2.9e-26  Score=206.95  Aligned_cols=154  Identities=33%  Similarity=0.630  Sum_probs=119.5

Q ss_pred             cEEEEEeEEEECCEEeecCCccc---cCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhhccccc-CCCCCCccccCCC
Q 015256           41 YYNIELKELRVAGKPLKVSPRIF---DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIR-GPDPNYDDICFSG  116 (410)
Q Consensus        41 yY~V~L~gI~Vgg~~l~l~~~~f---~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~~~~~~-g~~~~~~~~Cy~~  116 (410)
                      +|.|+|++|.||++++.+++..|   ++..++||||||++|+||+++|++++++|.+++....... ......++.||+.
T Consensus         1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~   80 (161)
T PF14541_consen    1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL   80 (161)
T ss_dssp             SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred             CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence            59999999999999999998877   4678999999999999999999999999999987432110 1122457899987


Q ss_pred             CccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEc---CCCCeEEcHHHhhcEEEEEeCCCCEEE
Q 015256          117 AGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQN---SDSTTLLGGIVVRNTLVTYDRGNDKVG  193 (410)
Q Consensus       117 s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s---~~~~~ILG~~Fmr~~yVVFD~en~rIG  193 (410)
                      ....-+.....+|+|+|+|.+|.+++|++++|++..+  ++.+|+++...   .++..|||..+|++++++||++++|||
T Consensus        81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~--~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig  158 (161)
T PF14541_consen   81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS--PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG  158 (161)
T ss_dssp             GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC--TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred             cccccccccccCCeEEEEEeCCcceeeeccceeeecc--CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence            6621112336899999999989999999999999987  47899999998   378999999999999999999999999


Q ss_pred             EEe
Q 015256          194 FWK  196 (410)
Q Consensus       194 FA~  196 (410)
                      |++
T Consensus       159 F~~  161 (161)
T PF14541_consen  159 FAP  161 (161)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            986

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT Back     alignment and domain information
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ] Back     alignment and domain information
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ] Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF15050 SCIMP: SCIMP protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 1e-07
3l58_A414 Structure Of Bace Bound To Sch589432 Length = 414 7e-04
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 7e-04
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 8e-04
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 8e-04
2qu2_A415 Bace1 With Compound 1 Length = 415 8e-04
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 8e-04
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 8e-04
3exo_A413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 8e-04
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 8e-04
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 9e-04
2zhr_A411 Crystal Structure Of Bace1 In Complex With Om99-2 A 9e-04
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 9e-04
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 9e-04
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 9e-04
3ckp_A412 Crystal Structure Of Bace-1 In Complex With Inhibit 9e-04
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 9e-04
3vv6_A416 Crystal Structure Of Beta Secetase In Complex With 9e-04
3udh_A404 Crystal Structure Of Bace With Compound 1 Length = 9e-04
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 9e-04
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure 
Iteration: 1

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 41  YYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLK 100
           YY IE+ +L + G+ L +  R ++     ++DSGTT   LP   F A  +A+ + + +  
Sbjct: 196 YYQIEILKLEIGGQSLNLDCREYNADKA-IVDSGTTLLRLPQKVFDAVVEAVARASLI-- 252
Query: 101 RIRGPDPNYDDICFSGAGRDVSELSKT----FPQVDMVFGNGQ-----KLTLSPENYLFR 151
                 P + D  ++G+       S+T    FP++ +   +       ++T+ P+ Y+  
Sbjct: 253 ------PEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQP 306
Query: 152 HMKVSGAYCLGIFQNSDSTT--LLGGIVVRNTLVTYDRGNDKVGFWKTNCSEL 202
            M     Y    F  S ST   ++G  V+    V +DR   +VGF  + C+E+
Sbjct: 307 MMGAGLNYECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPCAEI 359
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 9e-35
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 2e-34
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 1e-32
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 5e-25
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 5e-19
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 7e-18
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 6e-11
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 7e-11
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 9e-11
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 7e-10
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 7e-10
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 1e-09
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 3e-09
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 4e-09
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 4e-09
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 6e-09
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 6e-09
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 8e-09
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 1e-08
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 1e-08
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 2e-08
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 4e-08
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 6e-08
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 7e-08
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 9e-08
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 1e-07
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 3e-07
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 3e-07
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 3e-07
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 4e-07
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 1e-06
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
 Score =  131 bits (330), Expect = 9e-35
 Identities = 34/223 (15%), Positives = 61/223 (27%), Gaps = 33/223 (14%)

Query: 10  GCYGPWWDHSSTRYGILPFRPFPQFLAGNS------------PYYNIELKELRVAGKPLK 57
             +            I    P P      S            P + I  + + V    + 
Sbjct: 162 NRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVP 221

