Citrus Sinensis ID: 015258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
Protein Sequence
MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQSNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHEHHHHcccccHHHHHHHHHccccHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
menavdlsrnSVFYQmktgnqavgtdvqfGTLSKTLAssdinlsshivgsqsmplqkepqsnlisvssghrenwgesnmaeaspitdtstddtedknqrfergqltavaasdssdkskeksgdQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGifisssgdqshsmsgngaaAFDVEYSRWLEEHNRHIVELRAAvnshagdteLRTIVDNVTSHFDEIFRLKGIASKADVFHILSGmwktpaercfmwiggfrSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETlangspspsgtsgnvANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE
Flexible Loop (DISEMBL)
MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQSNLISVSSGHRENWgesnmaeaspitdtstddTEDKNQRfergqltavaasdssdkskeksgdqktlrRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAavnshagdtELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLangspspsgTSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRAlsslwlarpre
Low Complexity Region (SEG)
MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQSNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAAsdssdkskeksgdQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTqleqelqrarqqGIFIsssgdqshsmsGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANgspspsgtsgNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFsrlralsslwlarprE
Disordered region (IsUnstruct)
***********VFYQMKTGNQAVGTDVQFGTL**************************************************************************************************************************************************************AAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNL******************************************YMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWL*****
Disordered Region (DISOPRED)
**NAVDLSRN****************************************************************************************************************************************YVQQLESSRLKL*******************************AAAFDVEYSRWLEEHNRHIVEL*************RTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYN***************MDALQQSLAETLANG******************AMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLAR***
Disordered Region (DISEMBL)
MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGS**********SNLISVSSGHRENWGESNM*****************NQRFERGQLT*********************RRLAQ*****************QLESSRLKLTQLEQELQRARQQGIFIS***********NGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQS**********GMDALQQSLAET**********TSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE
Disordered Region (DISPRO)
****VDLSRNSVFYQM*TG*********F********************************************************************************************GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQS**MSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPS***TSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQSNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAARKSRLRxxxxxxxxxxxxxxxxxxxxxxxxxxxxGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	410	2.2.26 [Sep-21-2011]
O24160	456	TGACG-sequence-specific D	N/A	no	0.963	0.866	0.743	1e-172
Q41558	476	Transcription factor HBP-	N/A	no	0.995	0.857	0.709	1e-167
P23923	332	Transcription factor HBP-	N/A	no	0.807	0.996	0.807	1e-151
Q39140	330	Transcription factor TGA6	yes	no	0.802	0.996	0.753	1e-137
P43273	330	Transcription factor TGA2	no	no	0.804	1.0	0.759	1e-134
Q39163	330	Transcription factor TGA5	no	no	0.802	0.996	0.714	1e-128
Q9SX27	452	Transcription factor PERI	no	no	0.748	0.679	0.706	1e-119
Q39234	384	Transcription factor TGA3	no	no	0.717	0.765	0.582	5e-93
Q39162	364	Transcription factor TGA4	no	no	0.680	0.766	0.589	1e-91
Q93ZE2	368	Transcription factor TGA7	no	no	0.8	0.891	0.516	3e-89

>sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1

 Score =  606 bits (1562), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 304/409 (74%), Positives = 344/409 (84%), Gaps = 14/409 (3%)

Query: 3   NAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQSN 62
           +  +++R+ +F      N AVG +V  GT+++TLA S+ +L +    SQ+M LQ    SN
Sbjct: 58  DGANVNRSPLFNSTSATNPAVGFEVS-GTINRTLAPSNTSLPTATPRSQTMLLQ----SN 112

Query: 63  LISVSSGHRENWGESNMAEASPITDTSTD-DTEDKNQRFERGQLTAVAASDSSDKSKEKS 121
           L+S S  H ENWGESNMA++   TDTSTD D +DKNQ  E GQ        SSDKSKEK 
Sbjct: 113 LVSASGTHHENWGESNMADSGSRTDTSTDMDGDDKNQLIEAGQ--------SSDKSKEKV 164

Query: 122 GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQ 181
            DQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKL+QLEQ+LQRARQQG +IS+  DQ
Sbjct: 165 LDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQDLQRARQQGKYISNIADQ 224

Query: 182 SHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRL 241
           S+ +  NG  AFD EYSRWLEEHN+HI ELR AVN+HA D ELR+IV+NVT+HFDE+FR+
Sbjct: 225 SNGVGANGPLAFDAEYSRWLEEHNKHINELRTAVNAHASDPELRSIVNNVTAHFDEVFRV 284

Query: 242 KGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQ 301
           KG A+KADVFH+LSGMWKTPAERCFMWIGGFR SELLKLLVNQLEPLTEQQL GIYNLQQ
Sbjct: 285 KGNAAKADVFHVLSGMWKTPAERCFMWIGGFRPSELLKLLVNQLEPLTEQQLAGIYNLQQ 344

Query: 302 SSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLR 361
           SS QAEDALSQGM+ALQQSLAETLANGSP+P G+SG+VANYMGQMAMAMGKLGTLEGFLR
Sbjct: 345 SSHQAEDALSQGMEALQQSLAETLANGSPAPEGSSGDVANYMGQMAMAMGKLGTLEGFLR 404

Query: 362 QADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           QADNLRQQTLQQMHR+LTTRQSARALLAIN+YFSRLRALSSLWLARPRE
Sbjct: 405 QADNLRQQTLQQMHRVLTTRQSARALLAINEYFSRLRALSSLWLARPRE 453

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Nicotiana tabacum (taxid: 4097)

>sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2

 Score =  588 bits (1516), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 298/420 (70%), Positives = 349/420 (83%), Gaps = 12/420 (2%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTD-VQFGTLSKTLASSDINLSSHIV------GSQSM 53
           +E+  + S N++F  +K    A  +D +QFG   K+++ +D+  ++           Q++
Sbjct: 59  IEDLANFSTNNLF-NLKPNTHAYTSDPLQFGNYGKSISPTDLATTAAAAAAVTAVDPQAL 117

Query: 54  PLQKEPQSNLISVSSGHRENWGESNMAEASPITDTSTD---DTEDKNQRFERGQLTAVAA 110
             QK  Q NL+++ + + +NWGES+MA+ SP TDTSTD   D +++NQ FE+GQL A  A
Sbjct: 118 LQQKGVQPNLVALRTHNNDNWGESSMADTSPRTDTSTDPDIDIDERNQMFEQGQLAAPTA 177

Query: 111 SDSSDKSKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQ 170
           SDSSDKS++K  D K+LRRLAQNREAARKSRLRKKAY+Q LESSRLKLTQLEQELQRARQ
Sbjct: 178 SDSSDKSRDKL-DHKSLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQELQRARQ 236

Query: 171 QGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDN 230
           QGIFISSSGDQS S SGNGA AFD+EY+RWLEEHN+HI ELRAA N+HAGD +LR IVD+
Sbjct: 237 QGIFISSSGDQSQSASGNGAVAFDMEYARWLEEHNKHINELRAAANAHAGDDDLRKIVDS 296

Query: 231 VTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTE 290
           + S +DE FRLKG+A+KADVFH+LSGMWKTPAERCFMW+GGFRSSELLKLL  QLEPLTE
Sbjct: 297 IMSQYDEFFRLKGVAAKADVFHVLSGMWKTPAERCFMWLGGFRSSELLKLLAGQLEPLTE 356

Query: 291 QQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAM 350
           QQL GI NLQQSSQQAEDALSQGM+ALQQSLAETLA+GS  P+G+SGNVA+YMGQMAMAM
Sbjct: 357 QQLTGICNLQQSSQQAEDALSQGMEALQQSLAETLASGSLGPAGSSGNVASYMGQMAMAM 416

Query: 351 GKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           GKLGTLE FLRQADNLR QTLQQM RILTTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 417 GKLGTLENFLRQADNLRLQTLQQMQRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 476

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P23923|HBP1B_WHEAT Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1

 Score =  534 bits (1375), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/333 (80%), Positives = 296/333 (88%), Gaps = 2/333 (0%)

Query: 79  MAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAAR 138
           MAEASP T+TSTDDT D+N   E G       SDSSD+S++K+GDQKT+RRLAQNREAAR
Sbjct: 1   MAEASPRTETSTDDT-DENLMLEPGNAALAVVSDSSDRSRDKNGDQKTMRRLAQNREAAR 59

Query: 139 KSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYS 198
           KSRLRKKAYVQQLE+SRLKLTQLEQELQRARQQGIFISSS DQSHSMSGNGA AFD EY+
Sbjct: 60  KSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGIFISSSADQSHSMSGNGALAFDTEYA 119

Query: 199 RWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMW 258
           RWLEEHNR + ELRAAVN+HAGDTELR++V+ + SH+DEIF+ KG A+KADVFH+LSGMW
Sbjct: 120 RWLEEHNRQVNELRAAVNAHAGDTELRSVVEKIMSHYDEIFKQKGNAAKADVFHVLSGMW 179

Query: 259 KTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQ 318
           KTPAERCF+W+GGFR SELLKLL  QLEPLTEQQL GI NLQQSSQQAEDALSQGM+ALQ
Sbjct: 180 KTPAERCFLWLGGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAEDALSQGMEALQ 239

Query: 319 QSLAETLA-NGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRI 377
           QSLAETLA +   S SG++GNVANYMGQMAMAMGKLGTLE FL QADNLRQQTLQQM RI
Sbjct: 240 QSLAETLAGSIGSSGSGSTGNVANYMGQMAMAMGKLGTLENFLSQADNLRQQTLQQMQRI 299

Query: 378 LTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           LTTRQSARALL I+DY SRLRALSSLWLARP+E
Sbjct: 300 LTTRQSARALLVISDYSSRLRALSSLWLARPKE 332

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q39140|TGA6_ARATH Transcription factor TGA6 OS=Arabidopsis thaliana GN=TGA6 PE=1 SV=2

 Score =  490 bits (1261), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/333 (75%), Positives = 292/333 (87%), Gaps = 4/333 (1%)

Query: 79  MAEASPITDTSTD-DTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAA 137
           MA+ S  TD STD DT+ ++   +RG + A AASDSSD+SK+K  DQKTLRRLAQNREAA
Sbjct: 1   MADTSSRTDVSTDGDTDHRDLGSDRGHMHA-AASDSSDRSKDKL-DQKTLRRLAQNREAA 58

Query: 138 RKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEY 197
           RKSRLRKKAYVQQLE+SRLKLTQLEQELQRARQQG+FISSSGDQ+HS  GNGA AFD E+
Sbjct: 59  RKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISSSGDQAHSTGGNGALAFDAEH 118

Query: 198 SRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGM 257
           SRWLEE NR + ELR+A+N+HAGDTELR IVD V +H++E+FR+K  A+K DVFH+LSGM
Sbjct: 119 SRWLEEKNRQMNELRSALNAHAGDTELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGM 178

Query: 258 WKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDAL 317
           WKTPAERCF+W+GGFRSSELLKLL NQLEP+TE+Q++GI +LQQ+SQQAEDALSQGM++L
Sbjct: 179 WKTPAERCFLWLGGFRSSELLKLLANQLEPMTERQVMGINSLQQTSQQAEDALSQGMESL 238

Query: 318 QQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRI 377
           QQSLA+T  +     S +S NVA+YMGQMAMAMG+LGTLEGF+RQADNLR QTLQQM R+
Sbjct: 239 QQSLADT-LSSGTLGSSSSDNVASYMGQMAMAMGQLGTLEGFIRQADNLRLQTLQQMLRV 297

Query: 378 LTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           LTTRQSARALLAI+DY SRLRALSSLWLARPRE
Sbjct: 298 LTTRQSARALLAIHDYSSRLRALSSLWLARPRE 330

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P43273|TGA2_ARATH Transcription factor TGA2 OS=Arabidopsis thaliana GN=TGA2 PE=1 SV=1

 Score =  480 bits (1235), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/332 (75%), Positives = 287/332 (86%), Gaps = 2/332 (0%)

Query: 79  MAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAAR 138
           MA+ SP TD STDD  D       G L   AASDSSD+SK K  DQKTLRRLAQNREAAR
Sbjct: 1   MADTSPRTDVSTDDDTDHPDLGSEGALVNTAASDSSDRSKGKM-DQKTLRRLAQNREAAR 59

Query: 139 KSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYS 198
           KSRLRKKAYVQQLE+SRLKLTQLEQELQRARQQG+FIS +GDQ+HS  GNGA AFD E+S
Sbjct: 60  KSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISGTGDQAHSTGGNGALAFDAEHS 119

Query: 199 RWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMW 258
           RWLEE N+ + ELR+A+N+HAGD+ELR IVD V +H++E+FR+K  A+K DVFH+LSGMW
Sbjct: 120 RWLEEKNKQMNELRSALNAHAGDSELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMW 179

Query: 259 KTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQ 318
           KTPAERCF+W+GGFRSSELLKLL NQLEP+TE+QL+GI NLQQ+SQQAEDALSQGM++LQ
Sbjct: 180 KTPAERCFLWLGGFRSSELLKLLANQLEPMTERQLMGINNLQQTSQQAEDALSQGMESLQ 239

Query: 319 QSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRIL 378
           QSLA+T  +     S +SGNVA+YMGQMAMAMGKLGTLEGF+RQADNLR QTLQQM R+L
Sbjct: 240 QSLADT-LSSGTLGSSSSGNVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTLQQMIRVL 298

Query: 379 TTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           TTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 299 TTRQSARALLAIHDYFSRLRALSSLWLARPRE 330

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the C-boxes (5'-ATGACGTCAT-3') with high affinity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39163|TGA5_ARATH Transcription factor TGA5 OS=Arabidopsis thaliana GN=TGA5 PE=1 SV=2

 Score =  459 bits (1181), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 238/333 (71%), Positives = 277/333 (83%), Gaps = 4/333 (1%)

Query: 79  MAEASPITDTSTD-DTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAA 137
           M + SP T  STD DT+  N  F+ G L   A+  S     +   DQKTLRRLAQNREAA
Sbjct: 1   MGDTSPRTSVSTDGDTDHNNLMFDEGHLGIGASDSSDRSKSKM--DQKTLRRLAQNREAA 58

Query: 138 RKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEY 197
           RKSRLRKKAYVQQLE+SRLKLTQLEQELQRARQQG+FISSSGDQ+HS +G+GA AFDVEY
Sbjct: 59  RKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISSSGDQAHSTAGDGAMAFDVEY 118

Query: 198 SRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGM 257
            RW E+ NR + EL +A++SHA D+ELR IVD V +H++E++R+KG A+K+DVFH+LSGM
Sbjct: 119 RRWQEDKNRQMKELSSAIDSHATDSELRIIVDGVIAHYEELYRIKGNAAKSDVFHLLSGM 178

Query: 258 WKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDAL 317
           WKTPAERCF+W+GGFRSSELLKL+ +QLEPLTEQQ + I NLQQSSQQAEDALSQGMD L
Sbjct: 179 WKTPAERCFLWLGGFRSSELLKLIASQLEPLTEQQSLDINNLQQSSQQAEDALSQGMDNL 238

Query: 318 QQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRI 377
           QQSLA+T  +     S +SGNVA+YMGQMAMAMGKLGTLEGF+RQADNLR QT QQM R+
Sbjct: 239 QQSLADT-LSSGTLGSSSSGNVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTYQQMVRL 297

Query: 378 LTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           LTTRQSARALLA+++Y  RLRALSSLWLARPRE
Sbjct: 298 LTTRQSARALLAVHNYTLRLRALSSLWLARPRE 330

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX27|PAN_ARATH Transcription factor PERIANTHIA OS=Arabidopsis thaliana GN=PAN PE=1 SV=1

 Score =  429 bits (1104), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/310 (70%), Positives = 259/310 (83%), Gaps = 3/310 (0%)

Query: 103 GQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLE 162
           G    + A++ SD+S  KS DQ+TLRRLAQNREAARKSRLRKKAYVQQLE+SR++L QLE
Sbjct: 144 GHQGMLLATNCSDQSNVKSSDQRTLRRLAQNREAARKSRLRKKAYVQQLENSRIRLAQLE 203

Query: 163 QELQRARQQGIFI--SSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAG 220
           +EL+RARQQG  +    S D +H  +GNG  +F++EY+RW EEH R I +LR+ VNS  G
Sbjct: 204 EELKRARQQGSLVERGVSADHTHLAAGNGVFSFELEYTRWKEEHQRMINDLRSGVNSQLG 263

Query: 221 DTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKL 280
           D +LR +VD V SH+DEIFRLKGI +K DVFH+LSGMWKTPAER FMW+GGFRSSELLK+
Sbjct: 264 DNDLRVLVDAVMSHYDEIFRLKGIGTKVDVFHMLSGMWKTPAERFFMWLGGFRSSELLKI 323

Query: 281 LVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVA 340
           L N ++PLT+QQL+GI NLQQSSQQAEDALSQGM+ALQQSL ETL++ S  P+ +S NVA
Sbjct: 324 LGNHVDPLTDQQLIGICNLQQSSQQAEDALSQGMEALQQSLLETLSSASMGPN-SSANVA 382

Query: 341 NYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRAL 400
           +YMG MAMAMGKLGTLE FLRQAD LRQQTLQQ+HRILTTRQ+ARA L I+DY SRLRAL
Sbjct: 383 DYMGHMAMAMGKLGTLENFLRQADLLRQQTLQQLHRILTTRQAARAFLVIHDYISRLRAL 442

Query: 401 SSLWLARPRE 410
           SSLWLARPR+
Sbjct: 443 SSLWLARPRD 452

Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39234|TGA3_ARATH Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1

 Score =  341 bits (875), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 177/304 (58%), Positives = 226/304 (74%), Gaps = 10/304 (3%)

Query: 111 SDSSDKSKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQ 170
           S ++D+ +++  D K  RRLAQNREAARKSRLRKKA+VQQLE SRLKL+QLEQEL RARQ
Sbjct: 85  SSNNDQDEDRIND-KMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELVRARQ 143

Query: 171 QGIFISSSGDQSH-SMSGN---GAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRT 226
           QG+ + +S D S+   +GN   G AAF++EY+ WLEE NR + E+R A+ +H GD EL+ 
Sbjct: 144 QGLCVRNSSDTSYLGPAGNMNSGIAAFEMEYTHWLEEQNRRVSEIRTALQAHIGDIELKM 203

Query: 227 IVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLE 286
           +VD+  +H+  +FR+K  A+KADVF ++SGMW+T  ER F WIGGFR SELL +++  +E
Sbjct: 204 LVDSCLNHYANLFRMKADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSELLNVVMPYVE 263

Query: 287 PLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQM 346
           PLT+QQL+ + NLQQSSQQAE+ALSQG+D LQQ L E++A              N+   M
Sbjct: 264 PLTDQQLLEVRNLQQSSQQAEEALSQGLDKLQQGLVESIAIQIKVVESV-----NHGAPM 318

Query: 347 AMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLA 406
           A AM  L  LE F+ QAD+LRQQTLQQM +ILTTRQ+AR LLA+ +YF RLRALSSLW A
Sbjct: 319 ASAMENLQALESFVNQADHLRQQTLQQMSKILTTRQAARGLLALGEYFHRLRALSSLWAA 378

Query: 407 RPRE 410
           RPRE
Sbjct: 379 RPRE 382

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39162|TGA4_ARATH Transcription factor TGA4 OS=Arabidopsis thaliana GN=TGA4 PE=1 SV=2

 Score =  337 bits (864), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 171/290 (58%), Positives = 214/290 (73%), Gaps = 11/290 (3%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD-QSH 183
           K  RRLAQNREAARKSRLRKKAYVQQLE+SRLKL  LEQEL RARQQG ++ +  D  + 
Sbjct: 80  KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIHLEQELDRARQQGFYVGNGVDTNAL 139

Query: 184 SMSGN---GAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
           S S N   G  AF++EY  W+EE NR I ELR  ++    D ELR++V+N   H+ ++FR
Sbjct: 140 SFSDNMSSGIVAFEMEYGHWVEEQNRQICELRTVLHGQVSDIELRSLVENAMKHYFQLFR 199

Query: 241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQ 300
           +K  A+K DVF+++SGMWKT AER F+WIGGFR SELLK+L+   +PLT+QQL+ + NL+
Sbjct: 200 MKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPSELLKVLLPHFDPLTDQQLLDVCNLR 259

Query: 301 QSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFL 360
           QS QQAEDALSQGM+ LQ +LAE++A      +G  G   +Y+ QM  AM +L  L  F+
Sbjct: 260 QSCQQAEDALSQGMEKLQHTLAESVA------AGKLGE-GSYIPQMTCAMERLEALVSFV 312

Query: 361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
            QAD+LR +TLQQMHRILTTRQ+AR LLA+ +YF RLRALSS W AR RE
Sbjct: 313 NQADHLRHETLQQMHRILTTRQAARGLLALGEYFQRLRALSSSWAARQRE 362

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZE2|TGA7_ARATH Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1

 Score =  329 bits (843), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 176/341 (51%), Positives = 233/341 (68%), Gaps = 13/341 (3%)

Query: 70  HRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRR 129
           H  N   S++ +  P  D   ++ +  N      Q+ A   S + ++  +     K  RR
Sbjct: 39  HSPNTATSSIIQVDPRIDDHNNNIK-INYDSSHNQIEAEQPSSNDNQDDDGRIHDKMKRR 97

Query: 130 LAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNG 189
           LAQNREAARKSRLRKKAYVQQLE SRLKL+QLEQEL++ +QQG  +  SG         G
Sbjct: 98  LAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQELEKVKQQG-HLGPSGS-----INTG 151

Query: 190 AAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKAD 249
            A+F++EYS WL+E +R + ELR A+ SH  D EL+ +V++  +H+  +F++K  A+KAD
Sbjct: 152 IASFEMEYSHWLQEQSRRVSELRTALQSHISDIELKMLVESCLNHYANLFQMKSDAAKAD 211

Query: 250 VFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDA 309
           VF+++SGMW+T  ER F WIGGFR SELL +++  L+PLT+QQ++ + NLQQSSQQAEDA
Sbjct: 212 VFYLISGMWRTSTERFFQWIGGFRPSELLNVVMPYLQPLTDQQILEVRNLQQSSQQAEDA 271

Query: 310 LSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQ 369
           LSQG+D LQQSLAE++   +   S       +Y   MA A+  L  LEGF+ QAD+LRQQ
Sbjct: 272 LSQGIDKLQQSLAESIVIDAVIES------THYPTHMAAAIENLQALEGFVNQADHLRQQ 325

Query: 370 TLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           TLQQM +ILTTRQSAR LLA+ +Y  RLRALSSLW ARP+E
Sbjct: 326 TLQQMAKILTTRQSARGLLALGEYLHRLRALSSLWAARPQE 366

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	410
224139726	463	predicted protein [Populus trichocarpa]	1.0	0.885	0.868	0.0
388522283	461	unknown [Lotus japonicus]	0.970	0.863	0.819	0.0
357509409	452	TGA transcription factor [Medicago trunc	0.973	0.882	0.814	0.0
357509411	395	TGA transcription factor [Medicago trunc	0.963	1.0	0.817	0.0
449437717	470	PREDICTED: TGACG-sequence-specific DNA-b	0.990	0.863	0.801	0.0
449506021	471	PREDICTED: LOW QUALITY PROTEIN: TGACG-se	0.990	0.861	0.799	0.0
359482245	451	PREDICTED: TGACG-sequence-specific DNA-b	0.958	0.871	0.815	0.0
15148926	460	TGA-type basic leucine zipper protein TG	0.975	0.869	0.821	0.0
255543929	463	Transcription factor HBP-1b(c1), putativ	0.997	0.883	0.791	1e-178
359487138	469	PREDICTED: transcription factor HBP-1b(c	0.997	0.872	0.788	1e-177

>gi|224139726|ref|XP_002323247.1| predicted protein [Populus trichocarpa] gi|222867877|gb|EEF05008.1| predicted protein [Populus trichocarpa]

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/410 (86%), Positives = 386/410 (94%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQ 60
           +E+AVDLSRN +F+Q+K+  QA+GTDVQFGTL+K LASSDINLS+ +VGSQS+PLQKE Q
Sbjct: 54  IEDAVDLSRNPLFHQLKSSGQAIGTDVQFGTLNKPLASSDINLSAAVVGSQSLPLQKEVQ 113

Query: 61  SNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEK 120
            N +S+   H ENWGE++MAEASP TDTSTDDT+DKNQRFERGQ TA+ ASDSSDKSKEK
Sbjct: 114 VNPVSIPGNHPENWGETSMAEASPRTDTSTDDTDDKNQRFERGQSTAIVASDSSDKSKEK 173

Query: 121 SGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD 180
           +GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD
Sbjct: 174 AGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD 233

Query: 181 QSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
           Q+HSMSGNGA AFD EYSRWLEE NRHI ELRAAVNSHAGDTEL TIVDNV +HF+E++R
Sbjct: 234 QTHSMSGNGALAFDAEYSRWLEEQNRHISELRAAVNSHAGDTELHTIVDNVVAHFNEVYR 293

Query: 241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQ 300
           LKG A+KADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQL+GIYNLQ
Sbjct: 294 LKGTAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLMGIYNLQ 353

Query: 301 QSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFL 360
           QSSQQAEDALSQGM+ALQQSLAETLANG+P  SG+SGNVANYMGQMAMAMGKLGTLEGFL
Sbjct: 354 QSSQQAEDALSQGMEALQQSLAETLANGNPGSSGSSGNVANYMGQMAMAMGKLGTLEGFL 413

Query: 361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           RQADNLRQQTL+QMHRILTTRQSARALLAINDYFSRLRALSSLWLARP+E
Sbjct: 414 RQADNLRQQTLEQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPQE 463

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522283|gb|AFK49203.1| unknown [Lotus japonicus]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/410 (81%), Positives = 370/410 (90%), Gaps = 12/410 (2%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQ 60
           +E+ ++LSRN VF QMK+ +QA+G D+QFG LSK++A+SD NLS+ I GSQ MPLQK+ Q
Sbjct: 64  IEDTMNLSRNPVFNQMKSNSQALGADIQFGALSKSIATSDNNLSAAIAGSQMMPLQKDSQ 123

Query: 61  SNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEK 120
            NL S S GHRENWGESN  +ASP   TSTDDT+DKNQ  ERG        +SSD+SK+K
Sbjct: 124 PNLASTSGGHRENWGESNTGDASP---TSTDDTDDKNQMVERG--------ESSDRSKDK 172

Query: 121 SGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD 180
           + DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISS+G+
Sbjct: 173 T-DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGE 231

Query: 181 QSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
           Q+HSMSGNGA AFDVEY+RWLEEHNRH  ELRAA+NSHAGD ELRTIVDN  + FD++FR
Sbjct: 232 QAHSMSGNGAIAFDVEYARWLEEHNRHTNELRAAINSHAGDIELRTIVDNFMTQFDDLFR 291

Query: 241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQ 300
           LKGIA+KADVFHILSGMWKTPAERCFMWIGGFRSSE+LKLLVNQLEPLTEQQL+GIYNLQ
Sbjct: 292 LKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKLLVNQLEPLTEQQLMGIYNLQ 351

Query: 301 QSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFL 360
           QSSQQAEDALSQGMDALQQSL+ETLANGSP+PSG+SGNVANYMGQMAMAMGKLGTL GFL
Sbjct: 352 QSSQQAEDALSQGMDALQQSLSETLANGSPNPSGSSGNVANYMGQMAMAMGKLGTLAGFL 411

Query: 361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           RQADNLRQQTLQQM RILTTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 412 RQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 461

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509409|ref|XP_003624993.1| TGA transcription factor [Medicago truncatula] gi|355500008|gb|AES81211.1| TGA transcription factor [Medicago truncatula]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/410 (81%), Positives = 368/410 (89%), Gaps = 11/410 (2%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQ 60
           +E+A++LSRN VF QMK  +QA+G D+QFG LSK++A+SDINLS+ I GSQ++ LQK+  
Sbjct: 54  VEDAMNLSRNPVFNQMKANSQALGADIQFGALSKSIANSDINLSAAIAGSQTLQLQKDAM 113

Query: 61  SNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEK 120
            NL S S GHRENWGESNMAE S   DTSTDDTEDKNQ  ERG        +SS++SK+K
Sbjct: 114 PNLASTSGGHRENWGESNMAEGS--ADTSTDDTEDKNQMPERG--------ESSERSKDK 163

Query: 121 SGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD 180
           S DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISS+G+
Sbjct: 164 S-DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGE 222

Query: 181 QSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
           Q+HSMSGNGA AFD EY+RWLEEHNR   ELRAA+NSHAGD ELRTIVDN  + F++I+R
Sbjct: 223 QTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYR 282

Query: 241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQ 300
           LKG+A+KADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLV+ LEPLTEQQL+GIYNLQ
Sbjct: 283 LKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSHLEPLTEQQLMGIYNLQ 342

Query: 301 QSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFL 360
           QSSQQAEDALSQGMDALQQSL+ETLANGSP+PSG SGNVANYMGQMAMAMGKLGTLEGFL
Sbjct: 343 QSSQQAEDALSQGMDALQQSLSETLANGSPNPSGASGNVANYMGQMAMAMGKLGTLEGFL 402

Query: 361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           RQADNLRQQTLQQM RILTTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 403 RQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 452

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509411|ref|XP_003624994.1| TGA transcription factor [Medicago truncatula] gi|355500009|gb|AES81212.1| TGA transcription factor [Medicago truncatula]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/406 (81%), Positives = 364/406 (89%), Gaps = 11/406 (2%)

Query: 5   VDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQSNLI 64
           ++LSRN VF QMK  +QA+G D+QFG LSK++A+SDINLS+ I GSQ++ LQK+   NL 
Sbjct: 1   MNLSRNPVFNQMKANSQALGADIQFGALSKSIANSDINLSAAIAGSQTLQLQKDAMPNLA 60

Query: 65  SVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQ 124
           S S GHRENWGESNMAE S   DTSTDDTEDKNQ  ERG        +SS++SK+KS DQ
Sbjct: 61  STSGGHRENWGESNMAEGS--ADTSTDDTEDKNQMPERG--------ESSERSKDKS-DQ 109

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHS 184
           KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISS+G+Q+HS
Sbjct: 110 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHS 169

Query: 185 MSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGI 244
           MSGNGA AFD EY+RWLEEHNR   ELRAA+NSHAGD ELRTIVDN  + F++I+RLKG+
Sbjct: 170 MSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGV 229

Query: 245 ASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQ 304
           A+KADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLV+ LEPLTEQQL+GIYNLQQSSQ
Sbjct: 230 AAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSHLEPLTEQQLMGIYNLQQSSQ 289

Query: 305 QAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQAD 364
           QAEDALSQGMDALQQSL+ETLANGSP+PSG SGNVANYMGQMAMAMGKLGTLEGFLRQAD
Sbjct: 290 QAEDALSQGMDALQQSLSETLANGSPNPSGASGNVANYMGQMAMAMGKLGTLEGFLRQAD 349

Query: 365 NLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           NLRQQTLQQM RILTTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 350 NLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 395

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437717|ref|XP_004136637.1| PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Cucumis sativus]

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/408 (80%), Positives = 372/408 (91%), Gaps = 2/408 (0%)

Query: 5   VDLSRNSVFYQMKTGNQAVGTDVQFGTLS--KTLASSDINLSSHIVGSQSMPLQKEPQSN 62
           VDL+RN ++ Q+K+ +  +  ++QFG+L+  + LAS+D+NL + ++GSQ++PLQKE  +N
Sbjct: 63  VDLTRNPLYNQIKSNSSTMNNNIQFGSLNGIQPLASTDVNLPTAVMGSQTLPLQKESNAN 122

Query: 63  LISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSG 122
           L+S S G RENWGESNMA+ S  TDTSTDDT+DK+QR ++ Q  ++A  DSS+KSKEK+ 
Sbjct: 123 LVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAVYDSSNKSKEKTA 182

Query: 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQS 182
           DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFIS+SGDQ+
Sbjct: 183 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQA 242

Query: 183 HSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLK 242
           HSMSGNGA AFDVEYSRWLEEHNR + ELRAAVNSHAGDTELRTIVDNVT+ FD+IFRLK
Sbjct: 243 HSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLK 302

Query: 243 GIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQS 302
           GIA+KADVFHILSGMWKTPAERCF+WIGGFRSSE+LKLLV+QLEPL EQQL+GI NLQQ 
Sbjct: 303 GIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLAEQQLMGICNLQQL 362

Query: 303 SQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQ 362
           SQQAEDALSQGMDALQQSLAETLA+ +P+ SG+SGNVANYMGQMAMAMGKLGTLEGFLRQ
Sbjct: 363 SQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQ 422

Query: 363 ADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           ADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPR+
Sbjct: 423 ADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD 470

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506021|ref|XP_004162630.1| PREDICTED: LOW QUALITY PROTEIN: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Cucumis sativus]

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/409 (79%), Positives = 372/409 (90%), Gaps = 3/409 (0%)

Query: 5   VDLSRNSVFYQMKTGNQAVGTDVQFGTLS--KTLASSDINLSSHIVGSQSMPLQKEPQSN 62
           VDL+RN ++ Q+K+ +  +  ++QFG+L+  + LAS+D+NL + ++GSQ++PLQKE  +N
Sbjct: 63  VDLTRNPLYNQIKSNSSTMNNNIQFGSLNGIQPLASTDVNLPTAVMGSQTLPLQKESNAN 122

Query: 63  LISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSG 122
           L+S S G RENWGESNMA+ S  TDTSTDDT+DK+QR ++ Q  ++A  DSS+KSKEK+ 
Sbjct: 123 LVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAVYDSSNKSKEKTA 182

Query: 123 DQKTLRRLAQNREAARKSRLRKK-AYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQ 181
           DQKTLRRLAQNREAARKSRLRKK AYVQQLESSRLKLTQLEQELQRARQQGIFIS+SGDQ
Sbjct: 183 DQKTLRRLAQNREAARKSRLRKKXAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQ 242

Query: 182 SHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRL 241
           +HSMSGNGA AFDVEYSRWLEEHNR + ELRAAVNSHAGDTELRTIVDNVT+ FD+IFRL
Sbjct: 243 AHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRL 302

Query: 242 KGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQ 301
           KGIA+KADVFHILSGMWKTPAERCF+WIGGFRSSE+LKLLV+QLEPL EQQL+GI NLQQ
Sbjct: 303 KGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLAEQQLMGICNLQQ 362

Query: 302 SSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLR 361
            SQQAEDALSQGMDALQQSLAETLA+ +P+ SG+SGNVANYMGQMAMAMGKLGTLEGFLR
Sbjct: 363 LSQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLR 422

Query: 362 QADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           QADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPR+
Sbjct: 423 QADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482245|ref|XP_003632741.1| PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Vitis vinifera] gi|297739945|emb|CBI30127.3| unnamed protein product [Vitis vinifera]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/411 (81%), Positives = 362/411 (88%), Gaps = 18/411 (4%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQ 60
           +E+AVDLSRNSVF   K  +QA  TD+QFG L+KT                   +QKE Q
Sbjct: 58  IEDAVDLSRNSVFNSAKPSSQAPSTDLQFGALNKT-----------------STVQKELQ 100

Query: 61  SNLISVSSGHRENWGESNMAEASP-ITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKE 119
            N+ SVS  HRENWGESNMA+ASP    ++  DT++KNQRFE GQ  A+ ASDSSD+SKE
Sbjct: 101 QNIASVSGSHRENWGESNMADASPRTDTSTDVDTDEKNQRFEMGQSAALVASDSSDRSKE 160

Query: 120 KSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSG 179
           K+GDQKTLRRLAQNREAARKSRLRKKAYVQQLE+SR+KLTQLEQELQRARQQGIFISSSG
Sbjct: 161 KAGDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRMKLTQLEQELQRARQQGIFISSSG 220

Query: 180 DQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIF 239
           DQSHSMSGNGA AFDVEY+RWLEEHNR I ELR+AVNSHA DTELRTIVDNVT+HFD+IF
Sbjct: 221 DQSHSMSGNGALAFDVEYARWLEEHNRQINELRSAVNSHASDTELRTIVDNVTAHFDDIF 280

Query: 240 RLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNL 299
           RLKGIA+KADVFHILSGMWKTPAERCFMWIGGFRSSE+LKLLVNQLEPLTEQQL+ IYNL
Sbjct: 281 RLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSEVLKLLVNQLEPLTEQQLMSIYNL 340

Query: 300 QQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGF 359
           QQSSQQAEDALSQGM+ALQQSLAETL +GSP PSG+SGNVANYMGQMAMAMGKLGTLEGF
Sbjct: 341 QQSSQQAEDALSQGMEALQQSLAETLTSGSPGPSGSSGNVANYMGQMAMAMGKLGTLEGF 400

Query: 360 LRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           LRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE
Sbjct: 401 LRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15148926|gb|AAK84890.1|AF402609_1 TGA-type basic leucine zipper protein TGA2.2 [Phaseolus vulgaris]

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/410 (82%), Positives = 371/410 (90%), Gaps = 10/410 (2%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQ 60
           +E+ ++LSRN VF QMK+ +QA+G D+QFG L+K++ +SDINLS+ I GSQ++ LQK+ Q
Sbjct: 61  VEDTINLSRNPVFSQMKSNSQALGADIQFGALNKSIVTSDINLSAAIAGSQTLALQKDAQ 120

Query: 61  SNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEK 120
             L S +SGHRENWGE+NMA+ASP TDTSTDDTEDKNQ  ERG        +SSD+SK+K
Sbjct: 121 PTLAS-TSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERG--------ESSDRSKDK 171

Query: 121 SGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD 180
           S DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISS+GD
Sbjct: 172 S-DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGD 230

Query: 181 QSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
           Q+ SMSGNGA AFDVEY+RWLEEHNR   ELRAA+NSHAGD ELRTIVDN  + FD+IFR
Sbjct: 231 QAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFR 290

Query: 241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQ 300
           LKGIA+KADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLV+ LEPLTEQQL+GIYNLQ
Sbjct: 291 LKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSHLEPLTEQQLMGIYNLQ 350

Query: 301 QSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFL 360
           QSSQQAEDALSQGMDALQQSL+ETLANGSPS SG+SGNVANYMGQMAMAMGKLGTLEGFL
Sbjct: 351 QSSQQAEDALSQGMDALQQSLSETLANGSPSSSGSSGNVANYMGQMAMAMGKLGTLEGFL 410

Query: 361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           RQADNLRQQTLQQM RILTTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 411 RQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 460

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543929|ref|XP_002513027.1| Transcription factor HBP-1b(c1), putative [Ricinus communis] gi|223548038|gb|EEF49530.1| Transcription factor HBP-1b(c1), putative [Ricinus communis]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 326/412 (79%), Positives = 363/412 (88%), Gaps = 3/412 (0%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTD-VQFGTLSKTLASSDINLSSHIVGSQSMPLQKEP 59
           +E+AVDLS N+VF   K  NQA  +D +  G+  K  AS +IN S   + SQ +PL+K  
Sbjct: 53  LEDAVDLSTNTVFNSAKANNQADTSDPLHIGSFDKLTASFNINPSPAQLESQRLPLEKGQ 112

Query: 60  QSNLISVSSGHRENWGESNMAEASPITDTSTD-DTEDKNQRFERGQLTAVAASDSSDKSK 118
           Q N+I++SSG+ ENW ESNMA+ SP TD STD DT+DKNQRF+RG  TA+AASDSSD+SK
Sbjct: 113 QLNIIALSSGNTENWEESNMADGSPRTDLSTDGDTDDKNQRFDRGLSTAIAASDSSDRSK 172

Query: 119 EKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSS 178
           +K  DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSS
Sbjct: 173 DKM-DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSS 231

Query: 179 GDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEI 238
           GDQ+HSMSGNGA AFDVEY+RWLEE NR I ELR+AVNSHAGD ELR I+D V +H+DEI
Sbjct: 232 GDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHAGDAELRIIIDGVMAHYDEI 291

Query: 239 FRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYN 298
           FRLK  A+KADVFH+LSGMWKTPAERCF+W+GGFRSSELLKLLVNQLEPLTEQQLVG+ N
Sbjct: 292 FRLKSNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGLGN 351

Query: 299 LQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEG 358
           LQQSSQQAEDALSQGM+ALQQSLAETL++GS   SG+SGNVANYMGQMAMAMGKLGTLEG
Sbjct: 352 LQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEG 411

Query: 359 FLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           F+RQADNLRQQTLQQMHRILTTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 412 FIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487138|ref|XP_002263159.2| PREDICTED: transcription factor HBP-1b(c1)-like [Vitis vinifera] gi|296087850|emb|CBI35106.3| unnamed protein product [Vitis vinifera]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 325/412 (78%), Positives = 363/412 (88%), Gaps = 3/412 (0%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTD-VQFGTLSKTLASSDINLSSHIVGSQSMPLQKEP 59
           +E+AVDLS ++ F   K   +AV +D +   T  K+  S DIN S+  V SQ +PLQK  
Sbjct: 59  LEDAVDLSGSTAFNSTKPSGRAVTSDPLHSVTFDKSQNSFDINPSAARVESQRLPLQKGQ 118

Query: 60  QSNLISVSSGHRENWGESNMAEASPITDTSTD-DTEDKNQRFERGQLTAVAASDSSDKSK 118
           QSNL+S+SSG  ENWGES MA+ASP TD STD DT+DK QRFERGQ  +  ASDSSD+SK
Sbjct: 119 QSNLVSISSGSVENWGESAMADASPRTDISTDVDTDDKVQRFERGQPASNMASDSSDRSK 178

Query: 119 EKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSS 178
           +K+ DQKTLRRLAQNREAARKSRLRKKAYVQQLESSR+KLTQLEQELQRARQQGIFISSS
Sbjct: 179 DKN-DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISSS 237

Query: 179 GDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEI 238
           GDQ+HSMSGNGA AFDVEY+RWLEE NR I ELR+AVNSHA D ELR IVDN+ +H+D+I
Sbjct: 238 GDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHASDAELRVIVDNIMAHYDDI 297

Query: 239 FRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYN 298
           FRLKG+A+KADVFH+LSGMWKTPAERCF+W+GGFRSSELLKLLVNQLEPLTEQQL+GI N
Sbjct: 298 FRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLLGIGN 357

Query: 299 LQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEG 358
           LQQSSQQAEDALSQGM+ALQQSLAETL++GS   SG+SGNVANYMGQMAMAMGKLGTLEG
Sbjct: 358 LQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEG 417

Query: 359 FLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 410
           F+RQADNLRQQTLQQMHRILTTRQSARALLAI+DYFSRLRALSSLWLARPRE
Sbjct: 418 FIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	410
UNIPROTKB|Q9SQK1	325	TGA2.2 "BZIP transcription fac	0.751	0.947	0.719	1.3e-109
TAIR|locus:2169394	330	AHBP-1B "AT5G06950" [Arabidops	0.765	0.951	0.655	2e-102
TAIR|locus:2082234	355	TGA6 "AT3G12250" [Arabidopsis	0.707	0.816	0.662	1.4e-99
TAIR|locus:2169409	330	OBF5 "AT5G06960" [Arabidopsis	0.760	0.945	0.629	9.4e-98
TAIR|locus:2026890	452	PAN "AT1G68640" [Arabidopsis t	0.768	0.696	0.615	3e-94
TAIR|locus:2199968	481	TGA9 "AT1G08320" [Arabidopsis	0.634	0.540	0.577	3.4e-77
TAIR|locus:2030551	384	TGA3 "AT1G22070" [Arabidopsis	0.646	0.690	0.532	1.3e-68
TAIR|locus:2184078	364	TGA4 "AT5G10030" [Arabidopsis	0.641	0.722	0.521	1.7e-68
TAIR|locus:2029366	368	TGA7 "AT1G77920" [Arabidopsis	0.758	0.845	0.466	1.9e-67
TAIR|locus:2171820	368	TGA1 "AT5G65210" [Arabidopsis	0.641	0.714	0.514	2.8e-66

UNIPROTKB|Q9SQK1 TGA2.2 "BZIP transcription factor" [Nicotiana tabacum (taxid:4097)]

 Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
 Identities = 228/317 (71%), Positives = 247/317 (77%)

Query:    79 MAEASPITDTSTD-DTEDKNQRFERGQLTAVAAXXXXXXXXXXXXXQKTLRRLAQNREAA 137
             MA+ SP   TSTD DTEDKN+     QL AVA+             QKTLRRLAQNREAA
Sbjct:     1 MADISP--STSTDADTEDKNRFLNSQQLGAVASDGSDRTRD-----QKTLRRLAQNREAA 53

Query:   138 RKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXXXXGNGAAAFDVEY 197
             RKSRLRKKAYVQQLESSR+KLT            GIFI           GNGA AFDVEY
Sbjct:    54 RKSRLRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISGSGDQSQSMSGNGALAFDVEY 113

Query:   198 SRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGM 257
             +RWLEE NR I ELR AVNSHAGD ELR IVD + +H+D+IFR+KG A+K+DVFHILSGM
Sbjct:   114 ARWLEEQNRRINELRGAVNSHAGDGELRIIVDGILAHYDDIFRIKGDAAKSDVFHILSGM 173

Query:   258 WKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDAL 317
             WKTPAERCF+W+GGFRSSELLKLL+NQLEPLTEQQL+ I NLQQSSQQAEDALSQGM+AL
Sbjct:   174 WKTPAERCFLWLGGFRSSELLKLLINQLEPLTEQQLLAINNLQQSSQQAEDALSQGMEAL 233

Query:   318 QQSLAETLANXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRI 377
             QQSLAETLA           NVANYMGQMAMAMGKLGTLEGF+RQADNLRQQTLQQMHRI
Sbjct:   234 QQSLAETLAGSLGPSSSSG-NVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRI 292

Query:   378 LTTRQSARALLAINDYF 394
             LTTRQSARALLAI+DYF
Sbjct:   293 LTTRQSARALLAISDYF 309

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2169394 AHBP-1B "AT5G06950" [Arabidopsis thaliana (taxid:3702)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 207/316 (65%), Positives = 239/316 (75%)

Query:    79 MAEASPITDTSTDDTEDKNQRFERGQLTAVAAXXXXXXXXXXXXXQKTLRRLAQNREAAR 138
             MA+ SP TD STDD  D       G L   AA             QKTLRRLAQNREAAR
Sbjct:     1 MADTSPRTDVSTDDDTDHPDLGSEGALVNTAASDSSDRSKGKMD-QKTLRRLAQNREAAR 59

Query:   139 KSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXXXXGNGAAAFDVEYS 198
             KSRLRKKAYVQQLE+SRLKLT            G+FI           GNGA AFD E+S
Sbjct:    60 KSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISGTGDQAHSTGGNGALAFDAEHS 119

Query:   199 RWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMW 258
             RWLEE N+ + ELR+A+N+HAGD+ELR IVD V +H++E+FR+K  A+K DVFH+LSGMW
Sbjct:   120 RWLEEKNKQMNELRSALNAHAGDSELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMW 179

Query:   259 KTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQ 318
             KTPAERCF+W+GGFRSSELLKLL NQLEP+TE+QL+GI NLQQ+SQQAEDALSQGM++LQ
Sbjct:   180 KTPAERCFLWLGGFRSSELLKLLANQLEPMTERQLMGINNLQQTSQQAEDALSQGMESLQ 239

Query:   319 QSLAETLANXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRIL 378
             QSLA+TL++          NVA+YMGQMAMAMGKLGTLEGF+RQADNLR QTLQQM R+L
Sbjct:   240 QSLADTLSSGTLGSSSSG-NVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTLQQMIRVL 298

Query:   379 TTRQSARALLAINDYF 394
             TTRQSARALLAI+DYF
Sbjct:   299 TTRQSARALLAIHDYF 314

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

TAIR|locus:2082234 TGA6 "AT3G12250" [Arabidopsis thaliana (taxid:3702)]

 Score = 963 (344.1 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
 Identities = 194/293 (66%), Positives = 229/293 (78%)

Query:   101 ERGQLTAVAAXXXXXXXXXXXXXQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTX 160
             +RG + A A+             QKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT 
Sbjct:    49 DRGHMHAAASDSSDRSKDKLD--QKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQ 106

Query:   161 XXXXXXXXXXXGIFIXXXXXXXXXXXGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAG 220
                        G+FI           GNGA AFD E+SRWLEE NR + ELR+A+N+HAG
Sbjct:   107 LEQELQRARQQGVFISSSGDQAHSTGGNGALAFDAEHSRWLEEKNRQMNELRSALNAHAG 166

Query:   221 DTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKL 280
             DTELR IVD V +H++E+FR+K  A+K DVFH+LSGMWKTPAERCF+W+GGFRSSELLKL
Sbjct:   167 DTELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKL 226

Query:   281 LVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANXXXXXXXXXXNVA 340
             L NQLEP+TE+Q++GI +LQQ+SQQAEDALSQGM++LQQSLA+TL++          NVA
Sbjct:   227 LANQLEPMTERQVMGINSLQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSSSSD-NVA 285

Query:   341 NYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDY 393
             +YMGQMAMAMG+LGTLEGF+RQADNLR QTLQQM R+LTTRQSARALLAI+DY
Sbjct:   286 SYMGQMAMAMGQLGTLEGFIRQADNLRLQTLQQMLRVLTTRQSARALLAIHDY 338

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2169409 OBF5 "AT5G06960" [Arabidopsis thaliana (taxid:3702)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 199/316 (62%), Positives = 235/316 (74%)

Query:    79 MAEASPITDTSTD-DTEDKNQRFERGQLTAVAAXXXXXXXXXXXXXQKTLRRLAQNREAA 137
             M + SP T  STD DT+  N  F+ G L  + A             QKTLRRLAQNREAA
Sbjct:     1 MGDTSPRTSVSTDGDTDHNNLMFDEGHL-GIGASDSSDRSKSKMD-QKTLRRLAQNREAA 58

Query:   138 RKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXXXXGNGAAAFDVEY 197
             RKSRLRKKAYVQQLE+SRLKLT            G+FI           G+GA AFDVEY
Sbjct:    59 RKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISSSGDQAHSTAGDGAMAFDVEY 118

Query:   198 SRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGM 257
              RW E+ NR + EL +A++SHA D+ELR IVD V +H++E++R+KG A+K+DVFH+LSGM
Sbjct:   119 RRWQEDKNRQMKELSSAIDSHATDSELRIIVDGVIAHYEELYRIKGNAAKSDVFHLLSGM 178

Query:   258 WKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDAL 317
             WKTPAERCF+W+GGFRSSELLKL+ +QLEPLTEQQ + I NLQQSSQQAEDALSQGMD L
Sbjct:   179 WKTPAERCFLWLGGFRSSELLKLIASQLEPLTEQQSLDINNLQQSSQQAEDALSQGMDNL 238

Query:   318 QQSLAETLANXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRI 377
             QQSLA+TL++          NVA+YMGQMAMAMGKLGTLEGF+RQADNLR QT QQM R+
Sbjct:   239 QQSLADTLSSGTLGSSSSG-NVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTYQQMVRL 297

Query:   378 LTTRQSARALLAINDY 393
             LTTRQSARALLA+++Y
Sbjct:   298 LTTRQSARALLAVHNY 313

GO:0003677 "DNA binding" evidence=ISS;IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=TAS

TAIR|locus:2026890 PAN "AT1G68640" [Arabidopsis thaliana (taxid:3702)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 197/320 (61%), Positives = 229/320 (71%)

Query:    77 SNMAEASPITDTSTD-DTEDKNQRFERGQLTAVAAXXXXXXXXXXXXXQKTLRRLAQNRE 135
             S MA+ S  TDTSTD DT+DK Q    G    + A             Q+TLRRLAQNRE
Sbjct:   118 SAMADNSQHTDTSTDIDTDDKTQ-LNGGHQGMLLATNCSDQSNVKSSDQRTLRRLAQNRE 176

Query:   136 AARKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXX--XXGNGAAAF 193
             AARKSRLRKKAYVQQLE+SR++L             G  +             GNG  +F
Sbjct:   177 AARKSRLRKKAYVQQLENSRIRLAQLEEELKRARQQGSLVERGVSADHTHLAAGNGVFSF 236

Query:   194 DVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHI 253
             ++EY+RW EEH R I +LR+ VNS  GD +LR +VD V SH+DEIFRLKGI +K DVFH+
Sbjct:   237 ELEYTRWKEEHQRMINDLRSGVNSQLGDNDLRVLVDAVMSHYDEIFRLKGIGTKVDVFHM 296

Query:   254 LSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQG 313
             LSGMWKTPAER FMW+GGFRSSELLK+L N ++PLT+QQL+GI NLQQSSQQAEDALSQG
Sbjct:   297 LSGMWKTPAERFFMWLGGFRSSELLKILGNHVDPLTDQQLIGICNLQQSSQQAEDALSQG 356

Query:   314 MDALQQSLAETLANXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQ 373
             M+ALQQSL ETL++          NVA+YMG MAMAMGKLGTLE FLRQAD LRQQTLQQ
Sbjct:   357 MEALQQSLLETLSSASMGPNSSA-NVADYMGHMAMAMGKLGTLENFLRQADLLRQQTLQQ 415

Query:   374 MHRILTTRQSARALLAINDY 393
             +HRILTTRQ+ARA L I+DY
Sbjct:   416 LHRILTTRQAARAFLVIHDY 435

GO:0003677 "DNA binding" evidence=ISS;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2199968 TGA9 "AT1G08320" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 156/270 (57%), Positives = 198/270 (73%)

Query:   125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXX 184
             KTLRRLAQNREAARKSRLRKKAYVQQLESSR+KL+            G+F+         
Sbjct:   178 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQELQRARSQGLFMGGCGPPGPN 237

Query:   185 XXGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGI 244
                +GAA FD+EY RWLE+ NRH+ E+R  + +H  D +LR IVD   +HFDEIFRLK +
Sbjct:   238 IT-SGAAIFDMEYGRWLEDDNRHMSEIRTGLQAHLSDNDLRLIVDGYIAHFDEIFRLKAV 296

Query:   245 ASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQ 304
             A+KADVFH++ G W +PAERCF+W+ GFR S+L+K+LV+Q++ LTEQQL+GIY+LQ SSQ
Sbjct:   297 AAKADVFHLIIGTWMSPAERCFIWMAGFRPSDLIKILVSQMDLLTEQQLMGIYSLQHSSQ 356

Query:   305 QAEDALSQGMDALQQSLAETLANXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFLRQAD 364
             QAE+ALSQG++ LQQSL +TLA            V + M QMA+A+GK+  LEGF+RQAD
Sbjct:   357 QAEEALSQGLEQLQQSLIDTLA---------ASPVIDGMQQMAVALGKISNLEGFIRQAD 407

Query:   365 NLRQQTLQQMHRILTTRQSARALLAINDYF 394
             NLRQQT+ Q+ RILT RQ+AR  L I +Y+
Sbjct:   408 NLRQQTVHQLRRILTVRQAARCFLVIGEYY 437

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2030551 TGA3 "AT1G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 146/274 (53%), Positives = 186/274 (67%)

Query:   125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXX 184
             K  RRLAQNREAARKSRLRKKA+VQQLE SRLKL+            G+ +         
Sbjct:    98 KMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELVRARQQGLCVRNSSDTSYL 157

Query:   185 X-XGN---GAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
                GN   G AAF++EY+ WLEE NR + E+R A+ +H GD EL+ +VD+  +H+  +FR
Sbjct:   158 GPAGNMNSGIAAFEMEYTHWLEEQNRRVSEIRTALQAHIGDIELKMLVDSCLNHYANLFR 217

Query:   241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQ 300
             +K  A+KADVF ++SGMW+T  ER F WIGGFR SELL +++  +EPLT+QQL+ + NLQ
Sbjct:   218 MKADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSELLNVVMPYVEPLTDQQLLEVRNLQ 277

Query:   301 QSSQQAEDALSQGMDALQQSLAETLANXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFL 360
             QSSQQAE+ALSQG+D LQQ L E++A              N+   MA AM  L  LE F+
Sbjct:   278 QSSQQAEEALSQGLDKLQQGLVESIA-----IQIKVVESVNHGAPMASAMENLQALESFV 332

Query:   361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYF 394
              QAD+LRQQTLQQM +ILTTRQ+AR LLA+ +YF
Sbjct:   333 NQADHLRQQTLQQMSKILTTRQAARGLLALGEYF 366

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IPI

GO:0005516 "calmodulin binding" evidence=IDA;TAS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

GO:0003677 "DNA binding" evidence=IDA

TAIR|locus:2184078 TGA4 "AT5G10030" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 143/274 (52%), Positives = 184/274 (67%)

Query:   125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIX----XXXX 180
             K  RRLAQNREAARKSRLRKKAYVQQLE+SRLKL             G ++         
Sbjct:    80 KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIHLEQELDRARQQGFYVGNGVDTNAL 139

Query:   181 XXXXXXGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
                    +G  AF++EY  W+EE NR I ELR  ++    D ELR++V+N   H+ ++FR
Sbjct:   140 SFSDNMSSGIVAFEMEYGHWVEEQNRQICELRTVLHGQVSDIELRSLVENAMKHYFQLFR 199

Query:   241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQ 300
             +K  A+K DVF+++SGMWKT AER F+WIGGFR SELLK+L+   +PLT+QQL+ + NL+
Sbjct:   200 MKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPSELLKVLLPHFDPLTDQQLLDVCNLR 259

Query:   301 QSSQQAEDALSQGMDALQQSLAETLANXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFL 360
             QS QQAEDALSQGM+ LQ +LAE++A              +Y+ QM  AM +L  L  F+
Sbjct:   260 QSCQQAEDALSQGMEKLQHTLAESVA-------AGKLGEGSYIPQMTCAMERLEALVSFV 312

Query:   361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYF 394
              QAD+LR +TLQQMHRILTTRQ+AR LLA+ +YF
Sbjct:   313 NQADHLRHETLQQMHRILTTRQAARGLLALGEYF 346

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0003677 "DNA binding" evidence=TAS

TAIR|locus:2029366 TGA7 "AT1G77920" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 151/324 (46%), Positives = 198/324 (61%)

Query:    70 HRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAAXXXXXXXXXXXXXQKTLRR 129
             H  N   S++ +  P  D   ++ +  N      Q+ A                 K  RR
Sbjct:    39 HSPNTATSSIIQVDPRIDDHNNNIKI-NYDSSHNQIEAEQPSSNDNQDDDGRIHDKMKRR 97

Query:   130 LAQNREAARKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXXXXGNG 189
             LAQNREAARKSRLRKKAYVQQLE SRLKL+            G                G
Sbjct:    98 LAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQELEKVKQQG------HLGPSGSINTG 151

Query:   190 AAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKAD 249
              A+F++EYS WL+E +R + ELR A+ SH  D EL+ +V++  +H+  +F++K  A+KAD
Sbjct:   152 IASFEMEYSHWLQEQSRRVSELRTALQSHISDIELKMLVESCLNHYANLFQMKSDAAKAD 211

Query:   250 VFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDA 309
             VF+++SGMW+T  ER F WIGGFR SELL +++  L+PLT+QQ++ + NLQQSSQQAEDA
Sbjct:   212 VFYLISGMWRTSTERFFQWIGGFRPSELLNVVMPYLQPLTDQQILEVRNLQQSSQQAEDA 271

Query:   310 LSQGMDALQQSLAETLANXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQ 369
             LSQG+D LQQSLAE++               +Y   MA A+  L  LEGF+ QAD+LRQQ
Sbjct:   272 LSQGIDKLQQSLAESIV------IDAVIESTHYPTHMAAAIENLQALEGFVNQADHLRQQ 325

Query:   370 TLQQMHRILTTRQSARALLAINDY 393
             TLQQM +ILTTRQSAR LLA+ +Y
Sbjct:   326 TLQQMAKILTTRQSARGLLALGEY 349

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2171820 TGA1 "AT5G65210" [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 141/274 (51%), Positives = 183/274 (66%)

Query:   125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIF----IXXXXX 180
             K  RRLAQNREAARKSRLRKKAYVQQLE+SRLKL             G +    I     
Sbjct:    84 KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQLEQELDRARQQGFYVGNGIDTNSL 143

Query:   181 XXXXXXGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
                     G AAF++EY  W+EE NR I ELR  ++ H  D ELR++V+N   H+ E+FR
Sbjct:   144 GFSETMNPGIAAFEMEYGHWVEEQNRQICELRTVLHGHINDIELRSLVENAMKHYFELFR 203

Query:   241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQ 300
             +K  A+KADVF ++SGMW+T AER F+WIGGFR S+LLK+L+   + LT+QQL+ + NL+
Sbjct:   204 MKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPSDLLKVLLPHFDVLTDQQLLDVCNLK 263

Query:   301 QSSQQAEDALSQGMDALQQSLAETLANXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFL 360
             QS QQAEDAL+QGM+ LQ +LA+ +A              +Y+ Q+  AM +L  L  F+
Sbjct:   264 QSCQQAEDALTQGMEKLQHTLADCVA-------AGQLGEGSYIPQVNSAMDRLEALVSFV 316

Query:   361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYF 394
              QAD+LR +TLQQM+RILTTRQ+AR LLA+ +YF
Sbjct:   317 NQADHLRHETLQQMYRILTTRQAARGLLALGEYF 350

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=TAS

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41558	HBP1C_WHEAT	No assigned EC number	0.7095	0.9951	0.8571	N/A	no
O24160	TGA21_TOBAC	No assigned EC number	0.7432	0.9634	0.8662	N/A	no
P23923	HBP1B_WHEAT	No assigned EC number	0.8078	0.8073	0.9969	N/A	no
Q39140	TGA6_ARATH	No assigned EC number	0.7537	0.8024	0.9969	yes	no
P43273	TGA2_ARATH	No assigned EC number	0.7590	0.8048	1.0	no	no
Q39163	TGA5_ARATH	No assigned EC number	0.7147	0.8024	0.9969	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	410
pfam14144	79	pfam14144, DOG1, Seed dormancy control	2e-41
smart00338	65	smart00338, BRLZ, basic region leucin zipper	3e-09
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	1e-06
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	3e-05
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	9e-04

>gnl|CDD|206313 pfam14144, DOG1, Seed dormancy control

 Score =  140 bits (356), Expect = 2e-41
 Identities = 56/79 (70%), Positives = 67/79 (84%)

Query: 206 RHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERC 265
           R + ELRAA+N+HA D ELR++VD V +H+DE FRLK  A+KADVFH+LSGMWKTPAERC
Sbjct: 1   RLLAELRAALNAHASDDELRSLVDKVLAHYDEYFRLKSAAAKADVFHLLSGMWKTPAERC 60

Query: 266 FMWIGGFRSSELLKLLVNQ 284
           F+WIGGFR SELLKLL + 
Sbjct: 61  FLWIGGFRPSELLKLLYSL 79

This family of plant proteins appears to be a highly specific controller seed dormancy. Length = 79

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 167
           D+K  RR  +NREAAR+SR RKKA +++LE    +L    + L++
Sbjct: 3   DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKK 47

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 19/28 (67%), Positives = 24/28 (85%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLE 152
           K  RR  +NREAAR+SRLRKKAY+++LE
Sbjct: 5   KRERRRQKNREAARRSRLRKKAYIEELE 32

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           D+   RR  +N EAAR+SR +KK   ++LE    ++ +LE+E  + RQ+
Sbjct: 3   DEYRDRRR-RNNEAARRSREKKKQREEELEE---RVKELEEENAQLRQK 47

Length = 54

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 167
              R+ A+NREAAR+SR RK   ++QLE    +LT    +L+ 
Sbjct: 2   PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLED 44

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	410
PF14144	80	DOG1: Seed dormancy control	100.0
smart00338	65	BRLZ basic region leucin zipper.	98.57
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	98.47
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	98.35
KOG3584	348	consensus cAMP response element binding protein an	97.45
PF13801	125	Metal_resist: Heavy-metal resistance; PDB: 3EPV_C	96.71
COG3678	160	CpxP P pilus assembly/Cpx signaling pathway, perip	96.28
PRK12750	170	cpxP periplasmic repressor CpxP; Reviewed	95.97
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	95.81
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	93.78
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	93.36
KOG0837	279	consensus Transcriptional activator of the JUN fam	91.46
PRK12751	162	cpxP periplasmic stress adaptor protein CpxP; Revi	90.51
PRK10363	166	cpxP periplasmic repressor CpxP; Reviewed	90.38
PRK10455	161	periplasmic protein; Reviewed	90.21
PF07813	100	LTXXQ: LTXXQ motif family protein; InterPro: IPR01	86.86

>PF14144 DOG1: Seed dormancy control

Probab=100.00  E-value=2.4e-34  Score=234.71  Aligned_cols=79  Identities=63%  Similarity=1.088  Sum_probs=76.7

Q ss_pred             HhHHHHHHHhhcCC-CCchHHHHHHHHHHhHHHHHHHHhhhhccchhhhhcCCCcchHhhhhhhhcCCCchHHHHHHHhh
Q 015258          206 RHIVELRAAVNSHA-GDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQ  284 (410)
Q Consensus       206 r~l~ELR~AL~s~~-~D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~llSg~W~Tp~ER~FLWiGGfRPSellkLL~~q  284 (410)
                      |++.|||+|+++|. +|.+|+.||++||+||++||++|+.||++|||++|+|+|+||+|||||||||||||++||||+++
T Consensus         1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~   80 (80)
T PF14144_consen    1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ   80 (80)
T ss_pred             CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            57999999999998 89999999999999999999999999999999999999999999999999999999999999875

>smart00338 BRLZ basic region leucin zipper

Probab=98.57  E-value=1.4e-07  Score=73.60  Aligned_cols=42  Identities=55%  Similarity=0.679  Sum_probs=35.0

Q ss_pred             CCHHHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHHH
Q 015258          122 GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ  166 (410)
Q Consensus       122 ~~~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel~  166 (410)
                      .|+|-.||+.+||+||++||.|||+|++.||.   ++.+|+.+-.
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~---~~~~L~~en~   43 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELER---KVEQLEAENE   43 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            37899999999999999999999999999999   4444444433

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=98.47  E-value=2.7e-07  Score=71.84  Aligned_cols=42  Identities=50%  Similarity=0.732  Sum_probs=34.7

Q ss_pred             CHHHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHHHH
Q 015258          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR  167 (410)
Q Consensus       123 ~~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel~~  167 (410)
                      ..|-.+|+.+||+|||+||.|||+|+++||.   ++..|+.+...
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~---~~~~L~~en~~   44 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEE---KVEELESENEE   44 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHH
Confidence            3567899999999999999999999999999   66666666543

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=98.35  E-value=1e-06  Score=66.74  Aligned_cols=42  Identities=45%  Similarity=0.614  Sum_probs=35.7

Q ss_pred             CHHHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHHHHH
Q 015258          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRA  168 (410)
Q Consensus       123 ~~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel~~a  168 (410)
                      |++..||. .||+||++||-|||.|++.||.   ++.+|+.+.+.-
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~---~~~~L~~en~~L   44 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQ---EVQELEEENEQL   44 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            67889999 9999999999999999999999   666666655543

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=97.45  E-value=0.00013  Score=72.96  Aligned_cols=36  Identities=50%  Similarity=0.683  Sum_probs=31.6

Q ss_pred             HHHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHH
Q 015258          124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLE  162 (410)
Q Consensus       124 ~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qle  162 (410)
                      -|-.=||-.||||||.+|-.||-||..||+   |++=||
T Consensus       290 rKRevRLmKNREAARECRRKKKEYVKCLEN---RVAVLE  325 (348)
T KOG3584|consen  290 RKREVRLMKNREAARECRRKKKEYVKCLEN---RVAVLE  325 (348)
T ss_pred             hHHHHHHHhhHHHHHHHHHhHhHHHHHHHh---HHHHHh
Confidence            455668999999999999999999999999   776666

>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H

Probab=96.71  E-value=0.05  Score=44.72  Aligned_cols=85  Identities=25%  Similarity=0.252  Sum_probs=65.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Q 015258          286 EPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADN  365 (410)
Q Consensus       286 epLTeqQL~~I~~LqqstqqaEdALsqgma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~~Le~fv~qAD~  365 (410)
                      -+||++|...|..+.......-..+-+.+......+...+....+.           ...+.   ..++.+...-.+...
T Consensus        40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D-----------~~~i~---a~~~~~~~~~~~l~~  105 (125)
T PF13801_consen   40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPD-----------EAAIE---ALLEEIREAQAELRQ  105 (125)
T ss_dssp             S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS------------HHHHH---HHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----------HHHHH---HHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999998888643221           22233   333455566667778


Q ss_pred             HHHHHHHHHHHhcChHHHH
Q 015258          366 LRQQTLQQMHRILTTRQSA  384 (410)
Q Consensus       366 LR~qTL~qm~~ILTprQAA  384 (410)
                      .|.+++.++..+|||.|=+
T Consensus       106 ~~~~~~~~~~~~LtpeQR~  124 (125)
T PF13801_consen  106 ERLEHLLEIRAVLTPEQRA  124 (125)
T ss_dssp             HHHHHHHHHHHTT-GGGHH
T ss_pred             HHHHHHHHHHHcCCHHHhC
Confidence            9999999999999999865

>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]

Probab=96.28  E-value=0.047  Score=50.58  Aligned_cols=107  Identities=22%  Similarity=0.202  Sum_probs=69.9

Q ss_pred             hhhcCCCchHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHH
Q 015258          267 MWIGGFRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQM  346 (410)
Q Consensus       267 LWiGGfRPSellkLL~~qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm  346 (410)
                      +|.|+|-|=..= ...+.| +||++|..+|..+.+.-+   .++.+-+..-...+-+.+.++...+              
T Consensus        39 ~~~g~~~~~~~~-~~~~~l-~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~~~D~--------------   99 (160)
T COG3678          39 HHGGQFGPRHQG-GMFKGL-DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAADQFDE--------------   99 (160)
T ss_pred             ccCCCCCccccc-cccccc-cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcCH--------------
Confidence            577777665320 011223 799999999988877766   4444444444455555554322211              


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 015258          347 AMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAIND  392 (410)
Q Consensus       347 ~~Am~KL~~Le~fv~qAD~LR~qTL~qm~~ILTprQAArfLlAl~e  392 (410)
                      +.|=...+.++....+.+.+|.++-.+|..||||.|.+.+=--.++
T Consensus       100 aka~a~~~~m~~~~~~~~~~r~k~~~~m~~vLTPEQr~~l~~~~~~  145 (160)
T COG3678         100 AKARAQAEKMENQRQALRELRVKSDNQMYQVLTPEQRAKLQELLAQ  145 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            1222555678888899999999999999999999999776544433

>PRK12750 cpxP periplasmic repressor CpxP; Reviewed

Probab=95.97  E-value=0.3  Score=45.50  Aligned_cols=95  Identities=18%  Similarity=0.118  Sum_probs=58.6

Q ss_pred             hhcCCChHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHH-
Q 015258          283 NQLEPLTEQQLVGIYNLQQSSQQAEDA--------LSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKL-  353 (410)
Q Consensus       283 ~qLepLTeqQL~~I~~LqqstqqaEdA--------Lsqgma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL-  353 (410)
                      ..| +||++|...|..++...+.+=.+        ....|....+.+.+.+.++++.+               .|+..+ 
T Consensus        49 ~~L-~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~~FDe---------------aavral~  112 (170)
T PRK12750         49 RQL-DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLADDFDE---------------AAANDLA  112 (170)
T ss_pred             hhC-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCH---------------HHHHHHH
Confidence            456 79999999999988777664333        45556666666666665433221               111111 


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 015258          354 GTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDY  393 (410)
Q Consensus       354 ~~Le~fv~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey  393 (410)
                      +.+..--.+.---|.++.++++.||||-|=+.|---..+.
T Consensus       113 ~~~~~~~~e~~v~~~~~~~~~~~vLTpEQRak~~e~~~~r  152 (170)
T PRK12750        113 KQMVEKQVERRVKMLEKRHQMLSILTPEQKAKFQELQQER  152 (170)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            1111111122223677899999999999999988765554

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=95.81  E-value=0.0093  Score=49.85  Aligned_cols=33  Identities=33%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             HHHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhh
Q 015258          124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRL  156 (410)
Q Consensus       124 ~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~  156 (410)
                      =|-.||...||.||++||.||+.++..||....
T Consensus        29 lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~   61 (92)
T PF03131_consen   29 LKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIE   61 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            377899999999999999999999999998543

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=93.78  E-value=0.11  Score=56.27  Aligned_cols=42  Identities=43%  Similarity=0.593  Sum_probs=36.8

Q ss_pred             CCHHHH---HHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHHH
Q 015258          122 GDQKTL---RRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ  166 (410)
Q Consensus       122 ~~~k~~---rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel~  166 (410)
                      .|+|++   -|...|||-|--||.|||-|++-||.   +|..|++|=+
T Consensus       275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~---rLq~ll~Ene  319 (655)
T KOG4343|consen  275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEA---RLQALLSENE  319 (655)
T ss_pred             cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            478775   47899999999999999999999999   8888888766

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=93.36  E-value=0.08  Score=56.20  Aligned_cols=42  Identities=43%  Similarity=0.564  Sum_probs=32.2

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHHH
Q 015258          125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ  166 (410)
Q Consensus       125 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel~  166 (410)
                      |-.||...|-+-|--||-|||-||.+||+--..-+.=+|||+
T Consensus       251 KrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~  292 (472)
T KOG0709|consen  251 KRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQ  292 (472)
T ss_pred             HHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHH
Confidence            556999999999999999999999999993333333333443

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=91.46  E-value=0.38  Score=48.04  Aligned_cols=29  Identities=45%  Similarity=0.504  Sum_probs=24.3

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHHHhh
Q 015258          125 KTLRRLAQNREAARKSRLRKKAYVQQLES  153 (410)
Q Consensus       125 k~~rrLaqNREaARkSRlRKKaYvqqLE~  153 (410)
                      |..|.=+.|||||+|||.||---|.+||.
T Consensus       206 kleRkrlrnreaa~Kcr~rkLdrisrLEd  234 (279)
T KOG0837|consen  206 KLERKRLRNREAASKCRKRKLDRISRLED  234 (279)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            44566688999999999999888888876

>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed

Probab=90.51  E-value=6.7  Score=36.58  Aligned_cols=102  Identities=16%  Similarity=0.158  Sum_probs=62.2

Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 015258          284 QLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQA  363 (410)
Q Consensus       284 qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~~Le~fv~qA  363 (410)
                      .| +||++|...|-.+....+.......  .+ .-+.+-+.+.++++.+           ..+...+++..   ..-..-
T Consensus        54 ~l-~LTd~QR~qmr~im~~~r~~~~~~~--~~-~~~~m~~Li~Ad~FDe-----------aAvra~~~kma---~~~~e~  115 (162)
T PRK12751         54 GI-NLTEQQRQQMRDLMRQSHQSQPRLD--LE-DREAMHKLITADKFDE-----------AAVRAQAEKMS---QNQIER  115 (162)
T ss_pred             cC-CCCHHHHHHHHHHHHHhhhcccchh--HH-HHHHHHHHHhcCCCCH-----------HHHHHHHHHHH---HHHHHH
Confidence            44 7999999999888877776532111  11 1223334444333221           11222223222   222222


Q ss_pred             hHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhccc
Q 015258          364 DNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSL  403 (410)
Q Consensus       364 D~LR~qTL~qm~~ILTprQAArfLlAl~ey~~rLRaLssl  403 (410)
                      --.+.++.++|+.+|||-|-+.|=--.-+....+|.+..+
T Consensus       116 ~v~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~~~~~  155 (162)
T PRK12751        116 HVEMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQKPAA  155 (162)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            2357788899999999999999998888888888887643

>PRK10363 cpxP periplasmic repressor CpxP; Reviewed

Probab=90.38  E-value=5.3  Score=37.60  Aligned_cols=99  Identities=17%  Similarity=0.220  Sum_probs=59.2

Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHH--HHHHHH
Q 015258          284 QLEPLTEQQLVGIYNLQQSSQQAEDALS-QGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLG--TLEGFL  360 (410)
Q Consensus       284 qLepLTeqQL~~I~~LqqstqqaEdALs-qgma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~--~Le~fv  360 (410)
                      .| +||++|...|..|.+.-+.+...++ .++++++    +.+.++.+       +    ...+....+|+.  ..+.-|
T Consensus        48 gL-dLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh----~LI~ad~F-------D----Eaavra~a~kma~~~~e~~V  111 (166)
T PRK10363         48 GI-SLTEHQRQQMRDLMQQARHEQPPVNVSEMETMH----RLVTAENF-------D----ENAVRAQAEKMAQEQVARQV  111 (166)
T ss_pred             CC-CCCHHHHHHHHHHHHHHHhcccccCHHHHHHHH----HHHhcCCC-------C----HHHHHHHHHHHHHHHHHHHH
Confidence            44 7999999999999988876644443 2344443    22322221       1    111222223332  122222


Q ss_pred             HHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhccc
Q 015258          361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSL  403 (410)
Q Consensus       361 ~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~rLRaLssl  403 (410)
                           -|.++-++|..||||-|-+.|=--.-+....+|.++.+
T Consensus       112 -----em~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~~~~~  149 (166)
T PRK10363        112 -----EMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQW  149 (166)
T ss_pred             -----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 36678889999999999999966555566666766543

>PRK10455 periplasmic protein; Reviewed

Probab=90.21  E-value=3.4  Score=38.32  Aligned_cols=102  Identities=14%  Similarity=0.150  Sum_probs=57.1

Q ss_pred             hhhhhhcC---CCchHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCCCCcc
Q 015258          264 RCFMWIGG---FRSSELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALS-QGMDALQQSLAETLANGSPSPSGTSGNV  339 (410)
Q Consensus       264 R~FLWiGG---fRPSellkLL~~qLepLTeqQL~~I~~LqqstqqaEdALs-qgma~LQqsLAd~la~~~~~~~G~~~~v  339 (410)
                      .+.+|-||   ..+..+|    ..| +||++|...|..+.+..+..-...+ +..+.++    +.+.++...        
T Consensus        35 ~~~~~~~~~~g~~~~~m~----~~L-~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~----~li~ad~FD--------   97 (161)
T PRK10455         35 KPMMHHKGKFGPHHDMMF----KGL-NLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMH----DIIASDTFD--------   97 (161)
T ss_pred             CccccCCCCCCchhhhhh----hhC-CCCHHHHHHHHHHHHHHHHhhccccHHHHHHHH----HHHccCccC--------
Confidence            34577653   4344444    445 7999999999988777665533222 2333333    223221111        


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHH
Q 015258          340 ANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALL  388 (410)
Q Consensus       340 ~~~~~qm~~Am~KL~~Le~fv~qAD~LR~qTL~qm~~ILTprQAArfLl  388 (410)
                         ...+...++++.   ..-.+.--.|.++-.+|..||||-|=+.|=-
T Consensus        98 ---eaavra~~~k~~---~~~~~~~~~~~~~~~qiy~vLTPEQr~q~~~  140 (161)
T PRK10455         98 ---KAKAEAQITKME---AQRKARMLAHMETQNKIYNVLTPEQKKQFNA  140 (161)
T ss_pred             ---HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence               111222223332   2223333368889999999999999998753

>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT)

Probab=86.86  E-value=3.7  Score=33.13  Aligned_cols=86  Identities=15%  Similarity=0.140  Sum_probs=44.4

Q ss_pred             hhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 015258          283 NQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQ  362 (410)
Q Consensus       283 ~qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~~Le~fv~q  362 (410)
                      ..| +||++|...|..+....+..-..+....+.+...-.   .  .       .+. +...    ++.+...+...-.+
T Consensus        11 ~~L-~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~--~-------~~~-~~~~----~~~~~~~~~~~~~~   72 (100)
T PF07813_consen   11 EEL-NLTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRD---P--S-------FDE-AAPE----ALAAMAEMMELRAE   72 (100)
T ss_dssp             TTS---THHHHHHHHHHHHHHCTTS------HHHHHHHHH---S--S---------H-HHHH----HHH--HHCHHHHHH
T ss_pred             hhC-CCCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhcc---c--c-------CCh-hHHH----HHHHHHHHHHHHHH
Confidence            344 599999999999998887776666211222211111   0  0       000 0011    11222334444445


Q ss_pred             HhHHHHHHHHHHHHhcChHHHHHH
Q 015258          363 ADNLRQQTLQQMHRILTTRQSARA  386 (410)
Q Consensus       363 AD~LR~qTL~qm~~ILTprQAArf  386 (410)
                      .-..|..+...+..||||-|=+.|
T Consensus        73 ~~~~~~~~~~~~~~vLt~eQk~~~   96 (100)
T PF07813_consen   73 MMEERAKAQHALYAVLTPEQKEKF   96 (100)
T ss_dssp             HHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHH
Confidence            555678889999999999998776

This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	410
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	1e-07
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	2e-07
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	9e-06
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	1e-05
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	1e-05
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	1e-04
2wt7_B	90	Transcription factor MAFB; transcription, transcri	1e-04
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	8e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           K   RL +NREAAR+SR +KK YV+ LE+   ++  LE + +   ++
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE 44

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           K  + L +NR AA +SR ++K +VQ LE     L+ L  +LQ     
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTL 47

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ----LEQELQRARQQ 171
           K  R+  +NR AA KSR RK   + +LE     L      L       R+Q
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 51

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 8e-07
 Identities = 54/445 (12%), Positives = 105/445 (23%), Gaps = 191/445 (42%)

Query: 85  ITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLR---------------- 128
           + +    D +D      +  L+     +       K     TLR                
Sbjct: 30  VDNFDCKDVQD----MPKSILSK---EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 129 ---RLAQN--------REAARKSRLRKKAYVQQLES-------------SRLKL-TQLEQ 163
               L  N        +   R+  +  + Y++Q +              SRL+   +L Q
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 164 ELQRAR-QQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDT 222
            L   R  + + I         + G+G          W+                 A D 
Sbjct: 143 ALLELRPAKNVLI-------DGVLGSGKT--------WV-----------------ALDV 170

Query: 223 ELRTIVDNVTSHFD-EIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSEL---- 277
              +    V    D +IF                  W          +    S E     
Sbjct: 171 -CLS--YKVQCKMDFKIF------------------WLN--------LKNCNSPETVLEM 201

Query: 278 LKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALS------QGMDAL-------------- 317
           L+ L+ Q++P    +     N++      +  L          + L              
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 318 ------------QQSLAETLANGSP------------SPSGTSGNVANYMGQ-------- 345
                        + + + L+  +             +P      +  Y+          
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 346 ------MAMAM-GKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARAL--LAINDYFSR 396
                   +++  +   +   L   DN +     ++  I+    S   L        F R
Sbjct: 322 VLTTNPRRLSIIAES--IRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDR 377

Query: 397 L-----------RALSSLWLARPRE 410
           L             LS +W    + 
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKS 402

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 167
           K L+++ QN+ AA + R +K+A  + L     +L +  + L+ 
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKE 44

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           +K   R  +N+ AA K R R++     L++   +L   +  LQ     
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIAN 48

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 119 EKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
            +S D   L+R A+N EAAR+SR RK   ++QLE    K+ +L  +      +
Sbjct: 4   PESSDPAALKR-ARNTEAARRSRARKLQRMKQLED---KVEELLSKNYHLENE 52

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 117 SKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           SKE+    K  RR  +NR  A   R+++    ++LE  + +L Q  ++L      
Sbjct: 29  SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENAS 83

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 117 SKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           +K++    K  RR  +NR  A+  R ++      LE+ + +L Q  ++L++   +
Sbjct: 19  TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR 73

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 36.9 bits (85), Expect = 8e-04
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
            + + +R AQNR A R  R RK+ +++ LE+   ++  L++       +
Sbjct: 6   QEPSSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSSTTLE 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	410
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	98.87
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	98.41
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	98.19
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	98.02
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	97.95
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	97.92
2y39_A	118	Nickel and cobalt resistance protein CNRR; metal b	97.23
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	96.54
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	95.2
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	94.51
3itf_A	145	Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxr	93.96
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	93.46
3oeo_A	138	Spheroplast protein Y; LTXXQ, extracytoplasmic str	85.92
3lay_A	175	Zinc resistance-associated protein; salmonella typ	82.47
3o39_A	108	Periplasmic protein related to spheroblast format;	81.86
2wt7_B	90	Transcription factor MAFB; transcription, transcri	81.23

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=98.87  E-value=2.3e-09  Score=81.20  Aligned_cols=42  Identities=43%  Similarity=0.576  Sum_probs=37.6

Q ss_pred             HHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHHHHHhh
Q 015258          126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQ  170 (410)
Q Consensus       126 ~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel~~ar~  170 (410)
                      -.+|+..|||+|+.||.|||+||+.||.   ++.+|+.|-..-+.
T Consensus         2 r~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~   43 (55)
T 1dh3_A            2 REVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIE   43 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            4799999999999999999999999999   78888888776554

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=98.41  E-value=2.8e-07  Score=71.57  Aligned_cols=39  Identities=38%  Similarity=0.466  Sum_probs=29.3

Q ss_pred             CHHHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHH
Q 015258          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE  164 (410)
Q Consensus       123 ~~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqe  164 (410)
                      +|+..+|-++||||||+||.||++|+..||.   ++.+|+.|
T Consensus         7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~---~v~~L~~e   45 (63)
T 2dgc_A            7 SDPAALKRARNTEAARRSRARKLQRMKQLED---KVEELLSK   45 (63)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            5666777788999999999999999999999   55444443

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=98.19  E-value=2e-06  Score=66.11  Aligned_cols=37  Identities=41%  Similarity=0.482  Sum_probs=30.9

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHH
Q 015258          125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE  164 (410)
Q Consensus       125 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqe  164 (410)
                      |..||...||+||+|||.|||.|++.||.   ++..|+.+
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~---~v~~L~~~   37 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEE---KVKTLKAQ   37 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            45789999999999999999999999999   44444443

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=98.02  E-value=9.8e-06  Score=62.51  Aligned_cols=37  Identities=35%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHH
Q 015258          125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE  164 (410)
Q Consensus       125 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqe  164 (410)
                      |-.+|+-.||+||+|||.|||.|++.||.   +..+|+.+
T Consensus         2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~---~v~~L~~~   38 (63)
T 2wt7_A            2 KRRIRRERNKMAAAKCRNRRRELTDTLQA---ETDQLEDE   38 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            45789999999999999999999999999   44444443

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=97.95  E-value=1.2e-05  Score=61.51  Aligned_cols=30  Identities=40%  Similarity=0.556  Sum_probs=27.3

Q ss_pred             HHHHHHhhHHHHHHhhhhHHHHHHHHhhhh
Q 015258          126 TLRRLAQNREAARKSRLRKKAYVQQLESSR  155 (410)
Q Consensus       126 ~~rrLaqNREaARkSRlRKKaYvqqLE~sr  155 (410)
                      =.+|+..||+||.|||.|||.|++.||.--
T Consensus         2 R~~r~erNr~AA~k~R~rKk~~~~~Le~~~   31 (61)
T 1t2k_D            2 RRKFLERNRAAASRSRQKRKVWVQSLEKKA   31 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999943

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=97.92  E-value=9.3e-06  Score=64.43  Aligned_cols=39  Identities=33%  Similarity=0.419  Sum_probs=34.0

Q ss_pred             HHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHHHH
Q 015258          126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR  167 (410)
Q Consensus       126 ~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel~~  167 (410)
                      ..+|-||||+|+|-.|-||++||..||.   ++.+||.+.+.
T Consensus         9 ~~kR~~qNR~AQRafReRK~~~i~~LE~---~v~~le~~~~~   47 (70)
T 1gd2_E            9 SSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSS   47 (70)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            4688999999999999999999999999   88888765543

>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*

Probab=97.23  E-value=0.0064  Score=52.62  Aligned_cols=101  Identities=17%  Similarity=0.195  Sum_probs=77.4

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHH
Q 015258          275 SELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLG  354 (410)
Q Consensus       275 SellkLL~~qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~  354 (410)
                      +.+=.+|...| +||++|...|..+...-.....+|.++|...-.-|++.+....           .|..++..|+.   
T Consensus         9 ~~lH~~vh~~L-~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~~-----------~~~p~V~aaid---   73 (118)
T 2y39_A            9 GDLHEILHEAV-PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNP-----------AWSPEVEAATQ---   73 (118)
T ss_dssp             CCHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------SCCHHHHHHHH---
T ss_pred             CchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------ccCHHHHHHHH---
Confidence            33444566777 7999999999999999999999999999999999999986321           13445555554   


Q ss_pred             HHHHHHHHHhHHHHHH---HHHHHHhcChHHHHHHHHHHHHH
Q 015258          355 TLEGFLRQADNLRQQT---LQQMHRILTTRQSARALLAINDY  393 (410)
Q Consensus       355 ~Le~fv~qAD~LR~qT---L~qm~~ILTprQAArfLlAl~ey  393 (410)
                         .|-...-.|+..|   +-.|..||||-|+.+|=-.+.+-
T Consensus        74 ---~~h~~mG~LQkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a  112 (118)
T 2y39_A           74 ---EVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDA  112 (118)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence               3333555688888   66689999999999997666544

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=96.54  E-value=0.0023  Score=49.33  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=24.4

Q ss_pred             HHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHH
Q 015258          126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKL  158 (410)
Q Consensus       126 ~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL  158 (410)
                      -.|+.-+||.||+++|.|||.+++.||.---.|
T Consensus         3 ~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L   35 (63)
T 1ci6_A            3 KLKKMEQNKTAATRYRQKKRAEQEALTGECKEL   35 (63)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788999999999999999999999843333

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=95.20  E-value=0.0072  Score=51.47  Aligned_cols=38  Identities=32%  Similarity=0.448  Sum_probs=31.5

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHH
Q 015258          125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL  165 (410)
Q Consensus       125 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel  165 (410)
                      |-.||--.||++|+.||.||.+.+..||.   .+.+|.+|+
T Consensus        37 K~~RR~lKNR~yAq~CR~rk~~~~~~LE~---e~~~L~~e~   74 (107)
T 3a5t_A           37 KQRRRTLKNRGYAASCRVKRVTQKEELEK---QKAELQQEV   74 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTSSTT
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            77899999999999999999999999997   444444443

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=94.51  E-value=0.098  Score=42.10  Aligned_cols=48  Identities=31%  Similarity=0.306  Sum_probs=37.3

Q ss_pred             CHHHHHHHHhhHHHHHHhhhhHHHHHHHHhh---------hh--hHHhhHHHHHHHHhh
Q 015258          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLES---------SR--LKLTQLEQELQRARQ  170 (410)
Q Consensus       123 ~~k~~rrLaqNREaARkSRlRKKaYvqqLE~---------sr--~kL~qleqel~~ar~  170 (410)
                      |++-..|-..|.+||||||-.+|.-.+.++.         .+  .++.+|+.|+..-|.
T Consensus        13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~   71 (78)
T 1gu4_A           13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN   71 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777888899999999999999998888844         33  345666667666665

>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A

Probab=93.96  E-value=0.31  Score=43.18  Aligned_cols=99  Identities=16%  Similarity=0.187  Sum_probs=61.3

Q ss_pred             hhcCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHH-HHHHHHHHHH
Q 015258          283 NQLEPLTEQQLVGIYNLQQSSQQAEDALSQ-GMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAM-GKLGTLEGFL  360 (410)
Q Consensus       283 ~qLepLTeqQL~~I~~LqqstqqaEdALsq-gma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am-~KL~~Le~fv  360 (410)
                      ..| +||++|...|..|.+..+.+...+.. .++    .+-+.+.++..       +        +.|+ ..++.+...-
T Consensus        42 ~~L-~LTdeQkqqir~L~~~~r~~~~~~~~~~r~----~l~~Li~ad~f-------D--------eaa~ral~~~~~~~~  101 (145)
T 3itf_A           42 DGI-SLTEHQRQQMRDLMQQARHEQPPVNVSELE----TMHRLVTAENF-------D--------ENAVRAQAEKMANEQ  101 (145)
T ss_dssp             TTC-CCCHHHHHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHTCSSC-------C--------HHHHHHHHHHHHHHH
T ss_pred             ccC-CCCHHHHHHHHHHHHHHHHHhhhccHHHHH----HHHHHHccCCC-------C--------HHHHHHHHHHHHHHH
Confidence            345 69999999999999888876554432 222    23333332111       1        1122 2223333444


Q ss_pred             HHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc
Q 015258          361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALS  401 (410)
Q Consensus       361 ~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~rLRaLs  401 (410)
                      .+.--.|.++-.+|..||||-|-+.|---..+-...++.++
T Consensus       102 ~e~~v~r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~~~~~  142 (145)
T 3itf_A          102 IARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVT  142 (145)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            44445788889999999999999998876666665555544

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=93.46  E-value=0.2  Score=41.11  Aligned_cols=48  Identities=29%  Similarity=0.284  Sum_probs=36.0

Q ss_pred             CHHHHHHHHhhHHHHHHhhhhHHHHHHHHhh---------h--hhHHhhHHHHHHHHhh
Q 015258          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLES---------S--RLKLTQLEQELQRARQ  170 (410)
Q Consensus       123 ~~k~~rrLaqNREaARkSRlRKKaYvqqLE~---------s--r~kL~qleqel~~ar~  170 (410)
                      |++-..|--.|.+||||||-.+|.=.++++.         .  +.++.+|+.|++.-|.
T Consensus        13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~   71 (87)
T 1hjb_A           13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN   71 (87)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888899999999999999987776643         2  2345666666666665

>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}

Probab=85.92  E-value=0.39  Score=41.87  Aligned_cols=100  Identities=11%  Similarity=0.120  Sum_probs=54.6

Q ss_pred             HHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 015258          281 LVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFL  360 (410)
Q Consensus       281 L~~qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~~Le~fv  360 (410)
                      +...| +||++|...|..|.+..+..-..   .+....+.+.+.+.++..       +    ...+.   ..++.+...-
T Consensus        28 m~~~L-~LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~a~~f-------D----eaav~---al~~~~~~~~   89 (138)
T 3oeo_A           28 MFKDL-NLTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIITSDTF-------D----KVKAE---AQIAKMEEQR   89 (138)
T ss_dssp             --CCS-CCCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHTCSSC-------C----HHHHH---HHHGGGSHHH
T ss_pred             HHhcC-CCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCC-------C----HHHHH---HHHHHHHHHH
Confidence            44666 69999999999998877654221   111222334443332111       1    11111   2223333344


Q ss_pred             HHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Q 015258          361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLR  398 (410)
Q Consensus       361 ~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~rLR  398 (410)
                      .+.--.|.++..+|..||||-|-+.|---+.+-..+++
T Consensus        90 ~e~~~~~~~~~~~~~~vLTPEQr~q~~~~~~kr~~~~~  127 (138)
T 3oeo_A           90 KANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERP  127 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhh
Confidence            44455788899999999999999998776655544443

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=82.47  E-value=15  Score=33.33  Aligned_cols=54  Identities=17%  Similarity=0.134  Sum_probs=36.1

Q ss_pred             cCCCchHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015258          270 GGFRSSELLKLLVNQ-LEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLA  326 (410)
Q Consensus       270 GGfRPSellkLL~~q-LepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqsLAd~la  326 (410)
                      |||.+-.   =+..+ .-+||++|..+|..|+++-+.+-.+|.+.|...++.+-+.+.
T Consensus        52 g~~~~g~---gm~~q~~LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~  106 (175)
T 3lay_A           52 HHWGNND---GMWQQGGSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLT  106 (175)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCC---CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6665542   12233 237999999999999999999999999999999988877765

>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}

Probab=81.86  E-value=1.9  Score=36.36  Aligned_cols=83  Identities=14%  Similarity=0.113  Sum_probs=45.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Q 015258          287 PLTEQQLVGIYNLQQSSQQAEDALS-QGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADN  365 (410)
Q Consensus       287 pLTeqQL~~I~~LqqstqqaEdALs-qgma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~~Le~fv~qAD~  365 (410)
                      +||++|...|..|....+.+-.... ...+    .+-+.+.++...+        .......   +++   ...-.+.--
T Consensus        17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~----~m~~Li~ad~FDE--------aaar~l~---~~~---~~~~~e~~v   78 (108)
T 3o39_A           17 NLTDAQKQQIREIMKGQRDQMKRPPLEERR----AMHDIIASDTFDK--------AKAEAQI---AKM---EEQRKANML   78 (108)
T ss_dssp             CCCHHHHHHHHHHHHTTTTSCCCCCHHHHH----HHHHHHSSSSCCH--------HHHHHHH---HHT---HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcccccHHHHH----HHHHHhccCCCCH--------HHHHHHH---HHH---HHHHHHHHH
Confidence            6999999999999887766533222 1122    2333333222210        0111111   211   112222223


Q ss_pred             HHHHHHHHHHHhcChHHHHHHH
Q 015258          366 LRQQTLQQMHRILTTRQSARAL  387 (410)
Q Consensus       366 LR~qTL~qm~~ILTprQAArfL  387 (410)
                      .|.++=++|..||||-|-+.|-
T Consensus        79 ~~~r~~~qmy~lLTPEQk~q~~  100 (108)
T 3o39_A           79 AHMETQNKIYNILTPEQKKQFN  100 (108)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHH
Confidence            5677788999999999998864

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=81.23  E-value=3.5  Score=34.00  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=29.0

Q ss_pred             CHHHHHHHHhhHHHHHHhhhhHHHHHHHHhhhh
Q 015258          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSR  155 (410)
Q Consensus       123 ~~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr  155 (410)
                      .=|-.||=-.||-+|..||-||-.-+..||.-.
T Consensus        25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~   57 (90)
T 2wt7_B           25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEK   57 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            356779999999999999999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00