Query: 58  VSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYD------D 111
           V       G G +L +   Y  L    +    DA  K          P            
Sbjct: 222 VPEGALATG-GVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFG 280

Query: 112 ICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIF------- 164
           +C+       +      P V +    G   T++ +N +    +  G  C+          
Sbjct: 281 VCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQ--GTACVAFVEMKGVAA 338

Query: 165 -QNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK----TNCSEL 202
                   +LGG  + + ++ +D    ++GF +    T C  L
Sbjct: 339 GDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLPHFTGCGGL 381
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 87 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 99.93
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 99.93
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.92
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 99.92
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 99.91
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 99.91
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 99.91
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 99.91
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 99.91
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 99.91
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 99.91
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 99.91
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 99.9
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 99.9
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 99.9
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 99.89
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 99.89
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 99.89
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 99.89
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 99.89
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 99.89
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 99.89
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 99.88
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 99.88
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 99.88
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 99.88
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 99.88
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 99.88
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 99.88
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 99.88
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 99.88
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 99.86
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 99.85
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 99.84
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.64
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 98.68
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 94.67
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 93.79
2ks1_B44 Epidermal growth factor receptor; ERBB1, ERBB2, tr 90.59
2l2t_A44 Receptor tyrosine-protein kinase ERBB-4; transmemb 89.06
2k9y_A41 Ephrin type-A receptor 2; receptor tyrosine kinase 85.94
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=99.93  E-value=9.2e-26  Score=230.63  Aligned_cols=172  Identities=23%  Similarity=0.394  Sum_probs=133.4

Q ss_pred             ceee-eeeEEccCcCCC---------CCCcEEEEEeEEEECCEEeecCCcccc----CCCcEEEecCCcceecCHHHHHH
Q 015256           22 RYGI-LPFRPFPQFLAG---------NSPYYNIELKELRVAGKPLKVSPRIFD----GGHGTVLDSGTTYAYLPGHAFAA   87 (410)
Q Consensus        22 ~~G~-~~~vPv~~~~~~---------~~~yY~V~L~gI~Vgg~~l~l~~~~f~----~~~~aIIDSGTT~t~LP~~vy~a   87 (410)
                      +.|+ +.|+|+...+..         ...||.|+|++|.||++.+.+++..|.    ++.++|||||||+++||+++|++
T Consensus       207 ~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~  286 (413)
T 3vla_A          207 VSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKA  286 (413)
T ss_dssp             ECTTTSEEEECBCCSSCCSSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHH
T ss_pred             ccCCceeEeecccCCccccccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHH
Confidence            4577 999999321100         127999999999999999988766553    45789999999999999999999


Q ss_pred             HHHHHHHhhh--hcccccCCCCCCccccCCCCccccccccCCCCeEEEEECC-CeEEEeCCCccEEEEcccCCceEEEEE
Q 015256           88 FKDALIKETH--VLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGN-GQKLTLSPENYLFRHMKVSGAYCLGIF  164 (410)
Q Consensus        88 Ii~aI~~~~~--~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~g-G~t~tI~p~~Yl~~~~~~~~~~Cl~i~  164 (410)
                      |+++|.+++.  .+++..+  ..+++.||+.....-.+.+..+|+|+|+|.+ +++|+|++++|+++..+  +.+|+++.
T Consensus       287 l~~a~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~--~~~Cl~~~  362 (413)
T 3vla_A          287 VTEAFIKESAARNITRVAS--VAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIND--NVVCLGVV  362 (413)
T ss_dssp             HHHHHHHHHHHTTCCEECC--CTTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEET--TEEEECEE
T ss_pred             HHHHHHHHhcccCCCcCCC--CCCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCC--CcEEEEEE
Confidence            9999998875  2333322  1346889965432111122479999999965 49999999999998653  67999887


Q ss_pred             EcCC---CCeEEcHHHhhcEEEEEeCCCCEEEEEec
Q 015256          165 QNSD---STTLLGGIVVRNTLVTYDRGNDKVGFWKT  197 (410)
Q Consensus       165 ~s~~---~~~ILG~~Fmr~~yVVFD~en~rIGFA~s  197 (410)
                      ....   +.||||+.|||++|+|||++|+|||||++
T Consensus       363 ~~~~~~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~  398 (413)
T 3vla_A          363 DGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGT  398 (413)
T ss_dssp             EEESSCSSSEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             ecCCCcccceeEehhhhcCeEEEEECCCCEEEEEEe
Confidence            6542   68999999999999999999999999985
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} Back     alignment and structure
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} Back     alignment and structure
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 410
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 4e-22
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 7e-19
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 1e-13
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 5e-13
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 2e-12
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-12
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 5e-12
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 6e-12
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 7e-12
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 3e-11
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 5e-11
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 5e-11
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 7e-11
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 1e-10
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 3e-10
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 7e-10
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 9e-10
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 3e-09
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 3e-09
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 6e-09
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 6e-09
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 2e-06
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 94.7 bits (234), Expect = 4e-22
 Identities = 33/206 (16%), Positives = 59/206 (28%), Gaps = 21/206 (10%)

Query: 15  WWDHSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSG 74
                            P    G SP + I  + + V    + V       G G +L + 
Sbjct: 179 GGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATG-GVMLSTR 237

Query: 75  TTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYD------DICFSGAGRDVSELSKTF 128
             Y  L    +    DA  K          P            +C+       +      
Sbjct: 238 LPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAV 297

Query: 129 PQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQ--------NSDSTTLLGGIVVRN 180
           P V +    G   T++ +N +       G  C+   +              +LGG  + +
Sbjct: 298 PNVQLGLDGGSDWTMTGKNSMVDVK--QGTACVAFVEMKGVAAGDGRAPAVILGGAQMED 355

Query: 181 TLVTYDRGNDKVGFWK----TNCSEL 202
            ++ +D    ++GF +    T C  L
Sbjct: 356 FVLDFDMEKKRLGFSRLPHFTGCGGL 381
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 99.91
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 99.89
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 99.88
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 99.88
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 99.88
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 99.88
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 99.88
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 99.87
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.87
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 99.87
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 99.87
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 99.86
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 99.86
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 99.86
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 99.84
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.84
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 99.83
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 99.83
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 99.83
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 99.82
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 99.82
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 99.82
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.91  E-value=4.9e-24  Score=207.70  Aligned_cols=156  Identities=16%  Similarity=0.254  Sum_probs=126.4

Q ss_pred             CCCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhh
Q 015256           18 HSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETH   97 (410)
Q Consensus        18 ~~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~   97 (410)
                      +.+.+.|++.|+|+     .+..+|.|++++|.|||..+..       +..+||||||++++||.++|++|.+++.+...
T Consensus       176 d~~~~~g~~~~~~~-----~~~~~~~v~l~~i~v~g~~~~~-------~~~aiiDSGt~~~~lp~~~~~~l~~~~~~~~~  243 (334)
T d1j71a_         176 DNAKYTGTLTALPV-----TSSVELRVHLGSINFDGTSVST-------NADVVLDSGTTITYFSQSTADKFARIVGATWD  243 (334)
T ss_dssp             ETTSEEEEEEEEEC-----CCSSSCEEEEEEEEETTEEEEE-------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEE
T ss_pred             ChhhcccceeEeee-----ccccceEEeeceEEECCEEecc-------cccccccCCCcceeccHHHHHHHHHHhCCEEc
Confidence            35668899999999     6778999999999999998752       35799999999999999999999988854332


Q ss_pred             hcccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcCCCCeEEcHHH
Q 015256           98 VLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIV  177 (410)
Q Consensus        98 ~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~~~~~ILG~~F  177 (410)
                      .      .     ..||   ..+|.   ...|.++|+|.+|++|+|++++|+++..  ++..|+..+.. .+.+|||+.|
T Consensus       244 ~------~-----~~~~---~~~~~---~~~p~i~f~f~~g~~~~i~~~~y~~~~~--~~~~C~~~i~~-~~~~ILG~~f  303 (334)
T d1j71a_         244 S------R-----NEIY---RLPSC---DLSGDAVFNFDQGVKITVPLSELILKDS--DSSICYFGISR-NDANILGDNF  303 (334)
T ss_dssp             T------T-----TTEE---ECSSS---CCCSEEEEEESTTCEEEEEGGGGEEECS--SSSCEEESEEE-CTTCEECHHH
T ss_pred             C------C-----CCee---ecccc---ccCCCceEEeCCCEEEEEChHHeEEecC--CCCEEEEEecC-CCCcEECHHh
Confidence            1      0     1121   11221   3579999999889999999999998754  36689877765 5678999999


Q ss_pred             hhcEEEEEeCCCCEEEEEecCCCccccc
Q 015256          178 VRNTLVTYDRGNDKVGFWKTNCSELWRR  205 (410)
Q Consensus       178 mr~~yVVFD~en~rIGFA~s~C~~~~~~  205 (410)
                      ||++|++||+||+|||||+++|++.++.
T Consensus       304 l~~~y~vfD~~n~~iGfA~~~~~~~~~v  331 (334)
T d1j71a_         304 LRRAYIVYDLDDKTISLAQVKYTSSSDI  331 (334)
T ss_dssp             HTTEEEEEETTTTEEEEEEECCCSCCCE
T ss_pred             hCcEEEEEECCCCEEEEEECCCCCcCCe
Confidence            9999999999999999999999986553
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure