Citrus Sinensis ID: 015259
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 410 | 2.2.26 [Sep-21-2011] | |||||||
| Q86HG0 | 412 | Mannose-1-phosphate guany | yes | no | 0.926 | 0.922 | 0.421 | 3e-97 | |
| Q7SXP8 | 422 | Mannose-1-phosphate guany | yes | no | 0.953 | 0.926 | 0.443 | 8e-97 | |
| Q6GMK8 | 422 | Mannose-1-phosphate guany | no | no | 0.953 | 0.926 | 0.432 | 9e-94 | |
| Q0VFM6 | 421 | Mannose-1-phosphate guany | yes | no | 0.941 | 0.916 | 0.421 | 1e-93 | |
| Q66KG5 | 426 | Mannose-1-phosphate guany | N/A | no | 0.953 | 0.917 | 0.428 | 5e-92 | |
| Q6DKE9 | 421 | Mannose-1-phosphate guany | N/A | no | 0.946 | 0.921 | 0.432 | 2e-91 | |
| Q5XIC1 | 420 | Mannose-1-phosphate guany | yes | no | 0.953 | 0.930 | 0.417 | 4e-89 | |
| Q922H4 | 420 | Mannose-1-phosphate guany | yes | no | 0.953 | 0.930 | 0.415 | 8e-89 | |
| B0CM52 | 420 | Mannose-1-phosphate guany | N/A | no | 0.953 | 0.930 | 0.413 | 7e-88 | |
| Q96IJ6 | 420 | Mannose-1-phosphate guany | yes | no | 0.953 | 0.930 | 0.413 | 7e-88 |
| >sp|Q86HG0|GMPPA_DICDI Mannose-1-phosphate guanyltransferase alpha OS=Dictyostelium discoideum GN=gmppA PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 355 bits (911), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 179/425 (42%), Positives = 264/425 (62%), Gaps = 45/425 (10%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
A+I+VGGP+KGTRFRPLSL++PK LFP+ G+PM++H I AC K I L+GF++E
Sbjct: 8 AIILVGGPSKGTRFRPLSLDVPKLLFPIAGKPMIYHHIEACSKVENMKEIILIGFFQESV 67
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
+ ++S S +L + +RY+ E+K G+AG LY+FRD+I+E PS IF+L+ D+CC+FPL
Sbjct: 68 LSKFISETSKQLNVAIRYINEEKVLGTAGGLYHFRDIILEGGPSEIFVLHSDICCAFPLN 127
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
++L H+ +G TI+ ++ + A+Q+G LV D T ELLHY EKPETFVS+LINCGVY
Sbjct: 128 DLLQFHKQHGRSCTIMGTEIESAYANQYGCLVRDEKTAELLHYAEKPETFVSNLINCGVY 187
Query: 185 VFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF------------VRLDQ 232
F+P F+ I + L+++ +N+TTD+ +RL+Q
Sbjct: 188 CFSPQFFDVIG---------------KTMIDLKTSGQNITTDYPEITRKGFDVERLRLEQ 232
Query: 233 DILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATI 292
DI PLAG + Y + FW QIK G S+ C LYL F T P +L G+ I
Sbjct: 233 DIFVPLAGTGFISVYPYVGFWRQIKNAGSSVYCQELYLNHFAKTKPEVLKKGN-----NI 287
Query: 293 IGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGW 352
IG+V + +A + P+A IGP+V I N +IG GVR+I IILD EI ++A + +I+GW
Sbjct: 288 IGNVIIDSTASVDPSAIIGPDVYIGPNVKIGKGVRVIHSIILDQTEIKDHACIIYSIIGW 347
Query: 353 KSSIGRWSRVQAEGDF-------NAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 405
+S IG W+R++ ++ + + G+TI G E++V+N IV+P+K L+ + +
Sbjct: 348 QSLIGVWARIEGIPNYTPFLYSQDKRRGVTIFGAGAQANGEIIVSNCIVMPHKQLDRNYN 407
Query: 406 QEIIL 410
EIIL
Sbjct: 408 NEIIL 412
|
Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 3 |
| >sp|Q7SXP8|GMPAB_DANRE Mannose-1-phosphate guanyltransferase alpha-B OS=Danio rerio GN=gmppab PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 258/428 (60%), Gaps = 37/428 (8%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEER- 63
A+I++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC K I L+GFY+
Sbjct: 4 AIILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACAQVPDMKEIMLIGFYQPND 63
Query: 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
E ++ S E +IP+RYL+E G+ G +Y+FRD I+ P+ FL+N DVC FPL
Sbjct: 64 ELNRFIYSAQQEFKIPIRYLQEFAALGTGGGIYHFRDQILSGGPAAFFLMNADVCSEFPL 123
Query: 124 PEMLDAHRNYG--GMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINC 181
EML HR +G G +L + + +G +V + +TNE+LH+ EKP TFVSD+INC
Sbjct: 124 LEMLQFHRQHGENHCGVLLGTTANRTQSLNYGCIVENHETNEVLHFVEKPSTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+FTPDIF I G QR +E ++ E L + + VRL+QDI + LAG+
Sbjct: 184 GIYLFTPDIFAHI-GKVFQRNQQEKIQ-----EELTHGRQ--MPEVVRLEQDIFTALAGQ 235
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPS 301
K+L+ Y+T FW QIK+ G ++ S LYL Q+ T P LA+ G I GDVY+HP+
Sbjct: 236 KKLFVYKTQHFWSQIKSAGSAIYASRLYLKQYHQTHPERLATNQG-GTPKITGDVYIHPT 294
Query: 302 AKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSR 361
A I P+A +GPNVSI IG GVR+ IIL G + ++ V N+IVGW S++G+W+R
Sbjct: 295 ANIDPSAVLGPNVSIGKGVTIGGGVRVRESIILHGAVLQDHCCVLNSIVGWDSTVGKWAR 354
Query: 362 VQAE------GDFNAKL-------------GITILGEAVGVEDEVVVTNSIVLPNKTLNV 402
V+ D AK+ ITILG V + EV++ NSIVLP+K LN
Sbjct: 355 VEGTPSDPNPNDPYAKIDSETLFRDGGLTPSITILGCNVNIPSEVIIRNSIVLPHKDLNR 414
Query: 403 SVHQEIIL 410
S +IIL
Sbjct: 415 SFKNQIIL 422
|
Danio rerio (taxid: 7955) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q6GMK8|GMPAA_DANRE Mannose-1-phosphate guanyltransferase alpha-A OS=Danio rerio GN=gmppaa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (881), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 260/428 (60%), Gaps = 37/428 (8%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYE-ER 63
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC K I L+GFY+
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACSKLPNMKEILLIGFYQPNE 63
Query: 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
E ++S + +I +RYL+E G+ G +Y+FRD I+ P F++N DVC FPL
Sbjct: 64 ELNRFLSCAQQDFKISIRYLQEYAALGTGGGIYHFRDQILSGGPDAFFVMNADVCSEFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSA--ESASQFGELVADPDTNELLHYTEKPETFVSDLINC 181
PEMLD + +G + +++ +A + + +G +V + T+E+LHY EKP TFVSD+INC
Sbjct: 124 PEMLDFQKEHGDTYSFVILGTTANRKQSLNYGCIVENEQTDEVLHYVEKPGTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+FTP+IF I G Q+ +E L S ++ + +RL+QDI + LAG+
Sbjct: 184 GIYLFTPEIFQHI-GSVFQKNQQEMLLEEQSNGWHRA-------EVIRLEQDIFTALAGQ 235
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPS 301
+LY Y+T FW QIK+ G ++ S LYL Q+ T P LA+ + A G+VY+HP+
Sbjct: 236 GKLYVYKTDRFWSQIKSAGSAIYASRLYLNQYHKTHPERLAT-NTEGGAKTRGNVYIHPT 294
Query: 302 AKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSR 361
A I PTA +GPNVSI IGAGVR+ IIL G + +++ V N+IVGW+S+IG+W+R
Sbjct: 295 ANIDPTAVLGPNVSIGTGVTIGAGVRVRESIILHGATLQDHSCVLNSIVGWESTIGKWAR 354
Query: 362 VQAE------GDFNAKL-------------GITILGEAVGVEDEVVVTNSIVLPNKTLNV 402
V+ D AK+ ITILG V + EV++ NSIVLP+K LN
Sbjct: 355 VEGTPSDPNPNDPYAKIDSETLFRDGKLTPSITILGCNVNIPSEVIILNSIVLPHKDLNR 414
Query: 403 SVHQEIIL 410
S +IIL
Sbjct: 415 SFKNQIIL 422
|
Danio rerio (taxid: 7955) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q0VFM6|GMPPA_XENTR Mannose-1-phosphate guanyltransferase alpha OS=Xenopus tropicalis GN=gmppa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (881), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 182/432 (42%), Positives = 258/432 (59%), Gaps = 46/432 (10%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PMV H I AC K I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
+ ++ E ++ +RYL+E G+ G +Y+FRD I+ P F++N DVC +FPL
Sbjct: 64 ALSSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNADVCSAFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESAS--QFGELVADPDTNELLHYTEKPETFVSDLINC 181
MLD H+ +GG + +++ +A + +G +VA+ +T E+LHY EKP TFVSD+INC
Sbjct: 124 VPMLDFHKQHGGSQSYVILGTTANRSQSLNYGCIVANGETQEVLHYVEKPGTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+F+P IF I V + + L SS++ T+ +RL+QD+ + LAG+
Sbjct: 184 GIYLFSPSIFQHIAEVFQRNQQELQLEENSSWQ---------RTEVIRLEQDVFTTLAGR 234
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNA--TIIGDVYVH 299
+LY Y+T W QIK+ G ++ S LYL+Q+ T P LAS TK TI G+VY+H
Sbjct: 235 GKLYVYKTEGCWSQIKSAGSAIYASRLYLSQYGSTHPERLAS---TKEGGPTIRGNVYIH 291
Query: 300 PSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRW 359
P+A + P+A +GPNVSI +GAGVR+ I+L G + +++ V N IVGW S++GRW
Sbjct: 292 PTANVDPSAVLGPNVSIGMGVTVGAGVRIRESIVLHGAVLQDHSCVLNTIVGWDSTVGRW 351
Query: 360 SRVQA---------------------EGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 398
+RV+ EG ITILG V + EVV+ NSIVLP+K
Sbjct: 352 ARVEGTPSDPNPNDPYSKIDSETLFREGKLTPS--ITILGCNVSIPAEVVILNSIVLPHK 409
Query: 399 TLNVSVHQEIIL 410
L+ S +IIL
Sbjct: 410 ELSRSFKNQIIL 421
|
Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q66KG5|GMPAB_XENLA Mannose-1-phosphate guanyltransferase alpha-B OS=Xenopus laevis GN=gmppa-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (867), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 185/432 (42%), Positives = 256/432 (59%), Gaps = 41/432 (9%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PMV H I AC K I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
+ ++ E ++ +RYL+E G+ G +Y+FRD I+ P F++N DVC FPL
Sbjct: 64 ALSSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNADVCSEFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESAS--QFGELVADPDTNELLHYTEKPETFVSDLINC 181
MLD H+ +GG + +++ +A +G +V++ DT E+LHY EKP TFVSD+INC
Sbjct: 124 VPMLDFHKQHGGSQSYVILGTTANRTQSLNYGCIVSNGDTQEVLHYVEKPGTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+F+P IF I V QR E L+ S S+ + T+ +RL+QD+ + LAG
Sbjct: 184 GIYLFSPSIFQHIAEVF-QRNQLE-LQLFSCISEENSSWQR--TEVIRLEQDVFTTLAGH 239
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNA--TIIGDVYVH 299
+LY Y+T W QIK+ G ++ S LYL+Q+ T P LAS TK TI G+VY+H
Sbjct: 240 GKLYVYKTEGCWSQIKSAGSAIYASRLYLSQYSTTHPERLAS---TKEGGPTIRGNVYIH 296
Query: 300 PSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRW 359
P+A + P+A +GPNVS+ +GAGVR+ IIL G + +++ V N IVGW S +GRW
Sbjct: 297 PTANVDPSAVLGPNVSVGMGVTVGAGVRIRESIILHGAVLQDHSCVLNTIVGWDSMVGRW 356
Query: 360 SRVQA---------------------EGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 398
+RV+ EG ITILG V + EVV+ NSIVLP+K
Sbjct: 357 ARVEGTPSDPNPNDPYSKIDSETLFREGKLTPS--ITILGCNVSIPAEVVILNSIVLPHK 414
Query: 399 TLNVSVHQEIIL 410
L+ S +IIL
Sbjct: 415 ELSRSFKNQIIL 426
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q6DKE9|GMPAA_XENLA Mannose-1-phosphate guanyltransferase alpha-A OS=Xenopus laevis GN=gmppa-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 186/430 (43%), Positives = 257/430 (59%), Gaps = 42/430 (9%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PMV H I AC K I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ E ++ +RYL+E G+ G +Y+FRD I+ P F++N DVC FPL
Sbjct: 64 ALNSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNADVCSEFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESAS--QFGELVADPDTNELLHYTEKPETFVSDLINC 181
MLD H+ +GG + +++ +A +G +VA+ DT E+LHY EKP TFVSD+INC
Sbjct: 124 VSMLDFHKQHGGSQSYVILGTTANRTQSLNYGCIVANRDTQEVLHYVEKPGTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+F+P IF I V Q + L SS++ + + +RL+QD+ S LAG+
Sbjct: 184 GIYLFSPSIFQHIAEVFQQNQQELQLEENSSWQRM---------EVIRLEQDVFSTLAGR 234
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNA--TIIGDVYVH 299
+LY Y+T W QIK+ G ++ S LYL+Q+ T P LAS TK TI G+VY+H
Sbjct: 235 GKLYVYKTEGCWSQIKSAGSAIYASRLYLSQYGTTHPERLAS---TKEGGPTIRGNVYIH 291
Query: 300 PSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRW 359
P+A + P+A +GPNVSI + AGVR+ IIL G + +++ V N IVGW S +GRW
Sbjct: 292 PTANVDPSAVLGPNVSIGMGVTVAAGVRIRESIILHGAVLQDHSCVLNTIVGWDSMVGRW 351
Query: 360 SRVQ----------------AEGDF-NAKL--GITILGEAVGVEDEVVVTNSIVLPNKTL 400
+RV+ +E F + KL ITILG V + EVV+ NSIVLP+K L
Sbjct: 352 ARVEGTPSDPNPNDPYSKIDSETLFRDGKLTPSITILGCNVSIPAEVVILNSIVLPHKEL 411
Query: 401 NVSVHQEIIL 410
+ S +IIL
Sbjct: 412 SRSFKNQIIL 421
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q5XIC1|GMPPA_RAT Mannose-1-phosphate guanyltransferase alpha OS=Rattus norvegicus GN=Gmppa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (841), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 178/426 (41%), Positives = 249/426 (58%), Gaps = 35/426 (8%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +PVRYL+E P G+ G LY+FRD I+ P F+LN DVC FPL
Sbjct: 64 ALTQFLEAAQQEFNLPVRYLQEFTPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
MLDAHR +L + + +G +V +P T+E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLDAHRLQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ S + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDV-FQRNQQDGQLEESPGSWPGAGT-------IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL ++++T P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLAR-HTAGGPRIRGNVYIHPTAK 294
Query: 304 IHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363
+ P+A +GPNVSI IG GVRL I+L G + E+ V ++IVGW S++GRW+RV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 364 AE------GDFNAKL-------------GITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 404
D A++ ITILG V + EV++ NSIVLP+K L+ S
Sbjct: 355 GTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 405 HQEIIL 410
+IIL
Sbjct: 415 TNQIIL 420
|
Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q922H4|GMPPA_MOUSE Mannose-1-phosphate guanyltransferase alpha OS=Mus musculus GN=Gmppa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (839), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 177/426 (41%), Positives = 249/426 (58%), Gaps = 35/426 (8%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +PVRYL+E P G+ G LY+FRD I+ P F+LN DVC FPL
Sbjct: 64 ALTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
ML+AHR +L + + +G +V +P T+E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ S + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDV-FQRNQQDGQLEESPGSWPGAGT-------IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL ++++T P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLAR-HTPGGPRIRGNVYIHPTAK 294
Query: 304 IHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363
+ P+A +GPNVSI IG GVRL I+L G + E+ V ++IVGW S++GRW+RV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 364 AE------GDFNAKL-------------GITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 404
D A++ ITILG V + EV++ NSIVLP+K L+ S
Sbjct: 355 GTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 405 HQEIIL 410
+IIL
Sbjct: 415 TNQIIL 420
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|B0CM52|GMPPA_PAPAN Mannose-1-phosphate guanyltransferase alpha OS=Papio anubis GN=GMPPA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 176/426 (41%), Positives = 250/426 (58%), Gaps = 35/426 (8%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +PVRYL+E P G+ G LY+FRD I+ +P F+LN DVC FPL
Sbjct: 64 PLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
ML+AHR +L + + +G +V +P T+E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ S + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDV-FQRNQQDGQLEDSPGLWPGAGT-------IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL++++ T P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAK-HTPGGPRIRGNVYIHPTAK 294
Query: 304 IHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363
+ P+A +GPNVSI +G GVRL I+L G + E+ V ++IVGW S++GRW+RV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 364 AE------GDFNAKL-------------GITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 404
D A++ ITILG V + EV++ NSIVLP+K L+ S
Sbjct: 355 GTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 405 HQEIIL 410
+IIL
Sbjct: 415 TNQIIL 420
|
Papio anubis (taxid: 9555) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q96IJ6|GMPPA_HUMAN Mannose-1-phosphate guanyltransferase alpha OS=Homo sapiens GN=GMPPA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 176/426 (41%), Positives = 250/426 (58%), Gaps = 35/426 (8%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +PVRYL+E P G+ G LY+FRD I+ +P F+LN DVC FPL
Sbjct: 64 PLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
ML+AHR +L + + +G +V +P T+E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ S + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDV-FQRNQQDGQLEDSPGLWPGAGT-------IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL++++ T P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAK-HTPGGPWIRGNVYIHPTAK 294
Query: 304 IHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363
+ P+A +GPNVSI +G GVRL I+L G + E+ V ++IVGW S++GRW+RV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 364 AE------GDFNAKL-------------GITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 404
D A++ ITILG V + EV++ NSIVLP+K L+ S
Sbjct: 355 GTPSDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 405 HQEIIL 410
+IIL
Sbjct: 415 TNQIIL 420
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 410 | ||||||
| 255540799 | 415 | mannose-1-phosphate guanyltransferase, p | 0.997 | 0.985 | 0.887 | 0.0 | |
| 224135729 | 415 | predicted protein [Populus trichocarpa] | 0.997 | 0.985 | 0.884 | 0.0 | |
| 297842235 | 415 | ADP-glucose pyrophosphorylase family pro | 0.997 | 0.985 | 0.853 | 0.0 | |
| 15222037 | 415 | ADP-glucose pyrophosphorylase-like prote | 0.997 | 0.985 | 0.850 | 0.0 | |
| 224121622 | 417 | predicted protein [Populus trichocarpa] | 0.997 | 0.980 | 0.858 | 0.0 | |
| 5882732 | 411 | Similar to gb|AF135422 GDP-mannose pyrop | 0.985 | 0.982 | 0.851 | 0.0 | |
| 94962375 | 415 | putative GDP-mannose pyrophosphorylase [ | 0.997 | 0.985 | 0.865 | 0.0 | |
| 225457154 | 415 | PREDICTED: mannose-1-phosphate guanyltra | 0.997 | 0.985 | 0.867 | 0.0 | |
| 225452650 | 415 | PREDICTED: mannose-1-phosphate guanyltra | 0.997 | 0.985 | 0.834 | 0.0 | |
| 296087766 | 418 | unnamed protein product [Vitis vinifera] | 0.997 | 0.978 | 0.828 | 0.0 |
| >gi|255540799|ref|XP_002511464.1| mannose-1-phosphate guanyltransferase, putative [Ricinus communis] gi|223550579|gb|EEF52066.1| mannose-1-phosphate guanyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/416 (88%), Positives = 387/416 (93%), Gaps = 7/416 (1%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSS D+KVVAVIMVGGPTKGTRFRPLSLN+ KPLFPL GQPMVHHPISACKRI
Sbjct: 1 MGSS-DEKVVAVIMVGGPTKGTRFRPLSLNVAKPLFPLAGQPMVHHPISACKRIPNLAQI 59
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVSSISNEL+IPVRYLREDKPHGSAG LYNFRDLIMED+PSHIFLLN
Sbjct: 60 YLVGFYEEREFALYVSSISNELKIPVRYLREDKPHGSAGGLYNFRDLIMEDSPSHIFLLN 119
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLPEMLDAHR YGGMGTILVIKVSAESASQFGEL+ADP T ELLHYTEKPETF
Sbjct: 120 CDVCCSFPLPEMLDAHRRYGGMGTILVIKVSAESASQFGELIADPVTKELLHYTEKPETF 179
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSDLINCGVYVFTPDIF AIQGVSSQRKDR NLRRVSSFEALQS TR+L TDFVRLDQDI
Sbjct: 180 VSDLINCGVYVFTPDIFTAIQGVSSQRKDRANLRRVSSFEALQSTTRSLPTDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKKQ YTYET DFWEQIKTPGMSLKCS LYLAQFR TSP+LLASGDG+K+ATI+G
Sbjct: 240 LSPLAGKKQFYTYETSDFWEQIKTPGMSLKCSALYLAQFRYTSPHLLASGDGSKSATIVG 299
Query: 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKS 354
DVY+HPSAK+HPTAKIGPNVSISANAR+G G RLISCIILD VE+MENAVV +AI+GWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARVGPGARLISCIILDDVEVMENAVVIHAILGWKS 359
Query: 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 410
SIGRWSRVQA GDFN+KLGITILGEAV VEDEVVV NSIVLPNKTLNVSV +EIIL
Sbjct: 360 SIGRWSRVQAAGDFNSKLGITILGEAVCVEDEVVVVNSIVLPNKTLNVSVQEEIIL 415
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135729|ref|XP_002322146.1| predicted protein [Populus trichocarpa] gi|222869142|gb|EEF06273.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/416 (88%), Positives = 389/416 (93%), Gaps = 7/416 (1%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSSE+ +VVAVIMVGGPTKGTRFRPLSLNIPKPLFPL GQPMVHHPISACK+I
Sbjct: 1 MGSSEE-RVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKKIPNLAQI 59
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVSSISNEL++PVRYLREDKPHGSAG LYNFRDLIMED+PSHIFLLN
Sbjct: 60 YLVGFYEEREFALYVSSISNELKVPVRYLREDKPHGSAGGLYNFRDLIMEDSPSHIFLLN 119
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLPEML+AHR YGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF
Sbjct: 120 CDVCCSFPLPEMLEAHRTYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 179
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSD INCGVYVFTP+IF AIQ VSSQRKDR NLRR+SSFEALQSATR+L TDFVRLDQDI
Sbjct: 180 VSDRINCGVYVFTPEIFTAIQDVSSQRKDRANLRRISSFEALQSATRSLPTDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFR TSP+LLA GDG+K ATI+
Sbjct: 240 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRFTSPHLLAGGDGSKTATIVD 299
Query: 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKS 354
DVY+HPSAK+HPTAKIGPNVSISANARIG G RLI CIILD VE+MENAVV ++IVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARIGPGARLICCIILDDVEVMENAVVIHSIVGWKS 359
Query: 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 410
SIGRWSRVQAEGD+NAKLG+TILGEAV VEDEVVV NSIVLPNKTLNVSV +EIIL
Sbjct: 360 SIGRWSRVQAEGDYNAKLGVTILGEAVTVEDEVVVVNSIVLPNKTLNVSVQEEIIL 415
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842235|ref|XP_002888999.1| ADP-glucose pyrophosphorylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297334840|gb|EFH65258.1| ADP-glucose pyrophosphorylase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/416 (85%), Positives = 387/416 (93%), Gaps = 7/416 (1%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSS ++KVVAVIMVGGPTKGTRFRPLSLNIPKPLFP+ GQPMVHHPISACKRI
Sbjct: 1 MGSSMEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQI 60
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVS+ISNEL++PVRYLREDKPHGSAG LY+FR+LIMED+PSHIFLLN
Sbjct: 61 YLVGFYEEREFALYVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLN 120
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLPEML+AHR YGG+GT+LVIKVS ESASQFGELVADP TNELLHYTEKPETF
Sbjct: 121 CDVCCSFPLPEMLEAHRGYGGIGTLLVIKVSPESASQFGELVADPATNELLHYTEKPETF 180
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSD INCGVYVFTP+IFNAI VS+QRKDR L+RVSSFEALQ ATR + TDFVRLDQDI
Sbjct: 181 VSDRINCGVYVFTPEIFNAIGDVSTQRKDRATLKRVSSFEALQPATR-IPTDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKKQLYTYETMDFWEQIK+PGMSL+CSGLYL+QFRLT+P LLASGDGT++A +IG
Sbjct: 240 LSPLAGKKQLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTAPQLLASGDGTRSAIVIG 299
Query: 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKS 354
DVY+HPSAK+HPTAKIGPNVSISANAR+G GVRLISCIILD VEIMENAVVTNAIVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARVGPGVRLISCIILDDVEIMENAVVTNAIVGWKS 359
Query: 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 410
SIGRWSRVQAEG +N+KLG+TILG++V VEDEVVVT+ IVLPNKTLNVSV EIIL
Sbjct: 360 SIGRWSRVQAEGVYNSKLGVTILGDSVAVEDEVVVTSCIVLPNKTLNVSVQDEIIL 415
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222037|ref|NP_177629.1| ADP-glucose pyrophosphorylase-like protein [Arabidopsis thaliana] gi|30699054|ref|NP_849886.1| ADP-glucose pyrophosphorylase-like protein [Arabidopsis thaliana] gi|12323882|gb|AAG51908.1|AC013258_2 putative GDP-mannose pyrophosphorylase; 64911-67597 [Arabidopsis thaliana] gi|13937224|gb|AAK50104.1|AF372967_1 At1g74910/F9E10_24 [Arabidopsis thaliana] gi|21700877|gb|AAM70562.1| At1g74910/F9E10_24 [Arabidopsis thaliana] gi|332197525|gb|AEE35646.1| ADP-glucose pyrophosphorylase-like protein [Arabidopsis thaliana] gi|332197527|gb|AEE35648.1| ADP-glucose pyrophosphorylase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/416 (85%), Positives = 388/416 (93%), Gaps = 7/416 (1%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSS ++KVVAVIMVGGPTKGTRFRPLSLNIPKPLFP+ GQPMVHHPISACKRI
Sbjct: 1 MGSSMEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQI 60
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVS+ISNEL++PVRYLREDKPHGSAG LY+FR+LIMED+PSHIFLLN
Sbjct: 61 YLVGFYEEREFALYVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLN 120
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLP+ML+AHR YGG+GT+LVIKVS ESASQFGELVADP TNELLHYTEKPETF
Sbjct: 121 CDVCCSFPLPKMLEAHRGYGGIGTLLVIKVSPESASQFGELVADPVTNELLHYTEKPETF 180
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSD INCGVYVFTP+IFNAI VS+QRKDR L+RVSSFEALQ ATR + TDFVRLDQDI
Sbjct: 181 VSDRINCGVYVFTPEIFNAIGDVSTQRKDRATLKRVSSFEALQPATR-IPTDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKK+LYTYETMDFWEQIK+PGMSL+CSGLYL+QFRLTSP LLASGDGT++A +IG
Sbjct: 240 LSPLAGKKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIG 299
Query: 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKS 354
DVY+HPSAK+HPTAKIGPNVSISANAR+G GVRL+SCIILD VEIMENAVVTNAIVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARVGPGVRLMSCIILDDVEIMENAVVTNAIVGWKS 359
Query: 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 410
SIGRWSRVQAEG +N+KLG+TILG++V VEDEVVVT+SIVLPNKTLNVSV EIIL
Sbjct: 360 SIGRWSRVQAEGVYNSKLGVTILGDSVAVEDEVVVTSSIVLPNKTLNVSVQDEIIL 415
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121622|ref|XP_002318629.1| predicted protein [Populus trichocarpa] gi|222859302|gb|EEE96849.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/418 (85%), Positives = 382/418 (91%), Gaps = 9/418 (2%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSSE+ +VVAVIMVGGPTKGTRFRPLSL+IPKPLFPL GQPMVHHPISACK+I
Sbjct: 1 MGSSEE-RVVAVIMVGGPTKGTRFRPLSLDIPKPLFPLAGQPMVHHPISACKKIPNLTQI 59
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVSSISNEL++ VRYLREDKPHGSAG L+NFRDLIMEDNPSHIFLLN
Sbjct: 60 YLVGFYEEREFALYVSSISNELKVSVRYLREDKPHGSAGGLFNFRDLIMEDNPSHIFLLN 119
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLPEML+AHR YGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF
Sbjct: 120 CDVCCSFPLPEMLEAHRAYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 179
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATR--NLTTDFVRLDQ 232
VSD INCGVYVFTP+IF AIQGVSSQRKDR NLRRVSSFEALQ +TR +L TD+VRLDQ
Sbjct: 180 VSDRINCGVYVFTPEIFTAIQGVSSQRKDRANLRRVSSFEALQFSTRHLHLPTDYVRLDQ 239
Query: 233 DILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATI 292
DILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQF+ TSP+LLA GDG+K+ATI
Sbjct: 240 DILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFQFTSPHLLAGGDGSKSATI 299
Query: 293 IGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGW 352
GDVY+HPSAK+HPTAKIGPNVSISANARIG G RLI CIILD VE+MENAVV +IVGW
Sbjct: 300 EGDVYIHPSAKVHPTAKIGPNVSISANARIGPGARLIRCIILDNVEVMENAVVIYSIVGW 359
Query: 353 KSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 410
SSIGRWSRVQA D+NAKLG+TILGE V VEDEVVV NSIVLP KTL+VSV EIIL
Sbjct: 360 NSSIGRWSRVQASCDYNAKLGVTILGEGVTVEDEVVVINSIVLPYKTLDVSVQDEIIL 417
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5882732|gb|AAD55285.1|AC008263_16 Similar to gb|AF135422 GDP-mannose pyrophosphorylase A (GMPPA) from Homo sapiens. ESTs gb|AA712990, gb|N65247, gb|N38149, gb|T04179, gb|Z38092, gb|T76473, gb|N96403, gb|AA394551 and gb|AA728527 come from this gene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/411 (85%), Positives = 384/411 (93%), Gaps = 7/411 (1%)
Query: 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------YLVGF 59
++KVVAVIMVGGPTKGTRFRPLSLNIPKPLFP+ GQPMVHHPISACKRI YLVGF
Sbjct: 2 EEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQIYLVGF 61
Query: 60 YEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119
YEEREFALYVS+ISNEL++PVRYLREDKPHGSAG LY+FR+LIMED+PSHIFLLNCDVCC
Sbjct: 62 YEEREFALYVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLNCDVCC 121
Query: 120 SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLI 179
SFPLP+ML+AHR YGG+GT+LVIKVS ESASQFGELVADP TNELLHYTEKPETFVSD I
Sbjct: 122 SFPLPKMLEAHRGYGGIGTLLVIKVSPESASQFGELVADPVTNELLHYTEKPETFVSDRI 181
Query: 180 NCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239
NCGVYVFTP+IFNAI VS+QRKDR L+RVSSFEALQ ATR + TDFVRLDQDILSPLA
Sbjct: 182 NCGVYVFTPEIFNAIGDVSTQRKDRATLKRVSSFEALQPATR-IPTDFVRLDQDILSPLA 240
Query: 240 GKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVH 299
GKK+LYTYETMDFWEQIK+PGMSL+CSGLYL+QFRLTSP LLASGDGT++A +IGDVY+H
Sbjct: 241 GKKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIGDVYIH 300
Query: 300 PSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRW 359
PSAK+HPTAKIGPNVSISANAR+G GVRL+SCIILD VEIMENAVVTNAIVGWKSSIGRW
Sbjct: 301 PSAKVHPTAKIGPNVSISANARVGPGVRLMSCIILDDVEIMENAVVTNAIVGWKSSIGRW 360
Query: 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 410
SRVQAEG +N+KLG+TILG++V VEDEVVVT+SIVLPNKTLNVSV EIIL
Sbjct: 361 SRVQAEGVYNSKLGVTILGDSVAVEDEVVVTSSIVLPNKTLNVSVQDEIIL 411
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|94962375|gb|ABF48494.1| putative GDP-mannose pyrophosphorylase [Linum usitatissimum] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/416 (86%), Positives = 386/416 (92%), Gaps = 7/416 (1%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MG SE+ +VVAVIMVGGPTKGTRFRPLSLNIPKPLFPL GQPMVHHPISACKRI
Sbjct: 1 MGISEE-RVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKRIPNLAQI 59
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFA YVS+ISNELR+PVRYLREDKPHGSAG LYNFRDL+MED+P+HIFLLN
Sbjct: 60 YLVGFYEEREFAWYVSAISNELRVPVRYLREDKPHGSAGGLYNFRDLVMEDDPTHIFLLN 119
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLPEML+AHR YGG+GT+LVIKVSAESASQFGELVADPDT ELLHYTEKPETF
Sbjct: 120 CDVCCSFPLPEMLEAHRRYGGIGTLLVIKVSAESASQFGELVADPDTKELLHYTEKPETF 179
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSDLINCGVYVFTP+IF AIQGVSSQ KDR NLRRVSSFEALQSATR+ DFVRLDQDI
Sbjct: 180 VSDLINCGVYVFTPEIFTAIQGVSSQLKDRANLRRVSSFEALQSATRSFPADFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKKQLYTYET DFWEQIKTPGMSLKCS LYLAQFR TSP+LLASGDG+K+ATI+G
Sbjct: 240 LSPLAGKKQLYTYETRDFWEQIKTPGMSLKCSSLYLAQFRFTSPHLLASGDGSKSATIVG 299
Query: 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKS 354
DVY+HPSAK+HPTAK+GPNVSISANARIG G RLISCIILD VE+MENAVV N+IVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKLGPNVSISANARIGPGARLISCIILDDVEVMENAVVINSIVGWKS 359
Query: 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 410
SIG+WSRVQAEG +NAKLG+TILGEAV VEDEVVV NSIVLP+KTLNVSV +EIIL
Sbjct: 360 SIGKWSRVQAEGVYNAKLGVTILGEAVTVEDEVVVVNSIVLPHKTLNVSVQEEIIL 415
|
Source: Linum usitatissimum Species: Linum usitatissimum Genus: Linum Family: Linaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457154|ref|XP_002283703.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha isoform 1 [Vitis vinifera] gi|297733847|emb|CBI15094.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/416 (86%), Positives = 386/416 (92%), Gaps = 7/416 (1%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSSE+ +VVAVIMVGGPTKGTRFRPLSLN PKPLFPL GQPMVHHPIS CKRI
Sbjct: 1 MGSSEE-RVVAVIMVGGPTKGTRFRPLSLNTPKPLFPLAGQPMVHHPISGCKRIPNLAQI 59
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVSSIS+ELR+PVRYL+EDKPHGSAG LYNFRDLIMEDNPSHI LLN
Sbjct: 60 YLVGFYEEREFALYVSSISSELRVPVRYLKEDKPHGSAGGLYNFRDLIMEDNPSHIVLLN 119
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLPEML+AH YGGMGTILVIKVSAESASQFGELVADP TNELLHYTEKPETF
Sbjct: 120 CDVCCSFPLPEMLEAHIRYGGMGTILVIKVSAESASQFGELVADPVTNELLHYTEKPETF 179
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSDLINCGVY+FTPDIF AIQGVS+QRK+R +LRR+SSFEALQSATR+L DFVRLDQDI
Sbjct: 180 VSDLINCGVYIFTPDIFTAIQGVSTQRKERADLRRLSSFEALQSATRSLPKDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKKQLYTYETM FWEQIKTPGMSLKCS LYL+Q++ T PNLLASGDGTK+ATIIG
Sbjct: 240 LSPLAGKKQLYTYETMGFWEQIKTPGMSLKCSALYLSQYQFTFPNLLASGDGTKSATIIG 299
Query: 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKS 354
+VY+HPSAK+HPTAKIGPNVSISANARIGAGVRLISC+ILD VEI ENAVV +AIVGWKS
Sbjct: 300 NVYIHPSAKVHPTAKIGPNVSISANARIGAGVRLISCVILDDVEIKENAVVIHAIVGWKS 359
Query: 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 410
S+G+WSRVQA GD+NAKLGITILGEAV VEDEVVV NSIVLPNKTLNVSV +EIIL
Sbjct: 360 SVGKWSRVQAGGDYNAKLGITILGEAVAVEDEVVVVNSIVLPNKTLNVSVQEEIIL 415
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452650|ref|XP_002281959.1| PREDICTED: mannose-1-phosphate guanyltransferase alpha-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/416 (83%), Positives = 373/416 (89%), Gaps = 7/416 (1%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
M SSE+ KVVAVIMVGGPTKGTRFRPLS N KPLFPL GQPMVHHPISACKRI
Sbjct: 1 MQSSEE-KVVAVIMVGGPTKGTRFRPLSFNTLKPLFPLAGQPMVHHPISACKRIPNLAQI 59
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
+LVGFYEERE ALYVSS+SNEL++P+RYL+EDKPHGSAG LY FRD+IMED PSHIFLLN
Sbjct: 60 FLVGFYEERELALYVSSVSNELKVPIRYLKEDKPHGSAGGLYYFRDVIMEDAPSHIFLLN 119
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCC+FPLP+ML HR GGMGT+LVIKVSAESA+QFGELVADP TNELLHY EKPETF
Sbjct: 120 CDVCCTFPLPDMLVEHRRNGGMGTVLVIKVSAESANQFGELVADPTTNELLHYIEKPETF 179
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSDLINCGVYVFTPDIF AIQGVS+ R+DR +LRRVSSFEALQSATR TDFVRLDQDI
Sbjct: 180 VSDLINCGVYVFTPDIFTAIQGVSTHREDRASLRRVSSFEALQSATRTHPTDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKKQLYTYET DFWEQIKTPGMSLKCS LYLAQFR TSP+LLASGDGTK+ATI+G
Sbjct: 240 LSPLAGKKQLYTYETTDFWEQIKTPGMSLKCSSLYLAQFRYTSPHLLASGDGTKSATIVG 299
Query: 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKS 354
DVY+HPSAK+HPTAKIGPNVSISAN RIGAGVRL CIILD VEI ENAVV +AIVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANVRIGAGVRLSDCIILDDVEIKENAVVMHAIVGWKS 359
Query: 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 410
IG+WSRVQAEGD+NAKLGI I+GE+V VEDEVVV NSIVLPNKTLN SV +EIIL
Sbjct: 360 FIGKWSRVQAEGDYNAKLGIAIIGESVTVEDEVVVINSIVLPNKTLNDSVQEEIIL 415
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087766|emb|CBI35022.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/419 (82%), Positives = 373/419 (89%), Gaps = 10/419 (2%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
M SSE+ KVVAVIMVGGPTKGTRFRPLS N KPLFPL GQPMVHHPISACKRI
Sbjct: 1 MQSSEE-KVVAVIMVGGPTKGTRFRPLSFNTLKPLFPLAGQPMVHHPISACKRIPNLAQI 59
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
+LVGFYEERE ALYVSS+SNEL++P+RYL+EDKPHGSAG LY FRD+IMED PSHIFLLN
Sbjct: 60 FLVGFYEERELALYVSSVSNELKVPIRYLKEDKPHGSAGGLYYFRDVIMEDAPSHIFLLN 119
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCC+FPLP+ML HR GGMGT+LVIKVSAESA+QFGELVADP TNELLHY EKPETF
Sbjct: 120 CDVCCTFPLPDMLVEHRRNGGMGTVLVIKVSAESANQFGELVADPTTNELLHYIEKPETF 179
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSDLINCGVYVFTPDIF AIQGVS+ R+DR +LRRVSSFEALQSATR TDFVRLDQDI
Sbjct: 180 VSDLINCGVYVFTPDIFTAIQGVSTHREDRASLRRVSSFEALQSATRTHPTDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKKQLYTYET DFWEQIKTPGMSLKCS LYLAQFR TSP+LLASGDGTK+ATI+G
Sbjct: 240 LSPLAGKKQLYTYETTDFWEQIKTPGMSLKCSSLYLAQFRYTSPHLLASGDGTKSATIVG 299
Query: 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKS 354
DVY+HPSAK+HPTAKIGPNVSISAN RIGAGVRL CIILD VEI ENAVV +AIVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANVRIGAGVRLSDCIILDDVEIKENAVVMHAIVGWKS 359
Query: 355 SIGRWSRVQ---AEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQEIIL 410
IG+WSRVQ AEGD+NAKLGI I+GE+V VEDEVVV NSIVLPNKTLN SV +EIIL
Sbjct: 360 FIGKWSRVQASLAEGDYNAKLGIAIIGESVTVEDEVVVINSIVLPNKTLNDSVQEEIIL 418
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 410 | ||||||
| TAIR|locus:2027201 | 415 | AT1G74910 [Arabidopsis thalian | 0.997 | 0.985 | 0.829 | 2e-184 | |
| TAIR|locus:2049188 | 406 | AT2G04650 [Arabidopsis thalian | 0.968 | 0.977 | 0.759 | 2.1e-164 | |
| DICTYBASE|DDB_G0271858 | 412 | gmppA "mannose-1-phosphate gua | 0.953 | 0.949 | 0.417 | 1.7e-84 | |
| ZFIN|ZDB-GENE-040426-1550 | 422 | gmppab "GDP-mannose pyrophosph | 0.839 | 0.815 | 0.461 | 2.2e-82 | |
| ZFIN|ZDB-GENE-040704-37 | 422 | gmppaa "GDP-mannose pyrophosph | 0.836 | 0.812 | 0.449 | 2.6e-79 | |
| UNIPROTKB|E1BEN4 | 420 | GMPPA "Uncharacterized protein | 0.953 | 0.930 | 0.417 | 1.1e-78 | |
| RGD|1560644 | 420 | Gmppa "GDP-mannose pyrophospho | 0.953 | 0.930 | 0.413 | 1.3e-77 | |
| ASPGD|ASPL0000047492 | 439 | AN1911 [Emericella nidulans (t | 0.963 | 0.899 | 0.4 | 2.1e-77 | |
| MGI|MGI:1916330 | 420 | Gmppa "GDP-mannose pyrophospho | 0.953 | 0.930 | 0.410 | 2.1e-77 | |
| UNIPROTKB|I3LUP1 | 419 | GMPPA "Uncharacterized protein | 0.951 | 0.930 | 0.415 | 3.4e-77 |
| TAIR|locus:2027201 AT1G74910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1789 (634.8 bits), Expect = 2.0e-184, P = 2.0e-184
Identities = 345/416 (82%), Positives = 377/416 (90%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------ 54
MGSS ++KVVAVIMVGGPTKGTRFRPLSLNIPKPLFP+ GQPMVHHPISACKRI
Sbjct: 1 MGSSMEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQI 60
Query: 55 YLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
YLVGFYEEREFALYVS+ISNEL++PVRYLREDKPHGSAG LY+FR+LIMED+PSHIFLLN
Sbjct: 61 YLVGFYEEREFALYVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLN 120
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETF 174
CDVCCSFPLP+ML+AHR YGG+GT+LVIKVS ESASQFGELVADP TNELLHYTEKPETF
Sbjct: 121 CDVCCSFPLPKMLEAHRGYGGIGTLLVIKVSPESASQFGELVADPVTNELLHYTEKPETF 180
Query: 175 VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234
VSD INCGVYVFTP+IFNAI VS+QRKDR L+RVSSFEALQ ATR + TDFVRLDQDI
Sbjct: 181 VSDRINCGVYVFTPEIFNAIGDVSTQRKDRATLKRVSSFEALQPATR-IPTDFVRLDQDI 239
Query: 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG 294
LSPLAGKK+LYTYETMDFWEQIK+PGMSL+CSGLYL+QFRLTSP LLASGDGT++A +IG
Sbjct: 240 LSPLAGKKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIG 299
Query: 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKS 354
DVY+HPSAK+HPTAKIGPNVSISANAR+G GVRL+SCIILD VEIMENAVVTNAIVGWKS
Sbjct: 300 DVYIHPSAKVHPTAKIGPNVSISANARVGPGVRLMSCIILDDVEIMENAVVTNAIVGWKS 359
Query: 355 SIGRWSRVQAEGDFNAKLGITILXXXXXXXXXXXXTNSIVLPNKTLNVSVHQEIIL 410
SIGRWSRVQAEG +N+KLG+TIL T+SIVLPNKTLNVSV EIIL
Sbjct: 360 SIGRWSRVQAEGVYNSKLGVTILGDSVAVEDEVVVTSSIVLPNKTLNVSVQDEIIL 415
|
|
| TAIR|locus:2049188 AT2G04650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1600 (568.3 bits), Expect = 2.1e-164, P = 2.1e-164
Identities = 313/412 (75%), Positives = 346/412 (83%)
Query: 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------YLVGF 59
++KVVAVIMVGGPTKGTRFRPLS N PKPL PL GQPM+HHPISACK+I +L+GF
Sbjct: 3 EEKVVAVIMVGGPTKGTRFRPLSFNTPKPLIPLAGQPMIHHPISACKKISNLAQIFLIGF 62
Query: 60 YEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119
YEEREFALYVSSISNEL+IPVRYL+EDKPHGSAGALY FRD IME+ PSH+FLLNCDVCC
Sbjct: 63 YEEREFALYVSSISNELKIPVRYLKEDKPHGSAGALYYFRDRIMEEKPSHVFLLNCDVCC 122
Query: 120 SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLI 179
SFPL +LDAHR YGG+GT+LVIKVSAE+ASQFGEL+ADPDT ELLHYTEKPETFVSDLI
Sbjct: 123 SFPLQGILDAHRRYGGIGTMLVIKVSAEAASQFGELIADPDTKELLHYTEKPETFVSDLI 182
Query: 180 NCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239
NCGVYVFT DIFNAI+ V SQ +D S++ QSATR++ DFVRLDQDILSPLA
Sbjct: 183 NCGVYVFTSDIFNAIEEVYSQIRDTS-----SNY---QSATRSVPADFVRLDQDILSPLA 234
Query: 240 GKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGT-KNATIIGDVYV 298
GKKQLYTYE DFWEQIKTPG SLKCS LYL+QFR TSP++LASGDGT + TIIGDVY+
Sbjct: 235 GKKQLYTYENKDFWEQIKTPGKSLKCSALYLSQFRETSPHILASGDGTNRKPTIIGDVYI 294
Query: 299 HPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGR 358
HPS K+HPTAKIGPNVSISAN R+G GVRLISCIILD VEI ENAVV N+I+GWKSSIGR
Sbjct: 295 HPSVKLHPTAKIGPNVSISANVRVGPGVRLISCIILDDVEIKENAVVINSIIGWKSSIGR 354
Query: 359 WSRVQAEGDFNAKLGITILXXXXXXXXXXXXTNSIVLPNKTLNVSVHQEIIL 410
WSRVQA GD+N +LGITIL SIVL NKTLNVSV +IIL
Sbjct: 355 WSRVQASGDYNDRLGITILGEAVTVEDEVAVIGSIVLQNKTLNVSVQDDIIL 406
|
|
| DICTYBASE|DDB_G0271858 gmppA "mannose-1-phosphate guanylyltransferase alpha" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 173/414 (41%), Positives = 257/414 (62%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
A+I+VGGP+KGTRFRPLSL++PK LFP+ G+PM++H I AC K I L+GF++E
Sbjct: 8 AIILVGGPSKGTRFRPLSLDVPKLLFPIAGKPMIYHHIEACSKVENMKEIILIGFFQESV 67
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
+ ++S S +L + +RY+ E+K G+AG LY+FRD+I+E PS IF+L+ D+CC+FPL
Sbjct: 68 LSKFISETSKQLNVAIRYINEEKVLGTAGGLYHFRDIILEGGPSEIFVLHSDICCAFPLN 127
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
++L H+ +G TI+ ++ + A+Q+G LV D T ELLHY EKPETFVS+LINCGVY
Sbjct: 128 DLLQFHKQHGRSCTIMGTEIESAYANQYGCLVRDEKTAELLHYAEKPETFVSNLINCGVY 187
Query: 185 VFTPDIFNAI-QGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
F+P F+ I + + + +N+ + + + + + +RL+QDI PLAG
Sbjct: 188 CFSPQFFDVIGKTMIDLKTSGQNI--TTDYPEI--TRKGFDVERLRLEQDIFVPLAGTGF 243
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+ Y + FW QIK G S+ C LYL F T P +L G+ IIG+V + +A
Sbjct: 244 ISVYPYVGFWRQIKNAGSSVYCQELYLNHFAKTKPEVLKKGNN-----IIGNVIIDSTAS 298
Query: 304 IHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363
+ P+A IGP+V I N +IG GVR+I IILD EI ++A + +I+GW+S IG W+R++
Sbjct: 299 VDPSAIIGPDVYIGPNVKIGKGVRVIHSIILDQTEIKDHACIIYSIIGWQSLIGVWARIE 358
Query: 364 AEGDFNAKL-------GITILXXXXXXXXXXXXTNSIVLPNKTLNVSVHQEIIL 410
++ L G+TI +N IV+P+K L+ + + EIIL
Sbjct: 359 GIPNYTPFLYSQDKRRGVTIFGAGAQANGEIIVSNCIVMPHKQLDRNYNNEIIL 412
|
|
| ZFIN|ZDB-GENE-040426-1550 gmppab "GDP-mannose pyrophosphorylase Ab" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 167/362 (46%), Positives = 229/362 (63%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEER- 63
A+I++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC K I L+GFY+
Sbjct: 4 AIILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACAQVPDMKEIMLIGFYQPND 63
Query: 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
E ++ S E +IP+RYL+E G+ G +Y+FRD I+ P+ FL+N DVC FPL
Sbjct: 64 ELNRFIYSAQQEFKIPIRYLQEFAALGTGGGIYHFRDQILSGGPAAFFLMNADVCSEFPL 123
Query: 124 PEMLDAHRNYGG--MGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINC 181
EML HR +G G +L + + +G +V + +TNE+LH+ EKP TFVSD+INC
Sbjct: 124 LEMLQFHRQHGENHCGVLLGTTANRTQSLNYGCIVENHETNEVLHFVEKPSTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+FTPDIF I G QR +E ++ E L R + + VRL+QDI + LAG+
Sbjct: 184 GIYLFTPDIFAHI-GKVFQRNQQEKIQ-----EELTHG-RQMP-EVVRLEQDIFTALAGQ 235
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPS 301
K+L+ Y+T FW QIK+ G ++ S LYL Q+ T P LA+ G I GDVY+HP+
Sbjct: 236 KKLFVYKTQHFWSQIKSAGSAIYASRLYLKQYHQTHPERLATNQGG-TPKITGDVYIHPT 294
Query: 302 AKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSR 361
A I P+A +GPNVSI IG GVR+ IIL G + ++ V N+IVGW S++G+W+R
Sbjct: 295 ANIDPSAVLGPNVSIGKGVTIGGGVRVRESIILHGAVLQDHCCVLNSIVGWDSTVGKWAR 354
Query: 362 VQ 363
V+
Sbjct: 355 VE 356
|
|
| ZFIN|ZDB-GENE-040704-37 gmppaa "GDP-mannose pyrophosphorylase Aa" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 163/363 (44%), Positives = 230/363 (63%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYE-ER 63
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC K I L+GFY+
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACSKLPNMKEILLIGFYQPNE 63
Query: 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
E ++S + +I +RYL+E G+ G +Y+FRD I+ P F++N DVC FPL
Sbjct: 64 ELNRFLSCAQQDFKISIRYLQEYAALGTGGGIYHFRDQILSGGPDAFFVMNADVCSEFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSA--ESASQFGELVADPDTNELLHYTEKPETFVSDLINC 181
PEMLD + +G + +++ +A + + +G +V + T+E+LHY EKP TFVSD+INC
Sbjct: 124 PEMLDFQKEHGDTYSFVILGTTANRKQSLNYGCIVENEQTDEVLHYVEKPGTFVSDIINC 183
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241
G+Y+FTP+IF I V Q+ +E L S A + +RL+QDI + LAG+
Sbjct: 184 GIYLFTPEIFQHIGSVF-QKNQQEMLLEEQS-NGWHRA------EVIRLEQDIFTALAGQ 235
Query: 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG-DGTKNATIIGDVYVHP 300
+LY Y+T FW QIK+ G ++ S LYL Q+ T P LA+ +G A G+VY+HP
Sbjct: 236 GKLYVYKTDRFWSQIKSAGSAIYASRLYLNQYHKTHPERLATNTEG--GAKTRGNVYIHP 293
Query: 301 SAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWS 360
+A I PTA +GPNVSI IGAGVR+ IIL G + +++ V N+IVGW+S+IG+W+
Sbjct: 294 TANIDPTAVLGPNVSIGTGVTIGAGVRVRESIILHGATLQDHSCVLNSIVGWESTIGKWA 353
Query: 361 RVQ 363
RV+
Sbjct: 354 RVE 356
|
|
| UNIPROTKB|E1BEN4 GMPPA "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 178/426 (41%), Positives = 247/426 (57%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +P+RYL+E P G+ G LY+FRD I+ +P F+LN DVC FPL
Sbjct: 64 PLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
MLD HR+ +L + + +G +V +P T+E+LHY EKP TFVSD+INCG+
Sbjct: 124 SAMLDVHRHQPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ SS + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVF-QRNQQDGQLEDSSGLWPGAGT-------IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL+Q++LT P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLSQYQLTHPERLAKHT-PGGPRIRGNVYIHPTAK 294
Query: 304 IHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363
+ P+A +GPNVSI IG GVRL I+L G + E+ V ++IVGW S++GRW+RV+
Sbjct: 295 VAPSAVLGPNVSIGEGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 364 ----------------AEGDF-NAKL--GITILXXXXXXXXXXXXTNSIVLPNKTLNVSV 404
+E F + KL ITIL NSIVLP+K L+ S
Sbjct: 355 GTPNDPNPNDPRAHMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 405 HQEIIL 410
+IIL
Sbjct: 415 TNQIIL 420
|
|
| RGD|1560644 Gmppa "GDP-mannose pyrophosphorylase A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 176/426 (41%), Positives = 244/426 (57%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +PVRYL+E P G+ G LY+FRD I+ P F+LN DVC FPL
Sbjct: 64 ALTQFLEAAQQEFNLPVRYLQEFTPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
MLDAHR +L + + +G +V +P T+E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLDAHRLQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ E + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVF-QRNQQDG-----QLEESPGSWPGAGT--IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL ++++T P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLARHTAG-GPRIRGNVYIHPTAK 294
Query: 304 IHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363
+ P+A +GPNVSI IG GVRL I+L G + E+ V ++IVGW S++GRW+RV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 364 ----------------AEGDF-NAKL--GITILXXXXXXXXXXXXTNSIVLPNKTLNVSV 404
+E F + KL ITIL NSIVLP+K L+ S
Sbjct: 355 GTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 405 HQEIIL 410
+IIL
Sbjct: 415 TNQIIL 420
|
|
| ASPGD|ASPL0000047492 AN1911 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 170/425 (40%), Positives = 248/425 (58%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------YLVGFYEERE 64
A+I+VGGP++GTRFRPLSL++PKPLF + G P++HH + A ++ L+G+Y+E
Sbjct: 20 AIILVGGPSRGTRFRPLSLDVPKPLFEVAGHPIIHHCLKALAKVPELHEVILIGYYDETV 79
Query: 65 FALYVSSISNEL-RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
F ++ + E + + YLRE G+AG LY+FRD I++ P IF+LN DVCCSFPL
Sbjct: 80 FRDFIKDSAKEFPQFRISYLREYTALGTAGGLYHFRDPILKGKPERIFVLNADVCCSFPL 139
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
EML IL +V ++A+ FG +V+D T +LHY EKPE+ +S+LINCGV
Sbjct: 140 GEMLRLFEEKDAEAVILGTRVHNDAATNFGCIVSDSHTKRVLHYVEKPESHISNLINCGV 199
Query: 184 YVFTPD-IFNAIQGVSSQRKDRENLRRVSSFEALQSA----TRNLTTDFVRLDQDILSPL 238
Y+F + IF +I+ +R R L S + L+++ + T+ +RL+QDILS L
Sbjct: 200 YLFATECIFPSIRSTIKRRTTRPRLLSYPSSDNLEASFVADDDSERTEVLRLEQDILSDL 259
Query: 239 AGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQ-FRLTSPNLLASGDGTKNATIIGDVY 297
A + + +ET DFW QIKT G ++ + LYL + F+ S L A +ATI+ VY
Sbjct: 260 ADSNRFFVHETKDFWRQIKTAGSAVPANALYLQKAFQAQSEELAAP-----SATIVPPVY 314
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIG 357
+HP+A + PTAK+GPNVSI A +GAG R+ I+L+ EI +A V ++I+GW S +G
Sbjct: 315 IHPTASVDPTAKLGPNVSIGPRAIVGAGARVKDSIVLEDAEIKHDACVMHSIIGWSSRVG 374
Query: 358 RWSRVQAE----GDFNAKL--------GITILXXXXXXXXXXXXTNSIVLPNKTLNVSVH 405
W+RV+ G + + ITIL N + LP K L V
Sbjct: 375 AWARVEGTPIPMGSHSTSIIKNGVKVQSITILGKECGVGDEVRVQNCVCLPYKELKRDVA 434
Query: 406 QEIIL 410
E+I+
Sbjct: 435 NEVIM 439
|
|
| MGI|MGI:1916330 Gmppa "GDP-mannose pyrophosphorylase A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 175/426 (41%), Positives = 244/426 (57%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +PVRYL+E P G+ G LY+FRD I+ P F+LN DVC FPL
Sbjct: 64 ALTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
ML+AHR +L + + +G +V +P T+E+LHY EKP TF+SD+INCG+
Sbjct: 124 SAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ ++ V QR ++ E + T +RL+QD+ S LAG+ Q
Sbjct: 184 YLFSPEALKPLRDVF-QRNQQDG-----QLEESPGSWPGAGT--IRLEQDVFSALAGQGQ 235
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL ++++T P LA I G+VY+HP+AK
Sbjct: 236 IYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLARHT-PGGPRIRGNVYIHPTAK 294
Query: 304 IHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363
+ P+A +GPNVSI IG GVRL I+L G + E+ V ++IVGW S++GRW+RV+
Sbjct: 295 VAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 354
Query: 364 ----------------AEGDF-NAKL--GITILXXXXXXXXXXXXTNSIVLPNKTLNVSV 404
+E F + KL ITIL NSIVLP+K L+ S
Sbjct: 355 GTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 414
Query: 405 HQEIIL 410
+IIL
Sbjct: 415 TNQIIL 420
|
|
| UNIPROTKB|I3LUP1 GMPPA "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 177/426 (41%), Positives = 244/426 (57%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI++GGP KGTRFRPLS +PKPLFP+ G PM+ H I AC + I L+GFY+ E
Sbjct: 4 AVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDE 63
Query: 65 -FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
++ + E +P+RYL+E P G+ G LY+FRD I+ P F+LN DVC FPL
Sbjct: 64 PLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSDFPL 123
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
MLDAHR+ +L + + +G +V +P T+E+LHY EKP TFVSD+INCG+
Sbjct: 124 SAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIINCGI 183
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
Y+F+P+ G QR + SS + T +RL+QD+ + LAG+ Q
Sbjct: 184 YLFSPETLPL--GKFFQRYQQGGQLEDSSVLWPGAGT-------IRLEQDVFAALAGQGQ 234
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAK 303
+Y + T W QIK+ G +L S LYL+Q++LT P LA I G+VY+HP+AK
Sbjct: 235 IYVHLTDGIWSQIKSAGSALYASRLYLSQYQLTHPERLAKHT-PGGPRIRGNVYIHPTAK 293
Query: 304 IHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ 363
+ P+A +GPNVSI +G GVRL I+L G + E+ V ++IVGW S++GRW+RV+
Sbjct: 294 VAPSAVLGPNVSIGEGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVE 353
Query: 364 ----------------AEGDF-NAKL--GITILXXXXXXXXXXXXTNSIVLPNKTLNVSV 404
+E F + KL ITIL NSIVLP+K L+ S
Sbjct: 354 GTPNDPNPNDPRAHMDSESLFKDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSF 413
Query: 405 HQEIIL 410
+IIL
Sbjct: 414 TNQIIL 419
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q86HG0 | GMPPA_DICDI | 2, ., 7, ., 7, ., 1, 3 | 0.4211 | 0.9268 | 0.9223 | yes | no |
| Q922H4 | GMPPA_MOUSE | 2, ., 7, ., 7, ., 1, 3 | 0.4154 | 0.9536 | 0.9309 | yes | no |
| Q4I1Y5 | MPG1_GIBZE | 2, ., 7, ., 7, ., 1, 3 | 0.3225 | 0.8512 | 0.9587 | yes | no |
| O60064 | YBB2_SCHPO | 2, ., 7, ., 7, ., 1, 3 | 0.3865 | 0.9219 | 0.9130 | yes | no |
| Q7SXP8 | GMPAB_DANRE | 2, ., 7, ., 7, ., 1, 3 | 0.4439 | 0.9536 | 0.9265 | yes | no |
| Q6BN12 | MPG1_DEBHA | 2, ., 7, ., 7, ., 1, 3 | 0.3210 | 0.8560 | 0.9696 | yes | no |
| Q96IJ6 | GMPPA_HUMAN | 2, ., 7, ., 7, ., 1, 3 | 0.4131 | 0.9536 | 0.9309 | yes | no |
| Q70SJ2 | MPG1_KLULA | 2, ., 7, ., 7, ., 1, 3 | 0.3275 | 0.8585 | 0.9750 | yes | no |
| Q9Y725 | MPG11_CANGA | 2, ., 7, ., 7, ., 1, 3 | 0.3300 | 0.8585 | 0.9750 | yes | no |
| Q0VFM6 | GMPPA_XENTR | 2, ., 7, ., 7, ., 1, 3 | 0.4212 | 0.9414 | 0.9168 | yes | no |
| Q5XIC1 | GMPPA_RAT | 2, ., 7, ., 7, ., 1, 3 | 0.4178 | 0.9536 | 0.9309 | yes | no |
| P41940 | MPG1_YEAST | 2, ., 7, ., 7, ., 1, 3 | 0.3275 | 0.8585 | 0.9750 | yes | no |
| Q752H4 | MPG1_ASHGO | 2, ., 7, ., 7, ., 1, 3 | 0.3226 | 0.8585 | 0.9750 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 410 | |||
| cd06428 | 257 | cd06428, M1P_guanylylT_A_like_N, N-terminal domain | 1e-144 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 1e-64 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 8e-51 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 8e-49 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 1e-31 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 1e-30 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 9e-28 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 2e-25 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 7e-24 | |
| cd05824 | 80 | cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate | 1e-22 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 6e-22 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 8e-21 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 1e-19 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 3e-18 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 7e-16 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 1e-15 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 2e-15 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 3e-14 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 1e-13 | |
| cd02524 | 253 | cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr | 2e-13 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 1e-12 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 3e-12 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 3e-11 | |
| PRK00892 | 343 | PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco | 1e-10 | |
| cd04652 | 81 | cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, | 1e-09 | |
| COG1044 | 338 | COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | 2e-09 | |
| cd02523 | 229 | cd02523, PC_cytidylyltransferase, Phosphocholine c | 2e-09 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 1e-08 | |
| TIGR01853 | 324 | TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo | 1e-08 | |
| cd04197 | 217 | cd04197, eIF-2B_epsilon_N, The N-terminal domain o | 2e-08 | |
| TIGR01099 | 260 | TIGR01099, galU, UTP-glucose-1-phosphate uridylylt | 2e-08 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 9e-08 | |
| COG1210 | 291 | COG1210, GalU, UDP-glucose pyrophosphorylase [Cell | 9e-08 | |
| cd03352 | 205 | cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl | 1e-07 | |
| cd03351 | 254 | cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin | 2e-07 | |
| cd03353 | 193 | cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph | 2e-07 | |
| PRK05289 | 262 | PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr | 2e-07 | |
| TIGR01852 | 254 | TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei | 8e-07 | |
| cd03352 | 205 | cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl | 2e-06 | |
| cd03351 | 254 | cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin | 2e-06 | |
| COG1043 | 260 | COG1043, LpxA, Acyl-[acyl carrier protein] | 2e-06 | |
| PRK12461 | 255 | PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr | 4e-06 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 5e-06 | |
| pfam12804 | 178 | pfam12804, NTP_transf_3, MobA-like NTP transferase | 5e-06 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 7e-06 | |
| TIGR01852 | 254 | TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei | 1e-05 | |
| cd03360 | 197 | cd03360, LbH_AT_putative, Putative Acyltransferase | 4e-05 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 4e-05 | |
| cd05636 | 163 | cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho | 5e-05 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 6e-05 | |
| PRK14354 | 458 | PRK14354, glmU, bifunctional N-acetylglucosamine-1 | 7e-05 | |
| cd00208 | 78 | cd00208, LbetaH, Left-handed parallel beta-Helix ( | 7e-05 | |
| COG1044 | 338 | COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | 1e-04 | |
| PRK14355 | 459 | PRK14355, glmU, bifunctional N-acetylglucosamine-1 | 1e-04 | |
| TIGR03570 | 193 | TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia | 1e-04 | |
| PRK09451 | 456 | PRK09451, glmU, bifunctional N-acetylglucosamine-1 | 2e-04 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 2e-04 | |
| COG1043 | 260 | COG1043, LpxA, Acyl-[acyl carrier protein] | 3e-04 | |
| PRK14355 | 459 | PRK14355, glmU, bifunctional N-acetylglucosamine-1 | 4e-04 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 4e-04 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 4e-04 | |
| cd02516 | 218 | cd02516, CDP-ME_synthetase, CDP-ME synthetase is i | 5e-04 | |
| cd04645 | 153 | cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra | 5e-04 | |
| pfam00132 | 36 | pfam00132, Hexapep, Bacterial transferase hexapept | 7e-04 | |
| COG4750 | 231 | COG4750, LicC, CTP:phosphocholine cytidylyltransfe | 7e-04 | |
| cd00710 | 167 | cd00710, LbH_gamma_CA, Gamma carbonic anhydrases ( | 7e-04 | |
| cd03356 | 79 | cd03356, LbH_G1P_AT_C_like, Left-handed parallel b | 0.001 | |
| PRK09451 | 456 | PRK09451, glmU, bifunctional N-acetylglucosamine-1 | 0.001 | |
| PRK14358 | 481 | PRK14358, glmU, bifunctional N-acetylglucosamine-1 | 0.001 | |
| TIGR02623 | 254 | TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti | 0.002 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 0.002 | |
| cd04745 | 155 | cd04745, LbH_paaY_like, paaY-like: This group is c | 0.002 | |
| COG2266 | 177 | COG2266, COG2266, GTP:adenosylcobinamide-phosphate | 0.002 | |
| pfam00132 | 36 | pfam00132, Hexapep, Bacterial transferase hexapept | 0.003 | |
| cd00208 | 78 | cd00208, LbetaH, Left-handed parallel beta-Helix ( | 0.004 | |
| cd04183 | 231 | cd04183, GT2_BcE_like, GT2_BcbE_like is likely inv | 0.004 |
| >gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 410 bits (1055), Expect = e-144
Identities = 137/265 (51%), Positives = 179/265 (67%), Gaps = 14/265 (5%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVGFYEERE 64
AVI+VGGP KGTRFRPLSL++PKPLFP+ G+PM+HH I AC K + L+GFY E
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESV 60
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
F+ ++S E +P+RYL+E KP G+AG LY+FRD I+ NPS F+LN DVCC FPL
Sbjct: 61 FSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQ 120
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
E+L+ H+ +G GTIL + S E AS +G +V DP T E+LHY EKPETFVSDLINCGVY
Sbjct: 121 ELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVY 180
Query: 185 VFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQL 244
+F+P+IF+ I+ R+ L R + +RL+QD+L+PLAG +L
Sbjct: 181 LFSPEIFDTIKKAFQSRQQEAQLG--------DDNNREGRAEVIRLEQDVLTPLAGSGKL 232
Query: 245 YTYETMDFWEQIKTPGMSLKCSGLY 269
Y Y+T DFW QIKT G ++ + LY
Sbjct: 233 YVYKTDDFWSQIKTAGSAIYANRLY 257
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 1e-64
Identities = 115/392 (29%), Positives = 179/392 (45%), Gaps = 50/392 (12%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYL-VGFYEERE 64
AVI+ GG GTR RPL+ + PKPL P+ G+P++ + + A I L VG+ E+
Sbjct: 4 AVILAGG--YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQI 61
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
+ L + + Y+ E +P G+AGAL N DL+ D+ +LN DV L
Sbjct: 62 EEYF--GDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDD---FLVLNGDVLTDLDLS 116
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKP--ETFVSDLINCG 182
E+L+ H+ G + TI + +V S+FG + D ++ + EKP E S+LIN G
Sbjct: 117 ELLEFHKKKGALATIALTRV--LDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAG 174
Query: 183 VYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242
+Y+F P++F+ I+ +R D E ++L LA K
Sbjct: 175 IYIFDPEVFDYIE--KGERFDFEE--------------------------ELLPALAAKG 206
Query: 243 Q-LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG-DGTKNATIIGDVYVHP 300
+ +Y Y +W I TP L+ + L L + + ++A IIG V + P
Sbjct: 207 EDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGP 266
Query: 301 SAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGR-- 358
AKI P A IGP I IG GV + + II+D V I + + ++I+G IG
Sbjct: 267 GAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL 326
Query: 359 -WSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389
V + G+ + +V E+
Sbjct: 327 IIGDVVIGINSEILPGVVVGPGSVVESGEIED 358
|
Length = 358 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 8e-51
Identities = 94/265 (35%), Positives = 133/265 (50%), Gaps = 39/265 (14%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA-----CKRIYLVGFYEEREF 65
A+I+VGG GTR RPL+L +PKPL +PM+ H I A K I L Y +
Sbjct: 3 ALILVGG--YGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDM 60
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
++ +L I + + E +P G+AG L RDL+ +D+ F+LN DV C FPL E
Sbjct: 61 VPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDDD-EPFFVLNSDVICDFPLAE 119
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+LD H+ +G GTILV KV E S++G +V D +T + + EKP+ FV + IN G+Y+
Sbjct: 120 LLDFHKKHGAEGTILVTKV--EDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYI 177
Query: 186 FTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245
P + + I LR S ++++I +A + QLY
Sbjct: 178 LNPSVLDRIP-----------LRPTS------------------IEKEIFPKMASEGQLY 208
Query: 246 TYETMDFWEQIKTPGMSLKCSGLYL 270
YE FW I P LK LYL
Sbjct: 209 AYELPGFWMDIGQPKDFLKGMSLYL 233
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 8e-49
Identities = 74/251 (29%), Positives = 111/251 (44%), Gaps = 40/251 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREF 65
AVI+ G KGTR RPL+ PKPL P+ G+P++ + I R I LV Y +
Sbjct: 1 AVILAAG--KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQI 58
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
Y S + + Y+ +++P G+AGA+ N D + +D ++N DV L E
Sbjct: 59 EEYFGDGSK-FGVNIEYVVQEEPLGTAGAVRNAEDFLGDD---DFLVVNGDVLTDLDLSE 114
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+L HR G TI V +V E S++G + D D + + EKP S+L N G+Y+
Sbjct: 115 LLRFHREKGADATIAVKEV--EDPSRYGVVELD-DDGRVTRFVEKPTLPESNLANAGIYI 171
Query: 186 FTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245
F P+I + I E L R D + L + ++Y
Sbjct: 172 FEPEILDYI---------PEILPRGEDEL-----------------TDAIPLLIEEGKVY 205
Query: 246 TYETMDFWEQI 256
Y +W I
Sbjct: 206 GYPVDGYWLDI 216
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 1e-31
Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 22/233 (9%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFP-LGGQPMVHHPISAC------KRIYLVGFYEER 63
A+I+ GG GTR PL+ + KPL P L PM+ + +S + I +
Sbjct: 2 AIILAGG--SGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRF 59
Query: 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
A + S + + V Y + +P G+A A+ D + +D+P + +L D
Sbjct: 60 LVAEQLGDGS-KFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDF 118
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFV-SDLINCG 182
E + R GT+ V E + +G + D + ++ + EKP+ S+ + G
Sbjct: 119 EEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFD-ENGRVIRFVEKPDLPKASNYASMG 177
Query: 183 VYVFTPDIFNAIQGVSSQRKDRENLRRVSSF--EALQSATR--NLTTDFVRLD 231
+Y F +F + K + L R +A+ +A +L F+
Sbjct: 178 IYFFNSGVFLFLA------KYLKELARGEDEITDAIPAALEDGDLDLAFLFRG 224
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 93/349 (26%), Positives = 149/349 (42%), Gaps = 61/349 (17%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLVGFYEEREF 65
AVI+ G KGTR RPL+ PKP+ P+ G+P++ H I A + V Y + +
Sbjct: 3 AVILAAG--KGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKV 60
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
Y S +P+ Y+ +++ G+A AL + ++ + +D +LN DV L E
Sbjct: 61 REYFGDGS-RGGVPIEYVVQEEQLGTADALGSAKEYV-DDE---FLVLNGDVLLDSDLLE 115
Query: 126 -MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
++ A I V++V + S +G + D + EKPE S+LIN G+Y
Sbjct: 116 RLIRAEAP-----AIAVVEV--DDPSDYGVVET--DGGRVTGIVEKPENPPSNLINAGIY 166
Query: 185 VFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
+F+P+IF ++ S R + E LT D L L + +
Sbjct: 167 LFSPEIFELLEKTKLSPRGEYE-----------------LT--------DALQLLIDEGK 201
Query: 244 LYTYETMDFWEQIKTPGMSLKCSGLYLAQFR------------LTSPNLLASGDGTKNAT 291
+ E FW + P L + L + P ++ G ++ T
Sbjct: 202 VKAVELDGFWLDVGRPWDLLDANEALLDNLEPRIEGTVEENVTIKGPVVIGEGAVIRSGT 261
Query: 292 -IIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEI 339
I G VY+ + I P A I P I N IG V + + II++G +I
Sbjct: 262 YIEGPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNSIIMEGTKI 310
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 9e-28
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 15/189 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA-----CKRIYLVGFYEEREF 65
+I+ GG KGTR RPL+ PK L P+ G+P++ + I + I +V E
Sbjct: 3 GLILAGG--KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEI 60
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ S + + Y+ +++P G A A+ RD + D P ++L D +
Sbjct: 61 KEALGDGSR-FGVRITYILQEEPLGLAHAVLAARDFL-GDEPFVVYL--GDNLIQEGISP 116
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
++ +IL+ +V E +FG VA D ++ EKP+ S+L GVY
Sbjct: 117 LVRDFLEEDADASILLAEV--EDPRRFG--VAVVDDGRIVRLVEKPKEPPSNLALVGVYA 172
Query: 186 FTPDIFNAI 194
FTP IF+AI
Sbjct: 173 FTPAIFDAI 181
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-25
Identities = 65/247 (26%), Positives = 100/247 (40%), Gaps = 49/247 (19%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-- 62
AVI+ GG GTR R + ++PKPL P+ G+P + + + R + VG+ E
Sbjct: 1 AVILAGG--LGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQI 58
Query: 63 REFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP 122
E+ I + Y+ E +P G+ GA+ N + ED +LN D
Sbjct: 59 EEYFGD----GYRGGIRIYYVIEPEPLGTGGAIKNALPKLPED---QFLVLNGDTYFDVD 111
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCG 182
L +L A R G T+ + +V AS++G + D D ++ + EK LIN G
Sbjct: 112 LLALLAALRASGADATMALRRV--PDASRYGNVTVDGD-GRVIAFVEKGPGAAPGLINGG 168
Query: 183 VYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242
VY+ +I I S EA D+L L +
Sbjct: 169 VYLLRKEILAEIP------------ADAFSLEA-----------------DVLPALVKRG 199
Query: 243 QLYTYET 249
+LY +E
Sbjct: 200 RLYGFEV 206
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 7e-24
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 30/195 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFALYVS 70
VIM GG KGTR RPL+ N PKP+ +GG+P++ I R GF R F + V+
Sbjct: 1 VVIMAGG--KGTRLRPLTENTPKPMLKVGGKPILETII---DRFIAQGF---RNFYISVN 52
Query: 71 SISNELR----------IPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS 120
++ + + + Y+REDKP G+AGAL L+ E ++N D+ +
Sbjct: 53 YLAEMIEDYFGDGSKFGVNISYVREDKPLGTAGAL----SLLPEKPTDPFLVMNGDILTN 108
Query: 121 FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPE-TFVSDLI 179
+LD H+ T+ V + + +G V + + + EKP +F L+
Sbjct: 109 LNYEHLLDFHKENNADATVCVREYEVQVP--YG--VVETEGGRITSIEEKPTHSF---LV 161
Query: 180 NCGVYVFTPDIFNAI 194
N G+YV P++ + I
Sbjct: 162 NAGIYVLEPEVLDLI 176
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 1e-22
Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 9/88 (10%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIG 357
+ PSAKI TAKIGPNV I N IG GVRL C+IL + +++ V ++IVGW S++G
Sbjct: 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVG 61
Query: 358 RWSRVQAEGDFNAKLGITILGEAVGVED 385
RW+R++ +T+LG+ V ++D
Sbjct: 62 RWTRLE---------NVTVLGDDVTIKD 80
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 6e-22
Identities = 83/385 (21%), Positives = 144/385 (37%), Gaps = 83/385 (21%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYEERE 64
A+++ GG G+R PL+ KP P GG+ ++ P+S C +RI ++ Y+
Sbjct: 1 AMVLAGGR--GSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHS 58
Query: 65 FALYVSS------ISNELRIPVR-YLREDKPH---GSAGALYNFRDLIMEDNPSHIFLLN 114
++ + + RE G+A A+Y DLI + +P ++ +L+
Sbjct: 59 LNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILS 118
Query: 115 CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKP--- 171
D +MLD H G TI I V + AS+FG + D D ++ + EKP
Sbjct: 119 GDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDED-GRIVDFEEKPANP 177
Query: 172 ETFVSD----LINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT-- 225
+ L + G+Y+F D++ L E L+ + +
Sbjct: 178 PSIPGMPDFALASMGIYIF----------------DKDVL-----KELLEEDADDPESSH 216
Query: 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKT---------------PGMSL--KCSGL 268
DF + DI+ + + Y +W + T P L + +
Sbjct: 217 DFGK---DIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPI 273
Query: 269 YLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVS---ISANARIGAG 325
Y L + S ++ + + G VS + RIG+G
Sbjct: 274 YTYNEFLPPAKFVDSDAQVVDSLVSEGCIIS-----------GATVSHSVLGIRVRIGSG 322
Query: 326 VRLISCIILDGVEIMENAVVTNAIV 350
+ +I+ V I AV+ NAI+
Sbjct: 323 STVEDSVIMGDVGIGRGAVIRNAII 347
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 8e-21
Identities = 89/380 (23%), Positives = 153/380 (40%), Gaps = 69/380 (18%)
Query: 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFY 60
V+A+I+ GG +G+R PL+ + KP P GG+ ++ +S C +RI ++ Y
Sbjct: 4 KNVLAIILAGG--RGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQY 61
Query: 61 EEREFALYVSS--------ISNELRIPVRYLREDKPH---GSAGALYNFRDLIMEDNPSH 109
+ ++ + + I RE G+A A+Y +I +P +
Sbjct: 62 KSHSLNDHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEY 121
Query: 110 IFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTE 169
+ +L+ D +MLD H G T+ V +V E AS+FG + D + ++ + E
Sbjct: 122 VLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVD-ENGRIIEFVE 180
Query: 170 KP--ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT-- 225
KP + L + G+Y+F D+ E L+ ++ +
Sbjct: 181 KPADGPPSNSLASMGIYIFNTDLL---------------------KELLEEDAKDPNSSH 219
Query: 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGD 285
DF +DI+ L + ++Y YE +W + T + Y A L SP +
Sbjct: 220 DF---GKDIIPKLLERGKVYAYEFSGYWRDVGT----ID--SYYEANMDLLSPQPELNLY 270
Query: 286 GTKNATIIGDVYVHPSAKIHPTAK-----------IGPNVS---ISANARIGAGVRLISC 331
+N I P AK ++ I V + RIG G + +
Sbjct: 271 D-RNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISGTVENSVLFRGVRIGKGSVIENS 329
Query: 332 IILDGVEIMENAVVTNAIVG 351
+I+ VEI E AV+ AI+
Sbjct: 330 VIMPDVEIGEGAVLRRAIID 349
|
Length = 393 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-19
Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 47/221 (21%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEERE 64
AV++ G G+RF PL+ +IPK L P+ P++ + + ++ + + +
Sbjct: 3 AVVLADG--FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60
Query: 65 FALYVSSISNELRIPVR----YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS 120
+ S + L + + G A L + R LI S LL+CD+ +
Sbjct: 61 IEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLI----RSDFLLLSCDLVSN 116
Query: 121 FPLPEMLDA----HRNYGGMGTILVIKVSAES--ASQFGE----LVADPDTNELL--HYT 168
PL E+L+ +N +++ S S+ E + D T LL HY
Sbjct: 117 IPLSELLEERRKKDKNA-IATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYE 175
Query: 169 EKPE------------------TFVSDLINCGVYVFTPDIF 191
E + T +DL++C +Y+ +PD+
Sbjct: 176 EDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 102/417 (24%), Positives = 172/417 (41%), Gaps = 75/417 (17%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR--IYLVGF---YE 61
+++A+I+ GG +GTR L+ NI KP P GG+ ++ +S C I VG Y+
Sbjct: 3 EMLAMILAGG--QGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQ 60
Query: 62 EREFALYVSS--------ISNELRIPVRYLREDKPH---GSAGALYNFRDLIMEDNPSHI 110
E ++ I+ + I Y + G+A A+Y D I + +P ++
Sbjct: 61 PLELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYV 120
Query: 111 FLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEK 170
+L+ D +MLD H+ TI VI+V E AS+FG + D + ++ + EK
Sbjct: 121 LILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDEN-MRIVEFEEK 179
Query: 171 PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT--DFV 228
P+ S+L + G+Y+F L+ E L +N + DF
Sbjct: 180 PKNPKSNLASMGIYIFNWKR----------------LK-----EYLIEDEKNPNSSHDF- 217
Query: 229 RLDQDIL-SPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSP-NLLASGDG 286
++++ L ++LY Y +W+ + T L+ A L P N L D
Sbjct: 218 --GKNVIPLYLEEGEKLYAYPFKGYWKDVGT------IESLWEANMELLRPENPLNLFD- 268
Query: 287 TKNATIIGDVYVHPSAKIHPTAKI-------GPNVS-------ISANARIGAGVRLISCI 332
+N I P I AK+ G V + ++G G + +
Sbjct: 269 -RNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSV 327
Query: 333 ILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389
I+ G +I EN V+ AI+G + IG + + IT++GE + V+
Sbjct: 328 IMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKE-----VITVIGENEVIGVGTVI 379
|
Length = 380 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 7e-16
Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 49/221 (22%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYE--------- 61
AVI+ GG G+R PL+ NIPK L P+ +PM+ +P+ ++ GF +
Sbjct: 3 AVILAGG--GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA---GFEDVIVVVPEEE 57
Query: 62 EREFALYVSSISNELRIPVRYLRE--DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119
+ E + Y+ S L+ + + D+ G+A +L + R I +D +L+CD+
Sbjct: 58 QAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKIKKD----FLVLSCDLIT 113
Query: 120 SFPLPEMLDAHRNYGGMGTIL-------VIKVSAESASQFGE---LVADPDTNELLHYTE 169
PL E++D HR++ T+L + + S+ + ++ + + L +
Sbjct: 114 DLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADERDVIGLDEKTQRLLFIT 173
Query: 170 KPE-------------------TFVSDLINCGVYVFTPDIF 191
E T + L++ VY+F +
Sbjct: 174 SEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 1e-15
Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 16/202 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEER-E 64
VI+ GG GTR RPL+ +PK L P+ +PM+++P+ I +V E++
Sbjct: 3 GVILAGG--SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
F + S + + + Y + +P G A A+ D + +D+ L D L
Sbjct: 61 FKELLGDGS-DFGVDITYAVQPEPDGLAHAVLIAEDFVGDDD---FVLYLGDNIFQDGLS 116
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
E+L+ G TIL+ +V + S++G + D D +++ EKP+ S+L G+Y
Sbjct: 117 ELLEHFAEEGSGATILLYEV--DDPSRYGVVEFDED-GKVIGLEEKPKEPKSNLAVTGLY 173
Query: 185 VFTPDIFNAIQGVS-SQRKDRE 205
+ P +F AI+ + S R + E
Sbjct: 174 FYDPSVFEAIKQIKPSARGELE 195
|
Length = 286 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 91/371 (24%), Positives = 141/371 (38%), Gaps = 66/371 (17%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI------YLVGFYEERE 64
A+I+ G KGTR RPL+ PK L P+ +P++ + I +VG E
Sbjct: 2 ALILAAG--KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEE 59
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
V + Y+ + +P G A A+Y RD + D+ ++L D +
Sbjct: 60 IKEIVGEGER-FGAKITYIVQGEPLGLAHAVYTARDFLG-DDDFVVYL--GDNLIQDGIS 115
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
+ + IL+ KV + FG V + D +L EKP+ S+L G+Y
Sbjct: 116 RFVKSFEEKDYDALILLTKV--RDPTAFGVAVLE-DGKRILKLVEKPKEPPSNLAVVGLY 172
Query: 185 VFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243
+F P IF AI+ + S R + E +T D + L K
Sbjct: 173 MFRPLIFEAIKNIKPSWRGELE-----------------IT--------DAIQWLIEKGY 207
Query: 244 LYTYETMD-FWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSA 302
+ +W+ P L + L L + + D +K I G V V A
Sbjct: 208 KVGGSKVTGWWKDTGKPEDLLDANRLILDE---VEREVQGVDDESK---IRGRVVVGEGA 261
Query: 303 KI-----HPTAKIGPNVSISANARIGA------GVRLIS-----CIILDGVEIMEN-AVV 345
KI A IG + I N+ IG GV + I+LD I A +
Sbjct: 262 KIVNSVIRGPAVIGEDCIIE-NSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARI 320
Query: 346 TNAIVGWKSSI 356
++++G K I
Sbjct: 321 VDSVIGKKVRI 331
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 91/416 (21%), Positives = 160/416 (38%), Gaps = 108/416 (25%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLV-GFYE 61
+ AVI+ G KGTR + ++PK L P+ G+PM+ H I A + I +V G
Sbjct: 2 SLSAVILAAG--KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGA 56
Query: 62 EREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF 121
E+ +++ R V ++ +++ G+ A+ + +D + +L DV
Sbjct: 57 EQ----VREALAE--RDDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDV---- 106
Query: 122 PL------PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEK----P 171
PL E+L AH +G T+L + + +G +V D + E+ E+
Sbjct: 107 PLITAETLEELLAAHPAHGAAATVLT--AELDDPTGYGRIVRDGN-GEVTAIVEEKDASE 163
Query: 172 ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRN-------LT 224
E IN G+Y F D L AL + N LT
Sbjct: 164 EEKQIKEINTGIYAF----------------DGAAL-----LRALPKLSNNNAQGEYYLT 202
Query: 225 TDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQF-----RLTSP 278
D+++ + +++ D E G++ + + LA+ R +
Sbjct: 203 --------DVIAIARNEGEKVRAVHVDDEEE---VLGVNDR---VQLAEAERIMQRRIAE 248
Query: 279 NLLASGDGTKNATII--GDVYVHPSAKIHPTAKIGPNV------SISANARIGAGVRLIS 330
L+ +G T+I Y+ +I I PNV I N IG G +
Sbjct: 249 KLMLAG-----VTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKD 303
Query: 331 CIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAE---------GDF----NAKLG 373
+I D I +V+ + VG +++G ++R++ G+F A +G
Sbjct: 304 SVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIG 359
|
Length = 460 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 1e-13
Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 23/185 (12%)
Query: 21 GTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREF--------ALYVSSI 72
GTR RPL+ PKPL P+ G+P++ H + G R + +
Sbjct: 10 GTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAA---AGI---RRIVVNTHHLADQIEAHL 63
Query: 73 SNELR-IPVRYLREDK-PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAH 130
+ + + E + G + L+ ++ ++N D+ L +L H
Sbjct: 64 GDSRFGLRITISDEPDELLETGGGIKKALPLLGDEP---FLVVNGDILWDGDLAPLLLLH 120
Query: 131 RNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDI 190
+L+ V + G+ D D V+ G+ + +P++
Sbjct: 121 AWRMDALLLLLPLVRNPGHNGVGDFSLDAD----GRLRRGGGGAVAPFTFTGIQILSPEL 176
Query: 191 FNAIQ 195
F I
Sbjct: 177 FAGIP 181
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 61/288 (21%), Positives = 101/288 (35%), Gaps = 94/288 (32%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLV-GF---------- 59
VI+ GG GTR + PKP+ +GG+P++ H + +IY G
Sbjct: 1 VVILAGG--LGTRLSEETELKPKPMVEIGGRPILWHIM----KIYSHYGHNDFILCLGYK 54
Query: 60 ----------YEEREFALYVSSISNELRIPVRYLREDKPHGSA----------------- 92
Y + + +N + + H S
Sbjct: 55 GHVIKEYFLNYFLHNSDVTIDLGTNRIEL----------HNSDIEDWKVTLVDTGLNTMT 104
Query: 93 -GALYNFRDLIMEDNPSHIFLLN-CDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESAS 150
G L R + +D F+L D + +++ HR++G + T+ +
Sbjct: 105 GGRLKRVRRYLGDDET---FMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH----PPG 157
Query: 151 QFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRV 210
+FGEL D D ++ +TEKP+ IN G +V P++F+ I G
Sbjct: 158 RFGELDLDDD-GQVTSFTEKPQG-DGGWINGGFFVLEPEVFDYIDGDD------------ 203
Query: 211 SSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKT 258
T F R + L LA +L Y+ FW+ + T
Sbjct: 204 --------------TVFER---EPLERLAKDGELMAYKHTGFWQCMDT 234
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 35/211 (16%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA-----CKRIYLVGFYEEREF 65
AVI+ G KGTR + S ++PK L PL G+PM+ H + A RI +V + +
Sbjct: 1 AVILAAG--KGTRMK--S-DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQV 55
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL-- 123
+++ V ++ +++ G+ A+ + + + +L DV PL
Sbjct: 56 KKALAN------PNVEFVLQEEQLGTGHAVKQALPALKDFE-GDVLVLYGDV----PLIT 104
Query: 124 PE----MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTE----KPETFV 175
PE +L+AHR G T+L + E + +G ++ D ++L E E
Sbjct: 105 PETLQRLLEAHREAGADVTVLTAE--LEDPTGYGRIIRD-GNGKVLRIVEEKDATEEEKA 161
Query: 176 SDLINCGVYVF-TPDIFNAIQGVSSQRKDRE 205
+N G+Y F +F A+ +++ E
Sbjct: 162 IREVNAGIYAFDAEFLFEALPKLTNNNAQGE 192
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-12
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSI 356
+ S I A I +V I N RIG GV + + I++D V I N+V+ ++I+G + I
Sbjct: 1 LIGESTVIGENAIIKNSV-IGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVI 59
Query: 357 GRWSRVQAEGDFNAKLGITILGEAVGVED 385
G RV + + I+G+ V VED
Sbjct: 60 GENVRV---------VNLCIIGDDVVVED 79
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 3e-11
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 45/221 (20%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI-----SACKRIYLVG------- 58
AVI G GTRF P + IPK + P+ +P++ + + + + I +V
Sbjct: 3 AVIPAAG--LGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAI 60
Query: 59 --------FYEER-------EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103
EE + V IS+ I Y+R+ +P G A+ + I
Sbjct: 61 EDHFDRSYELEETLEKKGKTDLLEEVRIISDLANI--HYVRQKEPLGLGHAVLCAKPFI- 117
Query: 104 EDNPSHIF--LLNCDVCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159
D P F LL D+ S L ++++A+ G I V +V E S++G + +
Sbjct: 118 GDEP---FAVLLGDDLIDSKEPCLKQLIEAYEKTGA-SVIAVEEVPPEDVSKYGIVKGEK 173
Query: 160 DTNELLHYT---EKP--ETFVSDLINCGVYVFTPDIFNAIQ 195
++ EKP E S+L G YV TPDIF+ ++
Sbjct: 174 IDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILE 214
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV-TNAIVGWKSSI 356
+HPSA I P+AKIG VSI NA IGAGV I DGV I AV+ +G +
Sbjct: 103 IHPSAVIDPSAKIGEGVSIGPNAVIGAGVV-----IGDGVVIGAGAVIGDGVKIGADCRL 157
Query: 357 GRWSRV 362
+ V
Sbjct: 158 --HANV 161
|
Length = 343 |
| >gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-09
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 304 IHPTAKIGPNVSI-----SANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGR 358
+ ++G SI AN +IG V++ +C+I+D V I + + N I+G + IG
Sbjct: 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGE 61
Query: 359 WSRVQ 363
+++
Sbjct: 62 KCKLK 66
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81 |
| >gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL-ISCIILDGVEIMENAVV--- 345
+HP+A I PTA IG NVSI N IGAGV + + +I G I EN +
Sbjct: 94 RPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDG 153
Query: 346 ----TNAIVGWKSSIGRWSRVQA 364
N + IG + +
Sbjct: 154 TVIHPNVTIYHNVVIGNNVIIHS 176
|
Length = 338 |
| >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-09
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 34/197 (17%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLV-GFYEE-- 62
A+I+ G +G+R RPL+ + PK L + G+P++ I K I +V G+ +E
Sbjct: 1 AIILAAG--RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQI 58
Query: 63 REFA---LYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119
E + + N Y + +LY RD + ED LL DV
Sbjct: 59 EELLKKYPNIKFVYNP-----DYAET----NNIYSLYLARDFLDED----FLLLEGDV-- 103
Query: 120 SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDL- 178
P +L+ + ILV K + E ++ + + D L + ++
Sbjct: 104 -VFDPSILERLLSSPADNAILVDKKTKEWEDEYVKDLDDAGV---LLGIISKAKNLEEIQ 159
Query: 179 -INCGVYVFTPDIFNAI 194
G+ F+P+ + +
Sbjct: 160 GEYVGISKFSPEDADRL 176
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 90/408 (22%), Positives = 156/408 (38%), Gaps = 109/408 (26%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYE 61
KV+A+++ GG +G R PL+ + KP P GG ++ +S RIY++ Y+
Sbjct: 5 KVLAIVLAGG--EGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYK 62
Query: 62 E-----------REFAL---YVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNP 107
R L Y++ + + R+ R+ GSA A+Y +LI +++P
Sbjct: 63 SHSLDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYL-----GSADAIYQSLNLIEDEDP 117
Query: 108 SHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHY 167
++ + D +M+D H G T+ I+V E AS FG + DPD + +
Sbjct: 118 DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPD-GRIRGF 176
Query: 168 TEKP-----------ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEAL 216
EKP E S G YVFT D +AL
Sbjct: 177 LEKPADPPGLPDDPDEALAS----MGNYVFTTDAL---------------------VDAL 211
Query: 217 Q--SATRNLTTDFVRLDQDILSPLAGKKQLYTYE---------------------TMD-F 252
+ +A + + D DI+ L + + Y Y+ T+D +
Sbjct: 212 RRDAADEDSSHDM---GGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAY 268
Query: 253 WEQ-----IKTPGMSL--KCSGLYLAQFRLTSPNLLASGDGTKNAT--IIGD-VYVHPSA 302
++ P +L + +Y + L + G +A ++ + A
Sbjct: 269 YDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GA 327
Query: 303 KIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIV 350
+ + + PNV + +G + +++DGV I AVV AI+
Sbjct: 328 TVRNSV-LSPNV------VVESGAEVEDSVLMDGVRIGRGAVVRRAIL 368
|
Length = 407 |
| >gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVV-TN 347
A I V PSAKI IGPNV I A IG V + +I D V I + + + N
Sbjct: 92 AGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPN 151
Query: 348 AIVGWKSSIGRWSRVQA 364
++ + +G+ + +
Sbjct: 152 VVIYERVQLGKNVIIHS 168
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324 |
| >gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 66/232 (28%)
Query: 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR--IYLVGFYEEREFA 66
+ AV++ + RFRPL+ P+ L PL P++ + + + E
Sbjct: 1 LQAVVL--ADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVE--------EVF 50
Query: 67 LYVSSISNELRIPVRYLREDKPHG--------------SAG-ALYNFRDLIMEDNP---- 107
++ S S++++ + + KP S G AL RDL D
Sbjct: 51 VFCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDAL---RDL---DAKGLIR 104
Query: 108 SHIFLLNCDVCCSFPLPEMLDAHR-----NYGGMGTILVIKVSAESASQFGE----LVAD 158
L++ DV + L E+L+ H+ + + T+++ + S ++ + D
Sbjct: 105 GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVD 164
Query: 159 PDTNELLHYTEKP----ETFVS----------------DLINCGVYVFTPDI 190
P T+ LLHY E P + DL++C + + +PD+
Sbjct: 165 PKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDV 216
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217 |
| >gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 59/220 (26%), Positives = 90/220 (40%), Gaps = 45/220 (20%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI-----SACKRIYLVGFYEER-- 63
AVI G GTRF P + IPK + P+ +P++ + + + + I +V +R
Sbjct: 3 AVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRSI 60
Query: 64 ----------EFAL----------YVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103
E L V SI + Y+R+ + G A+ +
Sbjct: 61 EDHFDTSYELEHQLEKTNKEELLKEVRSIIP--LATIFYVRQKEQKGLGHAVLCAEPFVG 118
Query: 104 EDNPSHIFLLNCDVCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161
++ +L D+C S L +M+D + YG I V +V E S++G V D +
Sbjct: 119 DE--PFAVILGDDICVSEEPVLKQMIDLYEKYGC-SIIAVEEVPKEEVSKYG--VIDGEG 173
Query: 162 NELLHY-----TEKP--ETFVSDLINCGVYVFTPDIFNAI 194
E Y EKP E S+L G YV TPDIF +
Sbjct: 174 VEEGVYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFELL 213
|
Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 260 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 9e-08
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 31/210 (14%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYE------ERE 64
+I+ GG GTR PL+ + K L P+ +PM+++P+S L G E +
Sbjct: 3 GIILAGG--SGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLM---LAGIREILIISTPED 57
Query: 65 FALYVSSISN--ELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS-----HIFLLNCDV 117
L+ + + +L I + Y + KP G A A + I +D +IF
Sbjct: 58 LPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQ--- 114
Query: 118 CCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-ELLHYTEKPETFVS 176
L +L T+ +V+ ++G V + D N +L EKP+ S
Sbjct: 115 ----GLSPILQRAAAQKEGATVFGYEVN--DPERYG--VVEFDENGRVLSIEEKPKKPKS 166
Query: 177 DLINCGVYVFTPDIFNAIQGVS-SQRKDRE 205
+ G+Y + D+F + + S R + E
Sbjct: 167 NYAVTGLYFYDNDVFEIAKQLKPSARGELE 196
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 9e-08
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 46/221 (20%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI-----SACKRIYLV-------- 57
AVI G GTRF P + IPK + P+ +P++ + + + + I +V
Sbjct: 7 AVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAI 64
Query: 58 -----------GFYEER---EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103
E+R E V SI + I ++R+ +P G A+ + +
Sbjct: 65 EDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTI--SFVRQKEPLGLGHAVLCAKPFV- 121
Query: 104 EDNPSHIFLLNCDVCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161
+ LL D+ S L +M++ + GG I V +V E S++G V DP
Sbjct: 122 -GDEPFAVLLPDDLVDSEKPCLKQMIELYEETGG-SVIGVEEVPPEDVSKYG--VIDPGE 177
Query: 162 ---NELLHYT---EKP--ETFVSDLINCGVYVFTPDIFNAI 194
+ EKP E S+L G YV TP+IF+ +
Sbjct: 178 PVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDIL 218
|
Length = 291 |
| >gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-07
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-------CIILDGVEIM 340
+N +I + + I IGP V I IG + CII D V I
Sbjct: 6 ENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIH 65
Query: 341 ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAV 381
AV+ + G+ G W ++ +LG I+G+ V
Sbjct: 66 SGAVIGSDGFGFAPDGGGWVKI-------PQLGGVIIGDDV 99
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205 |
| >gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIG 357
+HP+A + P AKIG NV I IG V I DG I + V+ G ++IG
Sbjct: 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVE-----IGDGTVIGSHVVID----GP-TTIG 51
Query: 358 RWSRV 362
+ +R+
Sbjct: 52 KNNRI 56
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254 |
| >gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-07
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNA 348
I GDV + I P + I + IG + I DGV I ++V+ A
Sbjct: 9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGA 68
Query: 349 IVGWKSSIGRWSRVQAE---------GDF----NAKLG 373
++G +++G ++ ++ G+F + +G
Sbjct: 69 VIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIG 106
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193 |
| >gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 2e-07
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 298 VHPSAKIHPTAKIGPNVS------ISANARIGAGVRLIS-CIILDGVEIMENAVV-TNAI 349
+HP+A + P AKIG NV I N IG G + S +I I +N + A
Sbjct: 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFAS 64
Query: 350 VG 351
+G
Sbjct: 65 IG 66
|
Length = 262 |
| >gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-07
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIG 357
+HP+A I P A+IG NV I +G GV+ I DGVE+ + V+ ++IG
Sbjct: 1 IHPTAIIEPGAEIGENVEIGPFCIVGPGVK-----IGDGVELKSHVVILGH-----TTIG 50
Query: 358 RWSRV 362
+R+
Sbjct: 51 EGTRI 55
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254 |
| >gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-N 347
+A I +V + P+A I IG V I IG GV I D I N +
Sbjct: 1 SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVV-----IGDDCVIHPNVTIYEG 55
Query: 348 AIVG 351
I+G
Sbjct: 56 CIIG 59
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205 |
| >gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVV-TNAIVG 351
V P AKI +IGP I N IG G + S +I I +N + A +G
Sbjct: 7 IVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIG 63
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254 |
| >gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIG 357
+HP+A I P A+IG +V I IG V I DG + + VV ++IG
Sbjct: 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVE-----IGDGTVLKSHVVVEGH-----TTIG 55
Query: 358 RWSRV 362
R +R+
Sbjct: 56 RNNRI 60
|
Length = 260 |
| >gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIG 357
+HP+A I P+AK+G V I A IGA V I DG I +AV I+G + IG
Sbjct: 2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVE-----IGDGTWIGPHAV----ILGP-TRIG 51
Query: 358 RWSRV 362
+ +++
Sbjct: 52 KNNKI 56
|
Length = 255 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIV 350
I G V + +I P + V I + IG G + + +I V I +V+ + +
Sbjct: 257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEI 316
Query: 351 GWKSSIGRWSRV--QAEGDFNAKLG 373
G +G ++R+ + +G
Sbjct: 317 GEGCDVGPFARLRPGSVLGAGVHIG 341
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-06
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 26/114 (22%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI----SACKRIYLVGFYEEREFA 66
VI+ GG + +R K L PLGG+P++ + A + +V E A
Sbjct: 1 GVILAGG--RSSRM-----GGDKALLPLGGKPLLERVLDRLRPAGDEVVVVTNRPEIAAA 53
Query: 67 LYVSSISNELRIPVRYLREDKPH-GSAGALYNFRDLIME--DNPSHIFLLNCDV 117
L + V + + P G L + + + +L CD+
Sbjct: 54 L--------AGLGVPVVPDPDPGQGPLAGLA----AGLRAAPDADAVLVLACDM 95
|
This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 58/221 (26%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC-----KRIYLV-GFYEER- 63
VI+ G KGTR + ++PK L PL G+PM+ H I A ++I++V G E+
Sbjct: 3 VVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQV 57
Query: 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
AL V ++ + + G+ A+ + +D + +L DV PL
Sbjct: 58 RKALA--------NRDVNWVLQAEQLGTGHAVLQALPFLPDD--GDVLVLYGDV----PL 103
Query: 124 ------PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD------------TNELL 165
+L+AHR G T+L K + +G ++ + D E
Sbjct: 104 ISAETLERLLEAHRQNG--ITLLTAK--LPDPTGYGRIIRENDGKVTAIVEDKDANAEQK 159
Query: 166 HYTEKPETFVSDLINCGVYVFT-PDIFNAIQGVSSQRKDRE 205
E IN GVYVF + + +S+ E
Sbjct: 160 AIKE---------INTGVYVFDGAALKRWLPKLSNNNAQGE 191
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVV-TNAIVG 351
+ P A+I +IGP + +IG GV L S +IL I E + A++G
Sbjct: 7 IEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIG 62
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254 |
| >gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-05
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 28/96 (29%)
Query: 296 VYVHPSAKIHPTAKIG------PNVSISANARIGAGVRLIS--------CIILDGVEIME 341
+HPSA + P+A IG I+ +ARIG V +I+ C+I D V I
Sbjct: 85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNV-IINTGAVIGHDCVIGDFVHIAP 143
Query: 342 NAVV-------------TNAIVGWKSSIGRWSRVQA 364
V+ A + +IG + + A
Sbjct: 144 GVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGA 179
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 4e-05
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 33/160 (20%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYEERE 64
A+I+ GG +GTR PL+ KP P GG+ ++ P+S + + ++ Y+ R
Sbjct: 1 AIILAGG--EGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSR- 57
Query: 65 FALYVSSISNELRI-----------------PVRYLREDKPHGSAGALYNFRDLIMEDNP 107
S+++ L P + D G+A A+Y D I +P
Sbjct: 58 ------SLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTADAIYQNLDYIERSDP 111
Query: 108 SHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE 147
++ +L+ D + EMLD H G T+ V K S
Sbjct: 112 EYVLILSGDHIYNMDYREMLDFHIESGADITV-VYKASMG 150
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 284 GDGTK---NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIM 340
G+G A I G V + +I P A I + +G V + + II+DG ++
Sbjct: 21 GEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVP 80
Query: 341 ENAVVTNAIVGWKSSIG 357
V ++++G ++G
Sbjct: 81 HLNYVGDSVLGENVNLG 97
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 6e-05
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 316 ISANARIGAGVRLISCIILDGVEIMENAVVTNAIVG 351
+ R+G+G + +I+ V I NAV+ AI+
Sbjct: 31 LFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIID 66
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 7e-05
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 291 TIIG--DVYVHPSAKIHPTAKIGPNVSISANARIGAGV------RLISCIILDGVEIMEN 342
TII Y+ +I I P V I N IG R++ I DGV I N
Sbjct: 253 TIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT-N 311
Query: 343 AVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIV 394
+V+ + VG ++G ++ ++ +++GE V + + V + S +
Sbjct: 312 SVIEESKVGDNVTVGPFAHLRPG---------SVIGEEVKIGNFVEIKKSTI 354
|
Length = 458 |
| >gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 7e-05
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGA---GVRLISCIILDGVEIMENAVVT 346
I V +HP A I IG NV+I A IGA II D VEI NAV+
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60
Query: 347 -NAIVGWKSSIG 357
+G + IG
Sbjct: 61 GGVKIGDNAVIG 72
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78 |
| >gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 24/108 (22%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGV--------RLISCIILDGVEI 339
+N I +HP+ I+ IG NV I + A IGA + + V I
Sbjct: 146 ENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVII 205
Query: 340 MENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEV 387
++ +G ++I R L T++GE V +++ V
Sbjct: 206 GDDVE-----IGANTTIDR-----------GALDDTVIGEGVKIDNLV 237
|
Length = 338 |
| >gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 40/218 (18%)
Query: 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA-----CKRIYLV-GFY 60
+ + A+I+ G KGTR + ++ K + PL G+PMV P++A RI LV G
Sbjct: 2 NNLAAIILAAG--KGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQ 56
Query: 61 EEREFALYVSSISNELRIPVRYLREDKPHG-------SAGALYNFRDLIMEDNPSHIFLL 113
E+ + V + +++ G +A AL F ++ +L
Sbjct: 57 AEKVREHFAG------DGDVSFALQEEQLGTGHAVACAAPALDGFSGTVL--------IL 102
Query: 114 NCDVCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEK- 170
DV L ML AHR G T+L ++ E+ +G +V D D L EK
Sbjct: 103 CGDVPLLRAETLQGMLAAHRATGAAVTVLTARL--ENPFGYGRIVRDADGRVLRIVEEKD 160
Query: 171 --PETFVSDLINCGVYVFTPD-IFNAIQGVSSQRKDRE 205
PE +N G+Y +F+AI + + E
Sbjct: 161 ATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGE 198
|
Length = 459 |
| >gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 20/106 (18%)
Query: 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSS 355
+HPSA + P+A IG I A A I VR I D V I T AIV
Sbjct: 79 TLIHPSAIVSPSASIGEGTVIMAGAVINPDVR-----IGDNVIIN-----TGAIVEHDCV 128
Query: 356 IGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTL 400
IG + + G+T+ G V + + V + + ++ T+
Sbjct: 129 IGDYVHIAP--------GVTLSGGVV-IGEGVFIGAGATIIQGVTI 165
|
This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193 |
| >gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 20/88 (22%)
Query: 313 NVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ--AE----- 365
NV++ +IGAG L +C+I D EI +VV +A +G +IG ++R++ AE
Sbjct: 283 NVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGA 342
Query: 366 --GDF----NAKLG-------ITILGEA 380
G+F A+LG +T LG+A
Sbjct: 343 HVGNFVEMKKARLGKGSKAGHLTYLGDA 370
|
Length = 456 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 29/185 (15%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYE 61
+V+A+I+ GG GTR PL+ KP PL G+ ++ PIS C +IY++
Sbjct: 3 RVLAIILGGG--AGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVL---- 56
Query: 62 EREF--ALYVSSISNELRIP------VRYL----REDKP---HGSAGALYNFRDLIMEDN 106
+F A IS V L + P G+A A+ + E +
Sbjct: 57 -TQFNSASLNRHISQTYNFDGFSGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWD 115
Query: 107 PSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLH 166
+L+ D + HR G T+ V+ V + AS FG + D D +
Sbjct: 116 VDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTD-DDGRITE 174
Query: 167 YTEKP 171
++EKP
Sbjct: 175 FSEKP 179
|
Length = 429 |
| >gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDG-VEIMENAVV-TNAIVG 351
+ P A+I KIGP I N IG G L S ++++G I N + A +G
Sbjct: 12 IEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIG 67
|
Length = 260 |
| >gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 296 VYVHPSAKIHPTAKIGPNVSISANARIG------AGVRLISCIILDGVEIMENAVVTNAI 349
Y+ I I P V IS + RIG GV + C I D V + +V+ +++
Sbjct: 263 TYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSV 322
Query: 350 VGWKSSIG 357
VG +IG
Sbjct: 323 VGDDVAIG 330
|
Length = 459 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 51/218 (23%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLV---- 57
+A+I+ GG +G+R + L+ KP GG+ ++ +S C +RI ++
Sbjct: 15 DTLALILAGG--RGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYK 72
Query: 58 ------------GFYEEREFALYVSSISNELRIPVRYLREDKPH---GSAGALYNFRDLI 102
F+ E E +V + + R+ D+ + G+A A+Y D+I
Sbjct: 73 AHSLIRHIQRGWSFFRE-ELGEFVDLLPAQQRV-------DEENWYRGTADAVYQNLDII 124
Query: 103 MEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162
+P ++ +L D ML H G T+ ++V E AS FG + D + +
Sbjct: 125 RRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVD-END 183
Query: 163 ELLHYTEKPE-----------TFVSDLINCGVYVFTPD 189
+ + EKP + S G+YVF D
Sbjct: 184 RITAFVEKPANPPAMPGDPDKSLAS----MGIYVFNAD 217
|
Length = 425 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 4e-04
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 304 IHPTAKIGPNVSIS-----ANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGR 358
I IG +I N +IG V + + I D V I + + ++IV + IG+
Sbjct: 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGK 61
Query: 359 WSRVQA 364
+
Sbjct: 62 GCTIPP 67
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA------CKRIYLVGFYEE 62
V A+I+ G G+R +IPK LGG+P++ H + A I +V ++
Sbjct: 1 VAAIILAAG--SGSRM---GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDD 55
Query: 63 REFALYVSSISNELRIPV 80
+ A ++ + +
Sbjct: 56 IDLAKELAKYGLSKVVKI 73
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218 |
| >gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 5e-04
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 14/117 (11%)
Query: 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNA----- 348
++ P+A + +G S+ A + V I I + I + +V+
Sbjct: 4 PSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPI--RIGERTNIQDGSVLHVDPGYPT 61
Query: 349 IVGWKSSIGRWSRVQAE--GDFNAKLGI--TILGEAVGVEDEVVVT-NSIVLPNKTL 400
I+G ++G + + GD N +G+ IL AV + +V S+V P K +
Sbjct: 62 IIGDNVTVGHGAVLHGCTIGD-NCLIGMGAIILDGAV-IGKGSIVAAGSLVPPGKVI 116
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153 |
| >gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats) | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 7e-04
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 291 TIIGD-VYVHPSAKIHPTAKIGPNVSISANARIGA 324
T+IG+ V + P+ I IG NV I A IG
Sbjct: 2 TVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36
|
Length = 36 |
| >gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI 48
A+I+ G G+RF PL+ + PK L + G+P++ I
Sbjct: 3 AIILAAG--LGSRFVPLTQSTPKSLLKVNGEPLIERQI 38
|
Length = 231 |
| >gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLISC------IILDGVEIMENAVV----- 345
+ PSA +HPTA + +V I N +G G I II V I + V+
Sbjct: 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGA-SIRADEGTPIIIGANVNIQDGVVIHALEG 62
Query: 346 TNAIVGWKSSI 356
+ +G SI
Sbjct: 63 YSVWIGKNVSI 73
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167 |
| >gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 332 IILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 391
+I + I ENA++ N+++G IG + +IL + V + V+ +
Sbjct: 1 LIGESTVIGENAIIKNSVIGDNVRIGD----------GVTITNSILMDNVTIGANSVIVD 50
Query: 392 SIVLPNKTLN 401
SI+ N +
Sbjct: 51 SIIGDNAVIG 60
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79 |
| >gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLV 57
VI+ G KGTR + ++PK L L G+PMV H I A ++LV
Sbjct: 8 VVILAAG--KGTR---MYSDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLV 54
|
Length = 456 |
| >gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 90/393 (22%), Positives = 151/393 (38%), Gaps = 57/393 (14%)
Query: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLVGFY--EERE 64
VI+ G +GTR + +PK L P+ G+PMV + A + +I +V + E+ E
Sbjct: 11 VILAAG--QGTRMKSA---LPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVE 65
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-- 122
AL S V + R+++ G+ A + + E + + I +L D P
Sbjct: 66 AALQGSG--------VAFARQEQQLGTGDAFLSGASALTEGD-ADILVLYGDTPLLRPDT 116
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLI--- 179
L ++ HR G TIL ++ A+ +G +V D +K T I
Sbjct: 117 LRALVADHRAQGSAMTILTGELP--DATGYGRIVRGADGAVERIVEQKDATDAEKAIGEF 174
Query: 180 NCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239
N GVYVF + + + K E ++ L A F D D +
Sbjct: 175 NSGVYVFDARAPELARRIGNDNKAGEYY--LTDLLGLYRAGGAQVRAFKLSDPDEVLGAN 232
Query: 240 GKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVH 299
+ L E +I M A L P + D T+ DV +
Sbjct: 233 DRAGLAQLEAT-LRRRINEAHMK--------AGVTLQDPGTILIED---TVTLGRDVTIE 280
Query: 300 PSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRW 359
P + ++ V+I A + + V + +G I ++V+ A VG S +G +
Sbjct: 281 PGVLLRGQTRVADGVTIGAYSVVTDSV------LHEGAVIKPHSVLEGAEVGAGSDVGPF 334
Query: 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 392
+R++ T+LGE V + + V N+
Sbjct: 335 ARLRPG---------TVLGEGVHIGNFVETKNA 358
|
Length = 481 |
| >gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 59/280 (21%), Positives = 102/280 (36%), Gaps = 80/280 (28%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLV------------- 57
AVI+ GG GTR + PKP+ +GG+P++ H + IY
Sbjct: 2 AVILAGG--LGTRISEETHLRPKPMVEIGGKPILWHIMK----IYSHHGINDFIICCGYK 55
Query: 58 GFYEEREFA---LYVSSISNELRI-----------PVRYLREDKPHGS--AGALYNFRDL 101
G+ + FA L++S ++ + P R D + G L R+
Sbjct: 56 GYVIKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREY 115
Query: 102 IMEDNPSHIFLLNC-DVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160
+ ++ F D + ++ HR +G T+ + + +FG L + +
Sbjct: 116 LDDEA----FCFTYGDGVADIDIKALIAFHRKHGKKATV----TAVQPPGRFGALDLEGE 167
Query: 161 TNELLHYTEKPETFVSD--LINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQS 218
+ + EKP D IN G +V P + + I G + + +E
Sbjct: 168 Q--VTSFQEKPL---GDGGWINGGFFVLNPSVLDLIDGDA------------TVWE---- 206
Query: 219 ATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKT 258
Q+ L LA + +L YE FW+ + T
Sbjct: 207 -------------QEPLETLAQRGELSAYEHSGFWQPMDT 233
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 38/185 (20%), Positives = 82/185 (44%), Gaps = 12/185 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+++A N T+ V+ ++G + D + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYGVVEFD-QNGTAISLEEKPLQPKSNYAVTGLYF 178
Query: 186 FTPDI 190
+ D+
Sbjct: 179 YDNDV 183
|
Length = 292 |
| >gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVV 345
V PS+ +HPTA + +V I N IG L +I DG + +N V+
Sbjct: 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVI 54
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155 |
| >gnl|CDD|225175 COG2266, COG2266, GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Query: 9 VVAVIMVGGPTKGTRFRPLSLNIP-KPLFPLGGQPMVHHPISA----CKRIYLV 57
++A+IM GG +GTR + P KPL + G+P++ + A I +
Sbjct: 1 MMAIIMAGG--RGTR-----MGRPEKPLLEVCGKPLIDRVLEALRKIVDEIIVA 47
|
Length = 177 |
| >gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL 328
+ + I P IG V I N IGAGV +
Sbjct: 1 GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVI 34
|
Length = 36 |
| >gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Score = 35.7 bits (83), Expect = 0.004
Identities = 27/80 (33%), Positives = 30/80 (37%), Gaps = 22/80 (27%)
Query: 284 GDGTK---NATIIGDVYVHPSAKIHPTA--------------KIGPNVSISANARIGAGV 326
G+G K A I G V + + I P A IG NV I ANA I G
Sbjct: 4 GEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGG- 62
Query: 327 RLISCIILDGVEIMENAVVT 346
I D I AVVT
Sbjct: 63 ----VKIGDNAVIGAGAVVT 78
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78 |
| >gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 49/185 (26%), Positives = 72/185 (38%), Gaps = 22/185 (11%)
Query: 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFY------EER 63
+ + M G G+RF+ PKPL + G+PM+ I + +I+ F
Sbjct: 1 IIIPMAG---LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNT 57
Query: 64 EFALYVSSISNELRIPVRYLREDKPH--GSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF 121
+F L S L P + E G+A + DLI D+P + + NCD
Sbjct: 58 KFHLDESLK---LLAPNATVVELDGETLGAACTVLLAADLIDNDDP--LLIFNCDQIVES 112
Query: 122 PLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINC 181
L L A R G +L S S + +L + E EK +SDL
Sbjct: 113 DLLAFLAAFRERDLDGGVLTFFSSHPRWS-YVKLDENGRVIE---TAEK--EPISDLATA 166
Query: 182 GVYVF 186
G+Y F
Sbjct: 167 GLYYF 171
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Length = 231 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 410 | |||
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 99.98 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 99.98 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 99.97 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 99.97 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 99.97 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.95 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.95 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.94 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.94 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.93 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.92 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.91 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.91 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.89 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.89 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.88 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.88 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.84 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.77 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.77 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.77 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.74 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.68 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.66 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.6 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.6 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.59 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.58 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.57 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.57 | |
| PLN02296 | 269 | carbonate dehydratase | 99.57 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.55 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.55 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.55 | |
| PLN02472 | 246 | uncharacterized protein | 99.55 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.54 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.54 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.53 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.53 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.53 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.53 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.52 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.52 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.51 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.51 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.51 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.51 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.51 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.51 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.51 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.5 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.5 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.5 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.5 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.49 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.49 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.49 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.49 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.49 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.48 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.48 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.48 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.48 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.47 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.47 | |
| PLN02296 | 269 | carbonate dehydratase | 99.47 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.47 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.47 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.47 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.46 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 99.45 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.44 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.44 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.44 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.43 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 99.43 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.43 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.43 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.42 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.42 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 99.42 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 99.42 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.42 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 99.42 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.41 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.4 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.4 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.39 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 99.39 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 99.39 | |
| PLN02472 | 246 | uncharacterized protein | 99.39 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 99.38 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.38 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 99.38 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 99.38 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.37 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.37 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.36 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.36 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.36 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.34 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.34 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.34 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.33 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.33 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.33 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.32 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.32 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.32 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.31 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.29 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.28 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.28 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.26 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.25 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.25 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 99.25 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 99.24 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.24 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.24 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 99.24 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.24 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 99.23 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.23 | |
| PLN02694 | 294 | serine O-acetyltransferase | 99.23 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.22 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 99.22 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.22 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 99.21 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 99.21 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 99.2 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.2 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 99.2 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 99.17 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.17 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 99.17 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 99.16 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 99.15 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 99.13 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.13 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.12 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 99.1 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 99.1 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 99.09 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 99.09 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 99.08 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 99.08 | |
| PLN02357 | 360 | serine acetyltransferase | 99.07 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 99.05 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.05 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 99.05 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 99.05 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 99.04 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.04 | |
| PLN02739 | 355 | serine acetyltransferase | 99.04 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 99.03 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 99.02 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 99.02 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 99.01 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.0 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 99.0 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.99 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.97 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 98.97 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.97 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.97 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.94 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.94 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.93 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.92 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.91 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.9 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.89 | |
| PLN02357 | 360 | serine acetyltransferase | 98.88 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 98.88 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.86 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.84 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.84 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.84 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.83 | |
| PLN02739 | 355 | serine acetyltransferase | 98.8 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 98.78 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.77 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.77 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.76 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.75 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.75 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 98.73 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 98.72 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 98.7 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 98.68 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 98.63 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.61 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 98.5 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 98.5 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.49 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 98.49 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 98.49 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.4 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 98.37 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 98.37 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 98.33 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 98.32 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 98.31 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 98.25 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.24 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.11 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 97.99 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 97.97 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.9 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 97.82 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.74 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.69 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.66 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.61 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 97.57 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.51 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 97.46 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 97.29 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 97.25 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 97.12 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 96.48 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 96.29 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 96.0 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 95.26 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 94.87 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 92.77 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 92.6 | |
| cd04195 | 201 | GT2_AmsE_like GT2_AmsE_like is involved in exopoly | 90.94 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 89.69 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 89.55 | |
| KOG2978 | 238 | consensus Dolichol-phosphate mannosyltransferase [ | 89.37 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 89.23 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 88.62 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 88.36 | |
| cd06427 | 241 | CESA_like_2 CESA_like_2 is a member of the cellulo | 87.46 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 85.7 | |
| cd04196 | 214 | GT_2_like_d Subfamily of Glycosyltransferase Famil | 85.32 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 85.22 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 84.79 | |
| PF04519 | 101 | Bactofilin: Polymer-forming cytoskeletal; InterPro | 84.7 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 84.67 | |
| PRK11204 | 420 | N-glycosyltransferase; Provisional | 84.49 | |
| cd02510 | 299 | pp-GalNAc-T pp-GalNAc-T initiates the formation of | 84.3 | |
| cd02520 | 196 | Glucosylceramide_synthase Glucosylceramide synthas | 84.3 | |
| cd04187 | 181 | DPM1_like_bac Bacterial DPM1_like enzymes are rela | 84.03 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 83.91 | |
| PRK10714 | 325 | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi | 83.64 | |
| cd06435 | 236 | CESA_NdvC_like NdvC_like proteins in this family a | 82.58 | |
| PF13641 | 228 | Glyco_tranf_2_3: Glycosyltransferase like family 2 | 80.55 | |
| COG1664 | 146 | CcmA Integral membrane protein CcmA involved in ce | 80.28 |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=428.14 Aligned_cols=395 Identities=65% Similarity=1.065 Sum_probs=358.5
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
+++||||-|||++|+||+||+.+.||||.|++|+|||+|-|+.+.+ |++++.|.++.+.+|+.....+++..++
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvr 81 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVR 81 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchh
Confidence 5899999999999999999999999999999999999999999998 9999999999999999988888888999
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
|+.++.+.|+++.|+..++.+-+..++.+++++||..++.+|+++++.|++.+..++++.++.+++++..||.+..|+.+
T Consensus 82 YL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t 161 (407)
T KOG1460|consen 82 YLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPST 161 (407)
T ss_pred hhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCc
Confidence 99999999999999999999876778899999999999999999999999999999999999999999999999999889
Q ss_pred CcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccch-hhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRE-NLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 162 ~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
++|+++.|||.+..++.+++|+|+|++++|+.+.+...+.++.. ... ++..... -+.++..|+.|++..|+.
T Consensus 162 ~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~------~~~~l~~-g~~d~irLeqDvlspLag 234 (407)
T KOG1460|consen 162 GEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEK------DLPLLQP-GPADFIRLEQDVLSPLAG 234 (407)
T ss_pred CceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhh------cccccCC-CccceEEeechhhhhhcC
Confidence 99999999999999999999999999999999988765543211 000 0000111 245788899999999999
Q ss_pred CCceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCCCCCCCcEEccCeEECCCCEECCCcEECCCcEECCCc
Q 015259 241 KKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANA 320 (410)
Q Consensus 241 ~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~ 320 (410)
++++|+|.+.++|..+.|+..-+.|+..|+++|+...+..+.++.+. .++|.++++|+|+|.+++.++|++|+.||+++
T Consensus 235 ~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt-~a~IigdVyIhPsakvhptAkiGPNVSIga~v 313 (407)
T KOG1460|consen 235 SKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGT-QAEIIGDVYIHPSAKVHPTAKIGPNVSIGANV 313 (407)
T ss_pred CCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCC-CceEEeeeEEcCcceeCCccccCCCceecCCc
Confidence 99999999999999999999999999999999999888888764333 37899999999999999999999999999999
Q ss_pred EECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceee----eEECCCCEECCCcEEcceEEcC
Q 015259 321 RIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGI----TILGEAVGVEDEVVVTNSIVLP 396 (410)
Q Consensus 321 ~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~----~~i~~~~~i~~~~~v~~~~v~~ 396 (410)
+||+++++.+|+|.++|.|.+|+++-+|+||.++.||..+++.+....+.+... +++|+.+.+++.+.+.+|++.|
T Consensus 314 rvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp 393 (407)
T KOG1460|consen 314 RVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLP 393 (407)
T ss_pred eecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEec
Confidence 999999999999999999999999999999999999999999997666655544 9999999999999999999999
Q ss_pred CcEEcccCCCcccC
Q 015259 397 NKTLNVSVHQEIIL 410 (410)
Q Consensus 397 ~~~v~~~~~~~~~~ 410 (410)
+..+..+++++|++
T Consensus 394 ~k~l~vs~~~eIil 407 (407)
T KOG1460|consen 394 NKELNVSVQDEIIL 407 (407)
T ss_pred CCccceeeecceeC
Confidence 99999999999985
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-56 Score=393.02 Aligned_cols=344 Identities=35% Similarity=0.611 Sum_probs=300.0
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHH-HHHHHhhcccCCccE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREF-ALYVSSISNELRIPV 80 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i-~~~~~~~~~~~~~~i 80 (410)
+.|+||||-|| .|+||+|||.++||||+|++|+|||+|++++|.+ |++.+.+..+++ .+..+....++|.++
T Consensus 8 ~~vkaiILvGG--~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei 85 (371)
T KOG1322|consen 8 QSVKAIILVGG--YGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEI 85 (371)
T ss_pred cceeEEEEecC--CCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEE
Confidence 68999999999 9999999999999999999999999999999998 888888877644 444444445566677
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
.+..|.++.|+++.+..+++++....+.+|+||+||++++.++.+++++|+++++++|++.+++ ++++.||++..|.+
T Consensus 86 ~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v--depSkyGvv~~d~~ 163 (371)
T KOG1322|consen 86 LASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV--DEPSKYGVVVIDED 163 (371)
T ss_pred EEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec--cCccccceEEEecC
Confidence 7777888999999999999998754334899999999999999999999999999999999999 66999999999944
Q ss_pred CCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
+++|.+|.|||+...+.-+++|+|+|++++++.+.... + +|+.++++.+++
T Consensus 164 ~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~p--------------------------t---SiekEifP~~a~ 214 (371)
T KOG1322|consen 164 TGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILLRP--------------------------T---SIEKEIFPAMAE 214 (371)
T ss_pred CCceeEehhCchhhhhccccceEEEECHHHHhHhhhcc--------------------------c---chhhhhhhhhhh
Confidence 89999999999988899999999999999998876321 1 155889998999
Q ss_pred CCceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCCCCCCCcEEccCeEECCCCEECCCcEECCCcEECCCc
Q 015259 241 KKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANA 320 (410)
Q Consensus 241 ~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~ 320 (410)
.+++++|.++|||+||++|.||+.+...|++......+..+. +++.+.+++.+.+.+.+|++|.|+++++||++|
T Consensus 215 ~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~-----p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~ 289 (371)
T KOG1322|consen 215 EHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLL-----PGSKIVGNVLVDSIASIGENCSIGPNVVIGPRV 289 (371)
T ss_pred cCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCcccc-----CCccccccEeeccccccCCccEECCCceECCCc
Confidence 999999999999999999999999998888765443222222 246788899999999999999999999999999
Q ss_pred EECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCC
Q 015259 321 RIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPN 397 (410)
Q Consensus 321 ~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~ 397 (410)
+|+.++.|.+|.|+.+..++.++.|..++++.++.||.+++|... ++||+++.|.+.-.+.+..+.+.
T Consensus 290 ~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~---------a~lG~nV~V~d~~~vn~g~~l~~ 357 (371)
T KOG1322|consen 290 RIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKN---------AVLGKNVIVADEDYVNEGSGLPI 357 (371)
T ss_pred EecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecc---------cEeccceEEecccccccceeEEe
Confidence 999999999999999999999999999999999999999999998 99999999988888865544443
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-53 Score=402.87 Aligned_cols=341 Identities=33% Similarity=0.536 Sum_probs=284.5
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
.|+||||||| +|+||+|||..+||||+|++|+|||+|+|++|.+ +++++.+..+++++++.+. ..++.++.+
T Consensus 1 ~mkavILagG--~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~y 77 (358)
T COG1208 1 PMKAVILAGG--YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDG-EGLGVRITY 77 (358)
T ss_pred CceEEEEeCC--ccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcc-cccCCceEE
Confidence 4899999999 9999999999999999999999999999999987 7788888899999999874 456789999
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
+.+....||+++|+++++++. .++|++++||.+++.++.+++++|+++.+.++++..+. .++..||++..+.+++
T Consensus 78 ~~e~~~lGTag~l~~a~~~l~---~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~--~~~~~~Gvv~~~~~~~ 152 (358)
T COG1208 78 VVEKEPLGTAGALKNALDLLG---GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRV--LDPSEFGVVETDDGDG 152 (358)
T ss_pred EecCCcCccHHHHHHHHHhcC---CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEec--CCCCcCceEEecCCCc
Confidence 999999999999999999996 37999999999999999999999999877788888777 4457899988873335
Q ss_pred cEEEEecCCC--CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 163 ELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 163 ~v~~i~ekp~--~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
+|..|.|||. ...++++++|+|+|++++|+.+... ..+++..++++.+++
T Consensus 153 ~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~----------------------------~~~~~~~~~~~~l~~ 204 (358)
T COG1208 153 RVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKG----------------------------ERFDFEEELLPALAA 204 (358)
T ss_pred eEEEEEecCCCCCCCCceEEeEEEEECHHHhhhcccC----------------------------CcccchhhHHHHHHh
Confidence 9999999983 5678999999999999999955421 334454679999998
Q ss_pred CCc-eeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccC-CC-CCCCcEEccCeEECCCCEECCCcEECCCcEEC
Q 015259 241 KKQ-LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLAS-GD-GTKNATIIGDVYVHPSAKIHPTAKIGPNVSIS 317 (410)
Q Consensus 241 ~~~-i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~-~~-~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig 317 (410)
.+. ++++...|+|+++++|++|+++++.+++............ .. ... +.+.+|++|+++|.|++++.|+++++||
T Consensus 205 ~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig 283 (358)
T COG1208 205 KGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIG 283 (358)
T ss_pred CCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEEC
Confidence 886 9999999999999999999999999886433221110000 00 112 7889999999999999999999999999
Q ss_pred CCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcC
Q 015259 318 ANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLP 396 (410)
Q Consensus 318 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~ 396 (410)
++|+|++++.|.+|+|+++|.|+++++|.+|+|+++|.||++. .||+ +.+|.++.+ ++.++++
T Consensus 284 ~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~---------------~i~d-~~~g~~~~i~~g~~~~~ 347 (358)
T COG1208 284 EGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL---------------IIGD-VVIGINSEILPGVVVGP 347 (358)
T ss_pred CCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce---------------eecc-eEecCceEEcCceEeCC
Confidence 9999999999999999999999999999999999999999911 1555 555555555 3444555
Q ss_pred CcEEc
Q 015259 397 NKTLN 401 (410)
Q Consensus 397 ~~~v~ 401 (410)
++.+.
T Consensus 348 ~~~~~ 352 (358)
T COG1208 348 GSVVE 352 (358)
T ss_pred Ccccc
Confidence 54443
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-51 Score=373.96 Aligned_cols=337 Identities=23% Similarity=0.387 Sum_probs=252.6
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCc
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI 78 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~ 78 (410)
|++++-|+||||| .|+||.|||+.++||.+|++|+ +||+++|+++.+ |.|++.+....+.+|++.+ ..|+.
T Consensus 2 ~~~~~laiILaGg--~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G-~~w~l 78 (393)
T COG0448 2 MKKNVLAIILAGG--RGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRG-WPWDL 78 (393)
T ss_pred CccceEEEEEcCC--CCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCC-Ccccc
Confidence 5668999999999 9999999999999999999999 999999999998 9999999999999999987 45643
Q ss_pred -----cEEEeeC-------CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCc
Q 015259 79 -----PVRYLRE-------DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSA 146 (410)
Q Consensus 79 -----~i~~i~~-------~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~ 146 (410)
.+.+++. .+..|+++++++.+..+.+..+++++++.||++++.|+.++|++|.++++++|+++.+++.
T Consensus 79 ~~~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~ 158 (393)
T COG0448 79 DRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPR 158 (393)
T ss_pred ccccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECCh
Confidence 3444432 2567999999998888876678999999999999999999999999999999999999998
Q ss_pred ccccccceEEEcCCCCcEEEEecCCCC-cccc-ceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCC
Q 015259 147 ESASQFGELVADPDTNELLHYTEKPET-FVSD-LINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNL 223 (410)
Q Consensus 147 ~~~~~~~~v~~d~~~~~v~~i~ekp~~-~~~~-l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (410)
+++++||++.+| ++++|..|.|||.. +.++ ++++|+|+|++++| ++|++... .
T Consensus 159 ~eas~fGim~~D-~~~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~-----------------------~ 214 (393)
T COG0448 159 EEASRFGVMNVD-ENGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAK-----------------------D 214 (393)
T ss_pred HhhhhcCceEEC-CCCCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhc-----------------------c
Confidence 899999999999 89999999999986 4444 89999999999875 66664321 1
Q ss_pred CCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCCC-CCCCcEEccCeEECCCC
Q 015259 224 TTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGD-GTKNATIIGDVYVHPSA 302 (410)
Q Consensus 224 ~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~i~~~~ 302 (410)
+.+..+|..++++.+++.+.+++|+++|||.+|+|.++|++||+.++..-... .++.+.- -++.....+|+++..++
T Consensus 215 ~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~--~lyd~~w~IyT~~~~~pPak~~~~s 292 (393)
T COG0448 215 PNSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPEL--NLYDRNWPIYTKNKNLPPAKFVNDS 292 (393)
T ss_pred cCccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcc--cccCCCCceeecCCCCCCceEecCc
Confidence 23556677999999998889999999999999999999999999998721110 1111100 01233345555555544
Q ss_pred EECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCE
Q 015259 303 KIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVG 382 (410)
Q Consensus 303 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~ 382 (410)
.+. +|.|+++|.|. + .|.||+|+.|++|+++|+|++|+|+++|.||.+|.|.. ++|.++|.
T Consensus 293 ~v~-------nSLv~~GciI~-G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~----------aIIDk~v~ 353 (393)
T COG0448 293 EVS-------NSLVAGGCIIS-G-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRR----------AIIDKNVV 353 (393)
T ss_pred eEe-------eeeeeCCeEEE-e-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEE----------EEeCCCcE
Confidence 432 44444444442 2 44455555555555555555555555555555555544 45555555
Q ss_pred ECCCcEE
Q 015259 383 VEDEVVV 389 (410)
Q Consensus 383 i~~~~~v 389 (410)
|++|++|
T Consensus 354 I~~g~~i 360 (393)
T COG0448 354 IGEGVVI 360 (393)
T ss_pred eCCCcEE
Confidence 5555544
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-50 Score=388.13 Aligned_cols=350 Identities=23% Similarity=0.384 Sum_probs=256.2
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCcc
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~ 79 (410)
|++|+||||||| +|+||+|||..+||||+|++|+ |||+|+|++|.+ ++|++.+..+.+.+|+++. .+|+..
T Consensus 1 ~~~m~avILAaG--~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~ 77 (380)
T PRK05293 1 KKEMLAMILAGG--QGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG-SPWDLD 77 (380)
T ss_pred CCcEEEEEECCC--CCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC-Cccccc
Confidence 568999999999 9999999999999999999999 899999999997 7778888888999999764 456532
Q ss_pred -----EE----EeeCCC---CCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcc
Q 015259 80 -----VR----YLREDK---PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE 147 (410)
Q Consensus 80 -----i~----~i~~~~---~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~ 147 (410)
+. +..+.+ ..|++++++++++++....+++|||++||.+++.++.++++.|++.++++++++...+.+
T Consensus 78 ~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~ 157 (380)
T PRK05293 78 RINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWE 157 (380)
T ss_pred CCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchh
Confidence 22 232222 489999999999998533236899999999999999999999988888888887665445
Q ss_pred cccccceEEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHHH-HhhhcccccccchhhhccchhHhhhhhccCCCCC
Q 015259 148 SASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (410)
Q Consensus 148 ~~~~~~~v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (410)
++..||++..| ++++|..+.|||..+.+++.++|+|+|++++|. .+.+.... +.+
T Consensus 158 ~~~~yG~v~~d-~~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~-----------------------~~~ 213 (380)
T PRK05293 158 EASRFGIMNTD-ENMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKN-----------------------PNS 213 (380)
T ss_pred hccccCEEEEC-CCCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhc-----------------------CCc
Confidence 67789999888 568999999999766788999999999999874 44421100 001
Q ss_pred eeeeccchhccccCC-CceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCC-CCCCCcEEccCeEECCCCEE
Q 015259 227 FVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG-DGTKNATIIGDVYVHPSAKI 304 (410)
Q Consensus 227 ~~~l~~d~l~~l~~~-~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~i~~~~~i 304 (410)
..++..|+++.++++ .+++++...|+|.+++|+++|+++++.++...... .++... .....+.+.++++|++++.|
T Consensus 214 ~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i 291 (380)
T PRK05293 214 SHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPL--NLFDRNWRIYSVNPNLPPQYIAENAKV 291 (380)
T ss_pred hhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchh--hhcCCCCceecCCcCCCCCEECCCCEE
Confidence 223337999988865 47999999999999999999999998887643221 111110 00112334445555554444
Q ss_pred CCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEEC
Q 015259 305 HPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVE 384 (410)
Q Consensus 305 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~ 384 (410)
. ++.||++|+|+ ..+.+|+||++|.|+++|+|.+|+|+++|.|++++.|.+ |+|++++.|+
T Consensus 292 ------~-~~~Ig~~~~I~--~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~----------~ii~~~~~i~ 352 (380)
T PRK05293 292 ------K-NSLVVEGCVVY--GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIER----------AIIGENAVIG 352 (380)
T ss_pred ------e-cCEECCCCEEc--ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeE----------EEECCCCEEC
Confidence 2 55666666664 245667777777777777777777777777777777766 6777777777
Q ss_pred CCcEEcc-----eEEcCCcEEccc
Q 015259 385 DEVVVTN-----SIVLPNKTLNVS 403 (410)
Q Consensus 385 ~~~~v~~-----~~v~~~~~v~~~ 403 (410)
+++.+.+ .+||.+..|..+
T Consensus 353 ~~~~i~~~~~~~~~ig~~~~~~~~ 376 (380)
T PRK05293 353 DGVIIGGGKEVITVIGENEVIGVG 376 (380)
T ss_pred CCCEEcCCCceeEEEeCCCCCCCC
Confidence 7777743 556666655443
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-49 Score=384.49 Aligned_cols=332 Identities=24% Similarity=0.374 Sum_probs=240.9
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCc
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI 78 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~ 78 (410)
||.+|+||||||| +|+||+|||..+||||+|++|+ |||+|+|++|.+ |+|++.+..+++.+|+...+...+.
T Consensus 2 ~~~~~~avILAaG--~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~ 79 (407)
T PRK00844 2 AMPKVLAIVLAGG--EGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGL 79 (407)
T ss_pred CCCceEEEEECCC--CCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcccc
Confidence 5678999999999 9999999999999999999999 999999999997 8888888889999999742111122
Q ss_pred cEEEee---CC------CCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccc
Q 015259 79 PVRYLR---ED------KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESA 149 (410)
Q Consensus 79 ~i~~i~---~~------~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~ 149 (410)
.+.++. +. ...|++++++.+++++.....++|++++||++++.++.+++++|+++++++++++.+.+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~ 159 (407)
T PRK00844 80 LGNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEA 159 (407)
T ss_pred CCCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHc
Confidence 223321 11 258999999999999963323569999999999999999999999888888888876544567
Q ss_pred cccceEEEcCCCCcEEEEecCCCCcc-------ccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhcc
Q 015259 150 SQFGELVADPDTNELLHYTEKPETFV-------SDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATR 221 (410)
Q Consensus 150 ~~~~~v~~d~~~~~v~~i~ekp~~~~-------~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (410)
..||++..| ++++|..|.|||.... +.++++|+|+|++++| +.|.+....
T Consensus 160 ~~~Gvv~~d-~~g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~--------------------- 217 (407)
T PRK00844 160 SAFGVIEVD-PDGRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAAD--------------------- 217 (407)
T ss_pred ccCCEEEEC-CCCCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcC---------------------
Confidence 789999998 6789999999986432 5789999999999986 666542110
Q ss_pred CCCCCeeeeccchhccccCCCceeEEec------------cceeeecCCccchhhhhHHHHhhhhhc-----CCCcccCC
Q 015259 222 NLTTDFVRLDQDILSPLAGKKQLYTYET------------MDFWEQIKTPGMSLKCSGLYLAQFRLT-----SPNLLASG 284 (410)
Q Consensus 222 ~~~~~~~~l~~d~l~~l~~~~~i~~~~~------------~g~~~~i~t~~~~~~an~~~~~~~~~~-----~~~~~~~~ 284 (410)
+.+.+++..|+++.+++++.+++|.+ .|+|.|++++++|+++++.++...... ...+....
T Consensus 218 --~~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~ 295 (407)
T PRK00844 218 --EDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSS 295 (407)
T ss_pred --CcccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccC
Confidence 01223444799999998888999965 599999999999999999998642211 00011000
Q ss_pred -CCCC--------CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCE
Q 015259 285 -DGTK--------NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSS 355 (410)
Q Consensus 285 -~~~~--------~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ 355 (410)
+.+. ...+.++++|+++|.|+ ++.|. +|+||++|+|+++|.|.+|+|+++|+|+++|+|.+|+|++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~ 373 (407)
T PRK00844 296 PNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVV 373 (407)
T ss_pred CCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCE
Confidence 0000 01123445666666665 56665 5666666666666666666666666666666666666666666
Q ss_pred ECCCcEEcc
Q 015259 356 IGRWSRVQA 364 (410)
Q Consensus 356 i~~~~~i~~ 364 (410)
|+++++|.+
T Consensus 374 i~~~~~i~~ 382 (407)
T PRK00844 374 VPPGATIGV 382 (407)
T ss_pred ECCCCEECC
Confidence 666666655
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=366.89 Aligned_cols=340 Identities=24% Similarity=0.329 Sum_probs=278.7
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEeccc-chHHHHHHHHhhcccCCccEEEe
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~-~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+.+.+ +++++.+ ..+.+.+++++. ..|+.++.++
T Consensus 1 kaiIlAaG--~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~-~~~~~~~~~~ 77 (353)
T TIGR01208 1 KALILAAG--KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEG-ERFGAKITYI 77 (353)
T ss_pred CEEEECCc--CcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcc-cccCceEEEE
Confidence 58999999 9999999999999999999999999999999997 6666666 778889998764 4677778887
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~ 163 (410)
.+....|++++++.+++++. .++|++++||.+++.++.++++.|+++++++++++.+. +++..|+++..+ ++++
T Consensus 78 ~~~~~~G~~~al~~a~~~l~---~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~--~~~~~~g~~~~~-~~~~ 151 (353)
T TIGR01208 78 VQGEPLGLAHAVYTARDFLG---DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKV--RDPTAFGVAVLE-DGKR 151 (353)
T ss_pred ECCCCCCHHHHHHHHHHhcC---CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEEC--CChhhCeEEEEc-CCCc
Confidence 77778999999999999985 36899999999999999999999998888889888876 456679988876 5678
Q ss_pred EEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC-
Q 015259 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK- 242 (410)
Q Consensus 164 v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~- 242 (410)
|..+.+||....+++.++|+|+|++.+++.+.+..... .+.+++ .|+++.+++++
T Consensus 152 v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~-----------------------~~e~~l-~d~l~~l~~~g~ 207 (353)
T TIGR01208 152 ILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSW-----------------------RGELEI-TDAIQWLIEKGY 207 (353)
T ss_pred EEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCCC-----------------------CCcEEH-HHHHHHHHHcCC
Confidence 99999999877788999999999998888886432110 123445 78999988665
Q ss_pred ceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCCCCCCCcEEccCeEECCCCEECCCcEECCCcEECCCcEE
Q 015259 243 QLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARI 322 (410)
Q Consensus 243 ~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i 322 (410)
++++|..+|+|.+++||++|+++++.++.+....... ....+.+.++++|++++.| .++.|.+++.||++|+|
T Consensus 208 ~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~~------i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I 280 (353)
T TIGR01208 208 KVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQG------VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCII 280 (353)
T ss_pred eEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccccCC------cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEE
Confidence 7999999999999999999999999998743221111 1235677888999999999 78888888888888888
Q ss_pred CCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCc-EEccCCCCCcceeeeEECCCCEECCCcEEc---ceEEcCC
Q 015259 323 GAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWS-RVQAEGDFNAKLGITILGEAVGVEDEVVVT---NSIVLPN 397 (410)
Q Consensus 323 ~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~-~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~---~~~v~~~ 397 (410)
+ ++.|. +|+|+++|.|+ ++.|.+|+|++++.|+.++ .+.+ ++|++++.|++++.+. +.++|..
T Consensus 281 ~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~----------~ii~~~~~i~~~~~~~~~~~~~~g~~ 348 (353)
T TIGR01208 281 E-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVD----------SVIGKKVRIKGNRRRPGDLRLTIGDY 348 (353)
T ss_pred c-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeec----------CEEcCCCEECCCcccccccceEEcCC
Confidence 7 45554 77788888887 6778899999999998884 7776 8999999999999995 3567776
Q ss_pred cEEc
Q 015259 398 KTLN 401 (410)
Q Consensus 398 ~~v~ 401 (410)
+.|.
T Consensus 349 ~~~~ 352 (353)
T TIGR01208 349 SQVE 352 (353)
T ss_pred ceec
Confidence 6653
|
Alternate name: dTDP-D-glucose synthase |
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=375.70 Aligned_cols=357 Identities=22% Similarity=0.345 Sum_probs=266.6
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCcc
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~ 79 (410)
|++|+||||||| +|+||+|||..+||||+|++|+ |||+|+|+++.+ ++|++.+..+.+.+|++..+ .|+..
T Consensus 1 ~~~~~aIIlA~G--~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~-~~~~~ 77 (436)
T PLN02241 1 PKSVAAIILGGG--AGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAY-NFGNG 77 (436)
T ss_pred CCceEEEEEeCC--CCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccC-CCCCC
Confidence 468999999999 9999999999999999999997 999999999987 88888888889999998531 12211
Q ss_pred -------EEEe--eCC-----CCCCcHHHHHHhHHHhcccC---CCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEE
Q 015259 80 -------VRYL--RED-----KPHGSAGALYNFRDLIMEDN---PSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVI 142 (410)
Q Consensus 80 -------i~~i--~~~-----~~~g~~~~l~~~~~~l~~~~---~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~ 142 (410)
+.+. .+. +..|++++++.++.++.+.. .++||+++||.+++.++.+++++|+++++++|+++.
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~ 157 (436)
T PLN02241 78 GNFGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACL 157 (436)
T ss_pred cccCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEE
Confidence 2222 221 36899999999887765322 478999999999999999999999999999999988
Q ss_pred ecCcccccccceEEEcCCCCcEEEEecCCCCcc---------------------ccceeeeEEEEcHHHHH-Hhhhcccc
Q 015259 143 KVSAESASQFGELVADPDTNELLHYTEKPETFV---------------------SDLINCGVYVFTPDIFN-AIQGVSSQ 200 (410)
Q Consensus 143 ~~~~~~~~~~~~v~~d~~~~~v~~i~ekp~~~~---------------------~~l~~~Giy~~~~~~~~-~l~~~~~~ 200 (410)
+...+++..|+++..| ++++|..|.|||..+. ++++++|+|+|++++|. .+++....
T Consensus 158 ~v~~~~~~~ygvv~~d-~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~ 236 (436)
T PLN02241 158 PVDESRASDFGLMKID-DTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPT 236 (436)
T ss_pred ecchhhcCcceEEEEC-CCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccc
Confidence 8755566889999998 6789999999985432 37999999999999985 44432210
Q ss_pred cccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCC-CceeEEeccceeeecCCccchhhhhHHHHhhhhhc---
Q 015259 201 RKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLT--- 276 (410)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~--- 276 (410)
..++..|+++.++++ .++++|.++|||.++++|++|+++++.++......
T Consensus 237 --------------------------~~~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~ 290 (436)
T PLN02241 237 --------------------------ANDFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFY 290 (436)
T ss_pred --------------------------ccchhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhcc
Confidence 112347899988876 58999999999999999999999999998743110
Q ss_pred --CCCcccCCCC-----CCCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECC--------------
Q 015259 277 --SPNLLASGDG-----TKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILD-------------- 335 (410)
Q Consensus 277 --~~~~~~~~~~-----~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~-------------- 335 (410)
...+...... ..++.+.+ ++|+++|.|+ +|.|+ +|+|+++|.|+++|.|.+|+++.
T Consensus 291 ~~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~ 367 (436)
T PLN02241 291 DPDAPIYTSPRFLPPSKIEDCRITD-SIISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLL 367 (436)
T ss_pred CCCCcccccCCCCCCcEecCCeEEE-eEEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEeEEECCCcccccccccccc
Confidence 0111111000 02333443 7788888888 88886 78899999999999998888755
Q ss_pred --C---CEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCc-EE-cceEEcCCc
Q 015259 336 --G---VEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEV-VV-TNSIVLPNK 398 (410)
Q Consensus 336 --~---~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~-~v-~~~~v~~~~ 398 (410)
+ +.|+++|+|.+++|+++|+||+++.|.+... ..+..++|+++.|++|. +| .+..|.+|+
T Consensus 368 ~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 434 (436)
T PLN02241 368 AEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDG---VQEADREEEGYYIRSGIVVILKNAVIPDGT 434 (436)
T ss_pred ccCCcceEECCCCEEcceEecCCCEECCCcEEecccc---cCCccccccccEEeCCEEEEcCCcEeCCCC
Confidence 3 3789999999999999999999988875411 11113445666666653 33 333444444
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=374.69 Aligned_cols=327 Identities=23% Similarity=0.361 Sum_probs=248.9
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcc--cCC
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISN--ELR 77 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~--~~~ 77 (410)
|++++||||||| +|+||+|||..+||||+|++|+ |||+|+|++|.+ ++|++.+..+.+.+++++... .+.
T Consensus 1 m~~~~AVILAaG--~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~ 78 (429)
T PRK02862 1 MKRVLAIILGGG--AGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFS 78 (429)
T ss_pred CCcEEEEEECCC--CCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccC
Confidence 457999999999 9999999999999999999999 999999999997 788888888889999875211 011
Q ss_pred cc-EEEe--eCC-----CCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccc
Q 015259 78 IP-VRYL--RED-----KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESA 149 (410)
Q Consensus 78 ~~-i~~i--~~~-----~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~ 149 (410)
.. +.+. .+. ...|++++++++++++....+++|+|++||++++.++.++++.|++.++++|+++.+...+++
T Consensus 79 ~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 158 (429)
T PRK02862 79 GGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDA 158 (429)
T ss_pred CCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhc
Confidence 11 2221 111 127999999999999864334689999999999999999999999888888988877654567
Q ss_pred cccceEEEcCCCCcEEEEecCCCCc---------------------cccceeeeEEEEcHHHHH-Hhhhcccccccchhh
Q 015259 150 SQFGELVADPDTNELLHYTEKPETF---------------------VSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENL 207 (410)
Q Consensus 150 ~~~~~v~~d~~~~~v~~i~ekp~~~---------------------~~~l~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~ 207 (410)
..||++..| ++++|..|.|||... ...++++|+|+|++++|. .+.+..
T Consensus 159 ~~yG~i~~d-~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~--------- 228 (429)
T PRK02862 159 SGFGLMKTD-DDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP--------- 228 (429)
T ss_pred ccceEEEEC-CCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC---------
Confidence 789999998 678999999998631 235889999999999985 444321
Q ss_pred hccchhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhhhhhc------CCCcc
Q 015259 208 RRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLT------SPNLL 281 (410)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~------~~~~~ 281 (410)
++.++..|+++.+++++.+++|...|+|.+++|+++|+++|+.++...... ...+.
T Consensus 229 ------------------~~~~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~ 290 (429)
T PRK02862 229 ------------------EYTDFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIY 290 (429)
T ss_pred ------------------ChhhhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCcee
Confidence 122343688888888889999999999999999999999999987321110 00111
Q ss_pred cCCC-----CCCCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECC-------------------CC
Q 015259 282 ASGD-----GTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILD-------------------GV 337 (410)
Q Consensus 282 ~~~~-----~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~-------------------~~ 337 (410)
.... ....+.+. +++|+++|.| +++.|. +|+||++|+||++|.|.+|+|+. ++
T Consensus 291 ~~~~~~~~a~~~~~~~~-~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~ 367 (429)
T PRK02862 291 TRARYLPPSKLLDATIT-ESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPL 367 (429)
T ss_pred ccCCCCCCccccccEEE-eCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCccc
Confidence 0000 01123333 4678888888 777776 68888888888888888888865 68
Q ss_pred EECCCCEEEeeEECCCCEECCCcEEccC
Q 015259 338 EIMENAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 338 ~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
.||++|.|.+|+|+++|.||++++|.+.
T Consensus 368 ~Ig~~~~i~~~ii~~~~~i~~~~~~~~~ 395 (429)
T PRK02862 368 GIGEGTTIKRAIIDKNARIGNNVRIVNK 395 (429)
T ss_pred EECCCCEEEEEEECCCcEECCCcEEecC
Confidence 8888888888888888888888888654
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=369.01 Aligned_cols=340 Identities=17% Similarity=0.256 Sum_probs=257.5
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchH-HHHHHHHhhcccCCccE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEER-EFALYVSSISNELRIPV 80 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~-~i~~~~~~~~~~~~~~i 80 (410)
+|+||||||| +|+||+|||..+||||+|++|+ |||+|+|++|.+ |+|++.+..+ ++++|+++. ..|+.++
T Consensus 2 ~~~avila~g--~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~-~~~~~~~ 78 (369)
T TIGR02092 2 KMSAIINLTE--SSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSG-REWDLHR 78 (369)
T ss_pred cEEEEEECCC--CCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCC-CCCCccc
Confidence 6999999999 9999999999999999999999 999999999998 7777777665 899999764 4566553
Q ss_pred ------EEeeC-CCC--CCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccc
Q 015259 81 ------RYLRE-DKP--HGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQ 151 (410)
Q Consensus 81 ------~~i~~-~~~--~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 151 (410)
.++.+ ... .|++++++.+++++....+++|||++||++++.++.+++++|+++++++|+++.+...+++..
T Consensus 79 ~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~ 158 (369)
T TIGR02092 79 KRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASE 158 (369)
T ss_pred ccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccc
Confidence 22222 223 356667888888884222468999999999999999999999988899999988774345667
Q ss_pred cce-EEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeee
Q 015259 152 FGE-LVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVR 229 (410)
Q Consensus 152 ~~~-v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (410)
|+. +..+ +++++..+.+++.......+++|+|+|+++++ +.+.+.... ++..
T Consensus 159 ~g~vv~~~-~~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~-------------------------~~~~ 212 (369)
T TIGR02092 159 YDTILRFD-ESGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQR-------------------------GKLT 212 (369)
T ss_pred cCcEEEEc-CCCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhc-------------------------Cccc
Confidence 854 5565 45678777543322234567899999999865 555432110 1111
Q ss_pred eccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCCC--CCCCcEEccCeEECCCCEECCC
Q 015259 230 LDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGD--GTKNATIIGDVYVHPSAKIHPT 307 (410)
Q Consensus 230 l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~i~~~~~i~~~ 307 (410)
+..++++.+++++.++++..+|+|.+++|+++|++|+..+++.+... ..+.... ......+.+|++|++++.
T Consensus 213 ~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~p~~i~~~~~---- 286 (369)
T TIGR02092 213 SLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQ--SLFYSSQGPIYTKVKDEPPTYYAENSK---- 286 (369)
T ss_pred cHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchh--hhcCCCCCceeeccCCCCCcEEcCCCE----
Confidence 22688888887788999999999999999999999999988764432 1111100 001111235555555544
Q ss_pred cEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCc
Q 015259 308 AKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEV 387 (410)
Q Consensus 308 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~ 387 (410)
| ++++||++|+|+ +.|.+|+|+++|.|+++|.|.+|+|++++.|++++++.+ |+||+++.|++++
T Consensus 287 --i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~----------~ii~~~~~v~~~~ 351 (369)
T TIGR02092 287 --V-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN----------VIIDKDVVIEPNV 351 (369)
T ss_pred --E-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE----------EEECCCCEECCCC
Confidence 4 378899999996 468899999999999999999999999999999999988 9999999999999
Q ss_pred EEcceEEcCC
Q 015259 388 VVTNSIVLPN 397 (410)
Q Consensus 388 ~v~~~~v~~~ 397 (410)
.+.+..+.|.
T Consensus 352 ~~~~~~~~~~ 361 (369)
T TIGR02092 352 KIAGTSEQPL 361 (369)
T ss_pred EeCCCCCccE
Confidence 9976655554
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=367.35 Aligned_cols=333 Identities=18% Similarity=0.287 Sum_probs=234.4
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCcc-chhhhHhhccc-----EEEecccchHHHHHHHHhhccc---
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQP-MVHHPISACKR-----IYLVGFYEEREFALYVSSISNE--- 75 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~p-li~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~--- 75 (410)
|+.+++||||||| +|+||+|||..+||||+|++|+| ||+|+|+.|.+ ++|++.+..+.+.+|+++.+..
T Consensus 12 ~~~~~~aVILAaG--~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~ 89 (425)
T PRK00725 12 LTRDTLALILAGG--RGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFRE 89 (425)
T ss_pred hhcceEEEEECCC--CCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhccccc
Confidence 4568999999999 99999999999999999999996 99999999997 8888888888899998753110
Q ss_pred -CCccEEEee-------CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcc
Q 015259 76 -LRIPVRYLR-------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE 147 (410)
Q Consensus 76 -~~~~i~~i~-------~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~ 147 (410)
.+..+.+.. +.+..|++++++++++++....+++|+|++||++++.++.++++.|+++++++++++.+...+
T Consensus 90 ~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~ 169 (425)
T PRK00725 90 ELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPRE 169 (425)
T ss_pred CCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchh
Confidence 011122221 223589999999999999643346899999999999999999999999888889888776545
Q ss_pred cccccceEEEcCCCCcEEEEecCCCCc-------cccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhh
Q 015259 148 SASQFGELVADPDTNELLHYTEKPETF-------VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSA 219 (410)
Q Consensus 148 ~~~~~~~v~~d~~~~~v~~i~ekp~~~-------~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (410)
++..||++..| ++++|..|.|||..+ .+.++++|+|+|++++| +.|.+....
T Consensus 170 ~~~~yG~v~~d-~~~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~------------------- 229 (425)
T PRK00725 170 EASAFGVMAVD-ENDRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAED------------------- 229 (425)
T ss_pred hcccceEEEEC-CCCCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcC-------------------
Confidence 67889999998 568999999998643 25789999999999975 566542110
Q ss_pred ccCCCCCeeeeccchhccccCCCceeEEecc-----------ceeeecCCccchhhhhHHHHhhhhhc-----CCCcccC
Q 015259 220 TRNLTTDFVRLDQDILSPLAGKKQLYTYETM-----------DFWEQIKTPGMSLKCSGLYLAQFRLT-----SPNLLAS 283 (410)
Q Consensus 220 ~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~-----------g~~~~i~t~~~~~~an~~~~~~~~~~-----~~~~~~~ 283 (410)
+...+++..|+++.+++++.+++|.+. +||.|++|+++|+++|+.++...... ...+...
T Consensus 230 ----~~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~ 305 (425)
T PRK00725 230 ----PNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTY 305 (425)
T ss_pred ----CCccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccC
Confidence 011223447999999988899999875 69999999999999999987532110 0001110
Q ss_pred CCC-CCC---------cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Q 015259 284 GDG-TKN---------ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWK 353 (410)
Q Consensus 284 ~~~-~~~---------~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~ 353 (410)
... +.. .....+++|+++|.| ++|.|. +|+||++|+|+++|.|.+|+|+++|.|+++|+|.+|+|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~ 383 (425)
T PRK00725 306 QEQLPPAKFVFDRSGRRGMAINSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRG 383 (425)
T ss_pred CCCCCCCeEeccCCCCcceEEeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCC
Confidence 000 000 011224455555555 455554 45555555555555555555555555555555555555555
Q ss_pred CEECCCcEEccC
Q 015259 354 SSIGRWSRVQAE 365 (410)
Q Consensus 354 ~~i~~~~~i~~~ 365 (410)
|.|++++.|+.+
T Consensus 384 ~~i~~~~~i~~~ 395 (425)
T PRK00725 384 CVIPEGMVIGED 395 (425)
T ss_pred CEECCCCEECCC
Confidence 555555555443
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=355.24 Aligned_cols=335 Identities=22% Similarity=0.359 Sum_probs=258.4
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccC---CccEE
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL---RIPVR 81 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~---~~~i~ 81 (410)
||||||| +|+||+|+|..+||||+|++|+ |||+|+|+.|.+ |+|++.+..+.+.+++.+.+... ...++
T Consensus 1 aiILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 78 (361)
T TIGR02091 1 AMVLAGG--RGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVT 78 (361)
T ss_pred CEEeCCC--CCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEE
Confidence 6999999 9999999999999999999999 899999999997 78888787788888887421100 11233
Q ss_pred Eee-------CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccce
Q 015259 82 YLR-------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGE 154 (410)
Q Consensus 82 ~i~-------~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 154 (410)
+.. +....|++++++.+++++.....++|++++||++++.++.++++.|++.++++++++...+.+++..|++
T Consensus 79 ~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~ 158 (361)
T TIGR02091 79 LLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGV 158 (361)
T ss_pred EeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccE
Confidence 321 1235799999999999885333467999999999999999999999887777888877765456778999
Q ss_pred EEEcCCCCcEEEEecCCCCcccc-------ceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCC
Q 015259 155 LVADPDTNELLHYTEKPETFVSD-------LINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (410)
Q Consensus 155 v~~d~~~~~v~~i~ekp~~~~~~-------l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (410)
+..| ++++|..+.|||..+... ++++|+|+|+++++ +.+....... ..
T Consensus 159 v~~d-~~~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~-----------------------~~ 214 (361)
T TIGR02091 159 MQVD-EDGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDP-----------------------ES 214 (361)
T ss_pred EEEC-CCCCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcC-----------------------Cc
Confidence 9998 567899999998655455 89999999999986 5554321110 01
Q ss_pred eeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCCCCCCCcEE-ccCeEECCCCEEC
Q 015259 227 FVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATI-IGDVYVHPSAKIH 305 (410)
Q Consensus 227 ~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~i~~~~~i~ 305 (410)
..++..|+++.+++++++++|..+++|.+++|+++|+++++.++....... .+... ..+ ....++.+.+.++
T Consensus 215 ~~~~~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~i~ 287 (361)
T TIGR02091 215 SHDFGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFD--LYDRK-----WPIYTYNEFLPPAKFVD 287 (361)
T ss_pred ccccHHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhh--ccccC-----CceecCCCCCCCceEec
Confidence 122336899999988899999999999999999999999999987543211 11110 000 0111333344444
Q ss_pred CCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECC
Q 015259 306 PTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVED 385 (410)
Q Consensus 306 ~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~ 385 (410)
+++.+. +++||++|+|+++ .|.+|+|+++|.|+++|+|.+|+|++++.|+.+++|.+ |+||+++.|++
T Consensus 288 ~~~~i~-~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~----------~ivg~~~~i~~ 355 (361)
T TIGR02091 288 SDAQVV-DSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRN----------AIIDKNVRIGE 355 (361)
T ss_pred CCCEEE-CCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEee----------eEECCCCEECC
Confidence 444443 7889999999876 88999999999999999999999999999999999987 99999999999
Q ss_pred CcEEc
Q 015259 386 EVVVT 390 (410)
Q Consensus 386 ~~~v~ 390 (410)
++.+.
T Consensus 356 ~~~i~ 360 (361)
T TIGR02091 356 GVVIG 360 (361)
T ss_pred CCEeC
Confidence 98874
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=337.56 Aligned_cols=346 Identities=22% Similarity=0.345 Sum_probs=285.4
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
.+.+|||||| .|+||.. .+||-|.|++|+||++|+|+.... +++|..+..+.+.+.+.+. ..+.|
T Consensus 2 ~~~~vILAAG--kGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-----~~v~~ 71 (460)
T COG1207 2 SLSAVILAAG--KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-----DDVEF 71 (460)
T ss_pred CceEEEEecC--CCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-----cCceE
Confidence 5789999999 9999999 999999999999999999999886 5555555566766666531 15889
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+.|.+++||+++++++++++.+..+.++||++||++. ...|+++++.|.+.++.++++++.. ++|..||.+..+ +
T Consensus 72 v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~--~dP~GYGRIvr~-~ 148 (460)
T COG1207 72 VLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL--DDPTGYGRIVRD-G 148 (460)
T ss_pred EEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc--CCCCCcceEEEc-C
Confidence 9999999999999999999954545689999999984 4558999999998899999999988 889999999998 6
Q ss_pred CCcEEEEecCCC----CccccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 161 TNELLHYTEKPE----TFVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 161 ~~~v~~i~ekp~----~~~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
++.|..|.|..+ ...-..+++|+|+|+... +++|.... +++...||| | +|++
T Consensus 149 ~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~----nnNaqgEYY------------------L-TDvI 205 (460)
T COG1207 149 NGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLS----NNNAQGEYY------------------L-TDVI 205 (460)
T ss_pred CCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhc----cccccCcEe------------------H-HHHH
Confidence 789999988654 345678999999999864 67776533 233444444 4 8888
Q ss_pred ccccCC-CceeEEeccce--eeecCCccchhhhhHHHHhhhhhcCCCcccCC---CCCCCcEEccCeEECCCCEECCCcE
Q 015259 236 SPLAGK-KQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG---DGTKNATIIGDVYVHPSAKIHPTAK 309 (410)
Q Consensus 236 ~~l~~~-~~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~i~~~~~i~~~~~ 309 (410)
..+.+. ..+.++...++ ..-+++-.++.++.+.|.++.... ++..+ -.|.+..+.+.+.|++++.|.+++.
T Consensus 206 ~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~---~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~ 282 (460)
T COG1207 206 AIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEK---LMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVI 282 (460)
T ss_pred HHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHH---HHHcCcEEeCCCeEEEcCcEEECCceEEecCcE
Confidence 877644 47888876643 556788888888888887665442 11111 1245788999999999999999999
Q ss_pred ECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 310 IGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 310 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
|.+++.||++|+||++|+|.+|.|++|+.|..+++|++|.|+++|.||++++|.++ +.|++++.||+.+.+
T Consensus 283 l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg---------~~L~~~~hIGNFVEv 353 (460)
T COG1207 283 LEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPG---------AVLGADVHIGNFVEV 353 (460)
T ss_pred EeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCc---------CcccCCCeEeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cceEEcCCcEEc
Q 015259 390 TNSIVLPNKTLN 401 (410)
Q Consensus 390 ~~~~v~~~~~v~ 401 (410)
+++.|+.|+-+.
T Consensus 354 K~a~ig~gsKa~ 365 (460)
T COG1207 354 KKATIGKGSKAG 365 (460)
T ss_pred ecccccCCcccc
Confidence 888888776543
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=350.94 Aligned_cols=340 Identities=22% Similarity=0.314 Sum_probs=268.5
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccE
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPV 80 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i 80 (410)
|++++||||||| .|+||++ ..||+|+|++|+|||+|+|+.+.+ +++++.+..+.+.+++.+. ..+
T Consensus 1 m~~~~avIlAaG--~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i 70 (459)
T PRK14355 1 MNNLAAIILAAG--KGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDV 70 (459)
T ss_pred CCcceEEEEcCC--CCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----Cce
Confidence 457999999999 9999985 789999999999999999999986 6777777777777777542 146
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
.++.+.+..|++++++.+++++... .++|++++||.+ .+.++.++++.|.+.+++++++..+. +++..|+.+..|
T Consensus 71 ~~~~~~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~--~~~~~~g~v~~d 147 (459)
T PRK14355 71 SFALQEEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARL--ENPFGYGRIVRD 147 (459)
T ss_pred EEEecCCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCcCCEEEEc
Confidence 6766777889999999999998522 368999999984 46679999999988777878777766 456678988887
Q ss_pred CCCCcEEEEecCCCC----ccccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccc
Q 015259 159 PDTNELLHYTEKPET----FVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQD 233 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~----~~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 233 (410)
++++|..+.|||.. ..++++++|+|+|+++. ++.+....... +...+++ .|
T Consensus 148 -~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~----------------------~~~e~~~-~d 203 (459)
T PRK14355 148 -ADGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDN----------------------AQGEYYL-TD 203 (459)
T ss_pred -CCCCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccc----------------------cCCceeH-HH
Confidence 57789999987532 13478899999999986 46565432110 1123445 79
Q ss_pred hhccccCCC-ceeEEeccce--eeecCCccchhhhhHHHHhhhhhcC----CCcccCCCCCCCcEEccCeEECCCCEECC
Q 015259 234 ILSPLAGKK-QLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRLTS----PNLLASGDGTKNATIIGDVYVHPSAKIHP 306 (410)
Q Consensus 234 ~l~~l~~~~-~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~i~~~~~i~~ 306 (410)
+++.+++++ ++++|+..++ |.+++||++|+++++.+........ ..+.. +....+.+++.|++++.|++
T Consensus 204 ~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~----~~~~~i~~~v~ig~~~~I~~ 279 (459)
T PRK14355 204 IVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLID----PETTYIDRGVVIGRDTTIYP 279 (459)
T ss_pred HHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC----CCceEECCCeEEcCCCEEeC
Confidence 999998775 7999999887 9999999999999886665432211 11111 12346888999999999999
Q ss_pred CcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCC
Q 015259 307 TAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDE 386 (410)
Q Consensus 307 ~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~ 386 (410)
+|.|+++++||++|.|+++|.|.+|+||++|.|+.++++.+++|++++.|++++.+..+ +.|++++.||++
T Consensus 280 ~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~---------~~i~~~~~ig~~ 350 (459)
T PRK14355 280 GVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPG---------TELSAHVKIGNF 350 (459)
T ss_pred CcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCC---------CEeCCCCEECCC
Confidence 99999999999999999999999999999999999999999999999999999999887 777777777776
Q ss_pred cEEcceEEc
Q 015259 387 VVVTNSIVL 395 (410)
Q Consensus 387 ~~v~~~~v~ 395 (410)
+.+++++|+
T Consensus 351 ~~~~~~~ig 359 (459)
T PRK14355 351 VETKKIVMG 359 (459)
T ss_pred ccccCCEEC
Confidence 654443333
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=337.31 Aligned_cols=354 Identities=18% Similarity=0.323 Sum_probs=278.7
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCc---
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI--- 78 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~--- 78 (410)
..++||++|.. +.+||+|+|..+|++|||++|.|||+|+|++|.+ ++|+++.+..++.+|+++. +|..
T Consensus 23 ~rLqAIllaDs--f~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~s--ew~~~~~ 98 (673)
T KOG1461|consen 23 HRLQAILLADS--FETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKS--EWYLPMS 98 (673)
T ss_pred cceEEEEEecc--chhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhc--ccccccc
Confidence 46899999999 9999999999999999999999999999999998 9999998899999999873 4433
Q ss_pred -cEEEeeCCCCCCcHHHHHHhHHH-hcccCCCcEEEEcCCcccCCChHHHHHHHHhc-----CCceEEEEEecCcccccc
Q 015259 79 -PVRYLREDKPHGSAGALYNFRDL-IMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNY-----GGMGTILVIKVSAESASQ 151 (410)
Q Consensus 79 -~i~~i~~~~~~g~~~~l~~~~~~-l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~-----~~~~~l~~~~~~~~~~~~ 151 (410)
.+..+...+....|++++..-+. +. .++|++++||++.+.+|.++|++|+++ ++.|||++.+........
T Consensus 99 ~~v~ti~s~~~~S~GDamR~id~k~li---tgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~ 175 (673)
T KOG1461|consen 99 FIVVTICSGESRSVGDAMRDIDEKQLI---TGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTE 175 (673)
T ss_pred ceEEEEcCCCcCcHHHHHHHHHhccee---ecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCc
Confidence 34444445667788888765442 22 489999999999999999999999664 357888877653111222
Q ss_pred cceEEEcCCCCcEEEEecC--CC----------------CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchh
Q 015259 152 FGELVADPDTNELLHYTEK--PE----------------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSF 213 (410)
Q Consensus 152 ~~~v~~d~~~~~v~~i~ek--p~----------------~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 213 (410)
--.+.+|+.+.+++.+.+. +. ..+.++.+++|.+||++++.+|.+.|+.
T Consensus 176 ~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDy------------- 242 (673)
T KOG1461|consen 176 QVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNFDY------------- 242 (673)
T ss_pred ceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcccc-------------
Confidence 3356777778999999851 11 2468999999999999999999987643
Q ss_pred HhhhhhccCCCCCeeeeccchhcccc----CCCceeEEeccc--eeeecCCccchhhhhHHHHhhhhhcC-CCcccCCCC
Q 015259 214 EALQSATRNLTTDFVRLDQDILSPLA----GKKQLYTYETMD--FWEQIKTPGMSLKCSGLYLAQFRLTS-PNLLASGDG 286 (410)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~d~l~~l~----~~~~i~~~~~~g--~~~~i~t~~~~~~an~~~~~~~~~~~-~~~~~~~~~ 286 (410)
. .+.|+++.++ -+.+|+++.... |..++.++..|...++.+++||.++. |..-..+.
T Consensus 243 --------------q-~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~- 306 (673)
T KOG1461|consen 243 --------------Q-TRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGN- 306 (673)
T ss_pred --------------e-ehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCC-
Confidence 2 2345554433 356899998775 89999999999999999999999874 22211111
Q ss_pred CCCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCC
Q 015259 287 TKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 366 (410)
.+-..-..+.|-++.+.+...|.++.++.||.++.||.++.|.||+||.||.||.+|+|.+|.||+||+||+||+|.+
T Consensus 307 q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~-- 384 (673)
T KOG1461|consen 307 QTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDH-- 384 (673)
T ss_pred ceeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEee--
Confidence 111112335677888888888888889999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEcccCCC
Q 015259 367 DFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQ 406 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~ 406 (410)
|+||+++.|++|+.+ ++|+++.+.+|+++...
T Consensus 385 --------aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l 417 (673)
T KOG1461|consen 385 --------AIICDDVKIGEGAILKPGSVLGFGVVVGRNFVL 417 (673)
T ss_pred --------eEeecCcEeCCCcccCCCcEEeeeeEeCCCccc
Confidence 899999999999999 68888888888876554
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=341.35 Aligned_cols=339 Identities=21% Similarity=0.291 Sum_probs=260.5
Q ss_pred CCCCCCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhccc
Q 015259 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNE 75 (410)
Q Consensus 1 ~~~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~ 75 (410)
|+.+- ++|+||||||| +|+||++ ..||+|+|++|+|||+|+|+.|.+ ++|++.+..+.+.++++.
T Consensus 1 ~~~~~-~~~~avILAaG--~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~---- 70 (481)
T PRK14358 1 MTEQT-RPLDVVILAAG--QGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG---- 70 (481)
T ss_pred CCccc-CCceEEEECCC--CCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc----
Confidence 55544 37999999999 9999997 689999999999999999999986 677777767777777642
Q ss_pred CCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccc
Q 015259 76 LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 76 ~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (410)
..+.++.++...|++++++.+++++.. ..++|++++||.+ .+.++.++++.|+++++.+++++.+. +++..||
T Consensus 71 --~~i~~v~~~~~~Gt~~al~~~~~~l~~-~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~--~~~~~yG 145 (481)
T PRK14358 71 --SGVAFARQEQQLGTGDAFLSGASALTE-GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGEL--PDATGYG 145 (481)
T ss_pred --CCcEEecCCCcCCcHHHHHHHHHHhhC-CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEc--CCCCCce
Confidence 246777777788999999999998842 2356999999985 35679999999988888888888777 4566799
Q ss_pred eEEEcCCCCcEEEEecCCCCc----cccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeee
Q 015259 154 ELVADPDTNELLHYTEKPETF----VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVR 229 (410)
Q Consensus 154 ~v~~d~~~~~v~~i~ekp~~~----~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (410)
++..| ++++|..|.|||... .++++++|+|+|++++++.++..... .+.+.++
T Consensus 146 ~v~~d-~~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~----------------------~~~ge~~ 202 (481)
T PRK14358 146 RIVRG-ADGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGND----------------------NKAGEYY 202 (481)
T ss_pred EEEEC-CCCCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCC----------------------ccCCeEE
Confidence 99998 678999999987632 24578999999997765555432210 0113455
Q ss_pred eccchhccccCCC-ceeEEeccceeeecCCccchhhhhHH-HHhhhh-hcC--CCcccCCCCCCCcEEccCeEECCCCEE
Q 015259 230 LDQDILSPLAGKK-QLYTYETMDFWEQIKTPGMSLKCSGL-YLAQFR-LTS--PNLLASGDGTKNATIIGDVYVHPSAKI 304 (410)
Q Consensus 230 l~~d~l~~l~~~~-~i~~~~~~g~~~~i~t~~~~~~an~~-~~~~~~-~~~--~~~~~~~~~~~~~~i~~~~~i~~~~~i 304 (410)
+ .|+++.+++++ .+++|+..++|..++.-.+|+.++.. +++... ... ..... ..+....+.++++||+++.|
T Consensus 203 l-~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~~Ig~~~~I 279 (481)
T PRK14358 203 L-TDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTL--QDPGTILIEDTVTLGRDVTI 279 (481)
T ss_pred H-HHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEE--ecCCeeeccCCcEECCCCEE
Confidence 6 79999988775 69999988888877776666555532 332211 110 00000 01223445788999999999
Q ss_pred CCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEEC
Q 015259 305 HPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVE 384 (410)
Q Consensus 305 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~ 384 (410)
+++|.|.+++.||++|+|+++|.|.+|+||++|.|+++++|.+++|++++.|+.++.+..+ ++||+++.|+
T Consensus 280 ~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~---------~~Ig~~~~Ig 350 (481)
T PRK14358 280 EPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPG---------TVLGEGVHIG 350 (481)
T ss_pred eCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCC---------cEECCCCEEC
Confidence 9999999999999999999999999999999999999999999999999999999999866 7777777777
Q ss_pred CCcEE
Q 015259 385 DEVVV 389 (410)
Q Consensus 385 ~~~~v 389 (410)
+++.+
T Consensus 351 ~~~~i 355 (481)
T PRK14358 351 NFVET 355 (481)
T ss_pred CCEEE
Confidence 76554
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=340.40 Aligned_cols=318 Identities=18% Similarity=0.277 Sum_probs=247.3
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
.+.||||||| .|+||++ .+||+|+|++|+|||+|+|+.|.+ +++++.+..+.+.++++.. ...+.+
T Consensus 4 ~~~avILAaG--~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~----~~~~~~ 74 (482)
T PRK14352 4 PTAVIVLAAG--AGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAEL----APEVDI 74 (482)
T ss_pred CceEEEEcCC--CCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhcc----CCccEE
Confidence 5789999999 9999997 689999999999999999999986 6666666666777777542 123556
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+.++...|++++++.+++++....+++|++++||.+ ...++.++++.|++.+..++++..+. .++..|+.+..+ +
T Consensus 75 ~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~--~~p~~yg~~~~~-~ 151 (482)
T PRK14352 75 AVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTL--DDPTGYGRILRD-Q 151 (482)
T ss_pred EeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeec--CCCCCCCEEEEC-C
Confidence 667778899999999999885333467999999985 35679999999988777777777666 567789988887 5
Q ss_pred CCcEEEEecCCCCcc----ccceeeeEEEEcHHHHH-HhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 161 TNELLHYTEKPETFV----SDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~----~~l~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
+++|..+.|||.... .+++++|+|+|++++|. .+....... +.+.+++ .|++
T Consensus 152 ~g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~----------------------~~~e~~l-~d~i 208 (482)
T PRK14352 152 DGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDN----------------------AQGELYL-TDVL 208 (482)
T ss_pred CCCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccc----------------------cCCcEeH-HHHH
Confidence 789999999986432 45789999999999874 444322110 0133445 8999
Q ss_pred ccccCCC-ceeEEeccceeeecCCccch------hhhhHHHHhhhhhcCCCcccCCCCCCCcEEccCeEECCCCEECCCc
Q 015259 236 SPLAGKK-QLYTYETMDFWEQIKTPGMS------LKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTA 308 (410)
Q Consensus 236 ~~l~~~~-~i~~~~~~g~~~~i~t~~~~------~~an~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~ 308 (410)
+.+++++ .+++|+.+++|.++++++.| ..++..++..+......++. ++.+.+.++++||+++.|++++
T Consensus 209 ~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~----~~~~~i~~~v~ig~~~~I~~~~ 284 (482)
T PRK14352 209 AIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVD----PATTWIDVDVTIGRDVVIHPGT 284 (482)
T ss_pred HHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC----CCeEEEeCCEEECCCcEEeCCc
Confidence 9998775 79999999999999988777 34444444433322222222 2367788999999999999999
Q ss_pred EECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccC
Q 015259 309 KIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 309 ~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
.|.++++||++|+|+++|.|.+++||++|.|+. +++.+++|++++.||+++.+.++
T Consensus 285 ~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~ 340 (482)
T PRK14352 285 QLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPG 340 (482)
T ss_pred EEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCC
Confidence 999999999999999999999999999999974 77888888888888888888765
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=340.41 Aligned_cols=346 Identities=17% Similarity=0.225 Sum_probs=263.3
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCcc
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~ 79 (410)
|.+.+.||||||| .|+||+. .+||+|+|++|+|||+|+++.|.. ++|++.+..+.+.+++.. ..
T Consensus 2 ~~~~~~aiILAaG--~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~------~~ 70 (456)
T PRK14356 2 MASTTGALILAAG--KGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD------ED 70 (456)
T ss_pred CCcceeEEEEcCC--CCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc------cC
Confidence 4456899999999 9999974 799999999999999999999987 666666666666666532 24
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEE
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~ 157 (410)
+.++.++...|++++++.+++++.....++|++++||.++ ..++..+++.|. +++++++..+. .++..|+.+..
T Consensus 71 ~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~--~~~~~~g~v~~ 146 (456)
T PRK14356 71 ARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL--PDPGAYGRVVR 146 (456)
T ss_pred ceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc--CCCCCceEEEE
Confidence 5666667778999999999998864334789999999953 456889988875 55677777776 56678998866
Q ss_pred cCCCCcEEEEecCCCC------ccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeec
Q 015259 158 DPDTNELLHYTEKPET------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLD 231 (410)
Q Consensus 158 d~~~~~v~~i~ekp~~------~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (410)
+ +++|..+.|+|.. +.++++++|+|+|+++.++.+.+..... ...+.+.+
T Consensus 147 ~--~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~---------------------~~~~e~~l- 202 (456)
T PRK14356 147 R--NGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNA---------------------NKSGEYYI- 202 (456)
T ss_pred c--CCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCc---------------------ccCCcEEH-
Confidence 4 6799999988642 3467889999999999876543221100 01123445
Q ss_pred cchhccccCCC-ceeEEeccc--eeeecCCccchhhhhHHHHhhhhhc--CCCcccCCCCCCCcEEccCeEECCCCEECC
Q 015259 232 QDILSPLAGKK-QLYTYETMD--FWEQIKTPGMSLKCSGLYLAQFRLT--SPNLLASGDGTKNATIIGDVYVHPSAKIHP 306 (410)
Q Consensus 232 ~d~l~~l~~~~-~i~~~~~~g--~~~~i~t~~~~~~an~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~ 306 (410)
.++++.+++.+ .+.++...+ .|.+++||+||.+++..+..+.... ...... ..+.+..+.+++.|++++.|..
T Consensus 203 td~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i--~~~~~~~i~~~~~i~~~~~i~~ 280 (456)
T PRK14356 203 TDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLI--HAPESVRIGPRATIEPGAEIYG 280 (456)
T ss_pred HHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEE--eCCCcEEECCCcEECCCCEEeC
Confidence 78888887554 789988765 5799999999999887665542211 011110 0123577778888888888888
Q ss_pred CcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCC
Q 015259 307 TAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDE 386 (410)
Q Consensus 307 ~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~ 386 (410)
++.|.++++||++|+|+++|.|.+|+||++|.|+++|.|.+++|+++|.||++++|.++ ++||+++.|+++
T Consensus 281 ~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~ig~~~~ig~~ 351 (456)
T PRK14356 281 PCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPG---------AVLEEGARVGNF 351 (456)
T ss_pred CcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCC---------CEECCCCEecCC
Confidence 88888899999999999999999999999999999999999999999999999999876 778888888777
Q ss_pred cEEcceEEcCCcEE
Q 015259 387 VVVTNSIVLPNKTL 400 (410)
Q Consensus 387 ~~v~~~~v~~~~~v 400 (410)
+.+.+++|++++.+
T Consensus 352 ~~i~~~~i~~~~~i 365 (456)
T PRK14356 352 VEMKKAVLGKGAKA 365 (456)
T ss_pred ceeeeeEecCCcEe
Confidence 77766665555444
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=310.26 Aligned_cols=359 Identities=19% Similarity=0.323 Sum_probs=246.1
Q ss_pred CCCCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEeccc-chHHHHHHHHhhcccC
Q 015259 3 SSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSISNEL 76 (410)
Q Consensus 3 ~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~-~~~~i~~~~~~~~~~~ 76 (410)
+|| .+|+|||+||| .|+||-.++...|||||||+|+|||+|+|.+|.+ ++|++.. ....++.++.+. +
T Consensus 5 s~~-~efqavV~a~~--ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~---~ 78 (433)
T KOG1462|consen 5 SPM-SEFQAVVLAGG--GGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSN---I 78 (433)
T ss_pred cch-HHhhhheeecC--CceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcC---C
Confidence 444 57999999999 9999999999999999999999999999999998 6666655 445677777653 2
Q ss_pred Ccc-----EEEee-CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecC-----
Q 015259 77 RIP-----VRYLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVS----- 145 (410)
Q Consensus 77 ~~~-----i~~i~-~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~----- 145 (410)
.++ +.+-. .....|++++|+.....++ .+||||+.||.+++.++..+++.++..++...+++....
T Consensus 79 ~l~~~~~~v~ip~~~~~d~gtadsLr~Iy~kik---S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~ 155 (433)
T KOG1462|consen 79 DLKKRPDYVEIPTDDNSDFGTADSLRYIYSKIK---SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPI 155 (433)
T ss_pred cccccccEEEeecccccccCCHHHHhhhhhhhc---cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccc
Confidence 222 22211 1336799999999999997 369999999999999999999999977665444443321
Q ss_pred ---c-ccccccceEEEcCCCCcEEEEecC-----------------CC-CccccceeeeEEEEcHHHHHHhhhccccccc
Q 015259 146 ---A-ESASQFGELVADPDTNELLHYTEK-----------------PE-TFVSDLINCGVYVFTPDIFNAIQGVSSQRKD 203 (410)
Q Consensus 146 ---~-~~~~~~~~v~~d~~~~~v~~i~ek-----------------p~-~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~ 203 (410)
+ +....+.++..+.+++|+...... |. +..++|.++++|+|+.+++++|.+..+...-
T Consensus 156 pgqk~k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSf 235 (433)
T KOG1462|consen 156 PGQKGKKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSF 235 (433)
T ss_pred cCcccccccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceee
Confidence 0 112234556666456666554432 11 2458899999999999999999865433322
Q ss_pred chhhhccchhHhhh--hhccCCCCCeeeeccchhcccc-----CCCceeEEe--ccceeeecCCccchhhhhH--HHHhh
Q 015259 204 RENLRRVSSFEALQ--SATRNLTTDFVRLDQDILSPLA-----GKKQLYTYE--TMDFWEQIKTPGMSLKCSG--LYLAQ 272 (410)
Q Consensus 204 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~d~l~~l~-----~~~~i~~~~--~~g~~~~i~t~~~~~~an~--~~~~~ 272 (410)
+....+|....+++ ++.....+....- +.+-+... ++-++++|. ..+.+.+++|+..|+++|+ .+.+-
T Consensus 236 k~~f~P~lvkkQ~q~~~~~~~~~~~~l~t-~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l 314 (433)
T KOG1462|consen 236 KADFLPYLVKKQFQKNPPLKKNETSILPT-PNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKL 314 (433)
T ss_pred cccccchhhhhhhhcCCCcccccccccCC-ccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHh
Confidence 33333333333332 1100000000000 11111111 112344443 4467889999999999995 22221
Q ss_pred hhhcCCCcccCCCCCCCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECC
Q 015259 273 FRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGW 352 (410)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~ 352 (410)
-.+ ...... +. ... +.++..++||++|+|++++.|..|+||++|.||+.++|.+|++++
T Consensus 315 ~~e--~~~~k~-------------~~---~~~---~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~ 373 (433)
T KOG1462|consen 315 CSE--AKFVKN-------------YV---KKV---ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMD 373 (433)
T ss_pred ccc--cccccc-------------hh---hhe---eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeec
Confidence 100 001000 00 111 334457888889999999999999999999999999999999999
Q ss_pred CCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 353 KSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 353 ~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
|++||++++|.+ |+||.+++||+|+.+.+|.|+++++|++
T Consensus 374 nV~vg~G~~Ien----------sIIg~gA~Ig~gs~L~nC~Ig~~yvVea 413 (433)
T KOG1462|consen 374 NVVVGDGVNIEN----------SIIGMGAQIGSGSKLKNCIIGPGYVVEA 413 (433)
T ss_pred CcEecCCcceec----------ceecccceecCCCeeeeeEecCCcEEcc
Confidence 999999999998 9999999999999999999999999984
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=330.95 Aligned_cols=337 Identities=20% Similarity=0.311 Sum_probs=256.8
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|+||||||| .|+||++ ..||+|+|++|+|||+|+++.+.+ +++++.+..+.+.+++++ + .+.++
T Consensus 1 m~aiIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~----~--~i~~~ 69 (451)
T TIGR01173 1 LSVVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN----R--DVNWV 69 (451)
T ss_pred CeEEEEcCC--CCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC----C--CcEEE
Confidence 789999999 9999997 789999999999999999999987 667777767777777654 3 34555
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
.+....|++++++++++++.. .++|++++||.+ ...++.++++.|.+. .+++++.+. +++..|+.+..+ ++
T Consensus 70 ~~~~~~G~~~ai~~a~~~l~~--~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~--~~~~~~g~v~~d-~~ 142 (451)
T TIGR01173 70 LQAEQLGTGHAVLQALPFLPD--DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL--PDPTGYGRIIRE-ND 142 (451)
T ss_pred EcCCCCchHHHHHHHHHhcCC--CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec--CCCCCCCEEEEc-CC
Confidence 556667999999999998852 257999999984 355689999888654 356666665 456669988887 56
Q ss_pred CcEEEEecCCCCc----cccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhc
Q 015259 162 NELLHYTEKPETF----VSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILS 236 (410)
Q Consensus 162 ~~v~~i~ekp~~~----~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 236 (410)
++|..+.|||... ...++++|+|+|++++ ++.+.+..... .+..+.+ .++++
T Consensus 143 g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~----------------------~~~e~~~-~~~~~ 199 (451)
T TIGR01173 143 GKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNN----------------------AQGEYYL-TDVIA 199 (451)
T ss_pred CCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhccccc----------------------ccCcEeH-HHHHH
Confidence 7899999886432 2347889999999988 45555422110 0122334 78888
Q ss_pred cccCCC-ceeEEeccce--eeecCCccchhhhhHHHHhhhhhcC--CCcccCCCCCCCcEEccCeEECCCCEECCCcEEC
Q 015259 237 PLAGKK-QLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRLTS--PNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIG 311 (410)
Q Consensus 237 ~l~~~~-~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~ 311 (410)
.+++++ .+++|+..++ |.+++|+++|..++..+..+..... ..... ..+....+.+++.||+++.|++++.|+
T Consensus 200 ~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~~ig~~~~i~~~~~i~ 277 (451)
T TIGR01173 200 LAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTL--RDPARFDIRGTVEIGRDVEIDPNVILE 277 (451)
T ss_pred HHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEE--ecCCeEEECCccEECCCCEEcCCeEEe
Confidence 888665 7999998887 8999999999888765554322211 11100 112356688899999999999999999
Q ss_pred CCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcc
Q 015259 312 PNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 391 (410)
Q Consensus 312 ~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~ 391 (410)
++++||++|.|+++|.|.+++|+++|.|+++|.|.+++|+++|.|++++.|.++ ++|+++|.|++++.+.+
T Consensus 278 ~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~i~~~~~Ig~~~~i~~ 348 (451)
T TIGR01173 278 GKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPG---------SVLGAGVHIGNFVETKN 348 (451)
T ss_pred CceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCC---------CEECCCcEEccceeecC
Confidence 999999999999999999999999999999999999999999999999999876 67777776666655544
Q ss_pred eEEcCC
Q 015259 392 SIVLPN 397 (410)
Q Consensus 392 ~~v~~~ 397 (410)
+.|+.+
T Consensus 349 ~~ig~~ 354 (451)
T TIGR01173 349 ARIGKG 354 (451)
T ss_pred cEECCC
Confidence 444433
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=323.52 Aligned_cols=364 Identities=18% Similarity=0.243 Sum_probs=243.0
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
+++.||||||| .|+||++ ..||+|+|++|+|||+|+++.|.+ ++|++.+..+.+.+++.. +...+.
T Consensus 4 ~~~~aiILAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~----~~~~~~ 74 (446)
T PRK14353 4 RTCLAIILAAG--EGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAK----IAPDAE 74 (446)
T ss_pred ccceEEEEcCC--CCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhc----cCCCce
Confidence 37999999999 9999985 689999999999999999999986 677777777777777654 222344
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc-c-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcC
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC-C-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i-~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~ 159 (410)
+..+....|++++++.+++++... .++|++++||.+ + ..++..+++.+ +.+++++++..+. .++..|+.+..+
T Consensus 75 ~~~~~~~~G~~~sl~~a~~~l~~~-~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~--~~~~~~g~~~~~- 149 (446)
T PRK14353 75 IFVQKERLGTAHAVLAAREALAGG-YGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRA--ADPTGYGRLIVK- 149 (446)
T ss_pred EEEcCCCCCcHHHHHHHHHHHhcc-CCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEe--CCCCcceEEEEC-
Confidence 555667789999999999988421 368999999985 3 44578888744 4456777776665 556678887764
Q ss_pred CCCcEEEEecCCCCc----cccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccch
Q 015259 160 DTNELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (410)
Q Consensus 160 ~~~~v~~i~ekp~~~----~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (410)
+++|..+.|||... .+.+.++|+|+|+++.| +.+++..... ..+.+.+ .+.
T Consensus 150 -~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~----------------------~~~~~~~-~d~ 205 (446)
T PRK14353 150 -GGRLVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDN----------------------AKGEYYL-TDI 205 (446)
T ss_pred -CCeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccC----------------------CCCcEeH-HHH
Confidence 57899999987431 23678999999998664 6555322100 1122334 788
Q ss_pred hccccCCC-ceeEEecc-ceeeecCCccchhhhhHHHHhhhhhc----CCCcccCCC--------CCCCcEEccCeEECC
Q 015259 235 LSPLAGKK-QLYTYETM-DFWEQIKTPGMSLKCSGLYLAQFRLT----SPNLLASGD--------GTKNATIIGDVYVHP 300 (410)
Q Consensus 235 l~~l~~~~-~i~~~~~~-g~~~~i~t~~~~~~an~~~~~~~~~~----~~~~~~~~~--------~~~~~~i~~~~~i~~ 300 (410)
++.+++.+ +++.+..+ ++|.+|+||+||.+++..+..+.... ...++.+.. -..++.+.++++|++
T Consensus 206 ~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~ 285 (446)
T PRK14353 206 VAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGP 285 (446)
T ss_pred HHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECC
Confidence 88887665 69999876 57999999999999997765432110 111121110 002334444455555
Q ss_pred CCEECCCcEECC-----CcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCE-----------ECCCcEEc
Q 015259 301 SAKIHPTAKIGP-----NVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSS-----------IGRWSRVQ 363 (410)
Q Consensus 301 ~~~i~~~~~i~~-----~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~-----------i~~~~~i~ 363 (410)
++.|+++|.|++ +++||++|+||+++.|. +++||++|.|++++.+.+++|++++. ||+++.|+
T Consensus 286 ~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig 365 (446)
T PRK14353 286 GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIG 365 (446)
T ss_pred CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEEC
Confidence 555555555543 45666666666666665 66677777777776665555555432 33333333
Q ss_pred cCCCC-----CcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 364 AEGDF-----NAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 364 ~~~~~-----~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
.+... ....+ ++||++++||.++++ ++++|+++++|..++++.-+
T Consensus 366 ~~~~~~~~~~~~~~~-~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~~ 422 (446)
T PRK14353 366 AGTITCNYDGFNKHR-TEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDAL 422 (446)
T ss_pred CceeeeccccccCCC-cEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCCE
Confidence 32110 00112 778888888888877 67788888888888887654
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=322.26 Aligned_cols=356 Identities=16% Similarity=0.224 Sum_probs=234.6
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
.++||||||| .|+||++ .+||+|+|++|+|||+|+++.+.+ ++|+..+..+.+.+++++. + ..+.++
T Consensus 2 ~~~aiIlAaG--~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~~~~i~Ivv~~~~~~i~~~~~~~---~-~~v~~~ 72 (430)
T PRK14359 2 KLSIIILAAG--KGTRMKS---SLPKVLHTICGKPMLFYILKEAFAISDDVHVVLHHQKERIKEAVLEY---F-PGVIFH 72 (430)
T ss_pred CccEEEEcCC--CCccCCC---CCCceeCEECCccHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhc---C-CceEEE
Confidence 4889999999 9999987 899999999999999999999986 6667777778888887642 1 135555
Q ss_pred eC--CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 84 RE--DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 84 ~~--~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
.+ ....|++++++.+.. ..++|++++||.++. ..+.++.+.+.++++++.+.+. +++..|+.+..+ +
T Consensus 73 ~~~~~~~~gt~~al~~~~~-----~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~--~~~~~~g~v~~d--~ 141 (430)
T PRK14359 73 TQDLENYPGTGGALMGIEP-----KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL--ADPKGYGRVVIE--N 141 (430)
T ss_pred EecCccCCCcHHHHhhccc-----CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc--CCCccCcEEEEc--C
Confidence 43 345789999876321 147899999999642 2345555555566777777776 456678887765 5
Q ss_pred CcEEEEecCCCC----ccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhcc
Q 015259 162 NELLHYTEKPET----FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (410)
Q Consensus 162 ~~v~~i~ekp~~----~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (410)
+++..+.+++.. ..+.+.++|+|+|++++|+.+.+..... .....+.+ .|+++.
T Consensus 142 g~v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~---------------------~~~~e~~l-~d~i~~ 199 (430)
T PRK14359 142 GQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQ---------------------NAQKEYYL-TDIIAL 199 (430)
T ss_pred CeEEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcc---------------------cccCceeh-hhHHHH
Confidence 789999887642 2246789999999999987654321100 00122334 788888
Q ss_pred ccCC-CceeEEecc-ceeeecCCccchhhhhHHHHhhhhhcC--CC-cc-cCCC--CCCCcEEccCeEECCCCEECCCcE
Q 015259 238 LAGK-KQLYTYETM-DFWEQIKTPGMSLKCSGLYLAQFRLTS--PN-LL-ASGD--GTKNATIIGDVYVHPSAKIHPTAK 309 (410)
Q Consensus 238 l~~~-~~i~~~~~~-g~~~~i~t~~~~~~an~~~~~~~~~~~--~~-~~-~~~~--~~~~~~i~~~~~i~~~~~i~~~~~ 309 (410)
+++. ..+.++..+ ++|.+|++|+||.+++..+..+..... .. .+ .+.. ...++.+.+++.|++++.|+++|.
T Consensus 200 l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~ 279 (430)
T PRK14359 200 AIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSK 279 (430)
T ss_pred HHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeE
Confidence 8765 579998876 589999999999999876654432210 00 00 0000 113556666677777777766665
Q ss_pred ECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE---------------------------eeEECCCCEECCCcEE
Q 015259 310 IGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT---------------------------NAIVGWKSSIGRWSRV 362 (410)
Q Consensus 310 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~---------------------------~~~i~~~~~i~~~~~i 362 (410)
|+ ++.||++|.|++ +.|.+|+||++|+|+++++|. +|+|+++|.||.++.+
T Consensus 280 i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~ 357 (430)
T PRK14359 280 IE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTIT 357 (430)
T ss_pred EE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceE
Confidence 55 555555555543 444444444444444444444 4444444455554444
Q ss_pred ccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 363 QAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 363 ~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
.+.. .....+ ++||++|+||.++.+ .+++|++|++|..++++..+
T Consensus 358 ~~~~-~~~~~~-~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~ 409 (430)
T PRK14359 358 CNYD-GKKKHK-TIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSL 409 (430)
T ss_pred cccc-CccCcC-CEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcE
Confidence 3211 011111 678888888888777 57889999999999988653
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=324.05 Aligned_cols=323 Identities=22% Similarity=0.308 Sum_probs=230.8
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+|+||||||| .|+||++ .+||+|+|++|+|||+|+++.|.+ +++++.+..+.+.+++.. .++.+
T Consensus 5 ~~~aiIlAaG--~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~------~~~~~ 73 (456)
T PRK09451 5 AMSVVILAAG--KGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD------EPLNW 73 (456)
T ss_pred CceEEEEcCC--CCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc------CCcEE
Confidence 6999999999 9999985 789999999999999999999976 666666666777777653 14566
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+.+.+..|++++++.+++++.. .++|++++||.+ .+.++.++++.|.+.+ +++++.+. +++..||++..+
T Consensus 74 i~~~~~~Gt~~al~~a~~~l~~--~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~--~~~~~yG~v~~~-- 145 (456)
T PRK09451 74 VLQAEQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKL--DNPTGYGRITRE-- 145 (456)
T ss_pred EECCCCCCcHHHHHHHHHhhcc--CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEc--CCCCCceEEEec--
Confidence 6677788999999999998852 368999999984 4567999988875433 44555555 556779987543
Q ss_pred CCcEEEEecCCCCc----cccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 161 TNELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 161 ~~~v~~i~ekp~~~----~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
+++|..|.|||... .++++++|+|+|++++| +++++..... ..+.+.+ .|++
T Consensus 146 ~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~----------------------~~~e~~l-~d~i 202 (456)
T PRK09451 146 NGKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNN----------------------AQGEYYI-TDII 202 (456)
T ss_pred CCeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCcc----------------------ccCceeH-HHHH
Confidence 67999999998531 24689999999999876 4555422110 1133345 8999
Q ss_pred ccccCCC-ceeEEe------ccce--eeecCCccchhhhhHH--HHhhhhhcCCCcccCCCCCCCcEEccCeEECCCCEE
Q 015259 236 SPLAGKK-QLYTYE------TMDF--WEQIKTPGMSLKCSGL--YLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKI 304 (410)
Q Consensus 236 ~~l~~~~-~i~~~~------~~g~--~~~i~t~~~~~~an~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i 304 (410)
+.+++++ .+++|. ..|+ |.+++++++|++++.. ++..- ..++.+ ....+.+++.+++++.|
T Consensus 203 ~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~----~~~~~p----~~~~~~~~~~ig~~~~I 274 (456)
T PRK09451 203 ALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAG----VMLRDP----ARFDLRGTLTHGRDVEI 274 (456)
T ss_pred HHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcC----CEEeCC----CEEEECCcEEECCCCEE
Confidence 9998774 788885 4566 6779999999998742 22110 001111 12234456667777777
Q ss_pred CCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEEC
Q 015259 305 HPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVE 384 (410)
Q Consensus 305 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~ 384 (410)
+++|.|.++++||++|.|+++|.|.+|+|+++|.|++++.|.+|+|++++.|++++.|..+ +.|++++.|+
T Consensus 275 ~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~i~~~~~ig 345 (456)
T PRK09451 275 DTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPG---------AELAEGAHVG 345 (456)
T ss_pred cCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCC---------CEECCCceec
Confidence 7777777777777777777777777777777777777777777777777777777777654 4445444444
Q ss_pred CCcEE
Q 015259 385 DEVVV 389 (410)
Q Consensus 385 ~~~~v 389 (410)
+++.+
T Consensus 346 ~~~~i 350 (456)
T PRK09451 346 NFVEM 350 (456)
T ss_pred cceee
Confidence 44443
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=289.03 Aligned_cols=230 Identities=25% Similarity=0.428 Sum_probs=206.6
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----E-EEecccchHHHHHHHHhhcccCCccEEE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----I-YLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i-~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
|++|||||| .||||+|+|...||.|+|+.+||||+|.|+.|.. | +|+++.+...+++++.++ ++|+.+++|
T Consensus 1 mKgiILAgG--~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdg-s~~gv~itY 77 (286)
T COG1209 1 MKGVILAGG--SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDG-SDFGVDITY 77 (286)
T ss_pred CCcEEecCc--CccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCc-cccCcceEE
Confidence 789999999 9999999999999999999999999999999997 4 455666778889999886 789999999
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
..|.++.|.++|+..+++++. +++|+++.||.++..++.++++.+.++..+++++..++ .++++||++..| +++
T Consensus 78 ~~Q~~p~GlA~Av~~a~~fv~---~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V--~dP~rfGV~e~d-~~~ 151 (286)
T COG1209 78 AVQPEPDGLAHAVLIAEDFVG---DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEV--DDPSRYGVVEFD-EDG 151 (286)
T ss_pred EecCCCCcHHHHHHHHHhhcC---CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEc--CCcccceEEEEc-CCC
Confidence 999999999999999999997 58999999999986699999999988888999999999 789999999999 677
Q ss_pred cEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC
Q 015259 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242 (410)
Q Consensus 163 ~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 242 (410)
+++.+.|||..+.|+++-+|+|+|++.+|+.++....+. .+.+++ +|+++.+++++
T Consensus 152 ~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~-----------------------RGElEI-Td~i~~~i~~G 207 (286)
T COG1209 152 KVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSA-----------------------RGELEI-TDAIDLYIEKG 207 (286)
T ss_pred cEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCC-----------------------CCceEe-hHHHHHHHHcC
Confidence 999999999999999999999999999999988754332 366777 99999999887
Q ss_pred -ceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 243 -QLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 243 -~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
.+......|.|.|++|+++|++|+.....
T Consensus 208 ~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 208 YLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred cEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 45566677899999999999999988766
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=318.06 Aligned_cols=340 Identities=22% Similarity=0.374 Sum_probs=258.5
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+++||||||| .|+||++ .+||+|+|++|+|||+|+|+.|.+ ++++..+..+.+.+++.. .+.+
T Consensus 2 ~~~avIlAaG--~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-------~~~~ 69 (458)
T PRK14354 2 NRYAIILAAG--KGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-------RSEF 69 (458)
T ss_pred CceEEEEeCC--CCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-------CcEE
Confidence 5789999999 9999985 789999999999999999999987 666666666777777543 2445
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+.+....|++++++.+++++... .+.|++++||.+ .+.++.++++.|.+.++++++++... +++..|+.+..+ +
T Consensus 70 ~~~~~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~--~~~~~~g~v~~d-~ 145 (458)
T PRK14354 70 ALQEEQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA--ENPTGYGRIIRN-E 145 (458)
T ss_pred EEcCCCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc--CCCCCceEEEEc-C
Confidence 55667789999999999988521 257999999975 35679999999987777778777765 455678888777 5
Q ss_pred CCcEEEEecCCCC----ccccceeeeEEEEcHH-HHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 161 TNELLHYTEKPET----FVSDLINCGVYVFTPD-IFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 161 ~~~v~~i~ekp~~----~~~~l~~~Giy~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
+++|..+.++|.. ....+.++|+|+|+++ +++.+++..... ....+.+ .|++
T Consensus 146 ~~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~----------------------~~~~~~~-~d~~ 202 (458)
T PRK14354 146 NGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDN----------------------AQGEYYL-TDVI 202 (458)
T ss_pred CCCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccc----------------------cCCcEeH-HHHH
Confidence 7789999987632 2346789999999997 466665432110 0122334 7888
Q ss_pred ccccCC-CceeEEeccce--eeecCCccchhhhhHHHHhhhhhc--CC--CcccCCCCCCCcEEccCeEECCCCEECCCc
Q 015259 236 SPLAGK-KQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRLT--SP--NLLASGDGTKNATIIGDVYVHPSAKIHPTA 308 (410)
Q Consensus 236 ~~l~~~-~~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~~~~~--~~--~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~ 308 (410)
+.+++. ..+++|..+|+ |+++++++||..++..+..+.... .+ .++. +....+.+++.||+++.|++++
T Consensus 203 ~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~----~~~~~i~~~~~ig~~~~i~~~~ 278 (458)
T PRK14354 203 EILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIID----PESTYIDADVEIGSDTVIEPGV 278 (458)
T ss_pred HHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeC----CCeEEECCCcEECCCCEEeCCe
Confidence 888755 47999998865 557789999999887665443321 11 1122 2246788889999999999999
Q ss_pred EECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcE
Q 015259 309 KIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVV 388 (410)
Q Consensus 309 ~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~ 388 (410)
.|.+++.||++|.|++++.|.+|+|+++|.|+ ++.+.+++|+++|.|++++.|..+ ++||+++.|++++.
T Consensus 279 ~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~~---------~~Ig~~~~i~~~~~ 348 (458)
T PRK14354 279 VIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRPG---------SVIGEEVKIGNFVE 348 (458)
T ss_pred EEecceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEecCC---------CEEeCCcEECCceE
Confidence 99999999999999999999999999999998 467888999999999999888865 77788887777777
Q ss_pred EcceEEcCCcEE
Q 015259 389 VTNSIVLPNKTL 400 (410)
Q Consensus 389 v~~~~v~~~~~v 400 (410)
+.++.|++++.+
T Consensus 349 i~~~~i~~~~~i 360 (458)
T PRK14354 349 IKKSTIGEGTKV 360 (458)
T ss_pred EeeeEECCCCEe
Confidence 755555555443
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=315.77 Aligned_cols=323 Identities=23% Similarity=0.342 Sum_probs=241.2
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEee
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~ 84 (410)
|+||||||| .|+||++ .+||+|+|++|+|||+|+|+.+.+ ++|+..+..+.+.+++.. .+.++.
T Consensus 1 m~avIlA~G--~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~~~i~vv~~~~~~~i~~~~~~-------~~~~~~ 68 (448)
T PRK14357 1 MRALVLAAG--KGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVAQKVGVVLGHEAELVKKLLPE-------WVKIFL 68 (448)
T ss_pred CeEEEECCC--CCccCCC---CCCceeeEECCeeHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhccc-------ccEEEe
Confidence 689999999 9999986 789999999999999999999986 777777766777766542 245566
Q ss_pred CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 85 ~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
+....|++++++.+++++.. .++|++++||.+ .+.++.++++.|+++++++++++++. +++..|+.+..+ ++
T Consensus 69 ~~~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~--~~~~~~g~v~~d--~g 142 (448)
T PRK14357 69 QEEQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL--EDPTGYGRIIRD--GG 142 (448)
T ss_pred cCCCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc--CCCCCcEEEEEc--CC
Confidence 67788999999999998852 378999999984 46678999999988888889988887 567789988776 46
Q ss_pred cEEEEecCCCCc----cccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhcc
Q 015259 163 ELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (410)
Q Consensus 163 ~v~~i~ekp~~~----~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (410)
++ .+.|++... ...+.++|+|+|++++| +.++...... ....+.+ .|+++.
T Consensus 143 ~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~----------------------~~~~~~~-~d~i~~ 198 (448)
T PRK14357 143 KY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNEN----------------------AKGEYYL-TDAVNF 198 (448)
T ss_pred eE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCC----------------------CCCeEEH-HHHHHh
Confidence 77 666754322 13588999999999985 5555421110 1133445 688877
Q ss_pred ccCCCceeEEeccce--eeecCCccchhhhhHHHHhh----hhhcCCCcccCCCCCCCcEEccCeEECCCCEECCCcEEC
Q 015259 238 LAGKKQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQ----FRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIG 311 (410)
Q Consensus 238 l~~~~~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~ 311 (410)
+ .+++.|...++ |..+++++++..+...+... +......++.+ ....+.+++.||+++.|++++.|+
T Consensus 199 ~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~Ig~~~~i~~~~~I~ 271 (448)
T PRK14357 199 A---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDP----NTTYIHYDVEIGMDTIIYPMTFIE 271 (448)
T ss_pred h---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCC----CcEEEccceEECCCcEEcCCcEEE
Confidence 6 24788888888 56667999888776655432 11111222222 245778888899999999999998
Q ss_pred CCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc
Q 015259 312 PNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 312 ~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
+++.||++|+|+++|.|.+|+||++|.|. .+.+.+++|++++.|++++.|..+ ++||+++.|++++.+.
T Consensus 272 ~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~---------~~ig~~~~Ig~~~~i~ 340 (448)
T PRK14357 272 GKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREG---------TVLKKSVKIGNFVEIK 340 (448)
T ss_pred eeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCc---------ccccCCcEecCceeee
Confidence 88999999999999999999999999885 457778888888888888887655 5666666666555443
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=304.59 Aligned_cols=339 Identities=21% Similarity=0.374 Sum_probs=252.7
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
+.+|||||| .|+||++ .+||+|+|++|+|||+|+|+.|.+ ++|++.+..+.+.+++++. + .+.++
T Consensus 2 ~~~iIlAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~----~-~i~~v 71 (450)
T PRK14360 2 LAVAILAAG--KGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL----P-GLEFV 71 (450)
T ss_pred ceEEEEeCC--CCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc----C-CeEEE
Confidence 679999999 9999986 789999999999999999999986 5566566666777776531 1 46666
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
.+....|++++++.+++++... .+++++++||.+ .+.++.++++.|++.+++++++..+. .++..|+.+..| ++
T Consensus 72 ~~~~~~G~~~sv~~~~~~l~~~-~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d-~~ 147 (450)
T PRK14360 72 EQQPQLGTGHAVQQLLPVLKGF-EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL--PNPKGYGRVFCD-GN 147 (450)
T ss_pred EeCCcCCcHHHHHHHHHHhhcc-CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec--CCCCCccEEEEC-CC
Confidence 6677789999999999888522 357999999985 35679999999988888877776665 456679998887 67
Q ss_pred CcEEEEecCCC----CccccceeeeEEEEcHHHHHH-hhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhc
Q 015259 162 NELLHYTEKPE----TFVSDLINCGVYVFTPDIFNA-IQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILS 236 (410)
Q Consensus 162 ~~v~~i~ekp~----~~~~~l~~~Giy~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 236 (410)
++|..+.|||. ...+.++++|+|+|+++.|.. +++..... ....+.+ .|.++
T Consensus 148 g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~----------------------~~~e~~~-td~i~ 204 (450)
T PRK14360 148 NLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNN----------------------DQKEYYL-TDTVS 204 (450)
T ss_pred CCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccc----------------------cCCceeH-HHHHH
Confidence 89999999874 234678999999999977643 43322110 0122334 67777
Q ss_pred cccCCCceeEEeccce--eeecCCccchhhhhHHHHhhhh----hcCCCcccCCCCCCCcEEccCeEECCCCEECCCcEE
Q 015259 237 PLAGKKQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFR----LTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKI 310 (410)
Q Consensus 237 ~l~~~~~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i 310 (410)
.+. .+..+...++ |..+++++++..+...+..... .....++.+ ....+.+++++++++.|++++.|
T Consensus 205 ~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~----~~~~i~~~~~ig~~~~i~~~~~i 277 (450)
T PRK14360 205 LLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDP----ASCTISETVELGPDVIIEPQTHL 277 (450)
T ss_pred HHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecC----CeEEEeCCEEECCCCEECCCCEE
Confidence 663 2455656655 4559999999888877654322 221222222 13457788899999999999999
Q ss_pred CCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc
Q 015259 311 GPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 311 ~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
.+++.||++|.|++++.|.+|+|+++|.|+ ++.+.+++|+++|.|++++.|.++ ++||++|.|++++.+.
T Consensus 278 ~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~~---------~~Ig~~~~Ig~~~~i~ 347 (450)
T PRK14360 278 RGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRPE---------AQIGSNCRIGNFVEIK 347 (450)
T ss_pred eCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECCC---------CEEeCceEECCCEEEe
Confidence 989999999999999999999999999985 567788888888888888888765 7788888887777776
Q ss_pred ceEEcCCcEEc
Q 015259 391 NSIVLPNKTLN 401 (410)
Q Consensus 391 ~~~v~~~~~v~ 401 (410)
+++|++++.|.
T Consensus 348 ~~~i~~~~~i~ 358 (450)
T PRK14360 348 KSQLGEGSKVN 358 (450)
T ss_pred ccccCCCcEec
Confidence 65555555443
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=285.31 Aligned_cols=234 Identities=18% Similarity=0.250 Sum_probs=191.0
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhc-------
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS------- 73 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~------- 73 (410)
|.+|+||||||| .|+||+|+|..+||||+||+|+|+|+|+|+.+.. |+|++.+..+.+.+|+....
T Consensus 1 ~~~mkavILAaG--~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~ 78 (297)
T TIGR01105 1 MTNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLE 78 (297)
T ss_pred CCceEEEEECCC--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHH
Confidence 457999999999 9999999999999999999999999999999987 77777777788888886421
Q ss_pred --------------ccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--------CChHHHHHHHH
Q 015259 74 --------------NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHR 131 (410)
Q Consensus 74 --------------~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--------~~l~~~l~~~~ 131 (410)
..++.+++++.|.+..|++++++++++++. +++|++++||.+++ .++.++++.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~---~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~ 155 (297)
T TIGR01105 79 QRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVG---DNPFVVVLPDIIIDDATADPLRYNLAAMIARFN 155 (297)
T ss_pred HhcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhC---CCCEEEEECCeeccccccccchhHHHHHHHHHH
Confidence 024567888889999999999999999996 36899999999886 48999999997
Q ss_pred hcCCceEEEEEecCcccccccceEEEcC---CCCc---EEEEecCCCCc---cccceeeeEEEEcHHHHHHhhhcccccc
Q 015259 132 NYGGMGTILVIKVSAESASQFGELVADP---DTNE---LLHYTEKPETF---VSDLINCGVYVFTPDIFNAIQGVSSQRK 202 (410)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~~~~v~~d~---~~~~---v~~i~ekp~~~---~~~l~~~Giy~~~~~~~~~l~~~~~~~~ 202 (410)
++++.++++.... +++.+||++..+. ++++ |..+.|||..+ .++++++|+|+|++++|+.+......
T Consensus 156 ~~~~~~~~~~~~~--~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~-- 231 (297)
T TIGR01105 156 ETGRSQVLAKRMP--GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPG-- 231 (297)
T ss_pred HhCCcEEEEEEcC--CCCccceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCC--
Confidence 7666654443332 4578999998831 2454 58888998643 47899999999999999988653211
Q ss_pred cchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 203 DRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
..+.+++ .|+++.++++++++++...|+|+|+|+|++|++||..+.
T Consensus 232 ---------------------~~ge~~l-td~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 232 ---------------------AWGRIQL-TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred ---------------------CCCeeeH-HHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1134456 799999999899999999999999999999999998874
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=276.51 Aligned_cols=247 Identities=53% Similarity=1.005 Sum_probs=199.9
Q ss_pred EEEEecCCCC--CCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 11 AVIMVGGPTK--GTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 11 aiIlaaG~~~--g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
||||||| . |+||+|+|..+||||+|++|+|||+|+|+++.+ ++|++.+..+.+.+|+++..+.++..+.+
T Consensus 1 ~iIla~G--~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~ 78 (257)
T cd06428 1 AVILVGG--PQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRY 78 (257)
T ss_pred CEEEccC--CCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEE
Confidence 6899998 6 999999999999999999999999999999874 77888888889999998754456667777
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
+.+.+..|++++++.+++++....+++|+|++||++++.++.++++.|+++++++++++++.+.++...||++..|.+++
T Consensus 79 ~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g 158 (257)
T cd06428 79 LQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTG 158 (257)
T ss_pred ecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCC
Confidence 77777899999999999998533346899999999999999999999998888899888876545677899988873357
Q ss_pred cEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhh-ccCCCCCeeeeccchhccccCC
Q 015259 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSA-TRNLTTDFVRLDQDILSPLAGK 241 (410)
Q Consensus 163 ~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~d~l~~l~~~ 241 (410)
+|..+.|||....++++++|+|+|++++|+.+.+...... .++..+ .. .++...+++++..|+++.++++
T Consensus 159 ~v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~-----~e~~~~----~~~~~~~~~~~~~~~~d~~~~l~~~ 229 (257)
T cd06428 159 EVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQ-----QEAQLG----DDNNREGRAEVIRLEQDVLTPLAGS 229 (257)
T ss_pred eEEEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccc-----cccccc----cccccccccceeeehhhhhhHHhcc
Confidence 9999999998777889999999999999988875332110 011000 00 0000124566767999999988
Q ss_pred CceeEEeccceeeecCCccchhhhhHH
Q 015259 242 KQLYTYETMDFWEQIKTPGMSLKCSGL 268 (410)
Q Consensus 242 ~~i~~~~~~g~~~~i~t~~~~~~an~~ 268 (410)
+.+++|+++|+|.+|+|+++|+++|+.
T Consensus 230 ~~v~~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 230 GKLYVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred CCEEEecCCCeeecCCCHHHHHhHhhc
Confidence 899999999999999999999999975
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=276.55 Aligned_cols=232 Identities=19% Similarity=0.309 Sum_probs=197.1
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEE-ecccchHHHHHHHHhhcccCCcc
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYL-VGFYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~v-v~~~~~~~i~~~~~~~~~~~~~~ 79 (410)
|+.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+.|.. |++ ++++..+.+.++++++ ++|+++
T Consensus 1 m~~~kaIILAgG--~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g-~~~g~~ 77 (292)
T PRK15480 1 MKTRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDG-SQWGLN 77 (292)
T ss_pred CCceEEEEECCC--cccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCc-cccCce
Confidence 467999999999 9999999999999999999999999999999987 554 4556667889998875 568999
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
+.+..+..+.|+++++..+++++. .++++++.||.++ +.++.++++.|.+.+++++++..++ .++.+||++..|
T Consensus 78 i~y~~q~~~~Gta~Al~~a~~~i~---~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v--~~p~~yGvv~~d 152 (292)
T PRK15480 78 LQYKVQPSPDGLAQAFIIGEEFIG---GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHV--NDPERYGVVEFD 152 (292)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEc--CCcccCcEEEEC
Confidence 999988889999999999999995 2568888999764 8899999999988778888888877 677889999998
Q ss_pred CCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
++++|..+.|||..+.++++++|+|+|++++++.++..... ..+.+++ +|+++.+
T Consensus 153 -~~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~-----------------------~~ge~~i-td~~~~~ 207 (292)
T PRK15480 153 -QNGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPS-----------------------ARGELEI-TDINRIY 207 (292)
T ss_pred -CCCcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCC-----------------------CCCeeEh-HHHHHHH
Confidence 67899999999988889999999999999999888653211 1244567 8999988
Q ss_pred cCCCceeE-Eeccc-eeeecCCccchhhhhHHHH
Q 015259 239 AGKKQLYT-YETMD-FWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 239 ~~~~~i~~-~~~~g-~~~~i~t~~~~~~an~~~~ 270 (410)
++++.+.. +...| .|.|+||+++|.+|+..+.
T Consensus 208 l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 208 MEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred HhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 88876644 45567 4999999999999998776
|
|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=271.49 Aligned_cols=228 Identities=39% Similarity=0.717 Sum_probs=193.6
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|++|||||| .|+||+|+|...||+|+|++|+|||+|+++.+.+ ++|++.+..+.+.+++.+....++..+.+.
T Consensus 1 m~~iIlAaG--~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~ 78 (233)
T cd06425 1 MKALILVGG--YGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFS 78 (233)
T ss_pred CcEEEecCC--CccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEec
Confidence 689999999 9999999999999999999999999999999996 777777777888888876433455566666
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~ 163 (410)
.+.+..|++++++.+++++... .++|++++||++++.++.++++.|+++++++++++.+. +++..||++..+.++++
T Consensus 79 ~~~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d~~~~~ 155 (233)
T cd06425 79 IETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKV--EDPSKYGVVVHDENTGR 155 (233)
T ss_pred cCCCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEc--CCccccCeEEEcCCCCE
Confidence 5677899999999999998632 36799999999999999999999999889999998876 45678999998832689
Q ss_pred EEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCc
Q 015259 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243 (410)
Q Consensus 164 v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~ 243 (410)
|..+.|||....++++++|+|+|++++|+.+... ..++..++++.++++++
T Consensus 156 v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~-----------------------------~~~~~~~~~~~l~~~~~ 206 (233)
T cd06425 156 IERFVEKPKVFVGNKINAGIYILNPSVLDRIPLR-----------------------------PTSIEKEIFPKMASEGQ 206 (233)
T ss_pred EEEEEECCCCCCCCEEEEEEEEECHHHHHhcccC-----------------------------cccchhhhHHHHHhcCC
Confidence 9999999877678899999999999999887641 11233678888888889
Q ss_pred eeEEeccceeeecCCccchhhhhHHHH
Q 015259 244 LYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 244 i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
+++|+.+|+|.+++|+++|++|++.++
T Consensus 207 v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 207 LYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 999999999999999999999997653
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=273.96 Aligned_cols=234 Identities=19% Similarity=0.262 Sum_probs=191.6
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhc-------
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS------- 73 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~------- 73 (410)
|.+|+||||||| .|+||+|+|..+||||+||+|+|+|+|+|+++.+ |+|++++..+.+.+|+...+
T Consensus 1 ~~~mkavIlAaG--~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~ 78 (297)
T PRK10122 1 MTNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLE 78 (297)
T ss_pred CCceEEEEECCc--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHh
Confidence 468999999999 9999999999999999999999999999999997 78888888888888886311
Q ss_pred --------------ccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--------CChHHHHHHHH
Q 015259 74 --------------NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHR 131 (410)
Q Consensus 74 --------------~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--------~~l~~~l~~~~ 131 (410)
..++.++.++.|.+..|++++++++++++. +++|++++||.+++ .++.++++.|.
T Consensus 79 ~~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~---~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~ 155 (297)
T PRK10122 79 QRVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIG---DNPFVVVLPDVVIDDASADPLRYNLAAMIARFN 155 (297)
T ss_pred hcchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcC---CCCEEEEECCeeccCccccccchhHHHHHHHHH
Confidence 013456788888889999999999999995 36799999999875 47999999998
Q ss_pred hcCCceEEEEEecCcccccccceEEEcC---CCC---cEEEEecCCCCc---cccceeeeEEEEcHHHHHHhhhcccccc
Q 015259 132 NYGGMGTILVIKVSAESASQFGELVADP---DTN---ELLHYTEKPETF---VSDLINCGVYVFTPDIFNAIQGVSSQRK 202 (410)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~~~~v~~d~---~~~---~v~~i~ekp~~~---~~~l~~~Giy~~~~~~~~~l~~~~~~~~ 202 (410)
+.+++++++. ... ++...||++..+. +++ +|..+.|||..+ .++++++|+|+|++++|+.+.+....
T Consensus 156 ~~~~~~~~~~-~~~-~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~-- 231 (297)
T PRK10122 156 ETGRSQVLAK-RMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPG-- 231 (297)
T ss_pred HhCCcEEEEE-ECC-CCCCCceEEEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCC--
Confidence 8776644443 332 4678899998851 234 688999998644 37899999999999999988652211
Q ss_pred cchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 203 DRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
..+.+.+ .|+++.+++++++++|.++|+|+|+|+|++|++++..+.
T Consensus 232 ---------------------~~~e~~l-td~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 232 ---------------------AWGRIQL-TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred ---------------------CCCeeeH-HHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 1133445 799999998899999999999999999999999999883
|
|
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=270.26 Aligned_cols=233 Identities=32% Similarity=0.567 Sum_probs=192.8
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
|||||||| +|+||+|+|...||||+|++|+ |||+|+|++|.+ ++|++.+..+.+.+++++. ..++.++.+
T Consensus 1 kavIla~G--~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~-~~~~~~i~~ 77 (248)
T PF00483_consen 1 KAVILAGG--KGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSG-YKFGVKIEY 77 (248)
T ss_dssp EEEEEEES--CCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTS-GGGTEEEEE
T ss_pred CEEEECCC--CCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccc-cccccccee
Confidence 79999999 9999999999999999999999 999999999997 5566667788899999874 456778999
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccC-CCcEEEEcCCcccCCChHHHHHHHHhcCCc--eEEEEEecCcccccccceEEEcC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDN-PSHIFLLNCDVCCSFPLPEMLDAHRNYGGM--GTILVIKVSAESASQFGELVADP 159 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~-~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~--~~l~~~~~~~~~~~~~~~v~~d~ 159 (410)
+.+....|++++|+.+++++.... +++|++++||++++.++.++++.|++++++ +++...+. +++..||++..|
T Consensus 78 i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d- 154 (248)
T PF00483_consen 78 IVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV--EDPSRYGVVEVD- 154 (248)
T ss_dssp EEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES--SGGGGSEEEEEE-
T ss_pred eecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccc--cccccceeeeec-
Confidence 888888999999999999997432 245999999999999999999999998874 45444444 678889999999
Q ss_pred CCCcEEEEecCCCCcc-ccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 160 DTNELLHYTEKPETFV-SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 160 ~~~~v~~i~ekp~~~~-~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
++++|..|.|||.... +.++++|+|+|++++|+.+.+..... +.....+ .|+++.+
T Consensus 155 ~~~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~----------------------~~~~~~l-~d~i~~~ 211 (248)
T PF00483_consen 155 EDGRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKEN----------------------ARGEDFL-TDAIPKL 211 (248)
T ss_dssp TTSEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTC----------------------TTSSHHH-HHHHHHH
T ss_pred cceeEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhcc----------------------chhhhHH-HHHHHHH
Confidence 6789999999998766 88999999999999998884311110 1122223 8899999
Q ss_pred cCCC-ceeEEeccc--eeeecCCccchhhhhHHHHh
Q 015259 239 AGKK-QLYTYETMD--FWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 239 ~~~~-~i~~~~~~g--~~~~i~t~~~~~~an~~~~~ 271 (410)
++++ .+.++...+ +|.|||||++|++|++.+++
T Consensus 212 ~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 212 LEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 8776 566778888 79999999999999998764
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=263.24 Aligned_cols=228 Identities=22% Similarity=0.316 Sum_probs=189.9
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEec-ccchHHHHHHHHhhcccCCccEEE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~-~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+++.+ +++++ ++..+.+.++++.. +.|+.++.+
T Consensus 1 m~~iIlAaG--~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~-~~~~~~i~~ 77 (240)
T cd02538 1 MKGIILAGG--SGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDG-SDLGIRITY 77 (240)
T ss_pred CeEEEEcCc--CcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhcc-cccCceEEE
Confidence 689999999 9999999999999999999999999999999996 55554 44557888888764 467777877
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
..+....|++++++.++++++ .++|++++||.++ +.++.++++.|.+.++++++++.+. .++..||++..| ++
T Consensus 78 ~~~~~~~G~~~al~~a~~~~~---~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d-~~ 151 (240)
T cd02538 78 AVQPKPGGLAQAFIIGEEFIG---DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV--NDPERYGVVEFD-EN 151 (240)
T ss_pred eeCCCCCCHHHHHHHHHHhcC---CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC--CchhcCceEEec-CC
Confidence 777778899999999999986 3679999999875 6679999999988788888888877 456689999998 67
Q ss_pred CcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCC
Q 015259 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (410)
Q Consensus 162 ~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (410)
++|..+.|||....+.++++|+|+|++++|+.+.+.... ..+.+.+ .|+++.++++
T Consensus 152 g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~-----------------------~~~~~~l-~d~~~~l~~~ 207 (240)
T cd02538 152 GRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPS-----------------------ARGELEI-TDVNNEYLEK 207 (240)
T ss_pred CcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCC-----------------------CCCeEEh-HHHHHHHHHh
Confidence 799999999987778899999999999999888643211 0123445 7999999888
Q ss_pred CceeEEecc--ceeeecCCccchhhhhHHH
Q 015259 242 KQLYTYETM--DFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 242 ~~i~~~~~~--g~~~~i~t~~~~~~an~~~ 269 (410)
+++.++.+. |+|.+|+||++|.++++.+
T Consensus 208 g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 208 GKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred CCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 877777665 9999999999999999865
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=266.94 Aligned_cols=229 Identities=19% Similarity=0.303 Sum_probs=192.6
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEe-cccchHHHHHHHHhhcccCCccEEEe
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLV-GFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv-~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+.+.. |+|+ +++..+.+.+++..+ +.|++++.++
T Consensus 1 kaIILAgG--~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g-~~~g~~i~~~ 77 (286)
T TIGR01207 1 KGIILAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDG-SQWGVNLSYA 77 (286)
T ss_pred CEEEECCC--CCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhccc-cccCceEEEE
Confidence 58999999 9999999999999999999999999999999987 5544 456667888888764 5688899999
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc-cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC-CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i-~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
.+..+.|++++++.+++++. .++++++.||.+ ++.++.++++.|.+.++++++++.++ +++.+||++..| +++
T Consensus 78 ~q~~~~Gta~al~~a~~~l~---~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v--~~p~~yGvv~~d-~~g 151 (286)
T TIGR01207 78 VQPSPDGLAQAFIIGEDFIG---GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQV--SDPERYGVVEFD-SNG 151 (286)
T ss_pred EccCCCCHHHHHHHHHHHhC---CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEc--cCHHHCceEEEC-CCC
Confidence 88889999999999999996 367888899976 57889999999988778888888887 567889999998 678
Q ss_pred cEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC
Q 015259 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242 (410)
Q Consensus 163 ~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 242 (410)
+|..+.|||..+.++++++|+|+|++++++.+...... ..+.+++ .|+++.+++++
T Consensus 152 ~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~-----------------------~~ge~ei-tdv~~~~l~~g 207 (286)
T TIGR01207 152 RAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPS-----------------------ARGELEI-TDLNRVYLEEG 207 (286)
T ss_pred eEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCC-----------------------CCCcEeH-HHHHHHHHHcC
Confidence 99999999988889999999999999999888653211 1133445 79999998887
Q ss_pred ceeEEec-cce-eeecCCccchhhhhHHHHh
Q 015259 243 QLYTYET-MDF-WEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 243 ~i~~~~~-~g~-~~~i~t~~~~~~an~~~~~ 271 (410)
.+..+.. .|+ |.|++|+++|++|+..+..
T Consensus 208 ~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~~ 238 (286)
T TIGR01207 208 RLSVELLGRGYAWLDTGTHDSLLEASNFIQT 238 (286)
T ss_pred CcEEEEecCCCEEEeCCCHHHHHHHHHHHHH
Confidence 6655554 576 9999999999999977643
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=254.17 Aligned_cols=221 Identities=23% Similarity=0.400 Sum_probs=182.6
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc---cCCc---
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN---ELRI--- 78 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~---~~~~--- 78 (410)
+||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+ |+|++++..+.+.+++++... .+..
T Consensus 1 kavilaaG--~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 78 (254)
T TIGR02623 1 KAVILAGG--LGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMA 78 (254)
T ss_pred CEEEEcCc--cccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEec
Confidence 58999999 9999999999999999999999999999999987 778887778888888875311 1111
Q ss_pred --------------cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEec
Q 015259 79 --------------PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKV 144 (410)
Q Consensus 79 --------------~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~ 144 (410)
.+++..+.+..|++++++++++++. .++|++++||++++.++.++++.|.+.+++++++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~---~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~-- 153 (254)
T TIGR02623 79 DNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD---DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV-- 153 (254)
T ss_pred ccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC---CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe--
Confidence 1233444566899999999999985 478999999999999999999999988888887654
Q ss_pred CcccccccceEEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCC
Q 015259 145 SAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLT 224 (410)
Q Consensus 145 ~~~~~~~~~~v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (410)
.++..||++..| + ++|..|.|||... ++++++|+|+|++++|+.+.+.
T Consensus 154 --~~~~~yG~v~~d-~-~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~--------------------------- 201 (254)
T TIGR02623 154 --QPPGRFGALDLE-G-EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGD--------------------------- 201 (254)
T ss_pred --cCCCcccEEEEC-C-CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhcccc---------------------------
Confidence 345679999887 4 5899999998543 6789999999999999877531
Q ss_pred CCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 225 TDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 225 ~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
..++..|+++.+++++++++|..+|+|.+|+||++|.+++..+.+
T Consensus 202 --~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~ 246 (254)
T TIGR02623 202 --ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWES 246 (254)
T ss_pred --CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHc
Confidence 112337899999988899999999999999999999999887754
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=249.70 Aligned_cols=229 Identities=26% Similarity=0.416 Sum_probs=192.3
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|+||||||| .|+||+|+|...||+|+|++|+|||+|+++++.+ ++|++.+..+.+.+++++. .+|+.++.++
T Consensus 1 m~avIlAaG--~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~~ 77 (236)
T cd04189 1 MKGLILAGG--KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDG-SRFGVRITYI 77 (236)
T ss_pred CeEEEECCC--ccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEEE
Confidence 789999999 9999999999999999999999999999999986 7777777778888888764 3577778887
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~ 163 (410)
.+....|++++++.+++++. .+++++++||.+++.++.++++.|.+.+.++++++.+. .++..|+++..| +++
T Consensus 78 ~~~~~~g~~~sl~~a~~~i~---~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d--~~~ 150 (236)
T cd04189 78 LQEEPLGLAHAVLAARDFLG---DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEV--EDPRRFGVAVVD--DGR 150 (236)
T ss_pred ECCCCCChHHHHHHHHHhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEEC--CCcccceEEEEc--CCe
Confidence 77778899999999999885 36899999999999999999999988888888888876 455678888887 358
Q ss_pred EEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC-
Q 015259 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK- 242 (410)
Q Consensus 164 v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~- 242 (410)
|..+.+||....+.+.++|+|+|++++++.+...... ..+.+.+ .|+++.+++++
T Consensus 151 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~-----------------------~~~~~~~-~d~~~~~i~~g~ 206 (236)
T cd04189 151 IVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPS-----------------------WRGELEI-TDAIQWLIDRGR 206 (236)
T ss_pred EEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCC-----------------------CCCeEEH-HHHHHHHHHcCC
Confidence 9999999876667889999999999999877532111 0123445 78999888654
Q ss_pred ceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 243 QLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 243 ~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
.+.+++.+++|.+|+|+++|.++++.++.
T Consensus 207 ~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 207 RVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred cEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 69999999999999999999999988764
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=255.77 Aligned_cols=231 Identities=22% Similarity=0.293 Sum_probs=190.3
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccC-----
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL----- 76 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~----- 76 (410)
+.|+|||+||| .|+||+|+|..+||+|+|++|+|+|+|+|+.+.+ |+|++.+..+.+.++++.. ..|
T Consensus 7 ~~~~aiIlaaG--~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-~~~~~~l~ 83 (302)
T PRK13389 7 KVKKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTS-FELEAMLE 83 (302)
T ss_pred cceEEEEECCc--CCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccc-hhhhhhhh
Confidence 45899999999 9999999999999999999999999999999987 7788888888899998753 122
Q ss_pred -----------------CccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--------CChHHHHHHHH
Q 015259 77 -----------------RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHR 131 (410)
Q Consensus 77 -----------------~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--------~~l~~~l~~~~ 131 (410)
+..+.++.+.+..|++++++++++++. +++|+|++||.+++ .++.++++.|.
T Consensus 84 ~~~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~---~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~ 160 (302)
T PRK13389 84 KRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLAEMIRRFD 160 (302)
T ss_pred hhhhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcC---CCCEEEEeCcceecccccccccccHHHHHHHHH
Confidence 124556667778999999999999885 37899999999874 68999999998
Q ss_pred hcCCceEEEEEecCcccccccceEEEcC------CCCcEEEEecCCC--CccccceeeeEEEEcHHHHHHhhhccccccc
Q 015259 132 NYGGMGTILVIKVSAESASQFGELVADP------DTNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKD 203 (410)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~~~~v~~d~------~~~~v~~i~ekp~--~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~ 203 (410)
+.+++ ++++.+. +++..||++..+. ++++|..+.|||. ...++++++|+|+|++++|+.+......
T Consensus 161 ~~~~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~--- 234 (302)
T PRK13389 161 ETGHS-QIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPG--- 234 (302)
T ss_pred hcCCC-EEEEEEc--ccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCC---
Confidence 77765 6777666 6677899998762 1347999999986 3457899999999999999888653211
Q ss_pred chhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 204 RENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
..+.+.+ .|+++.+++++++++|...|+|.||+||++|++|+..+.
T Consensus 235 --------------------~~~e~~l-~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 235 --------------------AGDEIQL-TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred --------------------CCCeeeH-HHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 1133445 899999998889999999999999999999999998874
|
|
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=246.60 Aligned_cols=213 Identities=18% Similarity=0.296 Sum_probs=179.9
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEee
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~ 84 (410)
+||||||| .|+||+|+|..+||||+|++|+|||+|+|++|.+ |+|++.+..+.+.+++++ +.|+..+.+..
T Consensus 1 kaiIlaaG--~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~ 76 (221)
T cd06422 1 KAMILAAG--LGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISD 76 (221)
T ss_pred CEEEEcCC--CCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEec
Confidence 58999999 9999999999999999999999999999999997 778888888889998876 45777787776
Q ss_pred CC-CCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHh--cCCceEEEEEecCcccccccceEEEcCCC
Q 015259 85 ED-KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRN--YGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 85 ~~-~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
+. +..|++++++.+++++. .++|++++||++++.++.++++.|.+ .+..+++...+. +....|+.+..+ ++
T Consensus 77 ~~~~~~g~~~~l~~~~~~~~---~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d-~~ 150 (221)
T cd06422 77 EPDELLETGGGIKKALPLLG---DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRN--PGHNGVGDFSLD-AD 150 (221)
T ss_pred CCCcccccHHHHHHHHHhcC---CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEc--CCCCCcceEEEC-CC
Confidence 65 67899999999999985 36899999999999999999999973 455666665554 456678988888 67
Q ss_pred CcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCC
Q 015259 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (410)
Q Consensus 162 ~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (410)
++|..+.++|. ..++++|+|+|++++++.+.+. .+.+ .|+++.++++
T Consensus 151 ~~v~~~~~~~~---~~~~~~Giyi~~~~~l~~l~~~-----------------------------~~~~-~d~~~~l~~~ 197 (221)
T cd06422 151 GRLRRGGGGAV---APFTFTGIQILSPELFAGIPPG-----------------------------KFSL-NPLWDRAIAA 197 (221)
T ss_pred CcEeecccCCC---CceEEEEEEEEcHHHHhhCCcC-----------------------------cccH-HHHHHHHHHc
Confidence 78999988864 3789999999999998876531 1223 6889988888
Q ss_pred CceeEEeccceeeecCCccchhhh
Q 015259 242 KQLYTYETMDFWEQIKTPGMSLKC 265 (410)
Q Consensus 242 ~~i~~~~~~g~~~~i~t~~~~~~a 265 (410)
+.++++...|+|.+|+|+++|.+|
T Consensus 198 ~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 198 GRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred CCeEEEecCCEEEcCCCHHHHhhC
Confidence 899999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=253.35 Aligned_cols=232 Identities=23% Similarity=0.304 Sum_probs=186.3
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc------c--
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN------E-- 75 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~------~-- 75 (410)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+++.+ ++|++.+..+.+.+|++.... +
T Consensus 1 mkaiIlAaG--~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (267)
T cd02541 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKG 78 (267)
T ss_pred CeEEEEcCC--CCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcc
Confidence 689999999 9999999999999999999999999999999997 778888878888888854210 0
Q ss_pred ------------CCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCC---ChHHHHHHHHhcCCceEEE
Q 015259 76 ------------LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF---PLPEMLDAHRNYGGMGTIL 140 (410)
Q Consensus 76 ------------~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~---~l~~~l~~~~~~~~~~~l~ 140 (410)
.+.++.++.+....|++++++.+++++. .++|++++||.++.. ++.++++.|++.+++ +++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~ 154 (267)
T cd02541 79 KTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG---DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIA 154 (267)
T ss_pred cHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC---CCceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEE
Confidence 1345667777788999999999999986 368999999998743 499999999876655 455
Q ss_pred EEecCcccccccceEEEcCC---CCcEEEEecCCC--CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHh
Q 015259 141 VIKVSAESASQFGELVADPD---TNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEA 215 (410)
Q Consensus 141 ~~~~~~~~~~~~~~v~~d~~---~~~v~~i~ekp~--~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 215 (410)
+.....++...||++..|.. +++|..+.|||. ...+.++++|+|+|++++|+.+.+....
T Consensus 155 ~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~--------------- 219 (267)
T cd02541 155 VEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPG--------------- 219 (267)
T ss_pred EEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCC---------------
Confidence 55554446678999988731 248999999985 3557889999999999999887542110
Q ss_pred hhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 216 LQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 216 ~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
..+.+.+ .++++.+++++++++|++.|+|.+|+|+++|+++|+.+.
T Consensus 220 --------~~~e~~~-~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 220 --------KGGEIQL-TDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred --------CCCcEEH-HHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 1123345 799999998889999999999999999999999998764
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=251.11 Aligned_cols=227 Identities=25% Similarity=0.337 Sum_probs=182.1
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc---------
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN--------- 74 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~--------- 74 (410)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+++.+ ++|++.+..+.+.+|++....
T Consensus 1 m~avIlAaG--~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (260)
T TIGR01099 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRG 78 (260)
T ss_pred CeEEEEccc--CcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhh
Confidence 689999999 9999999999999999999999999999999986 788888888888888863210
Q ss_pred -c---------C-CccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCC---ChHHHHHHHHhcCCceEEE
Q 015259 75 -E---------L-RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF---PLPEMLDAHRNYGGMGTIL 140 (410)
Q Consensus 75 -~---------~-~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~---~l~~~l~~~~~~~~~~~l~ 140 (410)
. . +..+.+..+.+..|++++++.+++++. .++|++++||.++.. ++.++++.|.+.++++ ++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~ 154 (260)
T TIGR01099 79 KEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVG---DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IA 154 (260)
T ss_pred hHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhC---CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EE
Confidence 0 0 124556667778999999999999884 478999999999743 6999999998877775 55
Q ss_pred EEecCcccccccceEEEcC---CCCcEEEEecCCC--CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHh
Q 015259 141 VIKVSAESASQFGELVADP---DTNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEA 215 (410)
Q Consensus 141 ~~~~~~~~~~~~~~v~~d~---~~~~v~~i~ekp~--~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 215 (410)
+.....++...||++..+. ++++|..+.|||. ...++++++|+|+|++++|+.+......
T Consensus 155 ~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~--------------- 219 (260)
T TIGR01099 155 VEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPG--------------- 219 (260)
T ss_pred EEECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCC---------------
Confidence 5555435677899988862 2368999999984 3457789999999999999888542211
Q ss_pred hhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhh
Q 015259 216 LQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (410)
Q Consensus 216 ~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~a 265 (410)
..+.+.+ .|+++.+++++.+++|+++|+|.+|+|+++|+++
T Consensus 220 --------~~~~~~l-~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 220 --------AGGEIQL-TDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred --------CCCceeH-HHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 1133445 7899999888899999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-31 Score=238.24 Aligned_cols=218 Identities=28% Similarity=0.471 Sum_probs=182.0
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
||||||| .|+||+|+|...||+|+|++|+|||+|+++.+.+ ++|++.+..+.+.+++... ..++.++.+..+
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 77 (223)
T cd06915 1 AVILAGG--LGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIE 77 (223)
T ss_pred CEEecCC--cccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEEC
Confidence 6999999 9999999999999999999999999999999886 7777777777788887642 235556666666
Q ss_pred CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCcEE
Q 015259 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (410)
Q Consensus 86 ~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~v~ 165 (410)
....|++++++.+++.+. .++|++++||++++.++.++++.|++.+.++++++.+. ++...|+.+..+ ++++|.
T Consensus 78 ~~~~G~~~~l~~a~~~~~---~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~v~~d-~~~~v~ 151 (223)
T cd06915 78 PEPLGTGGAIKNALPKLP---EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRV--PDASRYGNVTVD-GDGRVI 151 (223)
T ss_pred CCCCcchHHHHHHHhhcC---CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEEC--CCCCcceeEEEC-CCCeEE
Confidence 778899999999999884 37899999999998899999999988778888888776 455678888888 568999
Q ss_pred EEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCcee
Q 015259 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245 (410)
Q Consensus 166 ~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~ 245 (410)
.+.++|....+.+.++|+|+|++++|+.+.... +.+..++++.+++++++.
T Consensus 152 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~~-----------------------------~~~~~~~~~~l~~~~~v~ 202 (223)
T cd06915 152 AFVEKGPGAAPGLINGGVYLLRKEILAEIPADA-----------------------------FSLEADVLPALVKRGRLY 202 (223)
T ss_pred EEEeCCCCCCCCcEEEEEEEECHHHHhhCCccC-----------------------------CChHHHHHHHHHhcCcEE
Confidence 999987765678999999999999988765320 112268888888777999
Q ss_pred EEeccceeeecCCccchhhhh
Q 015259 246 TYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 246 ~~~~~g~~~~i~t~~~~~~an 266 (410)
+|+..++|.+|+|++||.+|+
T Consensus 203 ~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 203 GFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred EEecCCeEEecCCHHHHHhhC
Confidence 999999999999999998873
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-31 Score=237.65 Aligned_cols=214 Identities=29% Similarity=0.540 Sum_probs=178.8
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
||||||| +|+||+|+|...||+|+|++|+|||+|+|+.|.+ ++|++.+..+.+.+++.+. .+|+.++.++.+
T Consensus 1 ~vIlaaG--~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~~ 77 (220)
T cd06426 1 VVIMAGG--KGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVRE 77 (220)
T ss_pred CEEecCC--CccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-cccCccEEEEEC
Confidence 6899999 9999999999999999999999999999999986 7788888778888888763 356777777776
Q ss_pred CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCcEE
Q 015259 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (410)
Q Consensus 86 ~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~v~ 165 (410)
....|+++++..+.+.. .++|++++||.+++.++..+++.|++.+.++++++... .....|+++..| + ++|.
T Consensus 78 ~~~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d-~-~~v~ 149 (220)
T cd06426 78 DKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREY--EVQVPYGVVETE-G-GRIT 149 (220)
T ss_pred CCCCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEc--CCCCcceEEEEC-C-CEEE
Confidence 67789999998777655 37899999999998999999999988888888887765 344568988887 4 7999
Q ss_pred EEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC-ce
Q 015259 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK-QL 244 (410)
Q Consensus 166 ~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~-~i 244 (410)
.+.|+|.. +.++++|+|+|++++++.+.+. .++++ .++++.+++++ .+
T Consensus 150 ~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~~----------------------------~~~~l-~~~~~~~i~~~~~i 198 (220)
T cd06426 150 SIEEKPTH--SFLVNAGIYVLEPEVLDLIPKN----------------------------EFFDM-PDLIEKLIKEGKKV 198 (220)
T ss_pred EEEECCCC--CCeEEEEEEEEcHHHHhhcCCC----------------------------CCcCH-HHHHHHHHHCCCcE
Confidence 99998754 5788999999999998876421 22334 78888887664 69
Q ss_pred eEEeccceeeecCCccchhhhh
Q 015259 245 YTYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 245 ~~~~~~g~~~~i~t~~~~~~an 266 (410)
.+|+.+|+|.+++|+++|.+||
T Consensus 199 ~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 199 GVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred EEEEeCCeEEeCCCHHHHHhhC
Confidence 9999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=240.31 Aligned_cols=221 Identities=24% Similarity=0.427 Sum_probs=179.4
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc---cCCc----
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN---ELRI---- 78 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~---~~~~---- 78 (410)
||||||| +|+||+|+|..+||||+|++|+|||+|+++.+.+ |+|++++..+.+.+++++..+ .|..
T Consensus 1 aiilaaG--~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 78 (253)
T cd02524 1 VVILAGG--LGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGT 78 (253)
T ss_pred CEEEecC--CccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecc
Confidence 6899999 9999999999999999999999999999999997 777887888889999876321 1211
Q ss_pred -cEEEee------------CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecC
Q 015259 79 -PVRYLR------------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVS 145 (410)
Q Consensus 79 -~i~~i~------------~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~ 145 (410)
++.+.. +....|++++++++++++.. +++|++++||++++.++.++++.|...+++++++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~--~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~-- 154 (253)
T cd02524 79 NRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD--DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH-- 154 (253)
T ss_pred cceeeecccccccceeecccCcccccHHHHHHHHHhcCC--CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--
Confidence 011122 22356799999999999852 2689999999999999999999998888888877653
Q ss_pred cccccccceEEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCC
Q 015259 146 AESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225 (410)
Q Consensus 146 ~~~~~~~~~v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (410)
....|+++..| ++++|..+.+||... +.++++|+|+|++++++.+...
T Consensus 155 --~~~~~g~v~~d-~~g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~---------------------------- 202 (253)
T cd02524 155 --PPGRFGELDLD-DDGQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGD---------------------------- 202 (253)
T ss_pred --CCCcccEEEEC-CCCCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccc----------------------------
Confidence 34578999988 678999999998653 5689999999999998877542
Q ss_pred CeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 226 ~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
..++..|+++.+++++++++|...|+|.+|+|+++|.++...+.
T Consensus 203 -~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~ 246 (253)
T cd02524 203 -DTVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWN 246 (253)
T ss_pred -cchhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHH
Confidence 01122789999998889999999999999999999999997664
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=231.99 Aligned_cols=212 Identities=33% Similarity=0.566 Sum_probs=179.8
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+ ++|++.+..+.+.+++.+. ..|+..+.++.+
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~~ 77 (217)
T cd04181 1 AVILAAG--KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVVQ 77 (217)
T ss_pred CEEecCC--ccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEeC
Confidence 6999999 9999999999999999999999999999999987 7777777777888887753 236677888777
Q ss_pred CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCcEE
Q 015259 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (410)
Q Consensus 86 ~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~v~ 165 (410)
....|++++++.+++++. .++|++++||++++.++.++++.|.++++++++++.+. +....|+++..| ++++|.
T Consensus 78 ~~~~g~~~al~~~~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~d-~~~~v~ 151 (217)
T cd04181 78 EEPLGTAGAVRNAEDFLG---DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEV--EDPSRYGVVELD-DDGRVT 151 (217)
T ss_pred CCCCccHHHHHHhhhhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEc--CCCCcceEEEEc-CCCcEE
Confidence 777899999999999883 47999999999999999999999998888889888876 466789999888 568999
Q ss_pred EEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCcee
Q 015259 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245 (410)
Q Consensus 166 ~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~ 245 (410)
.+.|||....+.+.++|+|+|++++++.+.+... ... .+..++++.++++++++
T Consensus 152 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~-------------------------~~~-~~~~~~~~~l~~~~~v~ 205 (217)
T cd04181 152 RFVEKPTLPESNLANAGIYIFEPEILDYIPEILP-------------------------RGE-DELTDAIPLLIEEGKVY 205 (217)
T ss_pred EEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCC-------------------------ccc-ccHHHHHHHHHhcCCEE
Confidence 9999987666789999999999999988765321 011 22278999998888999
Q ss_pred EEeccceeeecC
Q 015259 246 TYETMDFWEQIK 257 (410)
Q Consensus 246 ~~~~~g~~~~i~ 257 (410)
+++.+|+|.+++
T Consensus 206 ~~~~~g~w~dig 217 (217)
T cd04181 206 GYPVDGYWLDIG 217 (217)
T ss_pred EEEcCCEEecCC
Confidence 999999999985
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=225.00 Aligned_cols=238 Identities=22% Similarity=0.298 Sum_probs=197.8
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhc------
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS------ 73 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~------ 73 (410)
|++.++|||+||| .||||.|.|+..||-||||.++|+|+|+++.+.. +++|++...+.+++|+....
T Consensus 1 ~~~irKAViPaAG--lGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L 78 (291)
T COG1210 1 MMKIRKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTL 78 (291)
T ss_pred CCcccEEEEEccC--cccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHH
Confidence 3457899999999 9999999999999999999999999999999887 77777666667777765420
Q ss_pred ------------ccC--CccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCC---ChHHHHHHHHhcCCc
Q 015259 74 ------------NEL--RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF---PLPEMLDAHRNYGGM 136 (410)
Q Consensus 74 ------------~~~--~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~---~l~~~l~~~~~~~~~ 136 (410)
++. ..++.|++|.++.|.++|+++|++++. +++|.|+.+|.++.. .+.++++.+.+.+..
T Consensus 79 ~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg---~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s 155 (291)
T COG1210 79 EKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVG---DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGS 155 (291)
T ss_pred HHhCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcC---CCceEEEeCCeeecCCchHHHHHHHHHHHhCCc
Confidence 111 236788999999999999999999998 589999999998643 388999999887776
Q ss_pred eEEEEEecCcccccccceEE----EcCCCCcEEEEecCC--CCccccceeeeEEEEcHHHHHHhhhcccccccchhhhcc
Q 015259 137 GTILVIKVSAESASQFGELV----ADPDTNELLHYTEKP--ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRV 210 (410)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~v~----~d~~~~~v~~i~ekp--~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~ 210 (410)
++.+.++++++.+.||++. .+..-.+|..+.||| ++..|+++-.|-|+|+|++|+.|++....
T Consensus 156 -vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G---------- 224 (291)
T COG1210 156 -VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPG---------- 224 (291)
T ss_pred -EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCC----------
Confidence 6677788778889999987 331124899999998 46789999999999999999999874321
Q ss_pred chhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhh
Q 015259 211 SSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQ 272 (410)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~ 272 (410)
..+...| +|.+..|++...+++|.+.|..+|+|++..|++|+..|..+
T Consensus 225 -------------~ggEiQL-TDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~ 272 (291)
T COG1210 225 -------------AGGEIQL-TDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALR 272 (291)
T ss_pred -------------CCCEeeH-HHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhh
Confidence 1255567 99999999999999999999999999999999999888654
|
|
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-28 Score=215.03 Aligned_cols=176 Identities=23% Similarity=0.440 Sum_probs=142.3
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCC-----c
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELR-----I 78 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~-----~ 78 (410)
++||||||| .|+||+|+|..+||||+|++|+|||+|+|+++.+ |+|++.+..+.+.+|+++. ..|+ .
T Consensus 1 ~~aiIla~G--~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~-~~~~~~~~~~ 77 (217)
T cd04197 1 LQAVVLADS--FNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKS-KWSKPKSSLM 77 (217)
T ss_pred CeEEEEcCC--CcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhc-cccccccCcc
Confidence 589999999 9999999999999999999999999999999987 7777777888999999874 3343 3
Q ss_pred cEEEeeCCCCCCcHHHHHHh--HHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhc-----CCceEEEEEecCcccc--
Q 015259 79 PVRYLREDKPHGSAGALYNF--RDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNY-----GGMGTILVIKVSAESA-- 149 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~--~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~-----~~~~~l~~~~~~~~~~-- 149 (410)
.+.++.+.+..|++++++.. +..+ .++|++++||++++.++.++++.|++. ++++|+++++...+..
T Consensus 78 ~i~~~~~~~~~~~~~al~~~~~~~~~----~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~ 153 (217)
T cd04197 78 IVIIIMSEDCRSLGDALRDLDAKGLI----RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTR 153 (217)
T ss_pred eEEEEeCCCcCccchHHHHHhhcccc----CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccc
Confidence 46666666777888888643 3334 368999999999999999999999873 7888988888743321
Q ss_pred --cccceEEEcCCCCcEEEEecCCCCc--------------------cccceeeeEEEEcHHHH
Q 015259 150 --SQFGELVADPDTNELLHYTEKPETF--------------------VSDLINCGVYVFTPDIF 191 (410)
Q Consensus 150 --~~~~~v~~d~~~~~v~~i~ekp~~~--------------------~~~l~~~Giy~~~~~~~ 191 (410)
..++++..|+++++|+.+.|||..+ ++++.++|+|+|+++++
T Consensus 154 ~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 154 RTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred cCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 2356788874458999999987532 38999999999999864
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=213.41 Aligned_cols=221 Identities=21% Similarity=0.314 Sum_probs=162.5
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
||||||| .|+||+|+|..+||+|+|++|+|||+|+|+.+.+ |+|++.+..+.+.++++.. .+..+.+..+
T Consensus 1 aiIlAaG--~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~ 75 (229)
T cd02523 1 AIILAAG--RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPD 75 (229)
T ss_pred CEEEecc--CccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcc
Confidence 6999999 9999999999999999999999999999999986 7777777778888887642 2333333333
Q ss_pred CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCcEE
Q 015259 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (410)
Q Consensus 86 ~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~v~ 165 (410)
....|++++++.+++++. ++|++++||++++. ++++.|.+.++++++++.+..+.....++....+ .+++.
T Consensus 76 ~~~~g~~~s~~~~~~~~~----~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 146 (229)
T cd02523 76 YAETNNIYSLYLARDFLD----EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDLDD--AGVLL 146 (229)
T ss_pred hhhhCcHHHHHHHHHHcC----CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeeecC--ccceE
Confidence 447899999999999883 78999999999854 5677777777888888876432333344433333 36788
Q ss_pred EEecCCCCcc-ccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC--
Q 015259 166 HYTEKPETFV-SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK-- 242 (410)
Q Consensus 166 ~i~ekp~~~~-~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~-- 242 (410)
.+.++|.... ..+.++|+|+|++++++.+.+......+. +.....+ +++++.++++.
T Consensus 147 ~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~-------------------~~~~~~~-~d~i~~l~~~~~~ 206 (229)
T cd02523 147 GIISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEA-------------------GRVNLYY-EDALQRLISEEGV 206 (229)
T ss_pred eecccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhc-------------------ccccccH-HHHHHHHHhhcCe
Confidence 8888875443 56889999999999988776533211100 0011223 78999888733
Q ss_pred ceeEEeccceeeecCCccchhhhh
Q 015259 243 QLYTYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 243 ~i~~~~~~g~~~~i~t~~~~~~an 266 (410)
.++.+.. ++|.+|+++++|.+|+
T Consensus 207 ~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 207 KVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred eEEEcCC-CCEEEeCCHHHHHhhC
Confidence 4555555 8999999999998863
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=206.28 Aligned_cols=218 Identities=21% Similarity=0.327 Sum_probs=159.6
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccch---HHHHHHHHhhcccCCccEEE
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEE---REFALYVSSISNELRIPVRY 82 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~---~~i~~~~~~~~~~~~~~i~~ 82 (410)
+|||||| +|+||+|+|..+||||+|++|+|||+|+|+.+.+ +++++.... ..+...+... ..+..+.+
T Consensus 1 ~iIlAaG--~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~~ 76 (231)
T cd04183 1 IIIPMAG--LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL--APNATVVE 76 (231)
T ss_pred CEEECCc--CCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEEE
Confidence 4899999 9999999999999999999999999999999987 555543221 1122222221 12334433
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
.+....|++++++.++..+.. .++|++++||++++.++.++++.|.+.+..+++++... ....|+.+..| +++
T Consensus 77 -~~~~~~g~~~~l~~a~~~l~~--~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~v~~d-~~~ 149 (231)
T cd04183 77 -LDGETLGAACTVLLAADLIDN--DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWSYVKLD-ENG 149 (231)
T ss_pred -eCCCCCcHHHHHHHHHhhcCC--CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeEEEEEC-CCC
Confidence 345688999999999998841 36899999999999999999998877666666666554 34468988888 678
Q ss_pred cEEEEecCCCCccccceeeeEEEEcHH-HH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 163 ELLHYTEKPETFVSDLINCGVYVFTPD-IF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 163 ~v~~i~ekp~~~~~~l~~~Giy~~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
+|..+.+|+. .+.+.++|+|+|+++ .| +.+.+...... + ..+.+.+ .++++.+++
T Consensus 150 ~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~-------------------~-~~~~~~~-~d~i~~~~~ 206 (231)
T cd04183 150 RVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDD-------------------S-VNGEFYI-SPLYNELIL 206 (231)
T ss_pred CEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcc-------------------c-ccCcEEE-hHHHHHHHH
Confidence 8999988743 467899999999987 43 55543211000 0 1122334 789999886
Q ss_pred CC-ceeEEec-cceeeecCCccch
Q 015259 241 KK-QLYTYET-MDFWEQIKTPGMS 262 (410)
Q Consensus 241 ~~-~i~~~~~-~g~~~~i~t~~~~ 262 (410)
++ .+.++.. .++|.+++||++|
T Consensus 207 ~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 207 DGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cCCEEEEEEeccccEEEcCChHhc
Confidence 65 6999998 6899999999987
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=203.05 Aligned_cols=182 Identities=27% Similarity=0.511 Sum_probs=146.8
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCcc-----
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP----- 79 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~----- 79 (410)
||||||| +|+||+|+|...||+|+|++|+ |||+|+++++.+ ++|++.+..+.+.+++++. ..|+.+
T Consensus 1 avILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 77 (200)
T cd02508 1 AIILAGG--EGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGG 77 (200)
T ss_pred CEEeCCC--CCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCC
Confidence 6899999 9999999999999999999999 999999999986 7888778788888888764 345443
Q ss_pred EEEee------CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccc
Q 015259 80 VRYLR------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 80 i~~i~------~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (410)
+.++. +.+..|++++++.+++++.....++|++++||++++.++.++++.|+++++.+++++.
T Consensus 78 ~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~----------- 146 (200)
T cd02508 78 LFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK----------- 146 (200)
T ss_pred EEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-----------
Confidence 34432 3567899999999999985333468999999999999999999999888777777653
Q ss_pred eEEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHHH-HhhhcccccccchhhhccchhHhhhhhccCCCCCeeeecc
Q 015259 154 ELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQ 232 (410)
Q Consensus 154 ~v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (410)
+++|+|+|++++|. .+..... .+.. ++..
T Consensus 147 -------------------------~~~g~yi~~~~~~~~~l~~~~~------------------------~~~~-~~~~ 176 (200)
T cd02508 147 -------------------------ASMGIYIFSKDLLIELLEEDAA------------------------DGSH-DFGK 176 (200)
T ss_pred -------------------------hcCEEEEEEHHHHHHHHHHHhc------------------------cCcc-hhHH
Confidence 77999999999984 4443211 0011 2338
Q ss_pred chhccccCCCceeEEeccceeeec
Q 015259 233 DILSPLAGKKQLYTYETMDFWEQI 256 (410)
Q Consensus 233 d~l~~l~~~~~i~~~~~~g~~~~i 256 (410)
|+++.+++++++++|+++|+|.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999988999999999999985
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=196.69 Aligned_cols=177 Identities=29% Similarity=0.486 Sum_probs=141.1
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccc-hHHHHHHHHhhc--ccCCccE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYE-EREFALYVSSIS--NELRIPV 80 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~-~~~i~~~~~~~~--~~~~~~i 80 (410)
|+||||||| +|+||+|+|...||+|+|++|+|||+|+++++.+ ++|++.+. .+.++++++... ......+
T Consensus 1 ~~aVILAgG--~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~ 78 (214)
T cd04198 1 FQAVILAGG--GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDE 78 (214)
T ss_pred CEEEEEeCC--CCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeE
Confidence 689999999 9999999999999999999999999999999997 66666653 456778776531 1112234
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcc-----------cc
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE-----------SA 149 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~-----------~~ 149 (410)
.+..+....|++++|+.+++.+. ++|++++||.+++.++.++++.|++.++.+|+++++.... ..
T Consensus 79 ~~~~~~~~~gt~~al~~~~~~i~----~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 154 (214)
T cd04198 79 VTIVLDEDMGTADSLRHIRKKIK----KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKA 154 (214)
T ss_pred EEecCCCCcChHHHHHHHHhhcC----CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCC
Confidence 45556788999999999999874 7899999999999999999999999889999998875311 12
Q ss_pred cccceEEEcCCCCcEEEEecCC-----------------C-CccccceeeeEEEEcHHHH
Q 015259 150 SQFGELVADPDTNELLHYTEKP-----------------E-TFVSDLINCGVYVFTPDIF 191 (410)
Q Consensus 150 ~~~~~v~~d~~~~~v~~i~ekp-----------------~-~~~~~l~~~Giy~~~~~~~ 191 (410)
..+.++..|+++++++.+.... . ..++++.++|+|+|+++++
T Consensus 155 ~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 155 DERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 3466788887788999887631 1 2468999999999998863
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-25 Score=195.21 Aligned_cols=177 Identities=27% Similarity=0.497 Sum_probs=136.4
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc---cCCc--
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN---ELRI-- 78 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~---~~~~-- 78 (410)
|+||||||| .|+||.|+|...||+|+|++|+|||+|+++++.+ ++|++.+..+.+.+++.+... ..+.
T Consensus 1 ~~avIlagg--~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v 78 (216)
T cd02507 1 FQAVVLADG--FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIV 78 (216)
T ss_pred CeEEEEeCC--CccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceE
Confidence 689999999 9999999999999999999999999999999986 777877777777777765321 1122
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHH--HHhcCCceEEEEEecCccc-------c
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDA--HRNYGGMGTILVIKVSAES-------A 149 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~--~~~~~~~~~l~~~~~~~~~-------~ 149 (410)
.+.+..+.+..|++++++.+++.+. ++|++++||++++.++.++++. +...++++++++....... .
T Consensus 79 ~~~~~~~~~~~Gta~~l~~~~~~i~----~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (216)
T cd02507 79 DVITSDLCESAGDALRLRDIRGLIR----SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKT 154 (216)
T ss_pred EEEEccCCCCCccHHHHHHHhhcCC----CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccC
Confidence 3334455678999999999999885 7899999999999999999965 4444566665555543222 4
Q ss_pred cccceEEEcCCC--CcEEEEecCCCC------------------ccccceeeeEEEEcHHHH
Q 015259 150 SQFGELVADPDT--NELLHYTEKPET------------------FVSDLINCGVYVFTPDIF 191 (410)
Q Consensus 150 ~~~~~v~~d~~~--~~v~~i~ekp~~------------------~~~~l~~~Giy~~~~~~~ 191 (410)
..++++..|+++ .+++.+.++++. .++++.++|+|+|+++++
T Consensus 155 ~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 155 EEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 457888888555 466666665432 368999999999999863
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=192.96 Aligned_cols=181 Identities=19% Similarity=0.258 Sum_probs=136.8
Q ss_pred eEEEEEecCCCCCCccccCCC-CCCccccccCC-ccchhhhHhhccc------EEEecccc-hHHHHHHHHhhcccCCcc
Q 015259 9 VVAVIMVGGPTKGTRFRPLSL-NIPKPLFPLGG-QPMVHHPISACKR------IYLVGFYE-EREFALYVSSISNELRIP 79 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~-~~pK~llpi~g-~pli~~~l~~l~~------i~vv~~~~-~~~i~~~~~~~~~~~~~~ 79 (410)
|++|||||| .|+||+|+|. .+||+|+|++| +|||+|+++++.. ++|++.+. .+.+.+++++ ....
T Consensus 1 m~~vILAgG--~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~ 74 (274)
T cd02509 1 IYPVILAGG--SGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPE 74 (274)
T ss_pred CEEEEEccc--ccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCC
Confidence 689999999 9999999996 79999999999 9999999999875 66666643 3455666543 2235
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhccc-CCCcEEEEcCCcccC--CChHHHHHHHHh---cCCceEEEEEecCcccccccc
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMED-NPSHIFLLNCDVCCS--FPLPEMLDAHRN---YGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~-~~~~~lvl~~D~i~~--~~l~~~l~~~~~---~~~~~~l~~~~~~~~~~~~~~ 153 (410)
+.++.+....||++++..++.++... .++.++|++||+++. .++.++++.+.+ .+..+|+.+.+. ...+.||
T Consensus 75 ~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~--~~~t~yG 152 (274)
T cd02509 75 ENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPT--RPETGYG 152 (274)
T ss_pred ceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeec--CCCCCeE
Confidence 67777778899999999998887532 246789999999875 457777765443 456777777665 4457899
Q ss_pred eEEEcCCC--C---cEEEEecCCCCc--------cccceeeeEEEEcHHH-HHHhhhcc
Q 015259 154 ELVADPDT--N---ELLHYTEKPETF--------VSDLINCGVYVFTPDI-FNAIQGVS 198 (410)
Q Consensus 154 ~v~~d~~~--~---~v~~i~ekp~~~--------~~~l~~~Giy~~~~~~-~~~l~~~~ 198 (410)
++..+ ++ + +|..|.|||+.. ...+.++|+|+|+++. ++.|+...
T Consensus 153 yI~~~-~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~ 210 (274)
T cd02509 153 YIEAG-EKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHA 210 (274)
T ss_pred EEEeC-CcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHC
Confidence 99987 33 2 899999999632 1247899999999876 46666543
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=187.36 Aligned_cols=214 Identities=23% Similarity=0.383 Sum_probs=161.4
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
||||||| .|+||++ ..||+|+|++|+|||+|+++.+.+ +++++.+..+.+.++++. + .+.++.+
T Consensus 1 aiIlaaG--~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~----~--~~~~~~~ 69 (229)
T cd02540 1 AVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN----P--NVEFVLQ 69 (229)
T ss_pred CEEEeCC--CCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC----C--CcEEEEC
Confidence 6999999 9999986 789999999999999999999987 677776667777777653 2 3555666
Q ss_pred CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCc
Q 015259 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (410)
Q Consensus 86 ~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~ 163 (410)
....|++++++.+++++.. ..++|++++||.++ ..++.++++.|.+.++++++...+. +++..|+.+..+ ++++
T Consensus 70 ~~~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~-~~~~ 145 (229)
T cd02540 70 EEQLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAEL--EDPTGYGRIIRD-GNGK 145 (229)
T ss_pred CCCCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCCccEEEEc-CCCC
Confidence 6678999999999998853 23689999999953 5679999998887667777777666 456678887777 5678
Q ss_pred EEEEecCCCCc----cccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 164 LLHYTEKPETF----VSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 164 v~~i~ekp~~~----~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
|..+.+++... .+.+.++|+|+|+++. ++.++...... .+..+.+ .++++.+
T Consensus 146 v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~----------------------~~~~~~~-~d~~~~~ 202 (229)
T cd02540 146 VLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNN----------------------AQGEYYL-TDIIALA 202 (229)
T ss_pred EEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHccccc----------------------CCCcEEH-HHHHHHH
Confidence 99999876422 1367899999999875 46665432110 0122334 8999998
Q ss_pred cCCC-ceeEEeccce--eeecCCccch
Q 015259 239 AGKK-QLYTYETMDF--WEQIKTPGMS 262 (410)
Q Consensus 239 ~~~~-~i~~~~~~g~--~~~i~t~~~~ 262 (410)
++.+ .|+++..+|+ |+.++|+.++
T Consensus 203 ~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 203 VADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred HHCCCEEEEEEcCCcceEecCCChHhC
Confidence 8664 7999998765 7778888653
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=175.35 Aligned_cols=224 Identities=14% Similarity=0.223 Sum_probs=148.2
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEec-ccchHHHHHHHHhhcccCCcc
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~-~~~~~~i~~~~~~~~~~~~~~ 79 (410)
|..|+||||||| +|+||+| +.||||+.++|+|+|+|+|++|.+ ++||+ .+..+.+++++++. .+..+
T Consensus 1 ~~~~kavILAAG--~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~--~~~~~ 73 (239)
T COG1213 1 MHPMKAVILAAG--FGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKY--PFNAK 73 (239)
T ss_pred CCceeEEEEecc--cccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcC--CcceE
Confidence 346999999999 9999999 999999999999999999999998 56665 67778888888763 22234
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccc-cceEEEc
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQ-FGELVAD 158 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~v~~d 158 (410)
+.+...++..+++.||+.+++++. +.|++++||++++.. +++...+.++. ++.+...+...... -..+..
T Consensus 74 iv~N~~y~ktN~~~Sl~~akd~~~----~~fii~~sD~vye~~---~~e~l~~a~~~-~li~d~~~~~~~~~ea~kv~~- 144 (239)
T COG1213 74 IVINSDYEKTNTGYSLLLAKDYMD----GRFILVMSDHVYEPS---ILERLLEAPGE-GLIVDRRPRYVGVEEATKVKD- 144 (239)
T ss_pred EEeCCCcccCCceeEEeeehhhhc----CcEEEEeCCEeecHH---HHHHHHhCcCC-cEEEeccccccccCceeEEEe-
Confidence 444444566667999999999996 679999999999544 33333333333 23333321111111 112333
Q ss_pred CCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
+++++..+.++-. ..+..++|++.++.++|+.+.+...... .+.+ .++....
T Consensus 145 -e~G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~------------------------~~~~-~~~~~~~ 196 (239)
T COG1213 145 -EGGRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERS------------------------EYDY-REVEKEA 196 (239)
T ss_pred -cCCEEehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhh------------------------hHHH-HHHHHHh
Confidence 5789999987633 4677889999999998876655332110 0111 1222211
Q ss_pred -cCCCceeEEeccceeeecCCccchhhhhHHHHhhh
Q 015259 239 -AGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQF 273 (410)
Q Consensus 239 -~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~ 273 (410)
+....+.......+|++|+||||+.++...+....
T Consensus 197 ~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~ 232 (239)
T COG1213 197 GLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNI 232 (239)
T ss_pred CCceEEeeccccCceeEecCCHHHHHHHHHHHHHHH
Confidence 11111221211357999999999999988766543
|
|
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-22 Score=180.58 Aligned_cols=221 Identities=14% Similarity=0.147 Sum_probs=151.1
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
++.+|||||| .|+||. ||+|+|++|+|||+|+++.|.+ ++|++. .+.+.+++.. ++.++.+
T Consensus 2 ~~~~iIlA~g--~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~--~~~i~~~~~~----~~~~v~~ 67 (245)
T PRK05450 2 KFLIIIPARY--ASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATD--DERIADAVEA----FGGEVVM 67 (245)
T ss_pred ceEEEEecCC--CCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECC--cHHHHHHHHH----cCCEEEE
Confidence 5889999999 999994 5999999999999999999886 666654 2455555543 3445555
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEec-C---cccccccceEE
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV-S---AESASQFGELV 156 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~-~---~~~~~~~~~v~ 156 (410)
..+....|+++... +...+.....+.+++++||.++ ...+.++++.|...+.+++++..+. + ..++..++++
T Consensus 68 ~~~~~~~gt~~~~~-~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 145 (245)
T PRK05450 68 TSPDHPSGTDRIAE-AAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV- 145 (245)
T ss_pred CCCcCCCchHHHHH-HHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-
Confidence 44555556655433 3333321113568999999964 4568999998876656656555544 1 1234456654
Q ss_pred EcCCCCcEEEEecCCCC----------ccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCC
Q 015259 157 ADPDTNELLHYTEKPET----------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (410)
Q Consensus 157 ~d~~~~~v~~i~ekp~~----------~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (410)
+| ++++|+.|.++|.. ..+.+.++|+|+|++++++.+.+...... +
T Consensus 146 ~d-~~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~-----------------------~ 201 (245)
T PRK05450 146 LD-ADGRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPL-----------------------E 201 (245)
T ss_pred eC-CCCcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCcc-----------------------c
Confidence 77 67899999998731 23589999999999999988765321110 0
Q ss_pred eeeeccchhccccCCCceeEEeccc-eeeecCCccchhhhhHHH
Q 015259 227 FVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 227 ~~~l~~d~l~~l~~~~~i~~~~~~g-~~~~i~t~~~~~~an~~~ 269 (410)
.... .+.++.+.++..++++..+| +|.+||||+||.+|+..+
T Consensus 202 ~~~~-~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 202 KIES-LEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred cchh-HHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 0001 22233333556899999886 999999999999998654
|
|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=176.17 Aligned_cols=213 Identities=16% Similarity=0.182 Sum_probs=147.5
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+.+|||||| .|+||. ||+|+|++|+|||+|+++.+.+ |+|+..+ +.+.+++.+ ++.++.+
T Consensus 2 ~~~iIlA~g--~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~~ 67 (239)
T cd02517 2 VIVVIPARY--ASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVVM 67 (239)
T ss_pred EEEEEecCC--CCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEEE
Confidence 679999999 999995 5999999999999999999875 5666543 456666543 3444544
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhc-CCceEEEEEecCccccc---ccce--
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY-GGMGTILVIKVSAESAS---QFGE-- 154 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~-~~~~~l~~~~~~~~~~~---~~~~-- 154 (410)
..+....|+++ +..+.+.+.. ..+.|++++||.++ ..++..+++.|.+. +.++++++.+. .++. .++.
T Consensus 68 ~~~~~~~gt~~-~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 143 (239)
T cd02517 68 TSPDHPSGTDR-IAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPI--SDEEELFNPNVVK 143 (239)
T ss_pred cCcccCchhHH-HHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEc--CCHHHccCCCCCE
Confidence 44445567764 5556665641 12679999999853 56689999988765 56777777765 2222 3443
Q ss_pred EEEcCCCCcEEEEecCCC-------CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCe
Q 015259 155 LVADPDTNELLHYTEKPE-------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (410)
Q Consensus 155 v~~d~~~~~v~~i~ekp~-------~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (410)
+..+ ++++|+.|.+++. .+.+.++++|+|+|++++++.+.+... ..
T Consensus 144 v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~--------------------------~~ 196 (239)
T cd02517 144 VVLD-KDGYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPP--------------------------SP 196 (239)
T ss_pred EEEC-CCCCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCC--------------------------ch
Confidence 5555 4678988876542 124679999999999999987754211 00
Q ss_pred eeeccchhc--cccCC-CceeEEeccceeeecCCccchhhhhH
Q 015259 228 VRLDQDILS--PLAGK-KQLYTYETMDFWEQIKTPGMSLKCSG 267 (410)
Q Consensus 228 ~~l~~d~l~--~l~~~-~~i~~~~~~g~~~~i~t~~~~~~an~ 267 (410)
+++ .+.+. .++++ ..++++...+.|.+||||++|.++++
T Consensus 197 ~~~-~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 197 LEQ-IESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred hhh-hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 111 22322 23444 46999988889999999999998874
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=191.41 Aligned_cols=241 Identities=17% Similarity=0.246 Sum_probs=156.5
Q ss_pred eEEEEEecCCCCCCccccCCCC-CCccccccCC-ccchhhhHhhccc-----EEEecccch-HHHHHHHHhhcccCCcc-
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLN-IPKPLFPLGG-QPMVHHPISACKR-----IYLVGFYEE-REFALYVSSISNELRIP- 79 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~-~pK~llpi~g-~pli~~~l~~l~~-----i~vv~~~~~-~~i~~~~~~~~~~~~~~- 79 (410)
|.+|||||| .|+||+|+|.. +||+|+|+.| +|||+|+++.|.. ++|++.... ..+.+.+.. ++.+
T Consensus 1 ~~~vILAgG--~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~----~~~~~ 74 (468)
T TIGR01479 1 IIPVILAGG--SGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE----IGKLA 74 (468)
T ss_pred CEEEEecCc--ccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH----cCCCc
Confidence 579999999 99999999986 9999999977 8999999999976 556655322 234444432 3333
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcc--cCCCcEEEEcCCcccC--CChHHHHHHHH---hcCCceEEEEEecCccccccc
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIME--DNPSHIFLLNCDVCCS--FPLPEMLDAHR---NYGGMGTILVIKVSAESASQF 152 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~--~~~~~~lvl~~D~i~~--~~l~~~l~~~~---~~~~~~~l~~~~~~~~~~~~~ 152 (410)
..++.++...||++++..+..++.+ ..++.++|++||+++. .+|.++++.+. +.+..+++...+. ...+.|
T Consensus 75 ~~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~--~p~t~Y 152 (468)
T TIGR01479 75 SNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPT--HPETGY 152 (468)
T ss_pred ceEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCC--CCCCCc
Confidence 3577788889999999887766632 1234589999998764 34888887653 3344555555443 455789
Q ss_pred ceEEEcC-----CCCcEEEEecCCCCc--------cccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhh
Q 015259 153 GELVADP-----DTNELLHYTEKPETF--------VSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQS 218 (410)
Q Consensus 153 ~~v~~d~-----~~~~v~~i~ekp~~~--------~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 218 (410)
|++..+. +.++|..|.|||+.. ...++++|+|+|+++. ++.|.+......+.-.. .+.
T Consensus 153 GyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~-------~~~- 224 (468)
T TIGR01479 153 GYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEA-------AVE- 224 (468)
T ss_pred eEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHH-------HHH-
Confidence 9999872 125899999998631 1357899999999765 45555433222110000 000
Q ss_pred hccCCCCCeeeeccchhc---------ccc-CCCceeEEeccceeeecCCccchhhhh
Q 015259 219 ATRNLTTDFVRLDQDILS---------PLA-GKKQLYTYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 219 ~~~~~~~~~~~l~~d~l~---------~l~-~~~~i~~~~~~g~~~~i~t~~~~~~an 266 (410)
..+...+...+..++++ .+. +...+++.+.+..|.|+|+++++++..
T Consensus 225 -~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 225 -ASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred -hccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 00000011112122332 222 334688889888899999999998754
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=165.40 Aligned_cols=214 Identities=18% Similarity=0.215 Sum_probs=145.0
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
++.|||||+| .++||. +|+|+|++|+|||+|+++.+.+ |+|++.+ +.+.+++++ ++.++.
T Consensus 2 ~~~aiIlA~g--~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARY--GSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVV 67 (238)
T ss_pred cEEEEEecCC--CCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEE
Confidence 5789999999 999994 4999999999999999998876 6666643 456666653 455555
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCC-ceEEEEEecCc-c---cccccce
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGG-MGTILVIKVSA-E---SASQFGE 154 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~-~~~l~~~~~~~-~---~~~~~~~ 154 (410)
+..+....|++ .+..+.+.+. .+.|++++||.++ ..++.++++.+.+.+. .+++++..... . ++..+++
T Consensus 68 ~~~~~~~~g~~-~~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 143 (238)
T PRK13368 68 MTSDDHLSGTD-RLAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV 143 (238)
T ss_pred ecCccCCCccH-HHHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE
Confidence 44445555666 4665666553 3689999999764 6679999998866543 44445544321 1 1333333
Q ss_pred EEEcCCCCcEEEEecCCCC------ccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCee
Q 015259 155 LVADPDTNELLHYTEKPET------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (410)
Q Consensus 155 v~~d~~~~~v~~i~ekp~~------~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (410)
..+ +++++..+.++|.. ..+.+.++|+|+|++++|+.+...... +..
T Consensus 144 -~~~-~~g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~-------------------------~~~ 196 (238)
T PRK13368 144 -VVD-KNGDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPET-------------------------PLE 196 (238)
T ss_pred -EEC-CCCCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCC-------------------------hhh
Confidence 444 46789888865421 114478999999999999876532100 000
Q ss_pred eec-cchhcccc-CCCceeEEeccceeeecCCccchhhhhH
Q 015259 229 RLD-QDILSPLA-GKKQLYTYETMDFWEQIKTPGMSLKCSG 267 (410)
Q Consensus 229 ~l~-~d~l~~l~-~~~~i~~~~~~g~~~~i~t~~~~~~an~ 267 (410)
.+. .+++ .++ .+..++++..+++|.||+||+||.+++.
T Consensus 197 ~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 197 QIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred hhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence 011 2555 344 4557999998899999999999998875
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=153.25 Aligned_cols=223 Identities=14% Similarity=0.154 Sum_probs=148.0
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
++.+||||+| .++||. +|+|++++|+|||+|+++.+.. .+|++ .+.+.+.+++.. ++.++..
T Consensus 47 ~i~aIIpA~G--~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~-~~~e~I~~~~~~----~~v~vi~ 113 (293)
T PLN02917 47 RVVGIIPARF--ASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVVA-TDDERIAECCRG----FGADVIM 113 (293)
T ss_pred cEEEEEecCC--CCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEE-CChHHHHHHHHH----cCCEEEe
Confidence 6789999999 999994 4999999999999999999874 44444 334566666543 2333333
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEE--ecCcccccccceEE--
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVI--KVSAESASQFGELV-- 156 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~--~~~~~~~~~~~~v~-- 156 (410)
..+....|+++. ..+.+.+.. ..+.+++++||.++ ...+.++++.+.+. .++++++. ....+++..||.+.
T Consensus 114 ~~~~~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv 190 (293)
T PLN02917 114 TSESCRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCV 190 (293)
T ss_pred CCcccCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEE
Confidence 333455576655 567777742 24679999999985 45589999977543 33333333 22336677888875
Q ss_pred EcCCCCcEEEEecC--C---C----CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCe
Q 015259 157 ADPDTNELLHYTEK--P---E----TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (410)
Q Consensus 157 ~d~~~~~v~~i~ek--p---~----~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (410)
.| ++++++.|..+ | + .....+.++|+|.|+.+.+..+.+.... +...+
T Consensus 191 ~~-~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~----n~e~e------------------ 247 (293)
T PLN02917 191 VD-NQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPT----PLQLE------------------ 247 (293)
T ss_pred EC-CCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCC----cccch------------------
Confidence 56 56776644422 1 1 1223578999999999988777643221 11222
Q ss_pred eeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 228 VRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 228 ~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
+.| +|+. .+.++..|.++..+.....|||++|+.++...+.+
T Consensus 248 ~yL-tdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 248 EDL-EQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred hcc-HHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 224 7776 33344478888766567789999999999987643
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-18 Score=143.28 Aligned_cols=219 Identities=16% Similarity=0.257 Sum_probs=141.7
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|.||||||| .|+||.|+|.+.||+|+++.|+|||+++++.|.+ |+||+++..+++ +|+++ ++++.+.+.
T Consensus 1 ~nAIIlAAG--~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkd---Ky~vtLvyN 74 (231)
T COG4750 1 MNAIILAAG--LGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKD---KYDVTLVYN 74 (231)
T ss_pred CceEEEecc--cccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHH---hcCeEEEeC
Confidence 689999999 9999999999999999999999999999999998 777777777775 45553 567777777
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~ 163 (410)
+......+..+++.+++++. +.-++.+|.....+ +...+.. .+....+ .+. ....+|- +..+ .+++
T Consensus 75 ~kY~~yNn~ySlyla~d~l~-----ntYiidsDnyl~kN---if~~~~~-~S~Yfav-~~~--~~tnEw~-l~~~-~~~k 140 (231)
T COG4750 75 PKYREYNNIYSLYLARDFLN-----NTYIIDSDNYLTKN---IFLTKES-HSKYFAV-YRS--GKTNEWL-LIYN-SDGK 140 (231)
T ss_pred chHHhhhhHHHHHHHHHHhc-----ccEEeccchHhhhh---hhhcCcc-cceEEEE-Eec--CCCceeE-EEEc-CCCc
Confidence 77778889999999999995 57788999876332 2222211 1221212 121 2233343 3344 5788
Q ss_pred EEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCc
Q 015259 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243 (410)
Q Consensus 164 v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~ 243 (410)
|.++.-. .....+.+|+..|+....+.+....+..-.+-...-++| +++...-++...
T Consensus 141 i~~v~Ig---g~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yW-------------------d~v~~~ni~~l~ 198 (231)
T COG4750 141 ITRVDIG---GLNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYW-------------------DTVPMENIKELD 198 (231)
T ss_pred EEEEEec---CcccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHH-------------------HHHHHHHHHHHh
Confidence 8888653 235678899999998765554443221110001111222 344433333334
Q ss_pred eeEEecc-ceeeecCCccchhhhhHHH
Q 015259 244 LYTYETM-DFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 244 i~~~~~~-g~~~~i~t~~~~~~an~~~ 269 (410)
++.-..+ +.-++++++++|.+....+
T Consensus 199 m~iek~~~n~IyE~DsLdelrk~~~~~ 225 (231)
T COG4750 199 MYIEKLNDNDIYEFDSLDELRKFEQKF 225 (231)
T ss_pred HhHHhhcCCceEEeccHHHHHhhhhhh
Confidence 4443333 4577788888887766543
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=152.83 Aligned_cols=158 Identities=19% Similarity=0.202 Sum_probs=103.3
Q ss_pred eeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhhhhhcC--CC-------cccCC-CCCCCcEEccCe
Q 015259 227 FVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTS--PN-------LLASG-DGTKNATIIGDV 296 (410)
Q Consensus 227 ~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~--~~-------~~~~~-~~~~~~~i~~~~ 296 (410)
..+| +|.++.|++.+ ++...|||.|+ ++|+++|+.++....... .. +.... .-..++.+.+++
T Consensus 27 ~~~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v 99 (231)
T TIGR03532 27 QVDF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQV 99 (231)
T ss_pred cccc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCe
Confidence 3446 89999998766 88888999999 999999999987643110 00 00000 001345556666
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEe---------eEECCCCEECCCcEEccCC
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTN---------AIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~~~ 366 (410)
+|++++.|++++.|.++++||++|.|++++.|. +++||++|.|+.++.|.+ ++|+++|.||.++.|.++
T Consensus 100 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g- 178 (231)
T TIGR03532 100 IIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEG- 178 (231)
T ss_pred EECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCC-
Confidence 666666666666666667777777777777774 677777777777777753 667777777777766655
Q ss_pred CCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 367 DFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+.||+++.|++++++.+. +.+++++.
T Consensus 179 --------~~Ig~~~~IgagsvV~~d-i~~~~vv~ 204 (231)
T TIGR03532 179 --------VRVGKGAVVAAGAIVTED-VPPNTVVA 204 (231)
T ss_pred --------CEECCCCEECCCCEEccc-cCCCcEEE
Confidence 677777777776666432 34444443
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-17 Score=158.35 Aligned_cols=242 Identities=17% Similarity=0.203 Sum_probs=150.8
Q ss_pred ceEEEEEecCCCCCCccccCCCC-CCccccccCC-ccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCc-
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLN-IPKPLFPLGG-QPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRI- 78 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~-~pK~llpi~g-~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~- 78 (410)
.|.+|||||| .|+||+|++.. .||+|+|+.| +|||+++++.+.. ++|++..+...+.+.+... +.
T Consensus 5 ~~~~vIlaGG--~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~----~~~ 78 (478)
T PRK15460 5 KLYPVVMAGG--SGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQL----NKL 78 (478)
T ss_pred ceEEEEECCC--CccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhc----CCc
Confidence 5899999999 99999999987 7999999965 6999999999875 5444443444455444432 21
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccC---CCcEEEEcCCcccCCC--hHHHHHHHHh---cCCceEEEEEecCccccc
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDN---PSHIFLLNCDVCCSFP--LPEMLDAHRN---YGGMGTILVIKVSAESAS 150 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~---~~~~lvl~~D~i~~~~--l~~~l~~~~~---~~~~~~l~~~~~~~~~~~ 150 (410)
...++.++...+|+.++..+..++.+.. +.-++|+++|++.... |.+.++...+ .+..+|+...+. ...+
T Consensus 79 ~~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt--~PeT 156 (478)
T PRK15460 79 TENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPD--LPET 156 (478)
T ss_pred cccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCC--CCCC
Confidence 2356777888899998877666664321 2457899999986432 5555554322 244455554444 3456
Q ss_pred ccceEEEcCC-------C-CcEEEEecCCCC--------ccccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchh
Q 015259 151 QFGELVADPD-------T-NELLHYTEKPET--------FVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSF 213 (410)
Q Consensus 151 ~~~~v~~d~~-------~-~~v~~i~ekp~~--------~~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 213 (410)
.||++..+.. . ..|..|.|||+. ....+.|+|+|+|+.+. ++.|++.....-.....
T Consensus 157 gyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~------ 230 (478)
T PRK15460 157 GYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEK------ 230 (478)
T ss_pred CCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHH------
Confidence 7999987621 1 269999999973 22457899999999976 56666544322110000
Q ss_pred HhhhhhccCCCCCeeeeccch--------hccc--cCCCceeEEeccceeeecCCccchhhhh
Q 015259 214 EALQSATRNLTTDFVRLDQDI--------LSPL--AGKKQLYTYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~d~--------l~~l--~~~~~i~~~~~~g~~~~i~t~~~~~~an 266 (410)
.+. ..+...+...+..+. +.+. -+..++.+.+.+-.|-|+|++.++.+..
T Consensus 231 -~~~--~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 231 -AMS--AVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred -HHH--hccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 000 000000000010111 1121 1234688888877799999998887743
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=137.42 Aligned_cols=250 Identities=13% Similarity=0.158 Sum_probs=152.3
Q ss_pred eEEEEEecCCCCCCccccCC-CCCCccccccCC-ccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCCcc
Q 015259 9 VVAVIMVGGPTKGTRFRPLS-LNIPKPLFPLGG-QPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIP 79 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt-~~~pK~llpi~g-~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~ 79 (410)
|.+|||||| .|+||+||+ +..||+++++.+ ++|++.+++++.. ++|+++... ..+.+-+.+... +..
T Consensus 2 ~~pvIlaGG--~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~--~~~ 77 (333)
T COG0836 2 MIPVILAGG--SGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDI--ENA 77 (333)
T ss_pred ceeEEEeCC--CccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhh--ccc
Confidence 789999999 999999998 689999999955 8999999999887 777776543 233333332111 111
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccC-CCcEEEEcCCcccCCC--hHHHHHHHHh---cCCceEEEEEecCcccccccc
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDN-PSHIFLLNCDVCCSFP--LPEMLDAHRN---YGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~-~~~~lvl~~D~i~~~~--l~~~l~~~~~---~~~~~~l~~~~~~~~~~~~~~ 153 (410)
-.++.++....|+-++..+.-.+.+.. +.-++|+++|++.... +.+.++...+ .+..+|+...+. ...+.||
T Consensus 78 ~~illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt--~PeTGYG 155 (333)
T COG0836 78 AGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPT--RPETGYG 155 (333)
T ss_pred cceEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCC--CCccCcc
Confidence 126677888899999987655554332 3347899999986433 6666665433 233444444333 3456799
Q ss_pred eEEEcCC-----CCcEEEEecCCCC--------ccccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhh
Q 015259 154 ELVADPD-----TNELLHYTEKPET--------FVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSA 219 (410)
Q Consensus 154 ~v~~d~~-----~~~v~~i~ekp~~--------~~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (410)
++..... ..+|.+|.|||+. ....+.|+|+|+|+... ++.++......-+. +..-+...++ ..+
T Consensus 156 YIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~-~~~~~~~~~d-~~~ 233 (333)
T COG0836 156 YIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCA-AEKAFEAAVD-ENS 233 (333)
T ss_pred eeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHH-HHHHHhcccc-cch
Confidence 9987521 2379999999972 23467899999999976 56666543322110 0000000000 000
Q ss_pred ccCCCCCeeeeccchhccc--cCCCceeEEeccceeeecCCccchhhhh
Q 015259 220 TRNLTTDFVRLDQDILSPL--AGKKQLYTYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 220 ~~~~~~~~~~l~~d~l~~l--~~~~~i~~~~~~g~~~~i~t~~~~~~an 266 (410)
.+...+.|..+...-+.+. -+...+.+.+.+=.|-|+|++..+.+..
T Consensus 234 ~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~ 282 (333)
T COG0836 234 VRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL 282 (333)
T ss_pred hcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence 0000111111212222222 2345788888877899999988776644
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=127.74 Aligned_cols=115 Identities=22% Similarity=0.290 Sum_probs=95.0
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGD 367 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~ 367 (410)
.++.+.++++|++++.|++++.|+++++||++|.|++++.|.+|+|++++.|++++.+.+++|++++.|++++.+.+...
T Consensus 28 ~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~ 107 (163)
T cd05636 28 SGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRF 107 (163)
T ss_pred CCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCc
Confidence 35667778889999999999999888999999999999999999999999999999999999999999999998865211
Q ss_pred CC----------------cceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 368 FN----------------AKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 368 ~~----------------~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
.+ ...+ ++|+++++||.++.+ ++++|++++.|..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~iIg~~~~ig~~~~i~~g~~ig~~~~i~ag 159 (163)
T cd05636 108 DDKPVKVRLKGERVDTGRRKLG-AIIGDGVKTGINVSLNPGVKIGPGSWVYPG 159 (163)
T ss_pred CCcceEEEecCcceecCCcccC-cEEcCCeEECCCcEECCCcEECCCCEECCC
Confidence 00 0123 899999999999988 58888888888764
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=121.01 Aligned_cols=106 Identities=20% Similarity=0.318 Sum_probs=95.7
Q ss_pred CcEEccCeEECCCCEECCCcEECC---CcEECCCcEECCCCEE-----eeeEECCCCEECCCCEEEeeEECCCCEECCCc
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGP---NVSISANARIGAGVRL-----ISCIILDGVEIMENAVVTNAIVGWKSSIGRWS 360 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 360 (410)
++.+.++++|++++.|+++|.|.+ .+.||++|.|+++|.| .+++|+++|.|++++.+.+++|++++.|+.++
T Consensus 12 ~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~ 91 (155)
T cd04745 12 TAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNA 91 (155)
T ss_pred CCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCC
Confidence 566778899999999999999985 5899999999999999 56999999999999999999999999999999
Q ss_pred EEccCCCCCcceeeeEECCCCEECCCcEEc-ceEEcCCcEEccc
Q 015259 361 RVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 403 (410)
Q Consensus 361 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~v~~~~~v~~~ 403 (410)
.|.++ +.|+++++|++++.+. +..|++++++..+
T Consensus 92 ~I~~g---------~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~ 126 (155)
T cd04745 92 VVMDG---------AVIGEESIVGAMAFVKAGTVIPPRSLIAGS 126 (155)
T ss_pred EEeCC---------CEECCCCEECCCCEeCCCCEeCCCCEEecC
Confidence 99987 9999999999999994 6788888888544
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=120.12 Aligned_cols=109 Identities=29% Similarity=0.358 Sum_probs=96.0
Q ss_pred CCcEEccCeEECCCCEECCCcEECC---CcEECCCcEECCCCEEe-----eeEECCCCEECCCCEEEeeEECCCCEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGP---NVSISANARIGAGVRLI-----SCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (410)
+++.+.+++.|++++.|+++++|++ ...||++|.|.++|+|. .+.||++|+||+++.|..|+|+++|.||.+
T Consensus 22 ~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmg 101 (176)
T COG0663 22 PSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMG 101 (176)
T ss_pred CCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecC
Confidence 4788889999999999999999994 57899999999999997 589999999999999999999999999999
Q ss_pred cEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcccCC
Q 015259 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 405 (410)
Q Consensus 360 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~~~ 405 (410)
+.|.++ +.||++|.||+|+.++...+.|...+.-..|
T Consensus 102 A~vldg---------a~IG~~~iVgAgalV~~~k~~p~~~L~~G~P 138 (176)
T COG0663 102 ATVLDG---------AVIGDGSIVGAGALVTPGKEIPGGSLVVGSP 138 (176)
T ss_pred ceEeCC---------cEECCCcEEccCCcccCCcCCCCCeEeecCc
Confidence 999998 9999999999999997665555544444444
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-14 Score=121.42 Aligned_cols=92 Identities=23% Similarity=0.312 Sum_probs=86.0
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 366 (410)
.++.+.++++|++++.|++++.|.++++||++|.|++++.|. +++|+++|.|++++.|.+|+|++++.|+.++.+.+
T Consensus 10 ~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~-- 87 (163)
T cd05636 10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGD-- 87 (163)
T ss_pred CCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEec--
Confidence 467888999999999999999999999999999999999997 69999999999999999999999999999999877
Q ss_pred CCCcceeeeEECCCCEECCCcEE
Q 015259 367 DFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
++|++++.|++++++
T Consensus 88 --------siIg~~~~I~~~~~i 102 (163)
T cd05636 88 --------SVLGENVNLGAGTIT 102 (163)
T ss_pred --------CEECCCCEECCCcEE
Confidence 889999999888876
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-14 Score=124.30 Aligned_cols=104 Identities=24% Similarity=0.376 Sum_probs=88.0
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGD 367 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~ 367 (410)
.+..+.++++|++++.|++++.|.+++.||++|.|++++.|.++.|+++|.|++++.|.+++|++++.|++++.|..+
T Consensus 8 ~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~-- 85 (193)
T cd03353 8 ETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPG-- 85 (193)
T ss_pred CeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCc--
Confidence 467788899999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CCcceeeeEECCCCEECCCcEEcceEEcCCcEE
Q 015259 368 FNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 400 (410)
Q Consensus 368 ~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v 400 (410)
++|++++.|++++.++++.+++++.+
T Consensus 86 -------~~Ig~~~~Ig~~~~i~~s~ig~~~~i 111 (193)
T cd03353 86 -------TVLGEGVHIGNFVEIKKSTIGEGSKA 111 (193)
T ss_pred -------cEECCCCEECCcEEEecceEcCCCEe
Confidence 67777777777666655555554433
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.9e-14 Score=119.30 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=93.7
Q ss_pred CcEEccCeEECCCCEECCCcEEC---CCcEECCCcEECCCCEEee-----------eEECCCCEECCCCEEEeeEECCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIG---PNVSISANARIGAGVRLIS-----------CIILDGVEIMENAVVTNAIVGWKS 354 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~-----------~~i~~~~~i~~~~~i~~~~i~~~~ 354 (410)
++.+.++++||+++.|++++.|. +.+.||++|.|+++|.|.+ +.||+++.+..++.|.+++|+++|
T Consensus 11 ~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~ 90 (164)
T cd04646 11 ESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNN 90 (164)
T ss_pred CCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCC
Confidence 56677889999999999999985 4689999999999999975 468999999999999999999999
Q ss_pred EECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 355 ~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
+|+.++.|.++ +.||++++||++++| ++..+++++++..+
T Consensus 91 ~Ig~~a~I~~g---------v~Ig~~~~IgagsvV~~~~~i~~~~vi~g~ 131 (164)
T cd04646 91 VFESKSFVGKN---------VIITDGCIIGAGCKLPSSEILPENTVIYGA 131 (164)
T ss_pred EEeCCCEECCC---------CEECCCCEEeCCeEECCCcEECCCeEEeCC
Confidence 99999999988 999999999999999 45688888887664
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=123.28 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=94.6
Q ss_pred CCcEEccCeEECCCCEECCCcEECC---CcEECCCcEECCCCEE-----eeeEECCCCEECCCCEEEeeEECCCCEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGP---NVSISANARIGAGVRL-----ISCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (410)
.++.+.++++||+++.|+++|+|.+ .++||++|.||++|.| .+|+|+++++|++++.|.+|+|+++|.||.+
T Consensus 19 ~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~g 98 (192)
T TIGR02287 19 PTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMN 98 (192)
T ss_pred CCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCC
Confidence 3667788899999999999999974 5899999999999999 4699999999999999999999999999999
Q ss_pred cEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 360 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
+.+.++ ++||+++.|++++.+ ++..|.+++.+..+
T Consensus 99 a~I~~g---------~~IG~~s~Vgags~V~~~~~ip~~~l~~G~ 134 (192)
T TIGR02287 99 AVVMDG---------AVIGENSIVAASAFVKAGAEMPAQYLVVGS 134 (192)
T ss_pred cccCCC---------eEECCCCEEcCCCEECCCCEECCCeEEEcc
Confidence 999887 999999999999998 46677888777543
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-14 Score=128.28 Aligned_cols=107 Identities=20% Similarity=0.223 Sum_probs=95.9
Q ss_pred CCcEEccCeEECCCCEECCCcEECCC---cEECCCcEECCCCEEe-----------eeEECCCCEECCCCEEEeeEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLI-----------SCIILDGVEIMENAVVTNAIVGWK 353 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~~i~~~ 353 (410)
.++.+.+++.||+++.|+++|+|.+. +.||++|.|+++|.|. +++||++|+|+++|+|.+|+|+++
T Consensus 63 p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~ 142 (269)
T PLN02296 63 PSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDE 142 (269)
T ss_pred CCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCC
Confidence 46677788999999999999999865 5999999999999995 589999999999999999999999
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
|.||.++.|.++ +.|++++.|+++++| ++..|++++++..+
T Consensus 143 v~IG~ga~I~~g---------v~Ig~~a~IgagSvV~~~~~I~~~~~~~G~ 184 (269)
T PLN02296 143 AFVGMGATLLDG---------VVVEKHAMVAAGALVRQNTRIPSGEVWAGN 184 (269)
T ss_pred cEECCCcEECCC---------eEECCCCEECCCCEEecCCEeCCCeEEecc
Confidence 999999999988 999999999999999 46678898887553
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=114.33 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=88.1
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE---------eeEECCCCEECC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT---------NAIVGWKSSIGR 358 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~~~~i~~ 358 (410)
++.+.++++|++++.|.+++.+..++.||++|.|++++.|. +++|+++|.|+.++.|. .++|++++.|+.
T Consensus 7 ~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~ 86 (139)
T cd03350 7 GAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGA 86 (139)
T ss_pred CcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECC
Confidence 45666677777777777777777777888888888888885 67888888888888885 378999999999
Q ss_pred CcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEE---cCCcEEcccCCCc
Q 015259 359 WSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIV---LPNKTLNVSVHQE 407 (410)
Q Consensus 359 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v---~~~~~v~~~~~~~ 407 (410)
++.|.++ +.||+++.|+++++| ++..| +++++|.+++|++
T Consensus 87 ~a~I~~g---------v~Ig~~~~Ig~g~~V~~~~~I~~~~~~~~v~~~~~~~ 130 (139)
T cd03350 87 NCEVVEG---------VIVGKGAVLAAGVVLTQSTPIYDRETGEIYYGRVPPG 130 (139)
T ss_pred CCEECCC---------CEECCCCEEcCCCEEcCCeEecccCcccEEecccCCC
Confidence 9999887 889999999998888 23333 5889999999987
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-14 Score=141.00 Aligned_cols=96 Identities=31% Similarity=0.413 Sum_probs=90.2
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~ 368 (410)
++.+...+.||.++.|+.+++|. |++||+||.||.|++|.+|.||+||+||+||+|++|+||++|.|+++|.+.++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g--- 402 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPG--- 402 (673)
T ss_pred hccccceEEecccccccCCCeee-cceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCC---
Confidence 57788899999999999999999 99999999999999999999999999999999999999999999999999988
Q ss_pred CcceeeeEECCCCEECCCcEEc-ceEE
Q 015259 369 NAKLGITILGEAVGVEDEVVVT-NSIV 394 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v~-~~~v 394 (410)
|+||-++++|++-+++ ++.|
T Consensus 403 ------~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 403 ------SVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ------cEEeeeeEeCCCccccccccc
Confidence 9999999999999994 5454
|
|
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-13 Score=122.24 Aligned_cols=212 Identities=16% Similarity=0.118 Sum_probs=131.7
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
+||+|+| .|+||. +|+|++++|+|||.|+++.+.. |+|++. .+.+.+++.+ ++.++.....
T Consensus 2 ~iIpA~g--~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~----~g~~~v~~~~ 67 (238)
T TIGR00466 2 VIIPARL--ASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATD--DESVAQTCQK----FGIEVCMTSK 67 (238)
T ss_pred EEEecCC--CCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH----cCCEEEEeCC
Confidence 7999999 999994 6999999999999999999865 666654 3345555443 3433322222
Q ss_pred CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCc-ccc--cccceEEEcCC
Q 015259 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSA-ESA--SQFGELVADPD 160 (410)
Q Consensus 86 ~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~-~~~--~~~~~v~~d~~ 160 (410)
....|+ +.+..+.+.+.....+.++++.||.++ ...+.++++.+.+...+++.+..+... +.. .....+..+ +
T Consensus 68 ~~~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~-~ 145 (238)
T TIGR00466 68 HHNSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLD-S 145 (238)
T ss_pred CCCChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeC-C
Confidence 333343 344444443321113568889999985 345889998875555566666666521 111 112233445 5
Q ss_pred CCcEEEEecCCC-----------Cccc--cceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCe
Q 015259 161 TNELLHYTEKPE-----------TFVS--DLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (410)
Q Consensus 161 ~~~v~~i~ekp~-----------~~~~--~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (410)
+++.+.|.+.+- .+.. .+...|+|.|+++.++.+........+ .
T Consensus 146 ~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le-----------------------~ 202 (238)
T TIGR00466 146 QGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLE-----------------------E 202 (238)
T ss_pred CCeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCccc-----------------------c
Confidence 667766655411 1111 456899999999999887764332211 0
Q ss_pred eeeccchhccccCCCceeEEeccce-eeecCCccch
Q 015259 228 VRLDQDILSPLAGKKQLYTYETMDF-WEQIKTPGMS 262 (410)
Q Consensus 228 ~~l~~d~l~~l~~~~~i~~~~~~g~-~~~i~t~~~~ 262 (410)
.+- -+-|+.|-.+.+|.+...++. -..||||+|+
T Consensus 203 ~e~-leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 203 IEK-LEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cch-hHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 111 355666666778988887655 4589999987
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-14 Score=125.25 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=96.8
Q ss_pred CCcEEccCeEECCCCEECCCcEECCC---cEECCCcEECCCCEEe-----------eeEECCCCEECCCCEEEeeEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLI-----------SCIILDGVEIMENAVVTNAIVGWK 353 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~~i~~~ 353 (410)
.++.+.++++|++++.|+++++|.++ .+||++|.|+++|.|. +++||++|+||++|.|.+|+|+++
T Consensus 70 p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~ 149 (246)
T PLN02472 70 PNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPE 149 (246)
T ss_pred CCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCC
Confidence 46778888999999999999998864 7899999999999994 589999999999999999999999
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
|.||.++.|..+ ++|++++.|++++.+ ++..|.++.++..+
T Consensus 150 v~IG~~svI~~g---------avIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~ 191 (246)
T PLN02472 150 CIIGQHSILMEG---------SLVETHSILEAGSVLPPGRRIPTGELWAGN 191 (246)
T ss_pred CEECCCCEECCC---------CEECCCCEECCCCEECCCCEeCCCCEEEec
Confidence 999999999998 999999999999999 57889999888754
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-14 Score=122.06 Aligned_cols=112 Identities=20% Similarity=0.305 Sum_probs=88.5
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCc-----
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNA----- 370 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~----- 370 (410)
..+++++.|+++|.|. ++.||++++|+++|.|.+++||++|+|+.++.+.+++||++|.|+++++|.... |+.
T Consensus 3 ~~~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~-h~~~~~s~ 80 (204)
T TIGR03308 3 VLLSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATN-HPMERPTL 80 (204)
T ss_pred cccCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCC-CCCCcccc
Confidence 3456677777777775 689999999999999999999999999999999999999999999999998642 211
Q ss_pred ------------------------ceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 371 ------------------------KLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 371 ------------------------~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
..+.++||++++||.++++ ++++|++|++|..++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~ 150 (204)
T TIGR03308 81 HHFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTI 150 (204)
T ss_pred cccccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcE
Confidence 1133778888888888777 56777777777777877654
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=125.57 Aligned_cols=97 Identities=26% Similarity=0.346 Sum_probs=47.1
Q ss_pred ccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCC---
Q 015259 293 IGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGD--- 367 (410)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~--- 367 (410)
.+.+.+++++.|+++++|++++.||++|.|+++|.|+ ++.||++|.|..++.|. ++.||++|.|++++.|+...+
T Consensus 109 ~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a 188 (338)
T COG1044 109 DPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYA 188 (338)
T ss_pred cCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccc
Confidence 3333444444444444444444444444444444443 34445555555555555 355555555555555555322
Q ss_pred -------CCcceeeeEECCCCEECCCcEE
Q 015259 368 -------FNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 368 -------~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.-...|.++|+|+|.||++++|
T Consensus 189 ~~~~g~~Ki~q~g~V~Igd~VeIGanT~I 217 (338)
T COG1044 189 GTAIGWVKIPQIGRVIIGDDVEIGANTTI 217 (338)
T ss_pred cccCCceEcceeceEEECCceEEccccee
Confidence 1122345666666666666666
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.6e-14 Score=127.27 Aligned_cols=118 Identities=16% Similarity=0.075 Sum_probs=61.2
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-------------eeEECCCCEECCCCEEEe--------eE
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVTN--------AI 349 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~--------~~ 349 (410)
.+.++++|++++.|+++|.|.+++.||++|+|++++.|. +++||++|.|+++|+|.. ++
T Consensus 25 ~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~ 104 (254)
T cd03351 25 VIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTR 104 (254)
T ss_pred EECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceE
Confidence 333444444444444444444455555555555555553 345555555555555531 44
Q ss_pred ECCCCEECCCcEEccCCC---------CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCcc
Q 015259 350 VGWKSSIGRWSRVQAEGD---------FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEI 408 (410)
Q Consensus 350 i~~~~~i~~~~~i~~~~~---------~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~ 408 (410)
||++|.|++++.|...+. ...-.+.++||++|+|+.++.+ ++++|++++.|..++++..
T Consensus 105 IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~ 179 (254)
T cd03351 105 IGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYV 179 (254)
T ss_pred ECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeeecCCCe
Confidence 444444444444432100 0000112778888888877777 5666777777777776543
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=120.17 Aligned_cols=106 Identities=22% Similarity=0.265 Sum_probs=83.3
Q ss_pred CCcEEccCeEECCCCEECCCcEECCC---cEECCCcEECCCCEEe-----eeEECCCCEECCCCEEEeeEECCCCEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLI-----SCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (410)
.++.+.+++.||+++.|+++|+|.++ ++|+++|.|+++|.|. +++|++++.|++++.+.+++|+++|.||.+
T Consensus 21 ~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~g 100 (196)
T PRK13627 21 PSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMN 100 (196)
T ss_pred CCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcC
Confidence 35666677778888888888887643 5788888888888885 478889999998888888899999999999
Q ss_pred cEEccCCCCCcceeeeEECCCCEECCCcEEcc-eEEcCCcEEcc
Q 015259 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-SIVLPNKTLNV 402 (410)
Q Consensus 360 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~-~~v~~~~~v~~ 402 (410)
+.+.++ +.||+++.|++++.|.. ..+.+++++..
T Consensus 101 a~V~~g---------~~IG~~s~Vgags~V~~~~~ip~~~~~~G 135 (196)
T PRK13627 101 SVIMDG---------AVIGEESIVAAMSFVKAGFQGEKRQLLMG 135 (196)
T ss_pred CccCCC---------cEECCCCEEcCCCEEeCCcCcCCCcEEEe
Confidence 888887 88999999999888854 44666766543
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=126.42 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=72.5
Q ss_pred CcEEccCeEECCCCEECCCcEECC------------CcEECCCcEECCCCEEe--------eeEECCCCEECCCCEEE-e
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGP------------NVSISANARIGAGVRLI--------SCIILDGVEIMENAVVT-N 347 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~--------~~~i~~~~~i~~~~~i~-~ 347 (410)
++.+.+++.||+++.|++++.|++ +++||++|.|+++|.|. +++||++|.|++++.|. +
T Consensus 40 ~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~ 119 (254)
T TIGR01852 40 HVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHD 119 (254)
T ss_pred CCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccC
Confidence 344455555666666666666652 45666666666666664 34566666666666663 5
Q ss_pred eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 348 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 348 ~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
|+|++++.|+.++.+.++ ++||++++|+.++.+ ++++|+++++|..++++..+
T Consensus 120 ~~Ig~~~~i~~~~~i~~~---------~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~ 179 (254)
T TIGR01852 120 CVVGNHVILANNATLAGH---------VEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGL 179 (254)
T ss_pred CEECCCCEECCCCEECCC---------cEECCCcEEeccCEECCCcEECCCCEEeeeeeEeeecCCCcE
Confidence 666666666666666665 788888888887777 46677777777777776543
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=119.33 Aligned_cols=98 Identities=26% Similarity=0.393 Sum_probs=79.6
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEEE-----eeEECCCCEECCCcEEccCCC
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVVT-----NAIVGWKSSIGRWSRVQAEGD 367 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~~ 367 (410)
.+++++.|++++.|.+++.||++|.|+++|+|.. .+|+++|.|+++|+|. +++|++++.|++++.+.+
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g--- 88 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG--- 88 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee---
Confidence 5566677777777767788888888888888864 5789999999999886 489999999999998887
Q ss_pred CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccC
Q 015259 368 FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSV 404 (410)
Q Consensus 368 ~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~ 404 (410)
++||++|+||.++++ .+++|++|++|.+++
T Consensus 89 -------~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~ 125 (196)
T PRK13627 89 -------CVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGF 125 (196)
T ss_pred -------EEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCc
Confidence 888888888887776 567888888888866
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.9e-14 Score=128.11 Aligned_cols=119 Identities=16% Similarity=0.110 Sum_probs=68.2
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-------------eeEECCCCEECCCCEEEe--------eE
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVTN--------AI 349 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~--------~~ 349 (410)
.+.++++||+++.|++++.|.++++||++|+|++++.|+ .++||++|.|+++|.|.+ ++
T Consensus 28 ~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~ 107 (262)
T PRK05289 28 VIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTR 107 (262)
T ss_pred EECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeE
Confidence 334444444444444455555555566666666666664 255666666666666642 24
Q ss_pred ECCCCEECCCcEEccCCC---------CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 350 VGWKSSIGRWSRVQAEGD---------FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 350 i~~~~~i~~~~~i~~~~~---------~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
||+++.|+.++.|.+.+. .....+.++||++|+||.++.+ ++++|+++++|..++++..+
T Consensus 108 IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~di~~~~~ 183 (262)
T PRK05289 108 IGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYVL 183 (262)
T ss_pred ECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecceeccCCCCeE
Confidence 555555544444443211 0011122777777777777766 57788888888999988764
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-13 Score=113.67 Aligned_cols=105 Identities=24% Similarity=0.208 Sum_probs=93.8
Q ss_pred CcEEccCeEECCCCEECCCcEECCC---cEECCCcEECCCCEEee-----eEECCCCEECCCCEEEeeEECCCCEECCCc
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLIS-----CIILDGVEIMENAVVTNAIVGWKSSIGRWS 360 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 360 (410)
.+.+.+++.||+++.|++++.|.+. ++||++|.|+++|.|.. ++|++++.|++++.+.+++|++++.|+.++
T Consensus 12 ~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~ 91 (154)
T cd04650 12 TSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGA 91 (154)
T ss_pred CCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCC
Confidence 5667788999999999999998865 69999999999999985 899999999999999999999999999999
Q ss_pred EEccCCCCCcceeeeEECCCCEECCCcEEc-ceEEcCCcEEcc
Q 015259 361 RVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNV 402 (410)
Q Consensus 361 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~v~~~~~v~~ 402 (410)
.+.++ ++|+++++|++++.+. +..++++.++..
T Consensus 92 ~i~~~---------~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G 125 (154)
T cd04650 92 ILLNG---------AKIGDHVIIGAGAVVTPGKEIPDYSLVLG 125 (154)
T ss_pred EEeCC---------CEECCCCEECCCCEECCCcEeCCCCEEec
Confidence 99887 8999999999999994 577888888644
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=115.52 Aligned_cols=100 Identities=27% Similarity=0.372 Sum_probs=78.4
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEE-----EeeEECCCCEECCCcEEccCCCC
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVV-----TNAIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~~~ 368 (410)
|++++.|++++.|.+++.||++|.|+++|.|.+ ++||++|.|+++|+| .+++|++++.|+.++.+.+
T Consensus 3 i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~---- 78 (155)
T cd04745 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG---- 78 (155)
T ss_pred cCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEEC----
Confidence 456666777777777888888888888888864 889999999999999 4699999999999998876
Q ss_pred CcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcc--cCCCc
Q 015259 369 NAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNV--SVHQE 407 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~--~~~~~ 407 (410)
++||++++|+.++.+ .+++|+++++|.+ .+++.
T Consensus 79 ------~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~ 120 (155)
T cd04745 79 ------CTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPR 120 (155)
T ss_pred ------CEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCC
Confidence 788888888777776 4666667776665 44544
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=124.45 Aligned_cols=107 Identities=26% Similarity=0.331 Sum_probs=65.1
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEE--------------------Ee
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVV--------------------TN 347 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i--------------------~~ 347 (410)
+..|.+++.||+++.|+++|+|++++.||++|+|+++++|. ++.||++|.|+++++| .+
T Consensus 123 ~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~ 202 (338)
T COG1044 123 NVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGR 202 (338)
T ss_pred CeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceece
Confidence 34444555555555555555555566666666666666665 4777777777777777 25
Q ss_pred eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEE
Q 015259 348 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTL 400 (410)
Q Consensus 348 ~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v 400 (410)
.+|+++|.||.+++|..+ -++.++|++++.|.+-+.| ++|.||.++.|
T Consensus 203 V~Igd~VeIGanT~Idrg-----a~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I 251 (338)
T COG1044 203 VIIGDDVEIGANTTIDRG-----ALDDTVIGEGVKIDNLVQIGHNVRIGEHCII 251 (338)
T ss_pred EEECCceEEcccceeccc-----cccCceecCCcEEcceeEEccccEECCCcEE
Confidence 788899999999988875 2222455555555444444 34444444443
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=101.78 Aligned_cols=79 Identities=49% Similarity=0.924 Sum_probs=72.1
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEE
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITIL 377 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i 377 (410)
+++++.|++++.|+++++|+++|+|++++.|.++++++++.|++++.|.++++++++.+++++++..+ ++|
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~---------~~i 72 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENV---------TVL 72 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecC---------EEE
Confidence 57788888888888899999999999999999999999999999999999999999999999999887 889
Q ss_pred CCCCEECC
Q 015259 378 GEAVGVED 385 (410)
Q Consensus 378 ~~~~~i~~ 385 (410)
|+++.|+.
T Consensus 73 g~~~~i~~ 80 (80)
T cd05824 73 GDDVTIKD 80 (80)
T ss_pred CCceEECC
Confidence 98888763
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=124.18 Aligned_cols=35 Identities=9% Similarity=0.179 Sum_probs=27.9
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||++++|+.++.+ .++.|+++++|+.++|+..+
T Consensus 138 v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~dVpp~~i 179 (255)
T PRK12461 138 VTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYCM 179 (255)
T ss_pred eEECCCeEEeCCCEECCCCEECCCcEECCCceEeccCCCCeE
Confidence 788888888888777 56678888888889988765
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=124.48 Aligned_cols=111 Identities=22% Similarity=0.238 Sum_probs=76.4
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-------------eeEECCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-------------NAIVGWKS 354 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~~~~ 354 (410)
++.+.+.+.|++++.|++++.|++++.||++|+|+++|.|. +++||++|.|+++++|. +++|+++|
T Consensus 5 ~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 84 (254)
T cd03351 5 TAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNN 84 (254)
T ss_pred CCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCC
Confidence 45677777777777777888887788888888888888886 58888888888888885 57888888
Q ss_pred EECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEc
Q 015259 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLN 401 (410)
Q Consensus 355 ~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~ 401 (410)
.|++++.|..+.... .+.++||+++.|++++.| .+|+|+.+..|.
T Consensus 85 ~Ig~~~~I~~~~~~~--~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~ 130 (254)
T cd03351 85 TIREFVTIHRGTAQG--GGVTRIGNNNLLMAYVHVAHDCVIGNNVILA 130 (254)
T ss_pred EECCccEEeccccCC--CCceEECCCCEECCCCEECCCCEECCCcEEC
Confidence 888888887542110 012566666666666555 344444444443
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-13 Score=128.82 Aligned_cols=201 Identities=13% Similarity=0.128 Sum_probs=130.8
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPV 80 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i 80 (410)
.++.+|||||| .|+||.. ..||+|++++|+|||+|+++.+.+ |+|++......+.+.+. ..+. .+
T Consensus 4 m~v~aIILAAG--~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~---~~~~-~v 74 (378)
T PRK09382 4 SDISLVIVAAG--RSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKAL---PEIK-FV 74 (378)
T ss_pred CcceEEEECCC--CCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhc---ccCC-eE
Confidence 46899999999 9999953 679999999999999999999975 66666544333222111 1111 13
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
.++. ...+..++++.+++.+. .+.+++..||.++ ...+..+++...+ ..+++...++ .++..|+....+
T Consensus 75 ~~v~--gG~~r~~SV~~gL~~l~---~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~~pv--~Dtik~~~~tld 145 (378)
T PRK09382 75 TLVT--GGATRQESVRNALEALD---SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPALPV--ADTLKRANETVD 145 (378)
T ss_pred EEeC--CCchHHHHHHHHHHhcC---CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEEEEe--ccCcEEeeeEcC
Confidence 3332 33457889999999885 3678999999875 3347888776543 3456666666 555566654444
Q ss_pred CCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
.+.+..+ +.|+...+.. +++... +.+.+ +|....+
T Consensus 146 --R~~l~~~-QTPQ~f~~~~-----------l~~a~~------------------------------~~~~~-TDd~sl~ 180 (378)
T PRK09382 146 --REGLKLI-QTPQLSRTKT-----------LKAAAD------------------------------GRGDF-TDDSSAA 180 (378)
T ss_pred --cccEEEE-ECCCCCCHHH-----------HHHHHh------------------------------CCCCc-ccHHHHH
Confidence 3355555 5565432222 111111 01123 4555544
Q ss_pred cC-CCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 239 AG-KKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 239 ~~-~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
.. +.+|..++-++.|..|++|+|+..+...+.
T Consensus 181 ~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~ 213 (378)
T PRK09382 181 EAAGGKVALVEGSEDLHKLTYKEDLKMADLLLS 213 (378)
T ss_pred HHcCCcEEEEECCCcccCCCCHHHHHHHHHHhc
Confidence 43 457888888889999999999999987553
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=102.28 Aligned_cols=79 Identities=27% Similarity=0.503 Sum_probs=60.5
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEE
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITIL 377 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i 377 (410)
|++++.|++++.|. ++.||++|.|++++.|.+++|++++.|++++.|.++++++++.|++++++.+ |+|
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~----------~ii 70 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD----------CLV 70 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEcc----------CEE
Confidence 56667777777775 6777888888878888778888888888888888888888888888887776 777
Q ss_pred CCCCEECCCc
Q 015259 378 GEAVGVEDEV 387 (410)
Q Consensus 378 ~~~~~i~~~~ 387 (410)
|+++.|++++
T Consensus 71 ~~~~~i~~~~ 80 (81)
T cd04652 71 GSGYRVEAGT 80 (81)
T ss_pred CCCcEeCCCC
Confidence 7777777664
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=115.03 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=76.8
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEEee-----------EECCCCEECCCcEE
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVTNA-----------IVGWKSSIGRWSRV 362 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~-----------~i~~~~~i~~~~~i 362 (410)
|++++.|++++.|.+++.||++|.|++++.|. .++||++|.|+++|.|.++ +|++++.+..++.|
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 56777777777777788888888888888884 4689999999999999754 56777777777777
Q ss_pred ccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEccc--CCCc
Q 015259 363 QAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVS--VHQE 407 (410)
Q Consensus 363 ~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~--~~~~ 407 (410)
.+ ++||++|+|++++++ .+|+|+++++|.++ +++.
T Consensus 82 ~~----------~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~ 125 (164)
T cd04646 82 EA----------LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPEN 125 (164)
T ss_pred Ee----------eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCC
Confidence 66 788888888877777 46677777777776 5554
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-13 Score=119.42 Aligned_cols=201 Identities=17% Similarity=0.159 Sum_probs=127.5
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
++.+|||||| .|+||. +|+|++++|+|||+|+++.+.+ |+|++. .+.+.+++.+ ++..+.
T Consensus 1 ~~~~iIlA~G--~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~----~~~~~~ 66 (223)
T cd02513 1 KILAIIPARG--GSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARK----YGAEVP 66 (223)
T ss_pred CeEEEEecCC--CCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH----hCCCce
Confidence 3679999999 999994 4999999999999999999974 555442 3344444432 233223
Q ss_pred EeeC----CCCCCcHHHHHHhHHHhccc--CCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccc
Q 015259 82 YLRE----DKPHGSAGALYNFRDLIMED--NPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 82 ~i~~----~~~~g~~~~l~~~~~~l~~~--~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (410)
+... ....|+.+++..+.+.+... ..+.++++.||.++ ...+..+++.+.+.+.+.++.+.+. .+...++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~~ 144 (223)
T cd02513 67 FLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEF--HRFPWRA 144 (223)
T ss_pred eeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEec--CcCcHHh
Confidence 3321 33457889999988877521 13679999999975 4569999998877666766666554 2222233
Q ss_pred eEEEcCCCCcEEEEecC-----CCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCee
Q 015259 154 ELVADPDTNELLHYTEK-----PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (410)
Q Consensus 154 ~v~~d~~~~~v~~i~ek-----p~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (410)
.+..+ ++..+..+.+. .+.+.....++|+|+++++.+.....
T Consensus 145 ~~~~~-~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~-------------------------------- 191 (223)
T cd02513 145 LGLDD-NGLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNS-------------------------------- 191 (223)
T ss_pred eeecc-CCceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCC--------------------------------
Confidence 33222 11122222121 12344556778999999987532110
Q ss_pred eeccchhccccCCCceeEEeccc-eeeecCCccchhhhhH
Q 015259 229 RLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSG 267 (410)
Q Consensus 229 ~l~~d~l~~l~~~~~i~~~~~~g-~~~~i~t~~~~~~an~ 267 (410)
.+ ++++..+.... ...+|+|++|+..+..
T Consensus 192 -----~~-----g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 192 -----FF-----GGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred -----cc-----CCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 01 34666665544 5889999999877643
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=101.02 Aligned_cols=79 Identities=37% Similarity=0.511 Sum_probs=67.4
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeE
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITI 376 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~ 376 (410)
+|++++.|++++.|.+ +.||++|+|++++.|.+++|+++|+|++++.|.+++|++++.|++++++.++ ++
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~---------~~ 70 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNL---------CI 70 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCC---------eE
Confidence 4678888888888875 8899999999999999999999999999999999999999999998888876 78
Q ss_pred ECCCCEECC
Q 015259 377 LGEAVGVED 385 (410)
Q Consensus 377 i~~~~~i~~ 385 (410)
+++++.|++
T Consensus 71 ig~~~~i~~ 79 (79)
T cd03356 71 IGDDVVVED 79 (79)
T ss_pred ECCCeEECc
Confidence 888877763
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=118.57 Aligned_cols=96 Identities=27% Similarity=0.402 Sum_probs=78.5
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEE-----eeEECCCCEECCCcEEccCCC
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVT-----NAIVGWKSSIGRWSRVQAEGD 367 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~~ 367 (410)
.|++++.|++++.|.+++.||++|.|+++|.|. ..+||++|.|+++|+|. +++|++++.|++++.|.+
T Consensus 10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~--- 86 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG--- 86 (192)
T ss_pred cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcC---
Confidence 567777777777777788888888888888886 47899999999999993 699999999999999988
Q ss_pred CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcc
Q 015259 368 FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNV 402 (410)
Q Consensus 368 ~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~ 402 (410)
|+|++++.||.++++ .+|.|++++.|.+
T Consensus 87 -------siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~ 121 (192)
T TIGR02287 87 -------CIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKA 121 (192)
T ss_pred -------CEECCCCEECCCcccCCCeEECCCCEEcCCCEECC
Confidence 888888888877766 4556666666665
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-13 Score=117.33 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=70.0
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEcc---
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA--- 364 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~--- 364 (410)
.+.+.+++.|++++.|++++.|. ++.||++|.|++++.|.+++|++++.|+++++|. +++|++++.|++++.+.+
T Consensus 27 ~a~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~i 105 (193)
T cd03353 27 GVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTI 105 (193)
T ss_pred CCEEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceE
Confidence 34444555555555555555555 3466666666666666666666666666666665 455555554444333211
Q ss_pred -------------------------CCC----CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCcc
Q 015259 365 -------------------------EGD----FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEI 408 (410)
Q Consensus 365 -------------------------~~~----~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~ 408 (410)
+.- .......++||++++|+.++++ ++++|++|++|..++|+.-
T Consensus 106 g~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~ 185 (193)
T cd03353 106 GEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGA 185 (193)
T ss_pred cCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCC
Confidence 000 0000112677778888777665 6888999999999998875
Q ss_pred c
Q 015259 409 I 409 (410)
Q Consensus 409 ~ 409 (410)
+
T Consensus 186 ~ 186 (193)
T cd03353 186 L 186 (193)
T ss_pred E
Confidence 4
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-13 Score=122.12 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=57.4
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-------------eeEECCCCEECCCCEEE--------ee
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVT--------NA 348 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~--------~~ 348 (410)
+.+.+++.|++++.|+++|.|.+++.||++|+|++++.|. +++||++|.|+++|.|. .+
T Consensus 23 ~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~ 102 (254)
T TIGR01852 23 CIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVT 102 (254)
T ss_pred CEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcE
Confidence 3344444444555555555555556666666666666664 45666666666666664 34
Q ss_pred EECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEc
Q 015259 349 IVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLN 401 (410)
Q Consensus 349 ~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~ 401 (410)
+||+++.|+.++.|.+. |.||++++|++++.+ .+++|++++.|.
T Consensus 103 ~IG~~~~I~~~~~I~~~---------~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig 147 (254)
T TIGR01852 103 RIGNNNLLMAYSHIAHD---------CVVGNHVILANNATLAGHVEVGDYAIIG 147 (254)
T ss_pred EECCCCEECCCCEEccC---------CEECCCCEECCCCEECCCcEECCCcEEe
Confidence 55666666655555443 666666666666655 334444444333
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-13 Score=122.16 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=86.5
Q ss_pred CCcEEccCeEECCCCEECCCcEEC-----CCcEECCCcEECCCCEEee-eEECCCCEECCCCEEE---------eeEECC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIG-----PNVSISANARIGAGVRLIS-CIILDGVEIMENAVVT---------NAIVGW 352 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~-----~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~i~~ 352 (410)
.+..+.+++++++++.|++++.|. .++.||++|.|+.++.|++ ++||++|+|+.++.|. +++|++
T Consensus 102 ~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgD 181 (272)
T PRK11830 102 AGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIED 181 (272)
T ss_pred CCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcC
Confidence 356677777788888887777776 3456777777777777764 5788888888887765 389999
Q ss_pred CCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEc---CCcEEcccCCCcc
Q 015259 353 KSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVL---PNKTLNVSVHQEI 408 (410)
Q Consensus 353 ~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~---~~~~v~~~~~~~~ 408 (410)
+|.||.++.|..+ ++||++++|++++.| +++.|+ +|.++..++|+.-
T Consensus 182 nv~IGa~s~I~~G---------v~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~s 232 (272)
T PRK11830 182 NCFIGARSEVVEG---------VIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGS 232 (272)
T ss_pred CCEECCCCEEcCC---------CEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCc
Confidence 9999999999877 999999999999999 577788 4667776777654
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.3e-13 Score=125.08 Aligned_cols=102 Identities=24% Similarity=0.323 Sum_probs=73.3
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (410)
.++.+.+.+.|++++.|++++.|++++.||++|+|++++.|+ +++||++|.|++++.|. +++|+++|.|++++.|+..
T Consensus 96 p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~ 175 (324)
T TIGR01853 96 PTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSD 175 (324)
T ss_pred CCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCC
Confidence 356677777777777777777777777777788887777774 67788888888888887 7888888888888888642
Q ss_pred CC-----------CCcceeeeEECCCCEECCCcEE
Q 015259 366 GD-----------FNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 366 ~~-----------~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.+ .-.+.|.++||+++.||+++++
T Consensus 176 gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I 210 (324)
T TIGR01853 176 GFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTI 210 (324)
T ss_pred CccceeccCCcceecCccceEEECCCcEECCCCEE
Confidence 11 0112245777777777777766
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=116.61 Aligned_cols=115 Identities=23% Similarity=0.401 Sum_probs=88.0
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
||||||| .|+||+. ||+|++++|+|||+|+++.+.+ |+|++.+ +.+.+++.. ++ +.++..
T Consensus 1 ~vILa~G--~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~----~~--~~~v~~ 65 (160)
T PF12804_consen 1 AVILAAG--KSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLER----YG--IKVVVD 65 (160)
T ss_dssp EEEEESS--SCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT----TT--SEEEE-
T ss_pred CEEECCc--CcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhc----cC--ceEEEe
Confidence 6999999 9999975 9999999999999999999987 7777776 344444432 23 454443
Q ss_pred -CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEE
Q 015259 86 -DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVI 142 (410)
Q Consensus 86 -~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~ 142 (410)
....|++++++.+...+. ..++|++++||+++ ...+..+++.+.+.+.++++...
T Consensus 66 ~~~~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 66 PEPGQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp STSSCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ccccCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 346899999999999873 25899999999975 34588999988766666555443
|
... |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-13 Score=121.17 Aligned_cols=112 Identities=23% Similarity=0.237 Sum_probs=88.8
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCCcceee
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGI 374 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~ 374 (410)
+++.++.|++++.|.+++.||++++|++++.|. +++||++|.|+.++.|. +++|+++|.|+.++.|.+....+...+
T Consensus 82 ~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~- 160 (231)
T TIGR03532 82 LKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKP- 160 (231)
T ss_pred ccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCC-
Confidence 578888888888888889999999999999986 68899999999999997 899999999999999975221111111
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
++||++|+||+++++ ++++|+++++|..++++..+
T Consensus 161 v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~v 202 (231)
T TIGR03532 161 VVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTV 202 (231)
T ss_pred eEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcE
Confidence 677777777766666 57777888888888877654
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.1e-13 Score=112.58 Aligned_cols=104 Identities=29% Similarity=0.355 Sum_probs=88.1
Q ss_pred CcEEccCeEECCCCEECCCcEECC----CcEECCCcEECCCCEEe-----eeEECCCCEECCCCEEE-eeEECCCCEECC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGP----NVSISANARIGAGVRLI-----SCIILDGVEIMENAVVT-NAIVGWKSSIGR 358 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~ 358 (410)
++.+.+++.+|+++.|++++.|.. ++.||++|.|++++.|. ++.||++|.|+.++.|. +++|+++|.||.
T Consensus 14 ~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~ 93 (167)
T cd00710 14 TAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGF 93 (167)
T ss_pred CCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECC
Confidence 566777788888888888888874 47899999999999994 57899999999999998 499999999999
Q ss_pred CcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 359 WSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 359 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
++.|.+ +.||+++.|++++.+.++.|+++..|+.
T Consensus 94 ~~~I~~----------~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~ 127 (167)
T cd00710 94 RSVVFN----------AKVGDNCVIGHNAVVDGVEIPPGRYVPA 127 (167)
T ss_pred CCEEEC----------CEECCCCEEcCCCEEeCCEeCCCCEECC
Confidence 999986 8999999999999997666666666643
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=110.51 Aligned_cols=105 Identities=24% Similarity=0.314 Sum_probs=93.2
Q ss_pred CcEEccCeEECCCCEECCCcEECCC---cEECCCcEECCCCEEee-----eEECCCCEECCCCEEEeeEECCCCEECCCc
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLIS-----CIILDGVEIMENAVVTNAIVGWKSSIGRWS 360 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 360 (410)
.+.+.+++++++++.|++++.|.++ ++||++|.|++++.|.. ++|++++.|+.+|.+.+++|++++.|+.++
T Consensus 11 ~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~ 90 (153)
T cd04645 11 NATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGA 90 (153)
T ss_pred CCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCC
Confidence 5677788899999999999988854 69999999999999986 599999999999999999999999999999
Q ss_pred EEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEcc
Q 015259 361 RVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNV 402 (410)
Q Consensus 361 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~ 402 (410)
.+..+ ++|+++++|++++.+ ++..++++.++..
T Consensus 91 ~v~~~---------~~ig~~~~ig~~~~v~~~~~i~~~~~~~g 124 (153)
T cd04645 91 IILDG---------AVIGKGSIVAAGSLVPPGKVIPPGSLVAG 124 (153)
T ss_pred EEcCC---------CEECCCCEECCCCEECCCCEeCCCCEEeC
Confidence 99876 899999999999999 4567888777753
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=118.14 Aligned_cols=119 Identities=21% Similarity=0.281 Sum_probs=89.9
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|.+|||||| +|+||++ .||+|++++|+|||+|+++.+.. ++|++.++.+..+.++++. . ..+.
T Consensus 1 m~aIILAgG--~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~--~~~~ 68 (183)
T TIGR00454 1 MDALIMAGG--KGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----Y--KDYK 68 (183)
T ss_pred CeEEEECCc--cCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----C--cEEE
Confidence 689999999 9999975 69999999999999999999875 7777776666777777641 1 1222
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEE
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVI 142 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~ 142 (410)
.....|.+.++..+.+.+.. .++|+++.||+++ ...+..+++.+...+.....++.
T Consensus 69 -~~~g~G~~~~l~~al~~~~~--~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 69 -NASGKGYIEDLNECIGELYF--SEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred -ecCCCCHHHHHHHHhhcccC--CCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 25667888888888775431 4789999999985 55688999987665555444443
|
At this time this gene appears to be present only in Archea |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-13 Score=119.29 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=66.9
Q ss_pred CcEEccCeEECCCCEECCCcEEC-----CCcEECCCcEECCCCEEe-eeEECCCCEECCCCEE---------EeeEECCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIG-----PNVSISANARIGAGVRLI-SCIILDGVEIMENAVV---------TNAIVGWK 353 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~-----~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i---------~~~~i~~~ 353 (410)
+..+.+++.+++++.|++++.|. .++.||++|.|+.++.|+ ++.||+||+|+.++.| .+++|+++
T Consensus 100 ~~rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDn 179 (269)
T TIGR00965 100 GFRVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN 179 (269)
T ss_pred CEEECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCC
Confidence 34444445555555555554444 456677777777777776 4778888888877777 34799999
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
|.||.+|.|.++ ++||++++||+|++|
T Consensus 180 v~IGa~a~I~~G---------V~IG~gavIGaGavI 206 (269)
T TIGR00965 180 CFIGARSEIVEG---------VIVEEGSVISMGVFI 206 (269)
T ss_pred CEECCCCEEcCC---------CEECCCCEEeCCCEE
Confidence 999999999887 888888888888888
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-13 Score=119.41 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=128.1
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCCccE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPV 80 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~i 80 (410)
++.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.. ++|++.... +.+...... .. ..+
T Consensus 3 ~~~~iILAaG--~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~~ 73 (227)
T PRK00155 3 MVYAIIPAAG--KGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PKV 73 (227)
T ss_pred ceEEEEEcCc--cccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-Cce
Confidence 5889999999 9999963 569999999999999999999854 666665443 233222211 11 223
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
.++.. ..+.+++++.+.+.+.+ .+.++++.||.++ ...+.++++.+.+.+ .++...+. .+. +..+ +
T Consensus 74 ~~~~~--~~~~~~sv~~~l~~~~~--~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~--~~~--~~~v--~ 141 (227)
T PRK00155 74 TVVAG--GAERQDSVLNGLQALPD--DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPV--KDT--IKRS--D 141 (227)
T ss_pred EEeCC--cchHHHHHHHHHHhCCC--CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEec--ccc--EEEE--c
Confidence 44332 23578999999888732 3678999999985 355899999876543 33333333 111 2222 3
Q ss_pred CCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
+++.+..+.+.. ..... -+.|.|+.+.+..+.+.... ..++ + .|....+
T Consensus 142 -~~g~~~~~~~r~---~~~~~-~~p~~f~~~~l~~~~~~~~~-------~~~~------------------~-~d~~~~~ 190 (227)
T PRK00155 142 -DGGGIVDTPDRS---GLWAA-QTPQGFRIELLREALARALA-------EGKT------------------I-TDDASAV 190 (227)
T ss_pred -CCCceeecCChH---Hheee-eCCccchHHHHHHHHHHHHh-------cCCC------------------c-CcHHHHH
Confidence 345566553221 11122 24778888776544321110 0111 1 2333222
Q ss_pred cC-CCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 239 AG-KKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 239 ~~-~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
.. +..+..++.+..+++|+|++||..+...+.
T Consensus 191 ~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 191 ERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred HHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 22 346777776666889999999988876554
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-13 Score=121.50 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=77.7
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEEE-----------eeEECCCCEECCCcE
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVVT-----------NAIVGWKSSIGRWSR 361 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~ 361 (410)
.|++++.|.+++.|.+++.||++|.|+++|.|.. ++||++|.|+++|+|. +++|+++|.|+.+|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~av 133 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAV 133 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCce
Confidence 4555556666666666777788888877877763 5799999999999995 589999999999998
Q ss_pred EccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEccc--CCCcc
Q 015259 362 VQAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVS--VHQEI 408 (410)
Q Consensus 362 i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~--~~~~~ 408 (410)
|.+ |+||++|+||.+++| .+++|++|++|.++ +++..
T Consensus 134 I~g----------~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~ 179 (269)
T PLN02296 134 LHG----------CTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGE 179 (269)
T ss_pred ecC----------CEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCe
Confidence 876 777777777777766 56777788888777 45443
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-13 Score=99.63 Aligned_cols=79 Identities=13% Similarity=0.241 Sum_probs=74.5
Q ss_pred ECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEc
Q 015259 316 ISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVL 395 (410)
Q Consensus 316 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~ 395 (410)
||++++|++++.|.+++|+++|.|++++.|.+++|++++.|+.+++|.+ ++|++++.|++++.+.+|+|+
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~----------svi~~~~~i~~~~~v~~~ii~ 71 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN----------CIIGNGAVIGEKCKLKDCLVG 71 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEec----------cEEeCCCEECCCCEEccCEEC
Confidence 7888889999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred CCcEEcccC
Q 015259 396 PNKTLNVSV 404 (410)
Q Consensus 396 ~~~~v~~~~ 404 (410)
+++.|..+.
T Consensus 72 ~~~~i~~~~ 80 (81)
T cd04652 72 SGYRVEAGT 80 (81)
T ss_pred CCcEeCCCC
Confidence 999998763
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.4e-13 Score=119.05 Aligned_cols=207 Identities=18% Similarity=0.228 Sum_probs=127.5
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
.+|||||| .|+||++ ..||+|+|++|+|||+|+++.+.. ++|++..........+.. ......+.++
T Consensus 2 ~~vILAaG--~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~--~~~~~~~~~~ 74 (218)
T cd02516 2 AAIILAAG--SGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK--YGLSKVVKIV 74 (218)
T ss_pred EEEEECCc--ccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh--cccCCCeEEE
Confidence 58999999 9999986 379999999999999999999875 666665544333222211 1112234444
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
... .+..++++.+.+.+.....+.++++.||.++ ...+..+++.+.+.+. .+..... . .+....| ++
T Consensus 75 ~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~--~----~~~~~~~-~~ 143 (218)
T cd02516 75 EGG--ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPV--T----DTIKRVD-DD 143 (218)
T ss_pred CCc--hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEec--c----ccEEEec-CC
Confidence 332 3567889999888731124678999999985 3458999998755432 2333322 1 1122345 56
Q ss_pred CcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCC
Q 015259 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (410)
Q Consensus 162 ~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (410)
+.+..+.+. .......+. ++|+.+.+..+-..... ..+.+ +|....+.+.
T Consensus 144 g~~~~~~~r---~~~~~~~~P-~~f~~~~~~~~~~~~~~-------------------------~~~~~-td~~~~~~~~ 193 (218)
T cd02516 144 GVVVETLDR---EKLWAAQTP-QAFRLDLLLKAHRQASE-------------------------EGEEF-TDDASLVEAA 193 (218)
T ss_pred CceeecCCh---HHhhhhcCC-CcccHHHHHHHHHHHHh-------------------------cCCCc-CcHHHHHHHc
Confidence 788887664 224455566 78888876544332110 01112 4444433332
Q ss_pred -CceeEEeccceeeecCCccchhh
Q 015259 242 -KQLYTYETMDFWEQIKTPGMSLK 264 (410)
Q Consensus 242 -~~i~~~~~~g~~~~i~t~~~~~~ 264 (410)
.++........-.+|+||+||..
T Consensus 194 ~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 194 GGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CCCeEEEecCcccccCCCHHHHhh
Confidence 35666665555569999999854
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-13 Score=120.82 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=81.5
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-------------eeEECCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-------------NAIVGWKS 354 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~~~~ 354 (410)
++.+.+.+.|++++.|+++|.|++++.||++|.|++++.|. +++||++|.|+++++|. .++||+++
T Consensus 8 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~ 87 (262)
T PRK05289 8 TAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNN 87 (262)
T ss_pred CCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCC
Confidence 56677777777777777788888888888888888888886 68899999999999996 48999999
Q ss_pred EECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEcc
Q 015259 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNV 402 (410)
Q Consensus 355 ~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~ 402 (410)
.|++++.|..+... ..+.+.||+++.|++++.+ .+|+|+.+.++..
T Consensus 88 ~I~e~~~I~~~~~~--~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~ 134 (262)
T PRK05289 88 TIREFVTINRGTVQ--GGGVTRIGDNNLLMAYVHVAHDCVVGNHVILAN 134 (262)
T ss_pred EECCCeEEeccccc--CCCeeEECCceEECCCCEECCeEEECCCeEECC
Confidence 99999999874210 0112566666666666666 3555555554443
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-13 Score=119.14 Aligned_cols=205 Identities=17% Similarity=0.204 Sum_probs=127.4
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCCccEEE
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPVRY 82 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~i~~ 82 (410)
.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.+ ++|++.... +.+...+.. . ..+.+
T Consensus 1 ~aiIlAaG--~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~--~~~~~ 70 (217)
T TIGR00453 1 SAVIPAAG--RGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---R--AVPKI 70 (217)
T ss_pred CEEEEcCc--ccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---C--CcEEE
Confidence 37999999 9999975 569999999999999999999875 666665432 344433321 1 12344
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+... .+..++++.+.+.+. ..+.++++.||.++ ...+..+++.+.+. .++++..+. ..++..++ +
T Consensus 71 ~~~~--~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~------~~~v~~~~-~ 137 (217)
T TIGR00453 71 VAGG--DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV------ADTLKRVE-A 137 (217)
T ss_pred eCCC--chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec------cceEEEEc-C
Confidence 4322 245688988888772 24689999999985 34588998877653 333444433 12334445 4
Q ss_pred CCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
++.+..+.++. ......+ .|.|+...+..+...... ++ +.+ .|....+..
T Consensus 138 ~g~~~~~~~r~---~~~~~~~-p~~f~~~~l~~~~~~~~~------------------------~~-~~~-~d~~~~~~~ 187 (217)
T TIGR00453 138 DGFIVETVDRE---GLWAAQT-PQAFRTELLKKALARAKE------------------------EG-FEI-TDDASAVEK 187 (217)
T ss_pred CCceeecCChH---HeEEEeC-CCcccHHHHHHHHHHHHh------------------------cC-CCC-CcHHHHHHH
Confidence 56677776642 1222333 588888776443321100 01 112 333333332
Q ss_pred -CCceeEEeccceeeecCCccchhhhhH
Q 015259 241 -KKQLYTYETMDFWEQIKTPGMSLKCSG 267 (410)
Q Consensus 241 -~~~i~~~~~~g~~~~i~t~~~~~~an~ 267 (410)
+..+..++.+....+|+|++||..+..
T Consensus 188 ~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 188 LGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred cCCCeEEEecCccccccCCHHHHHHHHH
Confidence 346777777666779999999977654
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=110.19 Aligned_cols=100 Identities=24% Similarity=0.288 Sum_probs=86.9
Q ss_pred CeEECCCCEECCCcEECCC---cEECCCcEECCCCEEee-------------eEECCCCEECCCCEEEeeEECCCCEECC
Q 015259 295 DVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLIS-------------CIILDGVEIMENAVVTNAIVGWKSSIGR 358 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~~~i~~~~~i~~ 358 (410)
.+++++++.|+++|+|.+. +.||++|.|+++|.|.. +.|++++.|++++.+.+++|++++.|++
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~ 100 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGK 100 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECC
Confidence 5677788888888877754 68888888888888864 4799999999999999999999999999
Q ss_pred CcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 359 WSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 359 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
++.|..+ ++|++++.|++++++ .++.|++++++..+
T Consensus 101 ~~~Ig~~---------~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~ 137 (161)
T cd03359 101 NCVIGRR---------CIIKDCVKILDGTVVPPDTVIPPYSVVSGR 137 (161)
T ss_pred CCEEcCC---------CEECCCcEECCCCEECCCCEeCCCCEEecc
Confidence 9999988 999999999999999 67789999888753
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=123.47 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=24.2
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||++++++.++.| .+++|++++.|..++++..+
T Consensus 254 ~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~~ 295 (324)
T TIGR01853 254 TKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSIPPPGV 295 (324)
T ss_pred cEECCCeEEccccccccCCEECCCCEEccCCEeCCcCCCCcE
Confidence 555555555555555 57888888888888887654
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=114.69 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=78.7
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
+|||||| .|+||++ ||+|++++|+|||+|+++.+.+ ++|++.+..+.+...+. ..+ .+.++..
T Consensus 2 ~iIla~G--~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~---~~~--~v~~v~~ 69 (188)
T TIGR03310 2 AIILAAG--LSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLA---NHS--NITLVHN 69 (188)
T ss_pred eEEECCC--CcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhc---cCC--CeEEEEC
Confidence 7999999 9999975 8999999999999999988774 66666655443322221 122 3444433
Q ss_pred -CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCc
Q 015259 86 -DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGM 136 (410)
Q Consensus 86 -~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~ 136 (410)
....|.+++++.+.+... ..+.+++++||.++ ...+..+++.+......
T Consensus 70 ~~~~~g~~~si~~~l~~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 121 (188)
T TIGR03310 70 PQYAEGQSSSIKLGLELPV--QSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDE 121 (188)
T ss_pred cChhcCHHHHHHHHhcCCC--CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCc
Confidence 334688899998887211 24689999999974 34588888877654443
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=109.07 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=77.5
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEEEe-----eEECCCCEECCCcEEccCCCC
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVVTN-----AIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~~~ 368 (410)
+++++.|++++.|.+++.||++|.|++++.|.. .+||++|.|+++|.|.. ++|++++.|+.++++.+
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~---- 78 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG---- 78 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEEC----
Confidence 556667777777777888888888888888875 48999999999999985 89999999999999977
Q ss_pred CcceeeeEECCCCEECCCcEE-cceEEcCCcEEcc
Q 015259 369 NAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNV 402 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~ 402 (410)
++||++++|++++.+ .+++|++++.|..
T Consensus 79 ------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~ 107 (154)
T cd04650 79 ------AKVGNYVIVGMGAILLNGAKIGDHVIIGA 107 (154)
T ss_pred ------cEECCCCEEcCCCEEeCCCEECCCCEECC
Confidence 899999999999888 4555555555543
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.1e-13 Score=131.26 Aligned_cols=120 Identities=22% Similarity=0.237 Sum_probs=71.2
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEc----
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ---- 363 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---- 363 (410)
++.+.+++.||+++.|+++|.|. ++.||++|.|++++.|.+++|+++|.|+++++|. +++|+++|.|++++.+.
T Consensus 273 ~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~i 351 (451)
T TIGR01173 273 NVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARI 351 (451)
T ss_pred CeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEE
Confidence 44455555666666666666555 5666666666666666666666666665555555 34555444444433221
Q ss_pred ------------------------cCCC-----CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCc
Q 015259 364 ------------------------AEGD-----FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQE 407 (410)
Q Consensus 364 ------------------------~~~~-----~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~ 407 (410)
.+.- .....+ ++||++++||.++.+ .+++|++|++|..++|+.
T Consensus 352 g~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~-~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~ 430 (451)
T TIGR01173 352 GKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHK-TIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEG 430 (451)
T ss_pred CCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCC-CEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCC
Confidence 1100 000111 677888888877765 688999999999999987
Q ss_pred ccC
Q 015259 408 IIL 410 (410)
Q Consensus 408 ~~~ 410 (410)
.++
T Consensus 431 ~~~ 433 (451)
T TIGR01173 431 ALA 433 (451)
T ss_pred cEE
Confidence 653
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=109.67 Aligned_cols=97 Identities=28% Similarity=0.338 Sum_probs=74.6
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe-----eeEECCCCEECCCCEEE-----eeEECCCCEECCCcEEccCC
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-----SCIILDGVEIMENAVVT-----NAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~ 366 (410)
.||+++.|+++|.|.+++.||++|.|++++.|. ++.||++|.|++++.|. .+.|++++.|+.++.|.+.
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~- 82 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGP- 82 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCC-
Confidence 566666666666666677777777777777775 37899999999999984 5789999999999999876
Q ss_pred CCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 367 DFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
++||++|+||.++.+.+++|+.+..|..
T Consensus 83 --------~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~ 110 (167)
T cd00710 83 --------AYIGDNCFIGFRSVVFNAKVGDNCVIGH 110 (167)
T ss_pred --------EEECCCCEECCCCEEECCEECCCCEEcC
Confidence 8999999999998885555555555443
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=113.72 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=26.0
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||++++|+.++.+ +++.|++++.|..++++..+
T Consensus 151 ~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~~~~~~~ 192 (205)
T cd03352 151 TTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSIVPPGEY 192 (205)
T ss_pred cEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeECCCCCE
Confidence 677777777777776 57777788888888777654
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=108.40 Aligned_cols=96 Identities=24% Similarity=0.281 Sum_probs=75.6
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEE-----eeEECCCCEECCCcEEccCCC
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVT-----NAIVGWKSSIGRWSRVQAEGD 367 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~~ 367 (410)
.|++++.|.+.+.|-+++.||+++.|+++++|. .-.||+++.|.++|+|. .++||++++||.++.|++
T Consensus 13 ~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHG--- 89 (176)
T COG0663 13 KIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHG--- 89 (176)
T ss_pred CCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEE---
Confidence 344445555555555577777777777777775 56799999999999997 589999999999999999
Q ss_pred CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcc
Q 015259 368 FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNV 402 (410)
Q Consensus 368 ~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~ 402 (410)
|.|+++|.||-|++| .+|+|++|++|++
T Consensus 90 -------c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~ 124 (176)
T COG0663 90 -------CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTP 124 (176)
T ss_pred -------eEECCCcEEecCceEeCCcEECCCcEEccCCcccC
Confidence 999999999998888 4666667777666
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=96.70 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=52.9
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEE
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITIL 377 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i 377 (410)
|++++.|++++.|. ++.|+++|.|++++.|.+++|+++++|+++++|.+++|++++.|++++.|..+ ++|
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~---------~~v 71 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPG---------SLI 71 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCC---------CEE
Confidence 56666666666665 57777777777777777777777777777777777777777777776666655 566
Q ss_pred CCCCEEC
Q 015259 378 GEAVGVE 384 (410)
Q Consensus 378 ~~~~~i~ 384 (410)
++++.||
T Consensus 72 ~~~~~ig 78 (79)
T cd05787 72 SFGVVIG 78 (79)
T ss_pred eCCcEeC
Confidence 6666555
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-12 Score=110.94 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=73.1
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 366 (410)
...+.+++.+++++.|++++.|++++.||++|.|++++.|+ ++.|+++|.|+.++.+. +++|+++|.|+.++.+.++
T Consensus 90 ~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~- 168 (197)
T cd03360 90 SAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQG- 168 (197)
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCC-
Confidence 34556666777777777777777777777777777777775 56777777777777776 5777777777777777776
Q ss_pred CCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 367 DFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+.||+++.|++++++.+. +.+++++.
T Consensus 169 --------~~ig~~~~v~~~~~v~~~-~~~~~~~~ 194 (197)
T cd03360 169 --------VTIGAGAIIGAGAVVTKD-VPDGSVVV 194 (197)
T ss_pred --------CEECCCCEECCCCEEcCC-CCCCCEEE
Confidence 777887777777777553 45555553
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=103.87 Aligned_cols=99 Identities=23% Similarity=0.244 Sum_probs=56.6
Q ss_pred cCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCccee
Q 015259 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLG 373 (410)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~ 373 (410)
++++|++++.|++++.|+++++||++|.|++++.+.++.+ .+..+..++.+.+++|++++.|+.++.+..+
T Consensus 15 ~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~-------- 85 (119)
T cd03358 15 NDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWELKGTTVKRGASIGANATILPG-------- 85 (119)
T ss_pred CCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-CccccccccccCCcEECCCcEECcCCEEeCC--------
Confidence 3333333333333333333344444444444444333222 1222223444567888888888888888776
Q ss_pred eeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 374 ITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 374 ~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
+.|++++.|++++.+..+ +.+++++..+
T Consensus 86 -~~ig~~~~i~~~~~v~~~-i~~~~~~~G~ 113 (119)
T cd03358 86 -VTIGEYALVGAGAVVTKD-VPPYALVVGN 113 (119)
T ss_pred -cEECCCCEEccCCEEeCc-CCCCeEEecC
Confidence 888888888888888664 6777766554
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-12 Score=112.60 Aligned_cols=104 Identities=22% Similarity=0.275 Sum_probs=77.9
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 366 (410)
.+.+.+++.|++++.|++++.|++++.||++|.|++++.|. ++.|++++.++.++.+. +++|+++++|+.++.+.++
T Consensus 93 ~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~- 171 (201)
T TIGR03570 93 SAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQG- 171 (201)
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCC-
Confidence 45566667777777777777777777777777777777775 57788888888888777 6788888888888888776
Q ss_pred CCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 367 DFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+.|+++++|++++++.++ +.+++++..
T Consensus 172 --------~~i~~~~~i~~~~~v~~~-~~~~~~~~g 198 (201)
T TIGR03570 172 --------VTIGAGAIVGAGAVVTKD-IPDGGVVVG 198 (201)
T ss_pred --------CEECCCCEECCCCEECCc-CCCCCEEEe
Confidence 788888888888888654 566666544
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=123.66 Aligned_cols=54 Identities=31% Similarity=0.338 Sum_probs=25.2
Q ss_pred EccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEE
Q 015259 292 IIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVV 345 (410)
Q Consensus 292 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 345 (410)
+.+++.||+++.|+++|.|++++.||++|.|+++++|. ++.|+++|.|+++++|
T Consensus 127 I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I 181 (343)
T PRK00892 127 IGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI 181 (343)
T ss_pred EeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEE
Confidence 33334444444444444444444444444444444443 2335555555555555
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-12 Score=105.28 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=37.5
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEEC
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVG 351 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~ 351 (410)
++.+.++|++++.|++++.|.+.+.|+.+++||+++.|. ++.|++++.|+++|.|. ++.++
T Consensus 3 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred ccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 456666777777777777776666666666666666664 35555555555555544 44444
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-12 Score=122.49 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=73.6
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeee
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGIT 375 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~ 375 (410)
+.++.++.|||-+.++|++.|+++++||..|.+.++.||+++.+++=++|.++.||.++.||+++..-+.... -+.- +
T Consensus 321 s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~-nK~~-T 398 (460)
T COG1207 321 STVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGK-NKFK-T 398 (460)
T ss_pred cEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCc-ccce-e
Confidence 3444455555555555555566666666666666666666666666666666666666666666555442111 1112 8
Q ss_pred EECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 376 ILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 376 ~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+||+++.||+++.+ .+..|++|++|+.|||+.-+
T Consensus 399 ~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aL 439 (460)
T COG1207 399 IIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGAL 439 (460)
T ss_pred eecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCce
Confidence 99999999999998 68899999999999998643
|
|
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.3e-12 Score=114.68 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=46.1
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-------------eeEECCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-------------NAIVGWKS 354 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~~~~ 354 (410)
++.+.+.+.|++++.|+++|.|++++.||++|+|++++.|. ++.||++|.|++++.|. ..+||+++
T Consensus 5 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~ 84 (255)
T PRK12461 5 TAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRN 84 (255)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCce
Confidence 34555555565666666666666666666666666666664 56666666666666664 35566666
Q ss_pred EECCCcEEcc
Q 015259 355 SIGRWSRVQA 364 (410)
Q Consensus 355 ~i~~~~~i~~ 364 (410)
.|+++++|..
T Consensus 85 ~I~e~vtI~~ 94 (255)
T PRK12461 85 VIREGVTIHR 94 (255)
T ss_pred EECCccEEec
Confidence 6666666654
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-12 Score=121.88 Aligned_cols=101 Identities=23% Similarity=0.291 Sum_probs=74.4
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 366 (410)
++.+.+.+++++++.|++++.|++++.||++|+|+++|.|. ++.||++|.|+++++|. ++.|+++|.|++++.|+...
T Consensus 106 ~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~ 185 (343)
T PRK00892 106 SAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDG 185 (343)
T ss_pred CcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccC
Confidence 56677777788888888888888888888888888888886 67788888888888887 46688888888888886421
Q ss_pred C----------CCcceeeeEECCCCEECCCcEE
Q 015259 367 D----------FNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 367 ~----------~~~~~~~~~i~~~~~i~~~~~v 389 (410)
+ .--+.|.++||+++.||+++++
T Consensus 186 f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I 218 (343)
T PRK00892 186 FGFANDRGGWVKIPQLGRVIIGDDVEIGANTTI 218 (343)
T ss_pred cCcccCCCceeeccccccEEECCCcEECCCcEE
Confidence 1 0011244777777777777766
|
|
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-12 Score=110.87 Aligned_cols=106 Identities=17% Similarity=0.293 Sum_probs=76.1
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
.+|.+|||||| .|+||+. .||+|++++|+|||+|+++.+.. ++|++....+.+. .++. .+
T Consensus 2 ~~~~~vILA~G--~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~~~~~~i~vv~~~~~~~~~--------~~~~--~~ 65 (193)
T PRK00317 2 PPITGVILAGG--RSRRMGG----VDKGLQELNGKPLIQHVIERLAPQVDEIVINANRNLARYA--------AFGL--PV 65 (193)
T ss_pred CCceEEEEcCC--CcccCCC----CCCceeEECCEEHHHHHHHHHhhhCCEEEEECCCChHHHH--------hcCC--cE
Confidence 36899999999 9999952 48999999999999999999875 7776654432221 1222 23
Q ss_pred eeC--CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHH
Q 015259 83 LRE--DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHR 131 (410)
Q Consensus 83 i~~--~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~ 131 (410)
+.. ....|+.++++.+.+... .+.++++.||.++ . ..+..+++.+.
T Consensus 66 v~~~~~~~~g~~~~i~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 66 IPDSLADFPGPLAGILAGLKQAR---TEWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred EeCCCCCCCCCHHHHHHHHHhcC---CCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 322 223688899998888654 4679999999985 3 34777776543
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=120.09 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=87.6
Q ss_pred EccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcc
Q 015259 292 IIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAK 371 (410)
Q Consensus 292 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~ 371 (410)
+...++++++++|++++.|. .|+||.+|.||++++|.+|+|++|++||+++.|++||||.++.||++|.+.+
T Consensus 331 ~g~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~n------- 402 (433)
T KOG1462|consen 331 VGADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKN------- 402 (433)
T ss_pred cchhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeee-------
Confidence 34578899999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEECCCCEECCCcEEcceEEcCC
Q 015259 372 LGITILGEAVGVEDEVVVTNSIVLPN 397 (410)
Q Consensus 372 ~~~~~i~~~~~i~~~~~v~~~~v~~~ 397 (410)
|+||.+=+|.++....+.++..+
T Consensus 403 ---C~Ig~~yvVeak~~~~~ev~~~~ 425 (433)
T KOG1462|consen 403 ---CIIGPGYVVEAKGKHGGEVLVSN 425 (433)
T ss_pred ---eEecCCcEEcccccccccEeecc
Confidence 99999999998888877776554
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-12 Score=112.47 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=3.0
Q ss_pred EcCCcEE
Q 015259 394 VLPNKTL 400 (410)
Q Consensus 394 v~~~~~v 400 (410)
|+++++|
T Consensus 225 vp~~svv 231 (269)
T TIGR00965 225 VPAGSVV 231 (269)
T ss_pred cCCCcEE
Confidence 3444444
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-12 Score=113.57 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=75.5
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEE-----------eeEECCCCEECCCcE
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVT-----------NAIVGWKSSIGRWSR 361 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~ 361 (410)
.+++++.|.+++.+.+++.||+++.|+++++|. ..+||++|.|+++|+|. +++|+++|.||++|.
T Consensus 61 ~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~ 140 (246)
T PLN02472 61 KVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSL 140 (246)
T ss_pred ccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcE
Confidence 356667777777777778888888888888775 26799999999999994 589999999999999
Q ss_pred EccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcc
Q 015259 362 VQAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNV 402 (410)
Q Consensus 362 i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~ 402 (410)
|.+ |+|+++|.||.+++| .+|+|+++++|.+
T Consensus 141 L~~----------~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~ 178 (246)
T PLN02472 141 LRS----------CTIEPECIIGQHSILMEGSLVETHSILEAGSVLPP 178 (246)
T ss_pred ECC----------eEEcCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence 976 788888888887777 3566666666663
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.4e-12 Score=106.35 Aligned_cols=95 Identities=20% Similarity=0.294 Sum_probs=74.1
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEEEe-----eEECCCCEECCCcEEccCCCC
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVVTN-----AIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~~~ 368 (410)
+++++.|++++.|.+++.||++|.|++++.|.. ++||++|.|+++|+|.. ++|++++.|+.++.+.+
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~---- 77 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG---- 77 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEee----
Confidence 455666666666666778888888888887764 58999999999999996 59999999999999987
Q ss_pred CcceeeeEECCCCEECCCcEEc-------ceEEcCCcEEcc
Q 015259 369 NAKLGITILGEAVGVEDEVVVT-------NSIVLPNKTLNV 402 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v~-------~~~v~~~~~v~~ 402 (410)
++|+++++|++++.+. ++.|++++.|.+
T Consensus 78 ------~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~ 112 (153)
T cd04645 78 ------CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPP 112 (153)
T ss_pred ------eEECCCCEECCCCEEcCCCEECCCCEECCCCEECC
Confidence 7888888888877773 445555555544
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-12 Score=94.40 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=70.5
Q ss_pred EECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc-ceE
Q 015259 315 SISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSI 393 (410)
Q Consensus 315 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~ 393 (410)
+||++++|++++.|.+++|+++|.|++++.|.+++|++++.|+++++|.+ ++|++++.|++++.+. +++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~----------~~i~~~~~i~~~~~i~~~~~ 70 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH----------SIVADGAVIGKGCTIPPGSL 70 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeC----------cEEcCCCEECCCCEECCCCE
Confidence 36888888899999999999999999999999999999999999999987 8999999999999994 788
Q ss_pred EcCCcEEc
Q 015259 394 VLPNKTLN 401 (410)
Q Consensus 394 v~~~~~v~ 401 (410)
+++++.|+
T Consensus 71 v~~~~~ig 78 (79)
T cd05787 71 ISFGVVIG 78 (79)
T ss_pred EeCCcEeC
Confidence 88888775
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.7e-12 Score=97.00 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=78.6
Q ss_pred ccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcc
Q 015259 293 IGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAK 371 (410)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~ 371 (410)
.+++++++++.|++++.|.++++||++|.|++++.|. +++||++|.|+. .|.+|+|++++.+++++.|..
T Consensus 9 ~g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~------- 79 (101)
T cd05635 9 DGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGH------- 79 (101)
T ss_pred CCCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEee-------
Confidence 3578999999999999999999999999999999997 599999999974 688999999999999999986
Q ss_pred eeeeEECCCCEECCCcEEcc
Q 015259 372 LGITILGEAVGVEDEVVVTN 391 (410)
Q Consensus 372 ~~~~~i~~~~~i~~~~~v~~ 391 (410)
++||+++.||+++..++
T Consensus 80 ---siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 80 ---SYLGSWCNLGAGTNNSD 96 (101)
T ss_pred ---eEECCCCEECCCceecc
Confidence 99999999999988753
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=108.76 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=67.8
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCC
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~ 368 (410)
..+.+.+++++++.|++++.|+++++|+++++||++|.|. +++|+.++.|++++ .|+.++.++.++.|+.+
T Consensus 88 ~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~-----~i~~~~~i~~~~~ig~~--- 159 (201)
T TIGR03570 88 TLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYV-----HIAPGVTLSGGVVIGEG--- 159 (201)
T ss_pred EEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCC-----EECCCCEEeCCcEECCC---
Confidence 4456666777777777766666666666666666666663 45555444444444 34445555555555554
Q ss_pred CcceeeeEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 369 NAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
|.||.++.|.+++.+ .+|+|+++++|..++++..+
T Consensus 160 ------~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~~~~~~~ 195 (201)
T TIGR03570 160 ------VFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGV 195 (201)
T ss_pred ------CEECCCCEEeCCCEECCCCEECCCCEECCcCCCCCE
Confidence 566666666666666 57888899999999888754
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-12 Score=93.84 Aligned_cols=77 Identities=25% Similarity=0.340 Sum_probs=70.6
Q ss_pred EECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcc-eE
Q 015259 315 SISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-SI 393 (410)
Q Consensus 315 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~-~~ 393 (410)
+||+++.|++++.|.+++|+++|.|++++.|.+++|++++.|+++++|.+ ++|++++.|++++.+.+ ++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~----------svv~~~~~i~~~~~i~~~~~ 70 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVD----------SIIGDNAVIGENVRVVNLCI 70 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEEC----------CEECCCCEECCCCEEcCCeE
Confidence 36788888888888889999999999999999999999999999999987 89999999999999976 99
Q ss_pred EcCCcEEc
Q 015259 394 VLPNKTLN 401 (410)
Q Consensus 394 v~~~~~v~ 401 (410)
+++++.|+
T Consensus 71 ig~~~~i~ 78 (79)
T cd03356 71 IGDDVVVE 78 (79)
T ss_pred ECCCeEEC
Confidence 99988775
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=107.51 Aligned_cols=105 Identities=22% Similarity=0.455 Sum_probs=76.3
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc---EEEecc-cchHHHHHHHHhhcccCCccEE
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR---IYLVGF-YEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~---i~vv~~-~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
+..|.+|||||| .++|| . +|+|++++|+|||+|+++.|.. .+++.. ..... + ..++ +.
T Consensus 2 ~~~~~~vILAGG--~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~~~vvi~~~~~~~~---~-----~~~g--~~ 63 (192)
T COG0746 2 MTPMTGVILAGG--KSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQVDVVVISANRNQGR---Y-----AEFG--LP 63 (192)
T ss_pred CCCceEEEecCC--ccccc-c-----ccccceeCCeEHHHHHHHHhcccCCEEEEeCCCchhh---h-----hccC--Cc
Confidence 347999999999 99999 5 8999999999999999999998 344433 33221 2 1122 44
Q ss_pred EeeCCCCC-CcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCC-hHHHHHHHH
Q 015259 82 YLREDKPH-GSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEMLDAHR 131 (410)
Q Consensus 82 ~i~~~~~~-g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~-l~~~l~~~~ 131 (410)
++...... |+..+++.+++... .+.+++++||+++ ..+ +..+++...
T Consensus 64 vv~D~~~~~GPL~Gi~~al~~~~---~~~~~v~~~D~P~i~~~lv~~l~~~~~ 113 (192)
T COG0746 64 VVPDELPGFGPLAGILAALRHFG---TEWVLVLPCDMPFIPPELVERLLSAFK 113 (192)
T ss_pred eeecCCCCCCCHHHHHHHHHhCC---CCeEEEEecCCCCCCHHHHHHHHHhhc
Confidence 44443333 99999999999886 4789999999996 333 455555443
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.3e-12 Score=98.37 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=66.3
Q ss_pred EECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCE
Q 015259 303 KIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVG 382 (410)
Q Consensus 303 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~ 382 (410)
.|++++.|. +++||++|+|+ ++.|.+|+|+++|.|+++++|.+|+|++++.|+.++.+.+ ++|++++.
T Consensus 3 ~i~~~~~i~-~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~----------siig~~~~ 70 (104)
T cd04651 3 YIGRRGEVK-NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRR----------AIIDKNVV 70 (104)
T ss_pred eecCCCEEE-eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEe----------EEECCCCE
Confidence 445555554 78888999998 8999999999999999999999999999999999999976 89999999
Q ss_pred ECCCcEEcce
Q 015259 383 VEDEVVVTNS 392 (410)
Q Consensus 383 i~~~~~v~~~ 392 (410)
|++++.+.+.
T Consensus 71 Ig~~~~v~~~ 80 (104)
T cd04651 71 IPDGVVIGGD 80 (104)
T ss_pred ECCCCEECCC
Confidence 9999988544
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-12 Score=125.58 Aligned_cols=120 Identities=20% Similarity=0.255 Sum_probs=85.1
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCc-------
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWS------- 360 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~------- 360 (410)
++.+.+++.||+++.|+++|.|. +++||++|+|++++.|.+++|+++|.|++++++. ++.|++++.||+++
T Consensus 280 ~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~i 358 (459)
T PRK14355 280 GVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVM 358 (459)
T ss_pred CcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEE
Confidence 56677778888888888888886 7899999999999999888888888888777776 55555555554432
Q ss_pred ---------------------EEccCCC---C-CcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCcc
Q 015259 361 ---------------------RVQAEGD---F-NAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEI 408 (410)
Q Consensus 361 ---------------------~i~~~~~---~-~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~ 408 (410)
.|+.+.- . ......++||++|+||.++.+ .+++|+++++|..++++..
T Consensus 359 g~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v~~~~ 438 (459)
T PRK14355 359 GEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDVPPDS 438 (459)
T ss_pred CCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccCCCCc
Confidence 2222210 0 011112677888888887766 6888889999999988865
Q ss_pred c
Q 015259 409 I 409 (410)
Q Consensus 409 ~ 409 (410)
+
T Consensus 439 ~ 439 (459)
T PRK14355 439 L 439 (459)
T ss_pred E
Confidence 4
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=108.72 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=87.0
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE----------------------
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT---------------------- 346 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~---------------------- 346 (410)
++.+. ++.||+++.|+++|.|. +++||++|.|++++.|.++.||++|.|++++.|.
T Consensus 14 ~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~ 91 (204)
T TIGR03308 14 TAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYF 91 (204)
T ss_pred CcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccccccc
Confidence 56664 57899999999999998 8999999999999999999999999999999884
Q ss_pred ----------------eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 347 ----------------NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 347 ----------------~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
+++|+++|.||.++.|.++ +.||+++.|+++++|.+. |.+++++..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~g---------v~Ig~~~~I~~gs~v~~~-i~~~~~~~G~ 154 (204)
T TIGR03308 92 DDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPG---------VTIGNGAVIAAGAVVTKD-VAPYTIVAGV 154 (204)
T ss_pred ccccccccccccccCCCeEECCCCEECCCCEECCC---------CEECCCCEECCCCEECCC-CCCCcEEEec
Confidence 5678888888888888877 899999999999998654 6777776544
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-12 Score=126.39 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=69.6
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeee
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGIT 375 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~ 375 (410)
+.|++++.|+++|.|.+++.||++|+|++++.|.+++|++++.|++++.+.+++|+++|.||+++.+.... .....+ +
T Consensus 314 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~-~~~~~~-~ 391 (450)
T PRK14360 314 SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYD-GVKKHR-T 391 (450)
T ss_pred ccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceecccc-ccccCC-c
Confidence 33445555555555555555555555555555555666666666655555566677777777766654311 001111 6
Q ss_pred EECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 376 ILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 376 ~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+||++|+||.++.+ ++++|++|++|..++|+..+
T Consensus 392 ~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~ 432 (450)
T PRK14360 392 VIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSL 432 (450)
T ss_pred EeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCE
Confidence 77777777777766 67888999999999998765
|
|
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=110.49 Aligned_cols=210 Identities=13% Similarity=0.163 Sum_probs=125.3
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCCc--
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRI-- 78 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~-- 78 (410)
.+.+|||||| .|+||+. ..||+|++++|+|||.|+++.+.. ++|++.... ..+.+++.+ ++.
T Consensus 2 ~~~~iIlAaG--~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~----~~~~~ 72 (230)
T PRK13385 2 NYELIFLAAG--QGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ----LNVAD 72 (230)
T ss_pred ceEEEEECCe--eccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh----cCcCC
Confidence 3789999999 9999974 579999999999999999999864 666665432 333344433 221
Q ss_pred -cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceE
Q 015259 79 -PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGEL 155 (410)
Q Consensus 79 -~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v 155 (410)
++.++. ...+..++++.+.+.+.. .+.++++.||.++ ...+.++++.+.+.++. +..... . ..+
T Consensus 73 ~~~~~v~--~g~~r~~sv~~gl~~~~~--~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~--~-----dti 139 (230)
T PRK13385 73 QRVEVVK--GGTERQESVAAGLDRIGN--EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEV--K-----DTV 139 (230)
T ss_pred CceEEcC--CCchHHHHHHHHHHhccC--CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEec--c-----ceE
Confidence 344443 333456899998887742 2457888999996 34488898887654432 233332 1 122
Q ss_pred EEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 156 VADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 156 ~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
... +++.+....++ + .-+.--+.|.|+.+.+....+.... +.+.+ +|-.
T Consensus 140 ~~~-~~~~~~~~i~r--~--~~~~~qtpq~f~~~~l~~~~~~~~~-------------------------~~~~~-td~~ 188 (230)
T PRK13385 140 KRV-KDKQVIETVDR--N--ELWQGQTPQAFELKILQKAHRLASE-------------------------QQFLG-TDEA 188 (230)
T ss_pred EEE-cCCeeEeccCH--H--HHhhhcCCceeeHHHHHHHHHHHHh-------------------------cCCCc-CcHH
Confidence 221 13344333221 1 1111224677777654322221100 11112 3333
Q ss_pred cccc-CCCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 236 SPLA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 236 ~~l~-~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
..+. .+..+..++.+.....|+||+|+..|...+.
T Consensus 189 ~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 189 SLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred HHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 3232 3457888887777889999999999876654
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=107.14 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=64.1
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCC
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~ 368 (410)
..+.+.+.+++++.+++++.|.++++|+++++||++|.|. +++|++++.|+++|.| +.++.++.++.|+.+
T Consensus 85 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i-----~~~~~i~~~~~ig~~--- 156 (197)
T cd03360 85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHI-----APGVVLSGGVTIGEG--- 156 (197)
T ss_pred eEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEE-----CCCCEEcCCcEECCC---
Confidence 3455566666666676666666666666666666666663 4555555555555444 333333334444443
Q ss_pred CcceeeeEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 369 NAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
|.||.++.|.+++.+ .+++|+++++|.+++++..+
T Consensus 157 ------~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~~~~~~~ 192 (197)
T cd03360 157 ------AFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSV 192 (197)
T ss_pred ------CEECCCCEEcCCCEECCCCEECCCCEEcCCCCCCCE
Confidence 455555555555555 56778899999998887654
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-11 Score=110.87 Aligned_cols=127 Identities=20% Similarity=0.314 Sum_probs=84.4
Q ss_pred CCCC-CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccc-hHHHHHHHHhhc
Q 015259 2 GSSE-DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYE-EREFALYVSSIS 73 (410)
Q Consensus 2 ~~~~-~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~-~~~i~~~~~~~~ 73 (410)
+.+| +..+.+|||||| .|+||+. ..||.|++++|+|+|+|+++.+.. |+|++... .+.+++.+..
T Consensus 17 ~~~~~~~~i~aIILAAG--~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~-- 89 (252)
T PLN02728 17 SAVVKEKSVSVILLAGG--VGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN-- 89 (252)
T ss_pred ccccccCceEEEEEccc--ccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh--
Confidence 3344 345789999999 9999964 679999999999999999999874 66666543 3344444332
Q ss_pred ccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCC--ccc--CCChHHHHHHHHhcCCceEEEEEec
Q 015259 74 NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD--VCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (410)
Q Consensus 74 ~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D--~i~--~~~l~~~l~~~~~~~~~~~l~~~~~ 144 (410)
++..+.++ ....+..++++.+.+.+.. +..+|+.+| .++ ...+..+++...+.+ +.+...+.
T Consensus 90 --~~~~i~~v--~gg~~r~~SV~~gl~~l~~---~~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~~~ 155 (252)
T PLN02728 90 --IDVPLKFA--LPGKERQDSVFNGLQEVDA---NSELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGVPV 155 (252)
T ss_pred --cCCceEEc--CCCCchHHHHHHHHHhccC---CCCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEeecc
Confidence 33345544 2344568899999888742 334556666 564 334788888776544 33444443
|
|
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=106.88 Aligned_cols=103 Identities=21% Similarity=0.380 Sum_probs=73.4
Q ss_pred CCCCCCCceEEEEEecCCCCCCccccCCCCCCccccccCC-ccchhhhHhhccc----EEEecccchHHHHHHHHhhccc
Q 015259 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGG-QPMVHHPISACKR----IYLVGFYEEREFALYVSSISNE 75 (410)
Q Consensus 1 ~~~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g-~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~ 75 (410)
|..+|..++.+|||||| .|+||+. ||+|++++| +|+|+|+++.+.. ++|++.. +.+ .
T Consensus 1 ~~~~~~~~i~~vILAgG--~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~~~~vvvv~~~--~~~----~----- 62 (196)
T PRK00560 1 MKNPMIDNIPCVILAGG--KSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKLFKKVYISTKD--KKF----E----- 62 (196)
T ss_pred CCCccccCceEEEECCc--ccccCCC-----CceEEEeCCCCcHHHHHHHHHHHhCCEEEEEECc--hhc----c-----
Confidence 66777778999999999 9999976 999999999 9999999999986 6666653 111 0
Q ss_pred CCccEEEee--CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCC-hHHH
Q 015259 76 LRIPVRYLR--EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEM 126 (410)
Q Consensus 76 ~~~~i~~i~--~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~-l~~~ 126 (410)
..+.++. .....|+..++..+..... .+.++|+.||+++ +.+ +..+
T Consensus 63 --~~~~~v~d~~~~~~gpl~gi~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 63 --FNAPFLLEKESDLFSPLFGIINAFLTLQ---TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred --cCCcEEecCCCCCCCcHHHHHHHHHhcC---CCeEEEEecCcCcCCHHHHHHH
Confidence 1123332 2334577777766555443 4789999999985 333 4444
|
|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-12 Score=108.41 Aligned_cols=112 Identities=23% Similarity=0.348 Sum_probs=82.3
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
+.+|||||| .|+||++ ||+|++++|+|||+|+++.+.. ++|++........+++. .++ +.++
T Consensus 1 ~~~vIlAgG--~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~----~~~--~~~~ 67 (186)
T cd04182 1 IAAIILAAG--RSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALA----GLP--VVVV 67 (186)
T ss_pred CeEEEECCC--CCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc----CCC--eEEE
Confidence 468999999 9999987 9999999999999999999875 77777665444444332 223 3333
Q ss_pred e-CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcC
Q 015259 84 R-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYG 134 (410)
Q Consensus 84 ~-~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~ 134 (410)
. +....|++++++.+++.+.. ..+.+++++||+++ ...+..+++.+.+..
T Consensus 68 ~~~~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 120 (186)
T cd04182 68 INPDWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDG 120 (186)
T ss_pred eCCChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCC
Confidence 2 33456899999999888752 24789999999974 445788887765433
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=123.15 Aligned_cols=117 Identities=18% Similarity=0.122 Sum_probs=66.0
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCE-------------
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSS------------- 355 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~------------- 355 (410)
+.+.+++.||+++.|+++|.|. +++||++|.|++++.|.+|+|+++|+|++++.|. ++.+++++.
T Consensus 278 ~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~ 356 (456)
T PRK09451 278 VIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLG 356 (456)
T ss_pred eEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeC
Confidence 4444455555555555555554 5555555555555555555555555555555554 344444433
Q ss_pred ---------------------ECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCc
Q 015259 356 ---------------------IGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQE 407 (410)
Q Consensus 356 ---------------------i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~ 407 (410)
||+++.+.... ......++||++|+||.++.+ .+++|++|++|.+++++.
T Consensus 357 ~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~--~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~ 434 (456)
T PRK09451 357 KGSKAGHLTYLGDAEIGDNVNIGAGTITCNYD--GANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAEN 434 (456)
T ss_pred CCCccCccccccccEECCCCEEcCCeEEeccc--CcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCC
Confidence 33333322110 000112677788887777776 688899999999999887
Q ss_pred cc
Q 015259 408 II 409 (410)
Q Consensus 408 ~~ 409 (410)
.+
T Consensus 435 ~~ 436 (456)
T PRK09451 435 EL 436 (456)
T ss_pred CE
Confidence 54
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9e-11 Score=100.52 Aligned_cols=225 Identities=16% Similarity=0.180 Sum_probs=148.6
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
++.+||+|-= .+|||.. |||..|+|+|||.|+.+...+ -++|.-+ ++.+.+++++ +|.++..-
T Consensus 3 ~~~viIPAR~--~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATD-de~I~~av~~----~G~~avmT 69 (247)
T COG1212 3 KFVVIIPARL--ASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATD-DERIAEAVQA----FGGEAVMT 69 (247)
T ss_pred ceEEEEecch--hcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcC-CHHHHHHHHH----hCCEEEec
Confidence 6889999998 8999977 999999999999999999886 3444433 3455666654 45555555
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--CChHHHHHHHHhcCCceEEEEEecC-ccc--ccccceEEEc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHRNYGGMGTILVIKVS-AES--ASQFGELVAD 158 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--~~l~~~l~~~~~~~~~~~l~~~~~~-~~~--~~~~~~v~~d 158 (410)
..+...|| +.+..+.+.+.-...+-++=+-||.++- ..+..+++...+.+++++.+..+.. .++ ...--.+..|
T Consensus 70 ~~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d 148 (247)
T COG1212 70 SKDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLD 148 (247)
T ss_pred CCCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEc
Confidence 55667777 4555555555322234556678999863 3478888877766666555555542 222 1222335567
Q ss_pred CCCCcEEEEecCCCCc-------cccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeec
Q 015259 159 PDTNELLHYTEKPETF-------VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLD 231 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~-------~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (410)
.+++-+.|...|-.. ..-+...|+|.|++.+++.+........+.. -+
T Consensus 149 -~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~----------------------E~-- 203 (247)
T COG1212 149 -KEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKI----------------------ES-- 203 (247)
T ss_pred -CCCcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHH----------------------HH--
Confidence 568999998875311 2446678999999999887776543322110 00
Q ss_pred cchhccccCCCceeEEecccee-eecCCccchhhhhHHHHh
Q 015259 232 QDILSPLAGKKQLYTYETMDFW-EQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 232 ~d~l~~l~~~~~i~~~~~~g~~-~~i~t~~~~~~an~~~~~ 271 (410)
-+-|+.|-.+.+|.+....... ..|||++|+.++.+.+..
T Consensus 204 LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 204 LEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred HHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 2334444456688888877655 889999999998876643
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=106.19 Aligned_cols=76 Identities=28% Similarity=0.367 Sum_probs=44.2
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-------eeEECCCCEECCCCEE-------------EeeEE
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------SCIILDGVEIMENAVV-------------TNAIV 350 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------~~~i~~~~~i~~~~~i-------------~~~~i 350 (410)
.|+|.+.|.|+|.|+++++|++.++||++++|+++++|. .+.||.++.|-..+.| ...+|
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence 344555555555555555555555555555554444443 3555555555555555 24788
Q ss_pred CCCCEECCCcEEccCC
Q 015259 351 GWKSSIGRWSRVQAEG 366 (410)
Q Consensus 351 ~~~~~i~~~~~i~~~~ 366 (410)
|+++.|.++++|..+.
T Consensus 85 G~~n~IRE~vTi~~GT 100 (260)
T COG1043 85 GDNNTIREFVTIHRGT 100 (260)
T ss_pred CCCCeEeeEEEEeccc
Confidence 8888888888887754
|
|
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=100.59 Aligned_cols=105 Identities=24% Similarity=0.404 Sum_probs=84.7
Q ss_pred eEEEEEecCCCCCCccc-cCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFR-PLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~-~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|.+||+||| +|+||. + =|||++++|+|||+|+++.+.+ |++....+....+.++.+ ++ ++++
T Consensus 1 m~~iiMAGG--rGtRmg~~-----EKPlleV~GkpLI~~v~~al~~~~d~i~v~isp~tp~t~~~~~~----~g--v~vi 67 (177)
T COG2266 1 MMAIIMAGG--RGTRMGRP-----EKPLLEVCGKPLIDRVLEALRKIVDEIIVAISPHTPKTKEYLES----VG--VKVI 67 (177)
T ss_pred CceEEecCC--cccccCCC-----cCcchhhCCccHHHHHHHHHHhhcCcEEEEeCCCCHhHHHHHHh----cC--ceEE
Confidence 568999999 999998 5 5999999999999999999998 888888777788888765 23 5555
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--CChHHHHHHHH
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHR 131 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--~~l~~~l~~~~ 131 (410)
. ....|...-+..+.+.+. .++|++++|+++- ..+..+++.+.
T Consensus 68 ~-tpG~GYv~Dl~~al~~l~----~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 68 E-TPGEGYVEDLRFALESLG----TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred E-cCCCChHHHHHHHHHhcC----CceEEEecccccCCHHHHHHHHHHHh
Confidence 4 445678889999999886 5999999999863 23666666554
|
|
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=103.99 Aligned_cols=199 Identities=15% Similarity=0.083 Sum_probs=129.4
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEee-
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLR- 84 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~- 84 (410)
|||+|+| .++||. .|.+++++|+|||.|+++.+.+ .++|.... +.+.+..+ +++..+.+..
T Consensus 2 aiIpArG--~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~-~~i~~~a~----~~g~~v~~~r~ 68 (222)
T TIGR03584 2 AIIPARG--GSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD-EEIAEVAK----SYGASVPFLRP 68 (222)
T ss_pred EEEccCC--CCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC-HHHHHHHH----HcCCEeEEeCh
Confidence 7999999 999994 4999999999999999999987 33333333 34444443 3455554432
Q ss_pred ---CCCCCCcHHHHHHhHHHhcc-cCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 85 ---EDKPHGSAGALYNFRDLIME-DNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 85 ---~~~~~g~~~~l~~~~~~l~~-~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
.....|..++++.+.+.+.. ...+.++++.||.++ ..++..+++.+.+.+++..+.+.+. ..+..+.. ..+
T Consensus 69 ~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~--~~~~~~~~-~~~ 145 (222)
T TIGR03584 69 KELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSF--AFPIQRAF-KLK 145 (222)
T ss_pred HHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeecc--CCChHHhe-EEC
Confidence 13466788999998887742 124679999999996 3569999998887667766666554 22222222 333
Q ss_pred CCCCcEEEEecC------CCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeecc
Q 015259 159 PDTNELLHYTEK------PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQ 232 (410)
Q Consensus 159 ~~~~~v~~i~ek------p~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (410)
+++++..+... .+.+.....+..+|+++++.+..-.
T Consensus 146 -~~g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~------------------------------------- 187 (222)
T TIGR03584 146 -ENGGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESG------------------------------------- 187 (222)
T ss_pred -CCCcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcC-------------------------------------
Confidence 34555444321 1122233457899999998763210
Q ss_pred chhccccCCCceeEEecc-ceeeecCCccchhhhhHH
Q 015259 233 DILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSGL 268 (410)
Q Consensus 233 d~l~~l~~~~~i~~~~~~-g~~~~i~t~~~~~~an~~ 268 (410)
..+ .+.+..|..+ ....||++++|+..|...
T Consensus 188 ~~~-----~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 188 PIF-----SPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred Ccc-----CCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 011 3455666554 358999999999887653
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=121.26 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=71.4
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeee
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGIT 375 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~ 375 (410)
+.|++++.|++++.|.++++||+++.||.++.+.+++|++++.|++.+.+.+++|+++|.||.++.+.+... ... +.+
T Consensus 323 ~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~-~~~-~~~ 400 (482)
T PRK14352 323 SEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDG-VNK-HRT 400 (482)
T ss_pred CEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEecccc-ccC-CCC
Confidence 334444444444444444555555555555555556666666666666666777888888888777654211 111 127
Q ss_pred EECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 376 ILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 376 ~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+||++++||.++.+ .+++|++|++|..++++..+
T Consensus 401 ~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~~ 441 (482)
T PRK14352 401 TIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGAL 441 (482)
T ss_pred eECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCcE
Confidence 88888888888776 68889999999999888753
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=120.95 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=77.5
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceee
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGI 374 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~ 374 (410)
++.|++++.|+++|.|.+++.||++|+|+.++.|.+++|++++.+++.+.+.+++|+++|.||.++.+.+... .... .
T Consensus 316 ~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~-~~~~-~ 393 (458)
T PRK14354 316 ESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDG-KNKF-K 393 (458)
T ss_pred CCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeeccccc-cccc-C
Confidence 3456666666666666666777777777777777777777777777777777777777777777766643210 0011 1
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
++||++++||.++.+ ++++|++|++|..++|+..+
T Consensus 394 ~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~ 435 (458)
T PRK14354 394 TIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDAL 435 (458)
T ss_pred CEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCE
Confidence 667777777777665 68889999999999998754
|
|
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-11 Score=106.22 Aligned_cols=111 Identities=23% Similarity=0.380 Sum_probs=82.3
Q ss_pred CCCCCCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccC
Q 015259 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNEL 76 (410)
Q Consensus 1 ~~~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~ 76 (410)
|+++| .+.+|||||| .|+||+. ||+|++++|+|||+|+++.+.. ++|++... +.+.....
T Consensus 2 ~~~~~--~~~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~~~~ivvv~~~~-~~~~~~~~------ 65 (200)
T PRK02726 2 KTVKN--NLVALILAGG--KSSRMGQ-----DKALLPWQGVPLLQRVARIAAACADEVYIITPWP-ERYQSLLP------ 65 (200)
T ss_pred CCcCC--CceEEEEcCC--CcccCCC-----CceeeEECCEeHHHHHHHHHHhhCCEEEEECCCH-HHHHhhcc------
Confidence 56666 6899999999 9999975 8999999999999999999976 77776532 23222211
Q ss_pred CccEEEee-CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHH
Q 015259 77 RIPVRYLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHR 131 (410)
Q Consensus 77 ~~~i~~i~-~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~ 131 (410)
..+.++. .....|..++++.+.+.+. .+.++|+.||.++ . ..+..+++...
T Consensus 66 -~~~~~i~~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 66 -PGCHWLREPPPSQGPLVAFAQGLPQIK---TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred -CCCeEecCCCCCCChHHHHHHHHHhCC---CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 1344443 2445789999999999885 3789999999985 3 34777777653
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-11 Score=120.90 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=50.0
Q ss_pred cEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE----
Q 015259 314 VSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV---- 389 (410)
Q Consensus 314 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v---- 389 (410)
+.||++|+||+++.+.+++|++++.+++.+.+.+++|+++|.||+++.+.... ......++||++++||.++++
T Consensus 325 ~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~--~~~~~~~~Igd~~~ig~~~~i~~gv 402 (448)
T PRK14357 325 TVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYD--GKKKNPTFIEDGAFIGSNSSLVAPV 402 (448)
T ss_pred ccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCccccccc--ccccCCcEECCCCEECCCCEEeCCc
Confidence 33333333333333333344444444333334444555555555544432110 000011677887777777766
Q ss_pred ---cceEEcCCcEEcccCCCccc
Q 015259 390 ---TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 390 ---~~~~v~~~~~v~~~~~~~~~ 409 (410)
+++.|++|++|.+++++..+
T Consensus 403 ~Ig~~~~i~ag~~v~~~v~~~~~ 425 (448)
T PRK14357 403 RIGKGALIGAGSVITEDVPPYSL 425 (448)
T ss_pred EECCCCEEcCCCEECCcCCCCcE
Confidence 68888999999999988754
|
|
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-11 Score=105.28 Aligned_cols=102 Identities=25% Similarity=0.427 Sum_probs=77.6
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEee
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~ 84 (410)
+.+|||||| .|+||++ ||+|++++|+|||+|+++.+.. |+|++...... + . ..+ +.++.
T Consensus 1 ~~~iILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~~~~iivv~~~~~~~---~-~----~~~--~~~v~ 63 (181)
T cd02503 1 ITGVILAGG--KSRRMGG-----DKALLELGGKPLLEHVLERLKPLVDEVVISANRDQER---Y-A----LLG--VPVIP 63 (181)
T ss_pred CcEEEECCC--ccccCCC-----CceeeEECCEEHHHHHHHHHHhhcCEEEEECCCChHH---H-h----hcC--CcEee
Confidence 468999999 9999986 9999999999999999999986 77777665433 1 1 122 33443
Q ss_pred -CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHH
Q 015259 85 -EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAH 130 (410)
Q Consensus 85 -~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~ 130 (410)
+....|..++++.+++.+. .+.++++.||+++ ...+..+++.+
T Consensus 64 ~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 64 DEPPGKGPLAGILAALRAAP---ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCCCCHHHHHHHHHhcC---CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 2356789999999988875 4789999999985 33477777655
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=93.38 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=59.2
Q ss_pred EccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-----eeEECCCCEECCCCEEE-----e----eEECCCCEEC
Q 015259 292 IIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-----SCIILDGVEIMENAVVT-----N----AIVGWKSSIG 357 (410)
Q Consensus 292 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~-----~----~~i~~~~~i~ 357 (410)
+.+.+++.+++.|++|+.|.++++|..+++||+++.|. +++|+++|.|++++.|. . +.|+++|+||
T Consensus 4 i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG 83 (147)
T cd04649 4 IADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLG 83 (147)
T ss_pred ecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEEC
Confidence 44555555666666666666556666666666655554 46678888888888876 2 5677777777
Q ss_pred CCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 358 RWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 358 ~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.++.| + +.||+++.||+|++|
T Consensus 84 ~ga~I-g----------v~IG~~~vIGaGsvV 104 (147)
T cd04649 84 ANSGI-G----------ISLGDNCIVEAGLYV 104 (147)
T ss_pred CCCEE-e----------EEECCCCEECCCCEE
Confidence 77777 3 788888888888887
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-11 Score=102.22 Aligned_cols=96 Identities=19% Similarity=0.168 Sum_probs=67.8
Q ss_pred eEECCCCEECCCcEEC--CCcEECCCcEECCCCEEe---eeEECCCCEECCCCEEE----------------eeEECCCC
Q 015259 296 VYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLI---SCIILDGVEIMENAVVT----------------NAIVGWKS 354 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~----------------~~~i~~~~ 354 (410)
+.||+++.|.+++.|. .++.||++|.|++++.|. .++||++|.|++++.|. ..+|+++|
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~ 131 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGC 131 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCc
Confidence 3555555566655554 257788888888888885 57788888888888773 25788888
Q ss_pred EECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 355 ~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
.||.++.|.++ +.||+++.|++++++.+. +.+++++.
T Consensus 132 ~Ig~~a~I~~G---------v~Ig~~~vIga~svV~~~-v~~~~v~~ 168 (182)
T PRK10502 132 WLAADVFVAPG---------VTIGSGAVVGARSSVFKS-LPANTICR 168 (182)
T ss_pred EEcCCCEEcCC---------CEECCCCEECCCCEEecc-cCCCcEEE
Confidence 88888888776 788888888888877442 44555443
|
|
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-11 Score=104.49 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=75.4
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEee
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~ 84 (410)
.+|||||| .|+||+. ||.|++++|+|||+|+++.+.+ ++|++....+.+.......... ..+.++.
T Consensus 2 ~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~--~~~~~~~ 72 (190)
T TIGR03202 2 VAIYLAAG--QSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLAD--ERIMLVC 72 (190)
T ss_pred eEEEEcCC--ccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhcC--CCeEEEE
Confidence 58999999 9999986 8999999999999999976543 6666654432221111110011 1234332
Q ss_pred -CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHH
Q 015259 85 -EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHR 131 (410)
Q Consensus 85 -~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~ 131 (410)
++...|.+++++.+++.+.....+.++++.||.++ . ..+..+++...
T Consensus 73 ~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~ 122 (190)
T TIGR03202 73 CRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAK 122 (190)
T ss_pred CCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHh
Confidence 34445888999999887642234789999999995 3 33677776544
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-11 Score=119.19 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=86.6
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEcc---
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA--- 364 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~--- 364 (410)
++.+.+++.|++++.|+++|.|. +++||++|.|++++.|.+++|++++.|++++.+. +++|++++.|++++.|.+
T Consensus 282 ~~~I~~~v~Ig~~~~I~~~~~i~-~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i 360 (481)
T PRK14358 282 GVLLRGQTRVADGVTIGAYSVVT-DSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARL 360 (481)
T ss_pred CcEEeCCcEECCCCEECCCCEEe-eeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCcee
Confidence 56666777778888888888885 7899999999999999999999999999999997 799999999999766533
Q ss_pred --CCC--CCcceeeeEECCCCEECCCcEEc--------ceEEcCCcEEccc
Q 015259 365 --EGD--FNAKLGITILGEAVGVEDEVVVT--------NSIVLPNKTLNVS 403 (410)
Q Consensus 365 --~~~--~~~~~~~~~i~~~~~i~~~~~v~--------~~~v~~~~~v~~~ 403 (410)
+.. +....+.++||++|.||+++++. +++|+.++.|+.+
T Consensus 361 ~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~ 411 (481)
T PRK14358 361 DAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSN 411 (481)
T ss_pred cCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCC
Confidence 211 22334558888888888888773 2455555555443
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=94.16 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=17.5
Q ss_pred eEECCCCEECCCcEE-----cceEEcCCcEEccc
Q 015259 375 TILGEAVGVEDEVVV-----TNSIVLPNKTLNVS 403 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-----~~~~v~~~~~v~~~ 403 (410)
+.||++|+||+++.| .+|+|++|++|.++
T Consensus 74 V~IG~~~~IG~ga~Igv~IG~~~vIGaGsvV~k~ 107 (147)
T cd04649 74 ISIGKRCLLGANSGIGISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred EEECCCCEECCCCEEeEEECCCCEECCCCEEeCC
Confidence 566666666666666 45556666655544
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-11 Score=116.12 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=77.3
Q ss_pred CcEEccCeEECCCCEECCCcEEC---CCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIG---PNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
.+.+++.+.| .++.|+++|.|+ .+++||++|+|+++|.|.+|+|+++|.|+++|+|.+|+|++++.|+.++.+.++
T Consensus 282 ~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~ 360 (380)
T PRK05293 282 PQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGG 360 (380)
T ss_pred CCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCC
Confidence 3445555555 245566666554 279999999999999999999999999999999999999999999999999886
Q ss_pred CCCCcceeeeEECCCCEECCCcEE
Q 015259 366 GDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 366 ~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
... .++||+++.|++++++
T Consensus 361 ~~~-----~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 361 KEV-----ITVIGENEVIGVGTVI 379 (380)
T ss_pred Cce-----eEEEeCCCCCCCCcEe
Confidence 443 2579999998888765
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-10 Score=101.97 Aligned_cols=56 Identities=34% Similarity=0.411 Sum_probs=30.5
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEee-eEECCCCEECCCCEE
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVV 345 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i 345 (410)
+.+.+++.|++++.|++++.|.+++.||++|.|++++.|.+ ++|+++|.|+++++|
T Consensus 14 ~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 14 AVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 33444444555555555555555555555555555555543 566666666666555
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-11 Score=117.76 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=27.9
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||+++++|.++.+ .+++|++|++|..++++..+
T Consensus 399 ~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~ 440 (456)
T PRK14356 399 TVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSL 440 (456)
T ss_pred CEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcE
Confidence 677777777777776 58888999999999888754
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-11 Score=107.82 Aligned_cols=93 Identities=24% Similarity=0.257 Sum_probs=65.9
Q ss_pred CeEECCCCEECCCcEECC--CcEECCCcEECCCCEEee-eEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcc
Q 015259 295 DVYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLIS-CIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAK 371 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~ 371 (410)
++-|++++.|++++.|.. +++||++|+||++|.|.+ +++|.. +..+..++++|+++|.||.++.|.++
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilgg------ 230 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILGN------ 230 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECCC------
Confidence 345556666666665553 677777777777777743 223321 34455678999999999999999877
Q ss_pred eeeeEECCCCEECCCcEEcceEEcCCcEE
Q 015259 372 LGITILGEAVGVEDEVVVTNSIVLPNKTL 400 (410)
Q Consensus 372 ~~~~~i~~~~~i~~~~~v~~~~v~~~~~v 400 (410)
++||+++.|++|++|.+. |.+++++
T Consensus 231 ---i~IGd~a~IGAgSVV~kd-VP~~~~v 255 (294)
T PLN02694 231 ---VKIGEGAKIGAGSVVLID-VPPRTTA 255 (294)
T ss_pred ---CEECCCCEECCCCEECCc-CCCCcEE
Confidence 999999999999999543 4555555
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=85.87 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=60.8
Q ss_pred CCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcc-eEE
Q 015259 317 SANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-SIV 394 (410)
Q Consensus 317 g~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~-~~v 394 (410)
+++++|++++.|+ +++|+++|.|+++++|.++++++++.|++++.|.+ +++++++.|++++.+.. +++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~----------sii~~~~~v~~~~~~~~~~~i 72 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKS----------SIVGWNSTVGRWTRLENVTVL 72 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeC----------CEEeCCCEECCCcEEecCEEE
Confidence 3444444444442 45668999999999999999999999999999998 89999999999999965 788
Q ss_pred cCCcEEc
Q 015259 395 LPNKTLN 401 (410)
Q Consensus 395 ~~~~~v~ 401 (410)
+.+..|+
T Consensus 73 g~~~~i~ 79 (80)
T cd05824 73 GDDVTIK 79 (80)
T ss_pred CCceEEC
Confidence 8887764
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=100.28 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=70.1
Q ss_pred CeEECCCCEECCCcEE----CCCcEECCCcEECCCCEEe---eeEECCCCEECCCCEEEe--------------------
Q 015259 295 DVYVHPSAKIHPTAKI----GPNVSISANARIGAGVRLI---SCIILDGVEIMENAVVTN-------------------- 347 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-------------------- 347 (410)
...+|+++.++.++.+ .+...||++|.|++++.|. ++.||++|.|++++.|.+
T Consensus 43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~ 122 (192)
T PRK09677 43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPD 122 (192)
T ss_pred eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChh
Confidence 3445666666666655 3467788888888888775 577888888888877752
Q ss_pred --------eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 348 --------AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 348 --------~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
++|+++|+||.++.|.++ ++||++|+|+++++|.++ +.+++++..
T Consensus 123 ~~~~~~~~v~Ig~~~~ig~~~~i~~g---------~~Ig~~~~Iga~s~v~~~-i~~~~~~~G 175 (192)
T PRK09677 123 MRTLESSAVVIGQRVWIGENVTILPG---------VSIGNGCIVGANSVVTKS-IPENTVIAG 175 (192)
T ss_pred hcccccCCeEEcCCcEECCCCEEcCC---------CEECCCCEECCCCEECcc-cCCCcEEEe
Confidence 467888888888887776 888888888888888654 566666644
|
|
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=101.54 Aligned_cols=106 Identities=16% Similarity=0.294 Sum_probs=76.7
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEee
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~ 84 (410)
+.+|||||| .|+||+. .||+|++++|+|||+|+++.+.. |+|++...... +.. ..++ +.++.
T Consensus 1 ~~~iILAgG--~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~~~~~ivv~~~~~~~~---~~~---~~~~--~~~i~ 66 (186)
T TIGR02665 1 ISGVILAGG--RARRMGG----RDKGLVELGGKPLIEHVLARLRPQVSDLAISANRNPER---YAQ---AGFG--LPVVP 66 (186)
T ss_pred CeEEEEcCC--ccccCCC----CCCceeEECCEEHHHHHHHHHHhhCCEEEEEcCCCHHH---Hhh---ccCC--CcEEe
Confidence 468999999 9999973 49999999999999999999876 66666544322 111 1122 23333
Q ss_pred C--CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHH
Q 015259 85 E--DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHR 131 (410)
Q Consensus 85 ~--~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~ 131 (410)
. ....|++++++.+.+.+. .+.++++.||.++ + ..+..+++.+.
T Consensus 67 ~~~~~~~g~~~si~~al~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 114 (186)
T TIGR02665 67 DALADFPGPLAGILAGLRWAG---TDWVLTVPCDTPFLPEDLVARLAAALE 114 (186)
T ss_pred cCCCCCCCCHHHHHHHHHhcC---CCeEEEEecCCCcCCHHHHHHHHHHhh
Confidence 2 345799999999988774 4689999999974 3 33677776654
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.1e-11 Score=106.34 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=67.2
Q ss_pred ccCeEECCCCEECCCcEEC--CCcEECCCcEECCCCEEeeeEECCCCEECC---CCEEEeeEECCCCEECCCcEEccCCC
Q 015259 293 IGDVYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLISCIILDGVEIME---NAVVTNAIVGWKSSIGRWSRVQAEGD 367 (410)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~i~~~~~i~~~~~ 367 (410)
...+.|++++.|++++.|. .+++||++|+||++|.| +.++++|. .+...+++|+++|.||.+|.|.++
T Consensus 139 ~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilgg-- 211 (273)
T PRK11132 139 AFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGN-- 211 (273)
T ss_pred eeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCC--
Confidence 3455566666666666665 24567777777777666 55555553 222346899999999999999998
Q ss_pred CCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 368 FNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 368 ~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+.||++++||+|++|.+. |.+++++..
T Consensus 212 -------v~IG~~a~IGAgSvV~~d-Vp~~~~v~G 238 (273)
T PRK11132 212 -------IEVGRGAKIGAGSVVLQP-VPPHTTAAG 238 (273)
T ss_pred -------CEECCCCEECCCCEECcc-cCCCcEEEe
Confidence 999999999999999553 566666643
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=103.91 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=6.7
Q ss_pred eEECCCCEECCCcEE
Q 015259 375 TILGEAVGVEDEVVV 389 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v 389 (410)
++||++|.||.++++
T Consensus 177 viIgDnv~IGa~s~I 191 (272)
T PRK11830 177 VIIEDNCFIGARSEV 191 (272)
T ss_pred eEEcCCCEECCCCEE
Confidence 444444444444443
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.5e-11 Score=102.57 Aligned_cols=90 Identities=24% Similarity=0.378 Sum_probs=65.7
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCC---c
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFN---A 370 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~---~ 370 (410)
.+.|+|.|.|.+++.|++++.||+.|.||+++.| ++++.++++++|. .+.||++++|-+++.|+..++.. .
T Consensus 3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~i-----g~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykg 77 (260)
T COG1043 3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEI-----GDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKG 77 (260)
T ss_pred ccccCcceeeCCCCCcCCCCEECceEEECCCcEE-----CCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCC
Confidence 4568888888888888888888888888888777 8888888888888 78899999988888888754411 1
Q ss_pred ceeeeEECCCCEECCCcEE
Q 015259 371 KLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 371 ~~~~~~i~~~~~i~~~~~v 389 (410)
.--..+||+++.|.+++++
T Consensus 78 e~T~l~IG~~n~IRE~vTi 96 (260)
T COG1043 78 EPTRLIIGDNNTIREFVTI 96 (260)
T ss_pred CceEEEECCCCeEeeEEEE
Confidence 1111455555555555555
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=90.66 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=62.9
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
++.+ .+++||+++.|+ ++.|. +++|+++|.|++++.|.+|+|++++.|+.++.+.+++|++++.|++++.+.+.
T Consensus 7 ~~~i-~~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 7 RGEV-KNSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred CCEE-EeEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 4555 357788888887 77786 88999999999999999999999999999999999999999999999888773
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-10 Score=99.88 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=57.2
Q ss_pred CCcEECCCcEECCCCEEe---eeEECCCCEECCCCEEE-------------------eeEECCCCEECCCcEEccCCCCC
Q 015259 312 PNVSISANARIGAGVRLI---SCIILDGVEIMENAVVT-------------------NAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 312 ~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
.++.||+++.|+.+|.|. +..||++|.|+++|.|. ..+|+++|+||.++.|.++
T Consensus 74 ~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~g---- 149 (203)
T PRK09527 74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG---- 149 (203)
T ss_pred CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCC----
Confidence 345555555555555552 35667777777776664 2689999999999998887
Q ss_pred cceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 370 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+.||++++|+++++|.+. |.+++++..
T Consensus 150 -----v~IG~~~vIgagsvV~kd-vp~~~v~~G 176 (203)
T PRK09527 150 -----VTIGDNSVIGAGSVVTKD-IPPNVVAAG 176 (203)
T ss_pred -----CEECCCCEECCCCEEccc-CCCCcEEEe
Confidence 899999999999999654 566666544
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-10 Score=89.66 Aligned_cols=98 Identities=21% Similarity=0.238 Sum_probs=76.4
Q ss_pred eEECCCCEECCCcEECC--CcEECCCcEECCCCEEeee---EECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCc
Q 015259 296 VYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLISC---IILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNA 370 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~---~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~ 370 (410)
+.|++++.|++++.|.+ ++.||++|.|+++|.|.++ .++.++.+........++|+++|.|+.++.+..+
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~----- 76 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPG----- 76 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCC-----
Confidence 56788888888888876 7889999999999998753 3444444444555668999999999999999776
Q ss_pred ceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 371 KLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 371 ~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
+.|++++.|++++.+.. .+.++.++...
T Consensus 77 ----~~ig~~~~i~~~~~v~~-~i~~~~i~~g~ 104 (109)
T cd04647 77 ----VTIGDGAVVGAGSVVTK-DVPPNSIVAGN 104 (109)
T ss_pred ----CEECCCCEECCCCEEee-ECCCCCEEEcc
Confidence 89999999999999974 56777776443
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-10 Score=113.38 Aligned_cols=115 Identities=19% Similarity=0.275 Sum_probs=89.9
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEcc----
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA---- 364 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---- 364 (410)
..+.+.+.|++++.|++++.|++++.||++|+|++++.|.+++||++|.|+++++|. +++|+++|.||+++.+.+
T Consensus 263 ~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~ 342 (446)
T PRK14353 263 VFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLG 342 (446)
T ss_pred EEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEEC
Confidence 456677888899999999999999999999999999999999999999999999998 899999999999987743
Q ss_pred -CCC--CCcceeeeEECCCCEECC-------------CcEE-cceEEcCCcEEcccC
Q 015259 365 -EGD--FNAKLGITILGEAVGVED-------------EVVV-TNSIVLPNKTLNVSV 404 (410)
Q Consensus 365 -~~~--~~~~~~~~~i~~~~~i~~-------------~~~v-~~~~v~~~~~v~~~~ 404 (410)
+.. +....+.++||++|.||+ +++| .+++|+++++|.+++
T Consensus 343 ~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~ 399 (446)
T PRK14353 343 EGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPV 399 (446)
T ss_pred CCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCC
Confidence 110 112233467777777776 3666 577777777776643
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=99.17 E-value=4e-10 Score=87.84 Aligned_cols=91 Identities=26% Similarity=0.402 Sum_probs=67.3
Q ss_pred eEECCCCEECCCcEECC--CcEECCCcEECCCCEEeeeEECCCCEECCCCE---EEeeEECCCCEECCCcEEccCCCCCc
Q 015259 296 VYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLISCIILDGVEIMENAV---VTNAIVGWKSSIGRWSRVQAEGDFNA 370 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~~~~~~~ 370 (410)
+.|++++.|++++.|.. +++|++++.||+++.| ++++.|++++. +..++|++++.|+.++.+..+
T Consensus 3 ~~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~----- 72 (101)
T cd03354 3 IDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGN----- 72 (101)
T ss_pred eEeCCCCEECCCEEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECc-----
Confidence 34555555555555553 4567777777777665 67777777775 568899999999999999887
Q ss_pred ceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 371 KLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 371 ~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+.|+++++|++++.+.+. +.++.++.
T Consensus 73 ----~~Ig~~~~i~~~~~i~~~-~~~~~~~~ 98 (101)
T cd03354 73 ----ITIGDNVKIGANAVVTKD-VPANSTVV 98 (101)
T ss_pred ----CEECCCCEECCCCEECcc-cCCCCEEE
Confidence 899999999999999654 56666554
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-10 Score=94.91 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=51.1
Q ss_pred CcEECCCcEECCCCEEee----eEECCCCEECCCCEEEe-------------eEECCCCEECCCcEEccCCCCCcce-ee
Q 015259 313 NVSISANARIGAGVRLIS----CIILDGVEIMENAVVTN-------------AIVGWKSSIGRWSRVQAEGDFNAKL-GI 374 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~~~~~~~~~-~~ 374 (410)
+..||+++.|++++.|.. +.||++|.|+++|+|.. ++|++++.|++++.+... .. ..
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~-----~Ig~~ 95 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAA-----QIGSY 95 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEee-----EEcCC
Confidence 555666666666666653 57888888888888863 467888888887776551 00 00
Q ss_pred eEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 375 TILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
+.|+++++|++++.+ .++.|+++++|..+
T Consensus 96 v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 96 VHIGKNCVIGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred cEECCCCEEcCCCEECCCcEECCCCEECCC
Confidence 344444444444444 35555566666554
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=92.25 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=71.0
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeE
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITI 376 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~ 376 (410)
|++++.|++++.|++++.||++|+|++++.|. +++|+++|.|++++.+.++.+... .+..++.+.+ ++
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~-~~~~~~~~~~----------~~ 69 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS-KIYRKWELKG----------TT 69 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc-ccccccccCC----------cE
Confidence 46677777777888888888888888888885 788899999999988887644443 3333444444 55
Q ss_pred ECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 377 LGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 377 i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
||++++|++++.+ .++.|++++++..++++..+
T Consensus 70 Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~~~i~~~~~ 109 (119)
T cd03358 70 VKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYAL 109 (119)
T ss_pred ECCCcEECcCCEEeCCcEECCCCEEccCCEEeCcCCCCeE
Confidence 5555555555555 46677777778778877643
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.9e-10 Score=95.02 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=39.3
Q ss_pred eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 347 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 347 ~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
.++|+++|+||.++.|.++ +.||++|+||+++++.+. |.+++++..+
T Consensus 118 ~v~IG~~~~Ig~~a~I~~g---------v~Ig~~~~VgagavV~~~-vp~~~vv~G~ 164 (169)
T cd03357 118 PITIGDNVWIGGGVIILPG---------VTIGDNSVIGAGSVVTKD-IPANVVAAGN 164 (169)
T ss_pred CcEeCCCEEECCCCEEeCC---------CEECCCCEECCCCEEccc-cCCCcEEEcc
Confidence 5789999999999998887 899999999999999764 7777776554
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=95.64 Aligned_cols=126 Identities=19% Similarity=0.265 Sum_probs=87.1
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEeccc-chHHHHHHHHhhcccCCcc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFY-EEREFALYVSSISNELRIP 79 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~-~~~~i~~~~~~~~~~~~~~ 79 (410)
..+.+|||||| .|+||+. ..||.+++++|+||++|+|+.|.. |+|+++. ....+..+.+ ...+.+
T Consensus 3 ~~~~~vilAaG--~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~~ 74 (230)
T COG1211 3 MMVSAVILAAG--FGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADKR 74 (230)
T ss_pred ceEEEEEEcCc--cccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCCe
Confidence 36899999999 9999998 999999999999999999999987 6777665 3333444432 122335
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEec
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~ 144 (410)
+.++. .+..-.+|++.+++.+....++.|||..+==++ ...+.++++... +..+.+...+.
T Consensus 75 v~~v~--GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~--~~~aai~alpv 137 (230)
T COG1211 75 VEVVK--GGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELAD--KYGAAILALPV 137 (230)
T ss_pred EEEec--CCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhc--cCCcEEEEeec
Confidence 66654 555678999999999974334556666664443 344778874332 33444555554
|
|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.1e-09 Score=92.32 Aligned_cols=206 Identities=19% Similarity=0.229 Sum_probs=117.0
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCCccEE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPVR 81 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~i~ 81 (410)
+.|||+||| .|+||+. ..||.+++++|+|+|.|+|+.|.+ |+|++.... +.+++.+.. ..+.
T Consensus 1 V~aIilAaG--~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~------~~v~ 69 (221)
T PF01128_consen 1 VAAIILAAG--SGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK------KKVK 69 (221)
T ss_dssp EEEEEEESS---STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH------TTEE
T ss_pred CEEEEeCCc--cchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC------CCEE
Confidence 468999999 9999986 789999999999999999999987 666665443 445554443 3456
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcC
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~ 159 (410)
++. .+..-.+|++++++.+.... +.++|..|=-++ ...+.++++..++. ..+++...+. .+ .+...+
T Consensus 70 iv~--GG~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~--~D----Tik~v~- 138 (221)
T PF01128_consen 70 IVE--GGATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPV--TD----TIKRVD- 138 (221)
T ss_dssp EEE----SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE---SS----EEEEES-
T ss_pred Eec--CChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEec--cc----cEEEEe-
Confidence 654 45567899999999987332 456666664443 34478888876542 3444454444 11 122344
Q ss_pred CCCcEEEEecCCCCccccceeee-EEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeecc--chh
Q 015259 160 DTNELLHYTEKPETFVSDLINCG-VYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQ--DIL 235 (410)
Q Consensus 160 ~~~~v~~i~ekp~~~~~~l~~~G-iy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--d~l 235 (410)
+++.+...... +.+..+. =-.|+.+.+ +.++...... ..+-+ .++
T Consensus 139 ~~~~v~~tldR-----~~l~~~QTPQ~F~~~~l~~a~~~a~~~~--------------------------~~~tDdasl~ 187 (221)
T PF01128_consen 139 DDGFVTETLDR-----SKLWAVQTPQAFRFELLLEAYEKADEEG--------------------------FEFTDDASLV 187 (221)
T ss_dssp TTSBEEEEETG-----GGEEEEEEEEEEEHHHHHHHHHTHHHHT--------------------------HHHSSHHHHH
T ss_pred cCCcccccCCH-----HHeeeecCCCeecHHHHHHHHHHHHhcC--------------------------CCccCHHHHH
Confidence 45666665443 3333322 124555553 3333221000 01101 123
Q ss_pred ccccCCCceeEEeccceeeecCCccchhhhhHHH
Q 015259 236 SPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 236 ~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~ 269 (410)
..+ +.+++..+-+..-+-|.+|+|+..|...+
T Consensus 188 ~~~--g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 188 EAA--GKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HHT--TS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred HHc--CCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 222 45777777655667789999998877654
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.9e-10 Score=94.10 Aligned_cols=93 Identities=28% Similarity=0.328 Sum_probs=59.4
Q ss_pred CeEECCCCEECCCcEECC--CcEECCCcEECCCCEEeeeEECCCCEECCC---CEEEeeEECCCCEECCCcEEccCCCCC
Q 015259 295 DVYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLISCIILDGVEIMEN---AVVTNAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~---~~i~~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
++.|++++.|++++.|.. +++|+++|+||++|.| +++++++.. .....++|+++|.|+.++.|.++
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I-----~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~---- 131 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGN---- 131 (162)
T ss_pred CeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccccCCcCCEECCCcEEcCCCEEECC----
Confidence 344444444444444432 2455555555555444 333333321 11335799999999999999988
Q ss_pred cceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 370 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
++||+++.|+++++|.+. |.+++++..
T Consensus 132 -----v~IG~~~~Iga~s~V~~d-vp~~~~~~G 158 (162)
T TIGR01172 132 -----IEVGENAKIGANSVVLKD-VPPGATVVG 158 (162)
T ss_pred -----cEECCCCEECCCCEECCC-CCCCCEEEe
Confidence 999999999999999654 677777643
|
Cysteine biosynthesis |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=94.34 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=35.1
Q ss_pred eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 347 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 347 ~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
.++|+++|+||.++.|.++ +.||++++|+++++|.+. |.+++++..
T Consensus 129 ~v~IGd~v~IG~~a~I~~g---------v~IG~~~vIgagsvV~~d-i~~~~i~~G 174 (183)
T PRK10092 129 PVTIGNNVWIGGRAVINPG---------VTIGDNVVVASGAVVTKD-VPDNVVVGG 174 (183)
T ss_pred CeEECCCcEECCCCEECCC---------CEECCCCEECCCCEEccc-cCCCcEEEe
Confidence 4678888888888888777 888888888888888554 566666644
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-10 Score=85.37 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=64.4
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEcc
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (410)
++.+.++++|++++.|++++.|.+++.||++|+|+. .|.+|+|++++.++++++|.+++|++++.||+++.+.+
T Consensus 23 ~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 23 FAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSD 96 (101)
T ss_pred CCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceecc
Confidence 566777888888888888888888888888888864 57899999999999999999999999999999988765
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.1e-10 Score=95.60 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=61.8
Q ss_pred EECCCcEECCCCEEe---eeEECCCCEECCCCEEE---eeEECCCCEECCCcEEccCCCC------CcceeeeEECCCCE
Q 015259 315 SISANARIGAGVRLI---SCIILDGVEIMENAVVT---NAIVGWKSSIGRWSRVQAEGDF------NAKLGITILGEAVG 382 (410)
Q Consensus 315 ~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~~~------~~~~~~~~i~~~~~ 382 (410)
.||+++.|.+++.|. +..||++|.|++++.|. .++|+++|.|++++.|..+... +...+..+||++|+
T Consensus 53 ~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~ 132 (182)
T PRK10502 53 KIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCW 132 (182)
T ss_pred ccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcE
Confidence 334444444444443 46678888888888886 5788888888888888654321 11223467777777
Q ss_pred ECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 383 VEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 383 i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
||+++++ ++++|+++++|.+++++..+
T Consensus 133 Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v 166 (182)
T PRK10502 133 LAADVFVAPGVTIGSGAVVGARSSVFKSLPANTI 166 (182)
T ss_pred EcCCCEEcCCCEECCCCEECCCCEEecccCCCcE
Confidence 7777766 56677777777777777643
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.4e-10 Score=91.13 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=56.6
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEE--EeeEECCCCEECCCcEEccCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV--TNAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i--~~~~i~~~~~i~~~~~i~~~~ 366 (410)
+.++.+.+.+++++.|+++ .+++|+++++||+++.| +++|+||+.... ..+.|+++|.||.++.+.++
T Consensus 41 g~~I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I-----~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~- 110 (146)
T PRK10191 41 GYEIQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTI-----RHGVTIGNRGADNMACPHIGNGVELGANVIILGD- 110 (146)
T ss_pred CcccCCCCEECCCeEECCC----CeEEECCCcEECCCCEE-----CCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCC-
Confidence 3445555666666666653 13444444444444433 333333332222 23588999999999998887
Q ss_pred CCCcceeeeEECCCCEECCCcEEcceEEcCCcEE
Q 015259 367 DFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 400 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v 400 (410)
+.||++++|++++++.+.+ .++.++
T Consensus 111 --------v~IG~~~~Igags~V~~dv-~~~~~v 135 (146)
T PRK10191 111 --------ITIGNNVTVGAGSVVLDSV-PDNALV 135 (146)
T ss_pred --------CEECCCCEECCCCEECCcc-CCCcEE
Confidence 8999999999999996654 344443
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=98.29 Aligned_cols=91 Identities=18% Similarity=0.186 Sum_probs=58.6
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcE-ECCCCE---Ee-eeEECCCCEECCCCEEE-----e----eEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANAR-IGAGVR---LI-SCIILDGVEIMENAVVT-----N----AIVGWK 353 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~-i~~~~~---i~-~~~i~~~~~i~~~~~i~-----~----~~i~~~ 353 (410)
.+..|.+.++|.+++.|++|++|.++++|+.++. +|.++. |. +++|+++|.||.+|+|. + +.|+++
T Consensus 177 ~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IGe~ 256 (341)
T TIGR03536 177 KGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEG 256 (341)
T ss_pred CCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEECCC
Confidence 4556666666666666666666666666666666 555544 43 57778888888888774 2 455555
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
|.||.++.| + ..||++|+|++|+.|
T Consensus 257 ~lIGagA~I-G----------I~IGd~~iIGAGavV 281 (341)
T TIGR03536 257 CLLGANAGI-G----------IPLGDRCTVEAGLYI 281 (341)
T ss_pred cEECCCCEE-e----------eEECCCCEECCCCEE
Confidence 555555555 2 677777777777766
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.7e-10 Score=102.43 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=54.0
Q ss_pred eEECCCCEECCCcEECC--CcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcce
Q 015259 296 VYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKL 372 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~ 372 (410)
+.|++++.|+.|+.|.. +++||++++||++|.|. +++||.. +......+++|+++|.||.++.|.++
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~Ilgg------- 296 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILGN------- 296 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEECC-------
Confidence 45555555555555553 45666666666666663 2222221 11112346889999999999988776
Q ss_pred eeeEECCCCEECCCcEEc
Q 015259 373 GITILGEAVGVEDEVVVT 390 (410)
Q Consensus 373 ~~~~i~~~~~i~~~~~v~ 390 (410)
++||+++.||+|++|.
T Consensus 297 --V~IGdga~IGAgSVV~ 312 (360)
T PLN02357 297 --ITIGEGAKIGAGSVVL 312 (360)
T ss_pred --eEECCCCEECCCCEEC
Confidence 8999999999999984
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.6e-10 Score=97.26 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=75.8
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEee-eEECCCCEECCCCEEE---------eeEECCCCEECC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVVT---------NAIVGWKSSIGR 358 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~i~~~~~i~~ 358 (410)
++.++..++|++++++.++++|.=++.++++++|+-+++++. ..||+||+||.++.|. .++|++||.||+
T Consensus 114 ~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGA 193 (271)
T COG2171 114 GAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGA 193 (271)
T ss_pred ccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEecc
Confidence 566777788888888888888887888999999988888875 4599999999998885 378899999999
Q ss_pred CcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 359 WSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 359 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
++.+..+ +.+|++|+|++|+.|
T Consensus 194 ns~~veG---------V~vGdg~VV~aGv~I 215 (271)
T COG2171 194 NSEVVEG---------VIVGDGCVVAAGVFI 215 (271)
T ss_pred ccceEee---------eEeCCCcEEecceEE
Confidence 8855555 888888888888888
|
|
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=102.61 Aligned_cols=102 Identities=14% Similarity=0.302 Sum_probs=72.2
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
.+.+|||||| +|+||+. +|+|++++|+|||+|+++.+.. ++|+..... ...+ . .++ +.++
T Consensus 174 ~i~~iILAGG--~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~~~~vvV~~~~~~--~~~~-~----~~~--v~~i 237 (369)
T PRK14490 174 PLSGLVLAGG--RSSRMGS-----DKALLSYHESNQLVHTAALLRPHCQEVFISCRAEQ--AEQY-R----SFG--IPLI 237 (369)
T ss_pred CceEEEEcCC--ccccCCC-----CcEEEEECCccHHHHHHHHHHhhCCEEEEEeCCch--hhHH-h----hcC--CcEE
Confidence 4789999999 9999975 9999999999999999999976 655554332 1111 1 122 3333
Q ss_pred eC-CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CC-ChHHHHH
Q 015259 84 RE-DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SF-PLPEMLD 128 (410)
Q Consensus 84 ~~-~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~-~l~~~l~ 128 (410)
.. ....|...++..+.+... .+.++++.||+++ .. .+..+++
T Consensus 238 ~d~~~~~Gpl~gi~~al~~~~---~~~~lv~~~DmP~i~~~~i~~L~~ 282 (369)
T PRK14490 238 TDSYLDIGPLGGLLSAQRHHP---DAAWLVVACDLPFLDEATLQQLVE 282 (369)
T ss_pred eCCCCCCCcHHHHHHHHHhCC---CCcEEEEeCCcCCCCHHHHHHHHH
Confidence 32 335688888888776654 3679999999996 33 2555554
|
|
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-09 Score=101.40 Aligned_cols=104 Identities=15% Similarity=0.262 Sum_probs=74.8
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
.+.+|||||| +|+||+. +|+|+++.|+||++|+++.+.. ++|+.+... .... .+ ..+.++
T Consensus 160 ~i~~IILAGG--kSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~~~~ViVv~~~~~--~~~~------~~-~~v~~I 223 (346)
T PRK14500 160 PLYGLVLTGG--KSRRMGK-----DKALLNYQGQPHAQYLYDLLAKYCEQVFLSARPSQ--WQGT------PL-ENLPTL 223 (346)
T ss_pred CceEEEEecc--ccccCCC-----CcccceeCCccHHHHHHHHHHhhCCEEEEEeCchH--hhhc------cc-cCCeEE
Confidence 5789999999 9999976 9999999999999999999887 666654321 1110 01 023333
Q ss_pred -eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CC-ChHHHHHHH
Q 015259 84 -REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SF-PLPEMLDAH 130 (410)
Q Consensus 84 -~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~-~l~~~l~~~ 130 (410)
......|...+|+.+.+... .+.++++.||+++ .. .+..+++.+
T Consensus 224 ~D~~~~~GPlagI~aaL~~~~---~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 224 PDRGESVGPISGILTALQSYP---GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred eCCCCCCChHHHHHHHHHhCC---CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 23445799999999988764 3578999999995 33 366666654
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=80.27 Aligned_cols=76 Identities=25% Similarity=0.348 Sum_probs=47.3
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeE
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITI 376 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~ 376 (410)
+|++++.|++++.|.+++.||++|.|++++.|.+..... .....+|++++.++.++.+..+ +.
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i~~~---------~~ 64 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVIHGG---------VK 64 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEEeCC---------CE
Confidence 466666666666666567777777777766665443221 1224566677777776766665 67
Q ss_pred ECCCCEECCCcEE
Q 015259 377 LGEAVGVEDEVVV 389 (410)
Q Consensus 377 i~~~~~i~~~~~v 389 (410)
|++++.|++++.+
T Consensus 65 ig~~~~i~~~s~v 77 (78)
T cd00208 65 IGDNAVIGAGAVV 77 (78)
T ss_pred ECCCCEECcCcEe
Confidence 7777777666654
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.5e-10 Score=97.00 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=79.0
Q ss_pred CEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCCcceeeeEECC
Q 015259 302 AKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGE 379 (410)
Q Consensus 302 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~ 379 (410)
+.|.|+++++.+++|++|+++-+.+.|. ++.++.++.|.-.+.+. ..+||+||.||.++.|.+--+.+... .++|++
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~-Pv~Igd 187 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQAN-PVIIGD 187 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCC-CeEECC
Confidence 5666666666677888888888878886 78888888888777777 56899999999999888743333322 278888
Q ss_pred CCEECCCcEE-------cceEEcCCcEEcccCCCc
Q 015259 380 AVGVEDEVVV-------TNSIVLPNKTLNVSVHQE 407 (410)
Q Consensus 380 ~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~ 407 (410)
||.||+++++ .+|+|.+|..|+.+++..
T Consensus 188 ncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~ 222 (271)
T COG2171 188 NCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIY 222 (271)
T ss_pred ccEeccccceEeeeEeCCCcEEecceEEeCCcceE
Confidence 8888888644 688888888888887653
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=104.87 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=78.5
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+++.+|||||| .|+||+ ..||+|++++|+|||+|+++.+.. ++|+.....+.+.+++. +..+..
T Consensus 4 ~~i~~VILAgG--~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~~~~~iivvv~~~~~~~~~~~~------~~~~i~ 71 (366)
T PRK14489 4 SQIAGVILAGG--LSRRMN----GRDKALILLGGKPLIERVVDRLRPQFARIHLNINRDPARYQDLFP------GLPVYP 71 (366)
T ss_pred CCceEEEEcCC--cccCCC----CCCCceeEECCeeHHHHHHHHHHhhCCEEEEEcCCCHHHHHhhcc------CCcEEe
Confidence 46899999999 999995 248999999999999999999876 66644443333333211 112211
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHHhcCCc
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHRNYGGM 136 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~~~~~~ 136 (410)
.......|..++++.+.+.+. .+.+++++||.++ . ..+..+++.+...+++
T Consensus 72 d~~~g~~G~~~si~~gl~~~~---~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 72 DILPGFQGPLSGILAGLEHAD---SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred cCCCCCCChHHHHHHHHHhcC---CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 111223688899999988774 3679999999874 3 3367777765443333
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=101.00 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=57.6
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCE---EEeeEECCCCEECCCcEEccC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAV---VTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~~ 365 (410)
+..|++.+.||+++.|+.+ .+++||++|+||++|.| ..+++||.... -.+.+||++|.||.++.|.++
T Consensus 205 GidI~p~A~IG~Gv~IdHg----~GVVIG~~avIGdnv~I-----~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~ 275 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHG----TGVVIGETAVIGDRVSI-----LHGVTLGGTGKETGDRHPKIGDGALLGACVTILGN 275 (355)
T ss_pred CcccCCCccccCceEEecC----CceEECCCCEECCCCEE-----cCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCC
Confidence 3445555555555555421 24555555555555554 33333332110 125789999999999999887
Q ss_pred CCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 366 GDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 366 ~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+.||+++.||+|++|... |.+++++.
T Consensus 276 ---------V~IGd~aiIGAGSVV~kD-VP~~stvv 301 (355)
T PLN02739 276 ---------ISIGAGAMVAAGSLVLKD-VPSHSMVA 301 (355)
T ss_pred ---------eEECCCCEECCCCEECCC-CCCCcEEE
Confidence 999999999999999543 55555554
|
|
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=101.09 Aligned_cols=68 Identities=26% Similarity=0.343 Sum_probs=59.4
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccC
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
++.++.+|.|.. .+. +|+|+.+++|+++|.|.+|+|+++|.||++|+|+++||.++|.|++|+.|++.
T Consensus 296 nSLv~~GciI~G--~V~-nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 296 NSLVAGGCIISG--TVE-NSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eeeeeCCeEEEe--EEE-eeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 445555555542 444 89999999999999999999999999999999999999999999999999987
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=106.06 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=72.7
Q ss_pred ccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECC-------------------C
Q 015259 293 IGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGW-------------------K 353 (410)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~-------------------~ 353 (410)
...+.+.+.+.+. ++.|. ++.||++|+| +++.|.+|+||++|.|+++|+|.+|+|++ +
T Consensus 290 ~~~~~~~~~a~~~-~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~ 366 (429)
T PRK02862 290 YTRARYLPPSKLL-DATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPP 366 (429)
T ss_pred eccCCCCCCcccc-ccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcc
Confidence 3334455555553 66776 6999999999 89999999999999999999999999986 6
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
+.||++|.|.. ++|+++|.||+++.+
T Consensus 367 ~~Ig~~~~i~~----------~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 367 LGIGEGTTIKR----------AIIDKNARIGNNVRI 392 (429)
T ss_pred cEECCCCEEEE----------EEECCCcEECCCcEE
Confidence 99999999988 899999999999999
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-09 Score=95.39 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=58.8
Q ss_pred CcEEccCeEECCCCEECCCcEECCCc-EECCCcEECCCCEEe-eeEECCCCEECCCCEEEe---------eEECCCCEEC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNV-SISANARIGAGVRLI-SCIILDGVEIMENAVVTN---------AIVGWKSSIG 357 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~-~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~i~ 357 (410)
...+.-++++++++.|.++++|..++ .||++ .| +++|. +|+||++|.|+.++.|.. +.|+++|.||
T Consensus 159 ~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IG 235 (319)
T TIGR03535 159 ADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLG 235 (319)
T ss_pred CceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEEC
Confidence 34444556666666666666666555 46654 44 35554 567777777777777432 6788888888
Q ss_pred CCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 358 RWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 358 ~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.+|.| + ..||++|+||+|++|
T Consensus 236 agA~I-G----------I~IGd~~VVGAGaVV 256 (319)
T TIGR03535 236 ANSGL-G----------ISLGDDCVVEAGLYV 256 (319)
T ss_pred CCCEE-C----------eEECCCCEECCCCEE
Confidence 88887 3 788888888888888
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-09 Score=87.88 Aligned_cols=77 Identities=23% Similarity=0.252 Sum_probs=58.5
Q ss_pred CCcEEccCeEECC--CCEECCCcEECCCcEECCCcEECCCCEE--eeeEECCCCEECCCCEEE-eeEECCCCEECCCcEE
Q 015259 288 KNATIIGDVYVHP--SAKIHPTAKIGPNVSISANARIGAGVRL--ISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRV 362 (410)
Q Consensus 288 ~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~i--~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 362 (410)
.++.+.+++.|++ ++.|+++++|+.++.|+.+|+||+.... ..+.||++|.|+.++.+. ++.|++++.|++++.+
T Consensus 46 ~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V 125 (146)
T PRK10191 46 AAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVV 125 (146)
T ss_pred CCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCEE
Confidence 3567788888877 5777777777777777777777765443 245788888888888887 6888888888888888
Q ss_pred cc
Q 015259 363 QA 364 (410)
Q Consensus 363 ~~ 364 (410)
.+
T Consensus 126 ~~ 127 (146)
T PRK10191 126 LD 127 (146)
T ss_pred CC
Confidence 76
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=106.11 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=46.2
Q ss_pred EECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEc-----------cCC-----
Q 015259 303 KIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ-----------AEG----- 366 (410)
Q Consensus 303 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----------~~~----- 366 (410)
.+.+++.|.+.+.||++|.|+++|.|.+|+|+++|.|+. +++.+|+|++++.|++++.|. +..
T Consensus 255 ~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~ 333 (430)
T PRK14359 255 YIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVK 333 (430)
T ss_pred EECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEecccc
Confidence 344444555555566666666666666666666666643 455555555555555555443 210
Q ss_pred -CCCcceeeeEECCCCEECCCcEE
Q 015259 367 -DFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 367 -~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.+...++.|+||++|.||+++++
T Consensus 334 i~~~~~i~d~~Ig~~~~ig~~~~~ 357 (430)
T PRK14359 334 AGHLSYLGDCEIDEGTNIGAGTIT 357 (430)
T ss_pred ccccccccCCEECCCCEECCCceE
Confidence 02233444667777777776544
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=97.21 Aligned_cols=76 Identities=25% Similarity=0.173 Sum_probs=49.6
Q ss_pred CCcEEccCeEECCCCEECC--CcEECCCcEECCCcEECCCCEEee---------eEECCCCEECCCCEEE-eeEECCCCE
Q 015259 288 KNATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSS 355 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~ 355 (410)
.+..|++.+.||+++.|+. +.+|++++.||++|.|..+++|++ .+||++|.||.+|.|. +++||+++.
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~ 219 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAK 219 (273)
T ss_pred eeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCE
Confidence 3667777777777777763 567777777888888877777763 4566666666666554 445555555
Q ss_pred ECCCcEEc
Q 015259 356 IGRWSRVQ 363 (410)
Q Consensus 356 i~~~~~i~ 363 (410)
||+++.+.
T Consensus 220 IGAgSvV~ 227 (273)
T PRK11132 220 IGAGSVVL 227 (273)
T ss_pred ECCCCEEC
Confidence 55555443
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-09 Score=95.80 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=55.1
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCE-Eee-eE---ECCCCEECCCCEEEeeEECCCCEECCCcEEcc
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVR-LIS-CI---ILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~-i~~-~~---i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (410)
.-+..+++|++++.|..++.|+++++|.+++.|+.++. +++ ++ |..++.||++| .|+++|.| ++.+.+
T Consensus 173 yVvp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds-----~IG~gasI--g~tLsG 245 (341)
T TIGR03536 173 YVVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGS-----DLGGGCST--MGTLSG 245 (341)
T ss_pred eEccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCC-----EECCCCEE--eEEEeC
Confidence 34455566666666665555555555555555555554 332 22 23333333333 33333333 222222
Q ss_pred CCCCCcceeeeEECCCCEECCCcEE-----cceEEcCCcEEcccCC
Q 015259 365 EGDFNAKLGITILGEAVGVEDEVVV-----TNSIVLPNKTLNVSVH 405 (410)
Q Consensus 365 ~~~~~~~~~~~~i~~~~~i~~~~~v-----~~~~v~~~~~v~~~~~ 405 (410)
+...+ +.||++|.||.|+.+ .+|+|++|++|..+.+
T Consensus 246 g~~~~-----V~IGe~~lIGagA~IGI~IGd~~iIGAGavVtagTk 286 (341)
T TIGR03536 246 GGNIV-----ISVGEGCLLGANAGIGIPLGDRCTVEAGLYITAGTK 286 (341)
T ss_pred CCcee-----EEECCCcEECCCCEEeeEECCCCEECCCCEEeCCcE
Confidence 10011 678888888888877 5788888888877654
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.6e-09 Score=88.55 Aligned_cols=76 Identities=28% Similarity=0.212 Sum_probs=50.8
Q ss_pred CcEEccCeEECCCCEECC--CcEECCCcEECCCcEECCCCEEee---------eEECCCCEECCCCEEE-eeEECCCCEE
Q 015259 289 NATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSSI 356 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (410)
+..+.+.+.|++++.|+. ++.|++++.||++|+|+++++|+. ++|+++|.|+.++.|. +++|++++.|
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~I 140 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKI 140 (162)
T ss_pred CeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEE
Confidence 456666677777777754 366776777777777777777763 3667777777777666 4666666666
Q ss_pred CCCcEEcc
Q 015259 357 GRWSRVQA 364 (410)
Q Consensus 357 ~~~~~i~~ 364 (410)
++++.|..
T Consensus 141 ga~s~V~~ 148 (162)
T TIGR01172 141 GANSVVLK 148 (162)
T ss_pred CCCCEECC
Confidence 66665554
|
Cysteine biosynthesis |
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-09 Score=89.93 Aligned_cols=112 Identities=20% Similarity=0.289 Sum_probs=83.3
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccc-hHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYE-EREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~-~~~i~~~~~~~~~~~~~~i~ 81 (410)
.+.+|||||| +|+||+. +|-|+|+.|+|++.++++...+ ++|+..+. .+....... ...++
T Consensus 5 ~v~~VvLAAG--rssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~------~~~~~ 71 (199)
T COG2068 5 TVAAVVLAAG--RSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA------QLGVT 71 (199)
T ss_pred ceEEEEEccc--ccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc------cCCeE
Confidence 6899999999 9999996 9999999999999999997765 66665543 222222221 23455
Q ss_pred Eee-CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhc
Q 015259 82 YLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY 133 (410)
Q Consensus 82 ~i~-~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~ 133 (410)
++. ++...|.+.|+..+........ +.++++.||++. ..++..+++.+..+
T Consensus 72 ~v~npd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 72 VVVNPDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred EEeCcchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 443 3556789999999999886332 478999999984 45688888877655
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.9e-09 Score=80.79 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=64.7
Q ss_pred eEECCCCEECCCcEEC--CCcEECCCcEECCCCEEeeeEECCCCEECCCCEE-EeeEECCCCEECCCcEEccCCCCCcce
Q 015259 296 VYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLISCIILDGVEIMENAVV-TNAIVGWKSSIGRWSRVQAEGDFNAKL 372 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~~~~~~~~~~ 372 (410)
..||+++.|++++.|. +.+.||++|.|++++.|... ...........+ ...+|+++|+|+.++.|..+
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~--~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g------- 74 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTG--SHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPG------- 74 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecC--CCCCCcCccceecCCEEECCCCEECCCCEECCC-------
Confidence 4556666666666664 46778888888888777421 111111112222 36789999999999999887
Q ss_pred eeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 373 GITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 373 ~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+.||+++.|++++.+.+. +.+++++..
T Consensus 75 --~~Ig~~~~i~~gs~v~~~-~~~~~~~~G 101 (107)
T cd05825 75 --VTIGEGAVVGARSVVVRD-LPAWTVYAG 101 (107)
T ss_pred --CEECCCCEECCCCEEeCc-CCCCCEEEC
Confidence 999999999999999764 567666643
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.9e-09 Score=90.24 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=60.4
Q ss_pred eeEECCCCEECCCCEEE---eeEECCCCEECCCcEEccCCC------------------CCcceeeeEECCCCEECCCcE
Q 015259 330 SCIILDGVEIMENAVVT---NAIVGWKSSIGRWSRVQAEGD------------------FNAKLGITILGEAVGVEDEVV 388 (410)
Q Consensus 330 ~~~i~~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~~------------------~~~~~~~~~i~~~~~i~~~~~ 388 (410)
...||++|.|++++.|. .++||++|.|++++.|.+... .....+.++||++++|++++.
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~ 144 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVT 144 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCE
Confidence 46789999999999987 689999999999999976321 011224467777777777776
Q ss_pred E-------cceEEcCCcEEcccCCCccc
Q 015259 389 V-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 389 v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+ .+|+|+++++|..++++..+
T Consensus 145 i~~g~~Ig~~~~Iga~s~v~~~i~~~~~ 172 (192)
T PRK09677 145 ILPGVSIGNGCIVGANSVVTKSIPENTV 172 (192)
T ss_pred EcCCCEECCCCEECCCCEECcccCCCcE
Confidence 6 67888888888888887654
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.4e-09 Score=90.84 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=34.1
Q ss_pred eEECCCCEECCCcEEccCCCCCc----------ceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 348 AIVGWKSSIGRWSRVQAEGDFNA----------KLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 348 ~~i~~~~~i~~~~~i~~~~~~~~----------~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
..||++|.|++++.|.... |+. ....++||++|+||.+++| .+++|++|++|..++++..+
T Consensus 96 I~IGd~v~Ig~~v~I~~~~-h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v 173 (203)
T PRK09527 96 VTIGDNVLIAPNVTLSVTG-HPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVV 173 (203)
T ss_pred EEECCCCEECCCCEEEeCC-CCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcE
Confidence 4566666666666665321 110 0112556666666555555 56677777777777776543
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-09 Score=102.78 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=66.3
Q ss_pred ECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 310 IGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 310 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
+.+++.||++|.|+ ++.|.+|+||++|.|+++|+|.+|+|+++|.|+++|.|.+ |+|++++.|++++++
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~----------~ii~~~~~i~~~~~i 380 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR----------AILDKNVVVPPGATI 380 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe----------eEECCCCEECCCCEE
Confidence 34579999999998 9999999999999999999999999999999999999998 999999999999998
Q ss_pred cc
Q 015259 390 TN 391 (410)
Q Consensus 390 ~~ 391 (410)
.+
T Consensus 381 ~~ 382 (407)
T PRK00844 381 GV 382 (407)
T ss_pred CC
Confidence 54
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-09 Score=90.36 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=56.4
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECC---CCEEEeeEECCCCEECCCcEEccC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIME---NAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
+.+|++.+.||++..|+.+ .+.+||+.+.||++|.| ..++++|. .+--++-+|+++|.||++++|.++
T Consensus 67 gieIhp~A~IG~g~fIdHg----~GvVIgeta~IGddv~I-----~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~ 137 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHG----TGVVIGETAVIGDDVTI-----YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGN 137 (194)
T ss_pred ceeeCCCCeECCceEEcCC----ceEEEcceeEECCCeEE-----EcceEecCCCCcCCCCCCccCCCeEECCCCEEEcc
Confidence 4455555555555555443 25667777777776666 33333332 111336799999999999999887
Q ss_pred CCCCcceeeeEECCCCEECCCcEE
Q 015259 366 GDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 366 ~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
-.||+|+.||+|++|
T Consensus 138 ---------I~IGd~akIGA~sVV 152 (194)
T COG1045 138 ---------IEIGDNAKIGAGSVV 152 (194)
T ss_pred ---------eEECCCCEECCCceE
Confidence 899999999999999
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8e-09 Score=99.00 Aligned_cols=89 Identities=30% Similarity=0.384 Sum_probs=73.9
Q ss_pred ECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCE
Q 015259 304 IHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVG 382 (410)
Q Consensus 304 i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~ 382 (410)
+.. +.|.++++||++|.|++++.|+ +++||+||.|++++.|.+|+|+++|.|++++.|.+ |+||++|.
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~----------sIi~~~~~ 321 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGD----------SIIGENCK 321 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEee----------eEEcCCcE
Confidence 444 6677788888888888888887 58889999999999999999999999999999999 99999999
Q ss_pred ECCC-----cEE-cceEEcCCcEEccc
Q 015259 383 VEDE-----VVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 383 i~~~-----~~v-~~~~v~~~~~v~~~ 403 (410)
||++ +.+ .++.+.+|.+++.+
T Consensus 322 ig~~~~i~d~~~g~~~~i~~g~~~~~~ 348 (358)
T COG1208 322 IGASLIIGDVVIGINSEILPGVVVGPG 348 (358)
T ss_pred ECCceeecceEecCceEEcCceEeCCC
Confidence 9961 333 46667777777654
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-09 Score=103.70 Aligned_cols=67 Identities=15% Similarity=0.290 Sum_probs=64.2
Q ss_pred CcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc
Q 015259 313 NVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
+++||++|+| ++|.|.+|+|+++|.|+++|.|.+|+|+++|.|+++|+|.+ |+|+++|.|++++.+.
T Consensus 327 ~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~----------~ii~~~~~i~~~~~i~ 393 (425)
T PRK00725 327 NSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRR----------CVIDRGCVIPEGMVIG 393 (425)
T ss_pred eCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEee----------EEECCCCEECCCCEEC
Confidence 8999999999 79999999999999999999999999999999999999987 9999999999998884
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=101.08 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=67.2
Q ss_pred CCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECC----------------C---CEECCCc
Q 015259 300 PSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGW----------------K---SSIGRWS 360 (410)
Q Consensus 300 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~----------------~---~~i~~~~ 360 (410)
+.+.+ .++.|.+ ++|+++|+|+ +|.|.+|+|+++|.|+++|+|.+|+++. + +.|+++|
T Consensus 304 ~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 380 (436)
T PLN02241 304 PPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENT 380 (436)
T ss_pred CCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCC
Confidence 44555 4677764 9999999999 9999999999999999999999998866 3 3899999
Q ss_pred EEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 361 RVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 361 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.|.+ ++|+++++||+++++
T Consensus 381 ~i~~----------~vI~~~v~Ig~~~~i 399 (436)
T PLN02241 381 KIRN----------AIIDKNARIGKNVVI 399 (436)
T ss_pred EEcc----------eEecCCCEECCCcEE
Confidence 9987 899999999999998
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=91.87 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=57.9
Q ss_pred cCeEECCCCEECCCcEECCCcEECCCcEECCCC-EEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEcc----CCCC
Q 015259 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGV-RLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA----EGDF 368 (410)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~-~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~----~~~~ 368 (410)
.+++|...+.|.-|+.|+++++|.+++.|..++ +|+++.| ++.|++ +|+|++++.|+.++.|.+ +...
T Consensus 152 ~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~iI--~g~I~H-----dvvIGd~~~IgpGvsI~G~LsGg~~~ 224 (319)
T TIGR03535 152 TGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGASMV--EGRISA-----GVVVGDGSDIGGGASIMGTLSGGGKE 224 (319)
T ss_pred CccEECCCceeeeccEECCCCEEcCCCEEccCceEecCceE--EEEEcc-----CCEECCCCEECCCceecceecCCCcc
Confidence 345555555555555555555555555555555 3443332 233333 345666666666666443 1101
Q ss_pred CcceeeeEECCCCEECCCcEE-----cceEEcCCcEEcccCCC
Q 015259 369 NAKLGITILGEAVGVEDEVVV-----TNSIVLPNKTLNVSVHQ 406 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v-----~~~~v~~~~~v~~~~~~ 406 (410)
| +.||++|+||.|+.| .+|+|++|++|....+-
T Consensus 225 p-----V~IGe~~~IGagA~IGI~IGd~~VVGAGaVVtkgT~v 262 (319)
T TIGR03535 225 V-----ISIGERCLLGANSGLGISLGDDCVVEAGLYVTAGTKV 262 (319)
T ss_pred c-----EEECCCcEECCCCEECeEECCCCEECCCCEEeCCeEE
Confidence 1 577777777777777 68888888888876653
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=94.82 Aligned_cols=76 Identities=24% Similarity=0.180 Sum_probs=65.8
Q ss_pred CcEEccCeEECCCCEECC--CcEECCCcEECCCcEECCCCEEee---------eEECCCCEECCCCEEE-eeEECCCCEE
Q 015259 289 NATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSSI 356 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (410)
+..|++.+.||+++.|.. +++|+++++||++|.|+.+++|++ ++||++|.||.++.|. +++||+++.|
T Consensus 226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~I 305 (360)
T PLN02357 226 AVDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKI 305 (360)
T ss_pred ceeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEE
Confidence 567888888998888885 678888899999999998888864 7899999999998886 8899999999
Q ss_pred CCCcEEcc
Q 015259 357 GRWSRVQA 364 (410)
Q Consensus 357 ~~~~~i~~ 364 (410)
|.++.|..
T Consensus 306 GAgSVV~~ 313 (360)
T PLN02357 306 GAGSVVLK 313 (360)
T ss_pred CCCCEECc
Confidence 99998887
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.1e-09 Score=83.08 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=83.7
Q ss_pred eEECCCCEECCCcEEC---CCcEECCCcEECCCCEEe-------------eeEECCCCEECCCCEEEeeEECCCCEECCC
Q 015259 296 VYVHPSAKIHPTAKIG---PNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (410)
..+.-.+.|.+|+.|+ .++.+|..|+++.++.|. +.-||+++.|+++|++.-+.|+..+.+|.+
T Consensus 34 I~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gkn 113 (184)
T KOG3121|consen 34 ILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKN 113 (184)
T ss_pred EEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccc
Confidence 3444455666777777 368889999998888886 366999999999999999999999999999
Q ss_pred cEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEcccCC
Q 015259 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVH 405 (410)
Q Consensus 360 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~ 405 (410)
+.|+.+ |+|.|.|.|.+++++ +.+++.|.++++.+-.
T Consensus 114 aviGrr---------CVlkdCc~ild~tVlPpet~vppy~~~~g~p~ 151 (184)
T KOG3121|consen 114 AVIGRR---------CVLKDCCRILDDTVLPPETLVPPYSTIGGNPA 151 (184)
T ss_pred eeEcCc---------eEhhhheeccCCcccCcccccCCceEEcCCCc
Confidence 999998 999999999999999 5777888888876544
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.6e-09 Score=93.23 Aligned_cols=76 Identities=26% Similarity=0.168 Sum_probs=61.4
Q ss_pred CcEEccCeEECCCCEECC--CcEECCCcEECCCcEECCCCEEee---------eEECCCCEECCCCEEE-eeEECCCCEE
Q 015259 289 NATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSSI 356 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (410)
+..|++.+.||+++.|.. +++|++++.||++|+|..++++++ ++||++|.||.++.|. +++||+++.|
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~I 239 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKI 239 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEE
Confidence 567888888888888876 788888899999999998888863 6788888888888774 7777777777
Q ss_pred CCCcEEcc
Q 015259 357 GRWSRVQA 364 (410)
Q Consensus 357 ~~~~~i~~ 364 (410)
|+++.+..
T Consensus 240 GAgSVV~k 247 (294)
T PLN02694 240 GAGSVVLI 247 (294)
T ss_pred CCCCEECC
Confidence 77776665
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=96.95 Aligned_cols=91 Identities=20% Similarity=0.084 Sum_probs=57.5
Q ss_pred ccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcce
Q 015259 293 IGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKL 372 (410)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~ 372 (410)
.+.+.+.+.+.|+++|.| +++.|+..|.||++|.|++++|+++|.|+++|+|.+|.| .++.|+++++|.++
T Consensus 246 ~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i-~~s~i~~~~~i~~~------- 316 (353)
T TIGR01208 246 DDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEV-EHSIVLDESVIEGV------- 316 (353)
T ss_pred CCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEE-EeeEEcCCCEEcCC-------
Confidence 344566666666777777 466666667777777777777777777777777776666 36777777766553
Q ss_pred eee-EECCCCEECCCcEE-cceEEc
Q 015259 373 GIT-ILGEAVGVEDEVVV-TNSIVL 395 (410)
Q Consensus 373 ~~~-~i~~~~~i~~~~~v-~~~~v~ 395 (410)
. .+ +++.|+.++.+ +++.+.
T Consensus 317 --~~~~-~~~ii~~~~~i~~~~~~~ 338 (353)
T TIGR01208 317 --QARI-VDSVIGKKVRIKGNRRRP 338 (353)
T ss_pred --ccee-ecCEEcCCCEECCCcccc
Confidence 2 33 45666666666 233443
|
Alternate name: dTDP-D-glucose synthase |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-08 Score=76.65 Aligned_cols=32 Identities=31% Similarity=0.259 Sum_probs=14.2
Q ss_pred EECCCCEECCCCEEE-eeEECCCCEECCCcEEc
Q 015259 332 IILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (410)
Q Consensus 332 ~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (410)
+|+++|.|+.++.+. .+.|++++.|++++.|.
T Consensus 56 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 56 TIGDNVVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred EECCCcEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 344444444444444 24444444444444443
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=97.72 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=55.7
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEcc
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (410)
+.|+++|.|+++ .+. +++||++|+|+++|.|.+|+|++++.|+++|+|.+|+|++++.|+.++.|++
T Consensus 295 ~~ig~~~~I~~~-~v~-~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 295 SLVSEGCIISGA-TVS-HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CEECCCCEECCC-EEE-ccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 444444444433 333 8999999999999999999999999999999999999999999999988863
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-08 Score=77.66 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=51.5
Q ss_pred CcEECCCcEECCCCEEe---eeEECCCCEECCCCEEEee----EECCCCEECCCcEEccCCCCCcceeeeEECCCCEECC
Q 015259 313 NVSISANARIGAGVRLI---SCIILDGVEIMENAVVTNA----IVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVED 385 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~----~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~ 385 (410)
+..||++|.|++++.|. ...||++|.|++++.|... ...+...+...+.|+.+ +.|+.++.|..
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~---------~~ig~~~~i~~ 73 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDG---------AWVAAEAFVGP 73 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCC---------CEECCCCEECC
Confidence 34556666666666664 3567777777777776421 11112223334444444 55555555666
Q ss_pred CcEE-cceEEcCCcEEcccCCCccc
Q 015259 386 EVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 386 ~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
+++| .+|+|++++.|.+++++..+
T Consensus 74 g~~Ig~~~~i~~gs~v~~~~~~~~~ 98 (107)
T cd05825 74 GVTIGEGAVVGARSVVVRDLPAWTV 98 (107)
T ss_pred CCEECCCCEECCCCEEeCcCCCCCE
Confidence 6666 57788888888888776543
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-08 Score=91.13 Aligned_cols=77 Identities=23% Similarity=0.166 Sum_probs=52.0
Q ss_pred CCcEEccCeEEC--CCCEECCCcEECCCcEECCCcEECCCCEE---eeeEECCCCEECCCCEEE-eeEECCCCEECCCcE
Q 015259 288 KNATIIGDVYVH--PSAKIHPTAKIGPNVSISANARIGAGVRL---ISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSR 361 (410)
Q Consensus 288 ~~~~i~~~~~i~--~~~~i~~~~~i~~~~~ig~~~~i~~~~~i---~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~ 361 (410)
..+.|+.+++|+ .++.|+++|+|+.++.|..+|+||....- .+.+||++|.||.++.|. ++.||+++.||+++.
T Consensus 210 p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSV 289 (355)
T PLN02739 210 PAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSL 289 (355)
T ss_pred CCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCE
Confidence 466777777774 47777777666666666666666532111 136678888888888776 677777777777776
Q ss_pred Ecc
Q 015259 362 VQA 364 (410)
Q Consensus 362 i~~ 364 (410)
|..
T Consensus 290 V~k 292 (355)
T PLN02739 290 VLK 292 (355)
T ss_pred ECC
Confidence 655
|
|
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-09 Score=97.89 Aligned_cols=151 Identities=16% Similarity=0.103 Sum_probs=97.9
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccC---CccchhhhHhhccc-------------EEEecccchHHHHHHHHhhc
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR-------------IYLVGFYEEREFALYVSSIS 73 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~---g~pli~~~l~~l~~-------------i~vv~~~~~~~i~~~~~~~~ 73 (410)
.+|+|||| .|+||+ .+.||+|+|++ |+|++++.++.+.. +++...+..+.+.+++++..
T Consensus 2 a~viLaGG--~GtRLg---~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 2 AVVLLAGG--LGTRLG---KDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred EEEEECCC--CccccC---CCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 57999999 999996 58999999999 99999999999853 44445566678889998753
Q ss_pred ccCCccEEEeeC-CCCCCcHHHHHHhHHHhcccC-CCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCc-----
Q 015259 74 NELRIPVRYLRE-DKPHGSAGALYNFRDLIMEDN-PSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSA----- 146 (410)
Q Consensus 74 ~~~~~~i~~i~~-~~~~g~~~~l~~~~~~l~~~~-~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~----- 146 (410)
... ..+.+..| ..+..+.++... +.... .+....-+||++.......+++.|++++.....+ ...+.
T Consensus 77 ~~~-~~v~~f~Q~~~P~~~~~~~~~----~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v-~~vDN~la~v 150 (266)
T cd04180 77 QKN-SYVITFMQGKLPLKNDDDARD----PHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHF-IGVDNLLVKV 150 (266)
T ss_pred CCC-CceEEEEeCCceEEeCCCCcc----cCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEE-EccCccCccc
Confidence 111 23433333 334444444331 21111 1345566788887666778888888877663332 22221
Q ss_pred ccccccceEEEcCCCCcEEEEecCCC
Q 015259 147 ESASQFGELVADPDTNELLHYTEKPE 172 (410)
Q Consensus 147 ~~~~~~~~v~~d~~~~~v~~i~ekp~ 172 (410)
.++..+|++..+ +.+.+..+.+|+.
T Consensus 151 ~DP~~lG~~~~~-~~~~~~kvv~K~~ 175 (266)
T cd04180 151 ADPLFIGIAIQN-RKAINQKVVPKTR 175 (266)
T ss_pred cCHHHHHHHHHc-CCCEEEEEEECCC
Confidence 355567766655 4567777777754
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-08 Score=95.86 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=60.2
Q ss_pred CCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCC
Q 015259 318 ANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPN 397 (410)
Q Consensus 318 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~ 397 (410)
+.+.|++++.|.+|+||++|+|+ +.|.+|+|+++|.|+++|+|.+ |+|++++.|++++.+.+|+|+.+
T Consensus 277 ~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~----------sii~~~~~I~~~~~i~~~ii~~~ 344 (369)
T TIGR02092 277 PPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALIKN----------CIIMQRTVIGEGAHLENVIIDKD 344 (369)
T ss_pred CCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEe----------eEEeCCCEECCCCEEEEEEECCC
Confidence 45555566666778888888886 4688889999999999998887 88999999999888888888888
Q ss_pred cEEcccC
Q 015259 398 KTLNVSV 404 (410)
Q Consensus 398 ~~v~~~~ 404 (410)
++|+++.
T Consensus 345 ~~v~~~~ 351 (369)
T TIGR02092 345 VVIEPNV 351 (369)
T ss_pred CEECCCC
Confidence 8887643
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.3e-08 Score=82.88 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=49.1
Q ss_pred CcEECCCcEECCCCEEe---eeEECCCCEECCCCEEEeeE-------ECCCCEECCCcEEccCCCCCcceeeeEECCCCE
Q 015259 313 NVSISANARIGAGVRLI---SCIILDGVEIMENAVVTNAI-------VGWKSSIGRWSRVQAEGDFNAKLGITILGEAVG 382 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~-------i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~ 382 (410)
++.||+++.|+.++.|. +..||++|.|+++|.|.... ...+..++..+.|+.+ +.||.++.
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~---------~~Ig~~a~ 132 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDN---------VWIGGGVI 132 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCC---------EEECCCCE
Confidence 34444444444444442 34566666666666664210 0022233444455554 56666666
Q ss_pred ECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 383 VEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 383 i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
|.++++| .+|+|+++++|..++++..+
T Consensus 133 I~~gv~Ig~~~~VgagavV~~~vp~~~v 160 (169)
T cd03357 133 ILPGVTIGDNSVIGAGSVVTKDIPANVV 160 (169)
T ss_pred EeCCCEECCCCEECCCCEEccccCCCcE
Confidence 6666666 57778888888888887654
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.3e-08 Score=70.88 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=19.4
Q ss_pred EECCCcEECCCCEEee-eEECCCCEECCCCEEEeeE
Q 015259 315 SISANARIGAGVRLIS-CIILDGVEIMENAVVTNAI 349 (410)
Q Consensus 315 ~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~ 349 (410)
.||+++.|++++.|.+ ++|+++|.|++++.|.+..
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ 37 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAAT 37 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEecc
Confidence 3445555555555543 5566666666666666443
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.9e-08 Score=82.91 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=53.5
Q ss_pred CCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEee-------EECCCCEECCCcEEccCCCCCcceeeeEE
Q 015259 305 HPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNA-------IVGWKSSIGRWSRVQAEGDFNAKLGITIL 377 (410)
Q Consensus 305 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~-------~i~~~~~i~~~~~i~~~~~~~~~~~~~~i 377 (410)
+.++.|+.+++|+.+|+|++.+.| .||++|.|+.+|.|... ....+..++..+.|+.+ +.|
T Consensus 71 g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~---------v~I 138 (183)
T PRK10092 71 GYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNN---------VWI 138 (183)
T ss_pred cCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCC---------cEE
Confidence 333444444444444444444332 67777778777777521 01112333444455554 566
Q ss_pred CCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 378 GEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 378 ~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
|.+|.|.++++| .+|+|++|++|..++++..+
T Consensus 139 G~~a~I~~gv~IG~~~vIgagsvV~~di~~~~i 171 (183)
T PRK10092 139 GGRAVINPGVTIGDNVVVASGAVVTKDVPDNVV 171 (183)
T ss_pred CCCCEECCCCEECCCCEECCCCEEccccCCCcE
Confidence 666666666666 57788899999988887654
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.1e-08 Score=76.12 Aligned_cols=16 Identities=31% Similarity=0.183 Sum_probs=7.6
Q ss_pred eEECCCCEECCCCEEE
Q 015259 331 CIILDGVEIMENAVVT 346 (410)
Q Consensus 331 ~~i~~~~~i~~~~~i~ 346 (410)
+.||++|.|+++|+|.
T Consensus 22 v~IG~~~~Ig~~~~i~ 37 (109)
T cd04647 22 ITIGDNVLIGPNVTIY 37 (109)
T ss_pred eEECCCCEECCCCEEE
Confidence 3444444444444444
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-07 Score=86.37 Aligned_cols=158 Identities=18% Similarity=0.341 Sum_probs=102.5
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccC---CccchhhhHhhccc----------------EEEecc-cchHHHH
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR----------------IYLVGF-YEEREFA 66 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~---g~pli~~~l~~l~~----------------i~vv~~-~~~~~i~ 66 (410)
.++.+|||||| .|+|| +...||+|+|++ |+|++++.++.+.. +++.++ +..+.+.
T Consensus 14 ~~va~viLaGG--~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~ 88 (323)
T cd04193 14 GKVAVLLLAGG--QGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETR 88 (323)
T ss_pred CCEEEEEECCC--ccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHH
Confidence 37899999999 99999 558899999998 79999999998764 345555 6667888
Q ss_pred HHHHhhcccCCc---cEEEeeC---------------------CCCCCcHHHHHH-----hHHHhcccCCCcEEEEcCCc
Q 015259 67 LYVSSISNELRI---PVRYLRE---------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDV 117 (410)
Q Consensus 67 ~~~~~~~~~~~~---~i~~i~~---------------------~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~ 117 (410)
+++++. ..||. .+.+..| ..+.|.++-... .++.+.+..-+++.+...|.
T Consensus 89 ~~~~~~-~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 167 (323)
T cd04193 89 KFFKEN-NYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDN 167 (323)
T ss_pred HHHHhC-CcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCc
Confidence 999873 44555 4444322 125577664443 23444444467889999998
Q ss_pred cc-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEE-cCCCCcEEEEecCCC
Q 015259 118 CC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA-DPDTNELLHYTEKPE 172 (410)
Q Consensus 118 i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~-d~~~~~v~~i~ekp~ 172 (410)
+. ..--..+|-.+..+++++.+-+.+... ....-|.+.. | ..-.++.+.+-|.
T Consensus 168 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~-~~ekvG~l~~~~-g~~~vvEysel~~ 222 (323)
T cd04193 168 ILVKVADPVFIGFCISKGADVGAKVVRKRY-PTEKVGVVVLVD-GKPQVVEYSEISD 222 (323)
T ss_pred ccccccCHHHhHHHHHcCCceEEEEEECCC-CCCceeEEEEEC-CeEEEEEeecCCH
Confidence 63 333345666777778887775554311 1223454443 3 2335666666543
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.8e-08 Score=87.00 Aligned_cols=110 Identities=24% Similarity=0.320 Sum_probs=71.3
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch--HHHHHHHHhhcccCCccEEE
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE--REFALYVSSISNELRIPVRY 82 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~--~~i~~~~~~~~~~~~~~i~~ 82 (410)
||||||| .++|| + +|.|++++|+|||+|+++.+.. ++|++.... +.+.+++.. .+ +.+
T Consensus 2 aiIlA~G--~S~R~-~-----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~----~~--v~~ 67 (233)
T cd02518 2 AIIQARM--GSTRL-P-----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK----LG--VKV 67 (233)
T ss_pred EEEeeCC--CCCCC-C-----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH----cC--CeE
Confidence 7999999 99999 3 4999999999999999999864 667766543 445555432 22 333
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceE
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGT 138 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~ 138 (410)
+.... .+.......+.+.. ..+.++++.||.++ ...+..+++.+...+.+++
T Consensus 68 v~~~~-~~~l~~~~~~~~~~---~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 68 FRGSE-EDVLGRYYQAAEEY---NADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred EECCc-hhHHHHHHHHHHHc---CCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 33222 12222222222212 24679999999996 3458899888765544433
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.1e-08 Score=87.44 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=55.1
Q ss_pred CcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCC
Q 015259 307 TAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDE 386 (410)
Q Consensus 307 ~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~ 386 (410)
++.|++.+.+.+.++||+|+. ||.++.||++++|..|||-++|.|.+|+.+.+ |+||+++.||.+
T Consensus 288 dVyIhPsakvhptAkiGPNVS-----Iga~vrvg~GvRl~~sIIl~d~ei~enavVl~----------sIigw~s~iGrW 352 (407)
T KOG1460|consen 288 DVYIHPSAKVHPTAKIGPNVS-----IGANVRVGPGVRLRESIILDDAEIEENAVVLH----------SIIGWKSSIGRW 352 (407)
T ss_pred eeEEcCcceeCCccccCCCce-----ecCCceecCCceeeeeeeccCcEeeccceEEe----------eeecccccccce
Confidence 344444444444444444444 48889999999999999999999999999999 999999999988
Q ss_pred cEEcc
Q 015259 387 VVVTN 391 (410)
Q Consensus 387 ~~v~~ 391 (410)
+.+++
T Consensus 353 aRVe~ 357 (407)
T KOG1460|consen 353 ARVEG 357 (407)
T ss_pred eeecc
Confidence 88843
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=78.00 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=39.2
Q ss_pred EEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 345 VTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 345 i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
..+++|+++|+||.++.|..+ +.||++++|+++++|.+. +.+++++..
T Consensus 71 ~~~~~Ig~~~~Ig~~~~i~~g---------v~Ig~~~vIgags~V~~~-v~~~~v~~G 118 (145)
T cd03349 71 KGDVIIGNDVWIGHGATILPG---------VTIGDGAVIAAGAVVTKD-VPPYAIVGG 118 (145)
T ss_pred cCCcEECCCCEECCCCEEeCC---------CEECCCCEECCCCEEccc-cCCCeEEEe
Confidence 347899999999999999887 899999999999999654 566666643
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.5e-07 Score=75.57 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=106.6
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+..|||+|-| .+.|... |-+.+++|+|||.|+++.+.+ -+|+....++.++.. ..+|.++-+
T Consensus 3 ~~iAiIpAR~--gSKgI~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~Il~~A-----~~ygak~~~ 69 (228)
T COG1083 3 KNIAIIPARG--GSKGIKN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEA-----KKYGAKVFL 69 (228)
T ss_pred ceEEEEeccC--CCCcCCc------cchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHHHHHHH-----HHhCccccc
Confidence 6789999999 7777755 999999999999999999988 444554444444443 345665544
Q ss_pred eeCCC----CCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEE
Q 015259 83 LREDK----PHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELV 156 (410)
Q Consensus 83 i~~~~----~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 156 (410)
.++.+ ...+..++..+.+.++.. .+.++++.+-.+ ...++++..+.+.+...+..+.+.+. + ...|....
T Consensus 70 ~Rp~~LA~D~ast~~~~lh~le~~~~~-~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~--e-~~p~k~f~ 145 (228)
T COG1083 70 KRPKELASDRASTIDAALHALESFNID-EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVEC--E-HHPYKAFS 145 (228)
T ss_pred cCChhhccCchhHHHHHHHHHHHhccc-cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeec--c-cchHHHHH
Confidence 43321 223335566666666532 344777887766 45679999999988877766666554 2 22233223
Q ss_pred EcCCCCcEEEEecCCC-------CccccceeeeEEEEcHHHHH
Q 015259 157 ADPDTNELLHYTEKPE-------TFVSDLINCGVYVFTPDIFN 192 (410)
Q Consensus 157 ~d~~~~~v~~i~ekp~-------~~~~~l~~~Giy~~~~~~~~ 192 (410)
.+ ++.+..+.+.++ -+.....+..+|+++.+.|-
T Consensus 146 ~~--~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~ 186 (228)
T COG1083 146 LN--NGEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALL 186 (228)
T ss_pred hc--CCceeecccCCccccccccchhhhhhcCcEEEehHHHHh
Confidence 22 466777776652 12333446778998888763
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.5e-07 Score=77.36 Aligned_cols=78 Identities=27% Similarity=0.252 Sum_probs=45.4
Q ss_pred CCCcEEccCeEECC--CCEECCCcEECCCcEECCCcEECCCCEE---eeeEECCCCEECCCCEEE-eeEECCCCEECCCc
Q 015259 287 TKNATIIGDVYVHP--SAKIHPTAKIGPNVSISANARIGAGVRL---ISCIILDGVEIMENAVVT-NAIVGWKSSIGRWS 360 (410)
Q Consensus 287 ~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~i---~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~ 360 (410)
..+++|++..+|.= +.+|++.|.|+.++.|-.+++||-...= .+-.||+|++||.++.|- +..||+|+.||++|
T Consensus 71 hp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~s 150 (194)
T COG1045 71 HPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGS 150 (194)
T ss_pred CCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCCc
Confidence 44666776666533 3344443333333333333333321111 135678888888888776 77888888888888
Q ss_pred EEcc
Q 015259 361 RVQA 364 (410)
Q Consensus 361 ~i~~ 364 (410)
.+..
T Consensus 151 VVlk 154 (194)
T COG1045 151 VVLK 154 (194)
T ss_pred eEcc
Confidence 7766
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-07 Score=85.28 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=62.1
Q ss_pred cEECCCcEECCCCEEee-eEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cc
Q 015259 314 VSISANARIGAGVRLIS-CIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TN 391 (410)
Q Consensus 314 ~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~ 391 (410)
..+.+-..+|++|.|++ ++||.+|.|++++.|.+|++..++.++.++.|.. +++|.++.||-|+++ ++
T Consensus 265 vlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s----------~ivg~~~~IG~~~~id~~ 334 (371)
T KOG1322|consen 265 VLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISS----------SIVGWNVPIGIWARIDKN 334 (371)
T ss_pred EeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHh----------hhccccccccCceEEecc
Confidence 33333333344444442 5569999999999999999999999999999998 899999999999999 57
Q ss_pred eEEcCCcEEcc
Q 015259 392 SIVLPNKTLNV 402 (410)
Q Consensus 392 ~~v~~~~~v~~ 402 (410)
|++|...+|..
T Consensus 335 a~lG~nV~V~d 345 (371)
T KOG1322|consen 335 AVLGKNVIVAD 345 (371)
T ss_pred cEeccceEEec
Confidence 78888877754
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.4e-07 Score=73.61 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=22.2
Q ss_pred eEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||.++.|.++++| .+|+|+++++|..++++..+
T Consensus 80 ~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v 115 (145)
T cd03349 80 VWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAI 115 (145)
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEccccCCCeE
Confidence 444444555555555 57777788888888777643
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=3e-05 Score=75.73 Aligned_cols=181 Identities=15% Similarity=0.195 Sum_probs=113.9
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCcccccc-CCccchhhhHhhccc----------EEEecc-cchHHHHHHHHhhcc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL-GGQPMVHHPISACKR----------IYLVGF-YEEREFALYVSSISN 74 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi-~g~pli~~~l~~l~~----------i~vv~~-~~~~~i~~~~~~~~~ 74 (410)
.++.+|.|||| .||||+- ..||.++++ .|+++++..++.+.. .++-++ ..++...+++++..
T Consensus 78 ~k~avlkLnGG--lGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~- 151 (469)
T PLN02474 78 DKLVVLKLNGG--LGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYT- 151 (469)
T ss_pred hcEEEEEecCC--cccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcC-
Confidence 46889999999 9999997 889999999 457998888887765 344444 34556777777632
Q ss_pred cCCccEEEeeC------------------------CCCCCcHHHHHH-----hHHHhcccCCCcEEEEcCCcccCCChHH
Q 015259 75 ELRIPVRYLRE------------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCCSFPLPE 125 (410)
Q Consensus 75 ~~~~~i~~i~~------------------------~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~i~~~~l~~ 125 (410)
..+.++.+..| ..+.|.++-+.. .++.+.+..-+++.+.+.|.+...-=..
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~ 231 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH
Confidence 22333332211 124455554332 2344444456889999999985333344
Q ss_pred HHHHHHhcCCceEEEEEecCcccccccceEEE-cCCCCcEEEEecCCCC--------ccccceeeeEEEEcHHHHHHhh
Q 015259 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVA-DPDTNELLHYTEKPET--------FVSDLINCGVYVFTPDIFNAIQ 195 (410)
Q Consensus 126 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~-d~~~~~v~~i~ekp~~--------~~~~l~~~Giy~~~~~~~~~l~ 195 (410)
++..+..+++++++-+.+....+ ..-|.+.. + ..-+++.+.+-|.+ ....+.+++.++|+-+.++.+.
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~~d-gk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~ 308 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLAD-VKGGTLISYE-GKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCC-CCccEEEEEC-CEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHh
Confidence 77777778888777665432111 12354443 3 22357777776532 2456778999999988876653
|
|
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-07 Score=75.20 Aligned_cols=91 Identities=20% Similarity=0.137 Sum_probs=67.4
Q ss_pred cEEccCeEECCCCEECCCcEEC---CCcEECCCcEECCCCEEee--------------eEECCCCEECCCCEEEeeEECC
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIG---PNVSISANARIGAGVRLIS--------------CIILDGVEIMENAVVTNAIVGW 352 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~--------------~~i~~~~~i~~~~~i~~~~i~~ 352 (410)
+.+.+++.|+++|.|+|.+++. +..+||+|+.|.+.+.|.| -+||.+.+..-+|..+-..+|+
T Consensus 21 s~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd 100 (190)
T KOG4042|consen 21 SDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGD 100 (190)
T ss_pred cccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcC
Confidence 4566777777888887777765 5678888888888777754 4566666666666666667788
Q ss_pred CCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 353 KSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 353 ~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
+.+|+..|.++++ +.+.++|.||+++.+
T Consensus 101 ~NVieskayvg~g---------v~vssgC~vGA~c~v 128 (190)
T KOG4042|consen 101 RNVIESKAYVGDG---------VSVSSGCSVGAKCTV 128 (190)
T ss_pred cceEeeeeEecCC---------cEEcCCceeccceEE
Confidence 8888887777777 777788888887777
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-07 Score=75.32 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=67.7
Q ss_pred CcEEcc---CeEECCCCEECCCcEECC------------CcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Q 015259 289 NATIIG---DVYVHPSAKIHPTAKIGP------------NVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWK 353 (410)
Q Consensus 289 ~~~i~~---~~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~ 353 (410)
+..|.+ ++.+|+.|.++.++.|++ +..||+++.|+++|++.-..||+.+++|.+| +||++
T Consensus 45 g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gkna-----viGrr 119 (184)
T KOG3121|consen 45 GVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNA-----VIGRR 119 (184)
T ss_pred CcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccce-----eEcCc
Confidence 444544 478888888888888885 3679999999999999888888888888776 66777
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
|++.+-|+|.++ +++...+.+.+-+++.
T Consensus 120 CVlkdCc~ild~---------tVlPpet~vppy~~~~ 147 (184)
T KOG3121|consen 120 CVLKDCCRILDD---------TVLPPETLVPPYSTIG 147 (184)
T ss_pred eEhhhheeccCC---------cccCcccccCCceEEc
Confidence 777777777776 6777777777776664
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-05 Score=78.23 Aligned_cols=179 Identities=17% Similarity=0.276 Sum_probs=108.7
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCcccccc---CCccchhhhHhhccc------------------EEEe-cccchHHH
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR------------------IYLV-GFYEEREF 65 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi---~g~pli~~~l~~l~~------------------i~vv-~~~~~~~i 65 (410)
++.+|||||| .|+||+. ..||+|+|| .|+|++++.++.+.. ++|. ..+..+.+
T Consensus 106 kvavViLAGG--~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 106 EVAVLILAGG--LGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CeEEEEECCC--CcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 6899999999 9999964 899999999 489999999998752 3344 54666778
Q ss_pred HHHHHhhcccCCc---cEEEeeC----------------------CCCCCcHHHHHHh-----HHHhcccCCCcEEEEcC
Q 015259 66 ALYVSSISNELRI---PVRYLRE----------------------DKPHGSAGALYNF-----RDLIMEDNPSHIFLLNC 115 (410)
Q Consensus 66 ~~~~~~~~~~~~~---~i~~i~~----------------------~~~~g~~~~l~~~-----~~~l~~~~~~~~lvl~~ 115 (410)
.+++++. ..+|. .|.+..| ..+.|.++-.... ++.+....-+++.+...
T Consensus 181 ~~~f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 259 (482)
T PTZ00339 181 RQFLEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISI 259 (482)
T ss_pred HHHHHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEec
Confidence 8888763 33343 2332211 1255776644432 34444444578888899
Q ss_pred CcccC-CChHHHHHHHHhcCC-ceEEEEEecCcccccccceEEEcCCCCcEEEEecCCC-----------Cccccceeee
Q 015259 116 DVCCS-FPLPEMLDAHRNYGG-MGTILVIKVSAESASQFGELVADPDTNELLHYTEKPE-----------TFVSDLINCG 182 (410)
Q Consensus 116 D~i~~-~~l~~~l~~~~~~~~-~~~l~~~~~~~~~~~~~~~v~~d~~~~~v~~i~ekp~-----------~~~~~l~~~G 182 (410)
|.+.. .--..++-.+...++ ++...+.+. .....-|++......-.|+.+.|-+. .......++.
T Consensus 260 DN~L~k~~DP~flG~~~~~~~~~~~~kvvk~--~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~ 337 (482)
T PTZ00339 260 DNILAKVLDPEFIGLASSFPAHDVLNKCVKR--EDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNIC 337 (482)
T ss_pred CcccccccCHHHhHHHHHCCchhheeeeecC--CCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceE
Confidence 98843 333445566665555 444333333 11223455543212225777766431 1112445677
Q ss_pred EEEEcHHHHHHh
Q 015259 183 VYVFTPDIFNAI 194 (410)
Q Consensus 183 iy~~~~~~~~~l 194 (410)
.++|+-+.++.+
T Consensus 338 ~h~fsl~fl~~~ 349 (482)
T PTZ00339 338 SHIFSLDFLKKV 349 (482)
T ss_pred EEEEEHHHHHHH
Confidence 888998887755
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=74.95 Aligned_cols=88 Identities=19% Similarity=0.179 Sum_probs=54.9
Q ss_pred CeEECCCCEECCCcEE--CCCcEECCCcEECCCCEEee-eEECCCCEECCC--CEEEeeEECCCCEECCCcEEccCCCCC
Q 015259 295 DVYVHPSAKIHPTAKI--GPNVSISANARIGAGVRLIS-CIILDGVEIMEN--AVVTNAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~--~~i~~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
...+|.++.++.++.+ ..+..||+++.+++++.|.. +..++...-... .....++|+++|+||.++.|.++
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpG---- 142 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPG---- 142 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCC----
Confidence 3444555555554443 24555666666666666642 112222222221 11225899999999999999998
Q ss_pred cceeeeEECCCCEECCCcEEcc
Q 015259 370 AKLGITILGEAVGVEDEVVVTN 391 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~ 391 (410)
++||++++||+++++.+
T Consensus 143 -----V~IG~gavigagsVVtk 159 (190)
T COG0110 143 -----VTIGEGAVIGAGSVVTK 159 (190)
T ss_pred -----EEECCCcEEeeCCEEeC
Confidence 89999999999988855
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.1e-07 Score=76.03 Aligned_cols=78 Identities=24% Similarity=0.321 Sum_probs=50.8
Q ss_pred ECCCCEECCCcEEC--CCcEECCCcEECCCCEEeeeEECCCCEECC---CCEEEeeEECCCCEECCCcEEccCCCCCcce
Q 015259 298 VHPSAKIHPTAKIG--PNVSISANARIGAGVRLISCIILDGVEIME---NAVVTNAIVGWKSSIGRWSRVQAEGDFNAKL 372 (410)
Q Consensus 298 i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~ 372 (410)
|+|.+.||.|-.+. -+++||+-.+||.+++| ..++.+|. ++-=++-.|++||.||.++.|.++
T Consensus 151 ihpaa~ig~gilldhatgvvigeTAvvg~~vSi-----lH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgn------- 218 (269)
T KOG4750|consen 151 IHPAAKIGKGILLDHATGVVIGETAVVGDNVSI-----LHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGN------- 218 (269)
T ss_pred ccchhhcccceeeccccceeecceeEeccceee-----ecceeeccccccccccCCcccCCeEEccccEEeCC-------
Confidence 44444554444433 24566666666665555 44444432 222235689999999999999887
Q ss_pred eeeEECCCCEECCCcEE
Q 015259 373 GITILGEAVGVEDEVVV 389 (410)
Q Consensus 373 ~~~~i~~~~~i~~~~~v 389 (410)
..||++++|++|++|
T Consensus 219 --V~IGegavIaAGsvV 233 (269)
T KOG4750|consen 219 --VTIGEGAVIAAGSVV 233 (269)
T ss_pred --eeECCCcEEeccceE
Confidence 899999999888888
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.4e-06 Score=72.99 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=49.4
Q ss_pred CCcEECCCcEECCCCEEe---eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCc
Q 015259 312 PNVSISANARIGAGVRLI---SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEV 387 (410)
Q Consensus 312 ~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~ 387 (410)
.+..+|.+|.++.++.+. +..||+++.++.++.|. .+..++...-..+. ....+.++||++||||.++
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~--------~~~~~~v~IG~~vwIG~~a 137 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGA--------LVGAGPVTIGEDVWIGAGA 137 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCC--------ceecCCeEECCCeEEcCcc
Confidence 355666666666666642 34466666666666555 22222111111110 0001114555555555555
Q ss_pred EE-------cceEEcCCcEEcccCCCcccC
Q 015259 388 VV-------TNSIVLPNKTLNVSVHQEIIL 410 (410)
Q Consensus 388 ~v-------~~~~v~~~~~v~~~~~~~~~~ 410 (410)
+| .+++|++|++|+.++|+..++
T Consensus 138 ~IlpGV~IG~gavigagsVVtkdvp~~~iv 167 (190)
T COG0110 138 VILPGVTIGEGAVIGAGSVVTKDVPPYGIV 167 (190)
T ss_pred EECCCEEECCCcEEeeCCEEeCccCCCeEE
Confidence 44 688899999999999987653
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=88.45 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=54.5
Q ss_pred cEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cce
Q 015259 314 VSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNS 392 (410)
Q Consensus 314 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~ 392 (410)
+.||++|.|+++|.|..-...++.. .+.+++|+++|.||.++.|.++ +.||+++.|++++.+ ++.
T Consensus 617 v~IGd~~~I~~~~~i~~h~~~~~~~-----~~~~v~IG~~~~IG~~a~V~~g---------~~IGd~a~Ig~~SvV~~g~ 682 (695)
T TIGR02353 617 VTIGDDSTLNEGSVIQTHLFEDRVM-----KSDTVTIGDGATLGPGAIVLYG---------VVMGEGSVLGPDSLVMKGE 682 (695)
T ss_pred eEECCCCEECCCCEEEecccccccc-----ccCCeEECCCCEECCCCEECCC---------CEECCCCEECCCCEEcCCc
Confidence 4667777776666664311112211 2447899999999999999887 999999999999999 456
Q ss_pred EEcCCcEEccc
Q 015259 393 IVLPNKTLNVS 403 (410)
Q Consensus 393 ~v~~~~~v~~~ 403 (410)
.+.+++++-.+
T Consensus 683 ~vp~~s~~~G~ 693 (695)
T TIGR02353 683 EVPAHTRWRGN 693 (695)
T ss_pred ccCCCCEEEec
Confidence 78888876543
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-06 Score=87.64 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=64.0
Q ss_pred eEECCCCEECCCcEE--CCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCccee
Q 015259 296 VYVHPSAKIHPTAKI--GPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLG 373 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~ 373 (410)
+.||+++.|++ ..+ -+...||+||.|+++|.+.+..+..+ ..++...+|+++|.||.+|.|.++
T Consensus 113 a~IG~~v~I~~-~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~-----~l~~g~i~IG~~~~IG~~s~I~~g-------- 178 (695)
T TIGR02353 113 AKIGKGVDIGS-LPPVCTDLLTIGAGTIVRKEVMLLGYRAERG-----RLHTGPVTLGRDAFIGTRSTLDID-------- 178 (695)
T ss_pred CEECCCCEEEe-eecccCCceEECCCCEECCCCEEEcccCCCC-----ceeecCcEECCCcEECCCCEEcCC--------
Confidence 45555555544 222 24567888888888888754333222 223345699999999999999887
Q ss_pred eeEECCCCEECCCcEEcc-eEEcCCcEEccc
Q 015259 374 ITILGEAVGVEDEVVVTN-SIVLPNKTLNVS 403 (410)
Q Consensus 374 ~~~i~~~~~i~~~~~v~~-~~v~~~~~v~~~ 403 (410)
+.||+++.|++++.+.+ ..|.++.++..+
T Consensus 179 -~~Igd~a~vgagS~V~~g~~v~~~~~~~G~ 208 (695)
T TIGR02353 179 -TSIGDGAQLGHGSALQGGQSIPDGERWHGS 208 (695)
T ss_pred -CEECCCCEECCCCEecCCcccCCCCEEEee
Confidence 89999999999999954 457777776554
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-06 Score=69.59 Aligned_cols=103 Identities=23% Similarity=0.201 Sum_probs=71.3
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEEe--------------eEECCCCEE
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVTN--------------AIVGWKSSI 356 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~--------------~~i~~~~~i 356 (410)
.+.|.|.|.+..-+.|++.++|+++|++.+.+++. .-+||+|+.|.+.+.|.+ -+||.+.+.
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF 87 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF 87 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence 46778888888888889999999999999999886 578999999999888864 456665554
Q ss_pred CCCcEEccCCCCCcce-eeeEECCCCEECCCcEE-cceEEcCCcEEcc
Q 015259 357 GRWSRVQAEGDFNAKL-GITILGEAVGVEDEVVV-TNSIVLPNKTLNV 402 (410)
Q Consensus 357 ~~~~~i~~~~~~~~~~-~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~ 402 (410)
.-+|..... ++ ..-+|+..+.+|+|+.+ ++|+||++-.|..
T Consensus 88 eVgc~s~A~-----kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~ 130 (190)
T KOG4042|consen 88 EVGCKSSAK-----KVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFS 130 (190)
T ss_pred Eeechhhhh-----hhcCcceEeeeeEecCCcEEcCCceeccceEEec
Confidence 434332220 00 01456666666666666 4777777666543
|
|
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.7e-06 Score=73.84 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=75.3
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
.|||+|-+ .++|+.. |.|.+++|+|||+|+++.+.+ |+|.+. .+.+.+.+.+ ++..+.+.
T Consensus 1 iaiIpAR~--gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd--~~~i~~~~~~----~g~~v~~~ 66 (217)
T PF02348_consen 1 IAIIPARG--GSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATD--DEEIDDIAEE----YGAKVIFR 66 (217)
T ss_dssp EEEEEE-S--SSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES--SHHHHHHHHH----TTSEEEE-
T ss_pred CEEEecCC--CCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCC--CHHHHHHHHH----cCCeeEEc
Confidence 38999999 8888866 999999999999999999988 555443 3455555543 55556555
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGM 136 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~ 136 (410)
..+...++......+...... ..+.++.+.||.++ ...+..+++.+.+...+
T Consensus 67 ~~~~~~~~~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 67 RGSLADDTDRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp -TTSSSHHHHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred ChhhcCCcccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 544444444444444444432 23468888999985 34588889988887654
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00019 Score=66.50 Aligned_cols=180 Identities=15% Similarity=0.212 Sum_probs=112.1
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccC-CccchhhhHhhccc----------EEEecc-cchHHHHHHHHhhcc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR----------IYLVGF-YEEREFALYVSSISN 74 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~-g~pli~~~l~~l~~----------i~vv~~-~~~~~i~~~~~~~~~ 74 (410)
.++.+|+|||| .||||+- +.||.++|+. |+++++..++.+.. .+|-++ ..++...+++++...
T Consensus 2 ~kvavl~LaGG--~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~ 76 (300)
T cd00897 2 NKLVVLKLNGG--LGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG 76 (300)
T ss_pred CcEEEEEecCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC
Confidence 46889999999 9999976 8899999995 55999999998865 344444 445667788876321
Q ss_pred cCCccEEEee------------------------CCCCCCcHHHHHH-----hHHHhcccCCCcEEEEcCCcccCCChHH
Q 015259 75 ELRIPVRYLR------------------------EDKPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCCSFPLPE 125 (410)
Q Consensus 75 ~~~~~i~~i~------------------------~~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~i~~~~l~~ 125 (410)
.+..+.+.. ...+.|.++-... .++.+.+..-+++.+.+.|.+...-=..
T Consensus 77 -~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~ 155 (300)
T cd00897 77 -VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLR 155 (300)
T ss_pred -CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHH
Confidence 111222111 0124455554332 2333433446789999999975332344
Q ss_pred HHHHHHhcCCceEEEEEecCccccc-ccceEEE-cCCCCcEEEEecCCCC--------ccccceeeeEEEEcHHHHHHhh
Q 015259 126 MLDAHRNYGGMGTILVIKVSAESAS-QFGELVA-DPDTNELLHYTEKPET--------FVSDLINCGVYVFTPDIFNAIQ 195 (410)
Q Consensus 126 ~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~~-d~~~~~v~~i~ekp~~--------~~~~l~~~Giy~~~~~~~~~l~ 195 (410)
++-.+..+++++.+-+.+. ..+. .-|.+.. + ..-+|+++.+-|.+ ....+.+++.++|+-+.++.+.
T Consensus 156 ~lg~~~~~~~~~~~evv~K--t~~dek~G~l~~~~-g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~~ 232 (300)
T cd00897 156 ILNHMVDNKAEYIMEVTDK--TRADVKGGTLIQYE-GKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRVV 232 (300)
T ss_pred HHHHHHhcCCceEEEEeec--CCCCCcccEEEEEC-CEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHHH
Confidence 7777777888877655543 2232 3444443 3 23357777766542 1345678888899988776543
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.2e-05 Score=65.40 Aligned_cols=110 Identities=22% Similarity=0.259 Sum_probs=71.7
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch--HHHHHHHHhhcccCCcc
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE--REFALYVSSISNELRIP 79 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~--~~i~~~~~~~~~~~~~~ 79 (410)
++.+||-|-- .++||.. |.|+|+++.|||+++|+.+.+ ++|.++..+ +.+.++..+ .|
T Consensus 3 ~I~~IiQARm--gStRLpg------KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~----~G-- 68 (241)
T COG1861 3 MILVIIQARM--GSTRLPG------KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS----HG-- 68 (241)
T ss_pred cEEEEeeecc--cCccCCc------chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH----cC--
Confidence 3556666665 5677765 999999999999999999997 777766543 446665543 22
Q ss_pred EEEeeCCCCCCcHHH-HHHhHHHhcccCCCcEEEEcCCcccCC-C-hHHHHHHHHhcCCc
Q 015259 80 VRYLREDKPHGSAGA-LYNFRDLIMEDNPSHIFLLNCDVCCSF-P-LPEMLDAHRNYGGM 136 (410)
Q Consensus 80 i~~i~~~~~~g~~~~-l~~~~~~l~~~~~~~~lvl~~D~i~~~-~-l~~~l~~~~~~~~~ 136 (410)
+.+.. |+.+- |......++....+.++=+.||.++-. . +..+++.|.+++++
T Consensus 69 ~~vfr-----Gs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD 123 (241)
T COG1861 69 FYVFR-----GSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD 123 (241)
T ss_pred eeEec-----CCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 33322 34433 333333333322467778899998633 3 67888888877765
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.5e-05 Score=72.26 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=53.9
Q ss_pred CcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC---------cEEEEecCCCC-----
Q 015259 108 SHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN---------ELLHYTEKPET----- 173 (410)
Q Consensus 108 ~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~---------~v~~i~ekp~~----- 173 (410)
.-++|..+|.++...-...+. .. +..++++..+.+.+-.+..|+...| .++ .+.++..||..
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~-~~--~~g~~~la~p~~~~~at~HGVfv~~-~~~~~~~~~~~~~v~~~L~KpS~eem~~ 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLID-WD--EPGVTALAHPSSLEYATNHGVFVLD-RQGPDEEDLEYREVKDFLQKPSEEEMRA 129 (414)
T ss_pred cceEEEecccccccCccccCC-CC--CCCEEEEEeeCCHHHhcCCeEEEeC-CCCCccccchhhhHHHhhcCCCHHHHHh
Confidence 458999999443211111121 21 2566666666655567778998888 455 68888888741
Q ss_pred ------ccccceeeeEEEEcHHHHHHhhh
Q 015259 174 ------FVSDLINCGVYVFTPDIFNAIQG 196 (410)
Q Consensus 174 ------~~~~l~~~Giy~~~~~~~~~l~~ 196 (410)
...-+.++|++.|+.++.+.|-.
T Consensus 130 ~~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 130 SGAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred CCcccCCCcccccccceeccHHHHHHHHH
Confidence 22445689999999988776643
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.2e-05 Score=65.76 Aligned_cols=35 Identities=11% Similarity=0.314 Sum_probs=23.2
Q ss_pred eEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||.++.|-.|++| ++++|++|++|..|||++..
T Consensus 207 vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~ 242 (269)
T KOG4750|consen 207 VLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTL 242 (269)
T ss_pred eEEccccEEeCCeeECCCcEEeccceEEeccCCCce
Confidence 444444444444444 68888999999999988643
|
|
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00037 Score=73.91 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=79.7
Q ss_pred cEEEEcCCcccC--CChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC-CcEEEEecCCC--------Ccccc
Q 015259 109 HIFLLNCDVCCS--FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT-NELLHYTEKPE--------TFVSD 177 (410)
Q Consensus 109 ~~lvl~~D~i~~--~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~-~~v~~i~ekp~--------~~~~~ 177 (410)
.++|..||.+.. ..+.+ -..++++.+....+.+-.+..|++..+.++ +++..+..||. ....-
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~ 227 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLF 227 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeE
Confidence 699999998742 22222 123455555555544667788998887321 57888888884 23456
Q ss_pred ceeeeEEEEcHHHHHHhhhcc-cccccchhhhccchhHhhhhhccCCCCCeeeeccchhcccc----------CCCceeE
Q 015259 178 LINCGVYVFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA----------GKKQLYT 246 (410)
Q Consensus 178 l~~~Giy~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~----------~~~~i~~ 246 (410)
+.|+|+|+|+..+++.|.... .... .. ..++++-.|++..|- ++.++..
T Consensus 228 l~D~g~~~~~~~a~~~L~~~~~~~~~--~~------------------~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i 287 (974)
T PRK13412 228 LMDIGIWLLSDRAVELLMKRSGKEDG--GK------------------LKYYDLYSDFGLALGTHPRIGDDELNALSVAI 287 (974)
T ss_pred EEeeeEEEEChHHHHHHHHhhhcccC--Cc------------------ceeeehHHHHHHhcCCCCCcchhhhcccceEE
Confidence 789999999998887666431 1100 01 123333344444332 1234455
Q ss_pred Eecc-ceeeecCCccchhhhhH
Q 015259 247 YETM-DFWEQIKTPGMSLKCSG 267 (410)
Q Consensus 247 ~~~~-g~~~~i~t~~~~~~an~ 267 (410)
.+.. +.|+-+||-.+|+....
T Consensus 288 ~~L~~~~F~H~GTs~E~l~~~~ 309 (974)
T PRK13412 288 LPLPGGEFYHYGTSRELISSTL 309 (974)
T ss_pred EEcCCceeEEecCcHHHhcCch
Confidence 5543 57888999988886443
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00016 Score=62.53 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=79.9
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCC
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
...+++.||+++.+. -.++|+...+|+++.|.+.++..++.|+..|.+. +.+..+++.||.++.|.+.
T Consensus 18 vv~gdViIG~nS~l~-------~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gk---- 86 (277)
T COG4801 18 VVKGDVIIGKNSMLK-------YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGK---- 86 (277)
T ss_pred EEeccEEEcccceee-------eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeee----
Confidence 344566666666664 4478888888888999888889999999999998 8899999999999999886
Q ss_pred cceeeeEECCCCEECCCcEEcceEEcCCcEEcccC
Q 015259 370 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 404 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~~ 404 (410)
.++..+-.||+++.|++..+..|-++-.+.
T Consensus 87 -----l~v~gdLdig~dV~Ieggfva~g~Ivirnp 116 (277)
T COG4801 87 -----LTVIGDLDIGADVIIEGGFVAKGWIVIRNP 116 (277)
T ss_pred -----EEEecccccccceEEecCeeecceEEEcCC
Confidence 777778899999999998888887775543
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.2e-05 Score=47.48 Aligned_cols=32 Identities=38% Similarity=0.523 Sum_probs=13.6
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEE
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRL 328 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i 328 (410)
.|++++.|++++.|.+++.||++|.|++++.|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 34444444444444444444444444444443
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00019 Score=62.09 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=58.3
Q ss_pred cEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceE
Q 015259 314 VSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSI 393 (410)
Q Consensus 314 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~ 393 (410)
.++...+.||+++.+.-.++++...+|+++.|.+.+++.+++|+.+|.+.++ ++.+.++.||+++.+++-.
T Consensus 17 ivv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gN---------V~ve~dayiGE~~sI~gkl 87 (277)
T COG4801 17 IVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGN---------VIVENDAYIGEFSSIKGKL 87 (277)
T ss_pred EEEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeecc---------EEEcCceEEeccceeeeeE
Confidence 3444455566666666678899999999999999999999999999999998 8889999999999886544
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.61 E-value=4.8e-05 Score=46.72 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=16.2
Q ss_pred eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 348 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 348 ~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
++|++++.|++++.|.++ +.||+++.|+++++|
T Consensus 2 ~~Ig~~~~i~~~~~i~~~---------~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGG---------VVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEEETT---------EEE-TTEEEETTEEE
T ss_pred CEEcCCCEECCCcEecCC---------CEECCCCEEcCCCEE
Confidence 344455555555554444 555555555555544
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=9.2e-05 Score=44.63 Aligned_cols=28 Identities=39% Similarity=0.417 Sum_probs=8.9
Q ss_pred ECCCcEECCCCEEeeeEECCCCEECCCCE
Q 015259 316 ISANARIGAGVRLISCIILDGVEIMENAV 344 (410)
Q Consensus 316 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~ 344 (410)
||++|.||+++.| ...|+++|.|+++++
T Consensus 4 IG~~~~ig~~~~i-gi~igd~~~i~~g~~ 31 (34)
T PF14602_consen 4 IGDNCFIGANSTI-GITIGDGVIIGAGVV 31 (34)
T ss_dssp E-TTEEE-TT-EE-TSEE-TTEEE-TTEE
T ss_pred ECCCEEECccccc-CCEEcCCCEECCCCE
Confidence 3444444444333 233344444444433
|
... |
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00038 Score=60.07 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=57.1
Q ss_pred CCccccccCC--ccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe-eCCCCCCcHHHHHHhHHHhc
Q 015259 31 IPKPLFPLGG--QPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL-REDKPHGSAGALYNFRDLIM 103 (410)
Q Consensus 31 ~pK~llpi~g--~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i-~~~~~~g~~~~l~~~~~~l~ 103 (410)
.+|+|++++| +|||+|+++.+.. ++|++.... .+ ...+ +.++ ......|+..++..+.+...
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~~~~~iivv~~~~~-~~--------~~~~--~~~i~d~~~g~gpl~~~~~gl~~~~ 71 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQRCAPVFVMAAPGQ-PL--------PELP--APVLRDELRGLGPLPATGRGLRAAA 71 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhhcCCEEEEECCCCc-cc--------ccCC--CCEeccCCCCCCcHHHHHHHHHHHH
Confidence 3899999999 9999999999875 666665332 11 1112 2333 23445677777765555432
Q ss_pred ccCCCcEEEEcCCccc-CCC-hHHHHHHH
Q 015259 104 EDNPSHIFLLNCDVCC-SFP-LPEMLDAH 130 (410)
Q Consensus 104 ~~~~~~~lvl~~D~i~-~~~-l~~~l~~~ 130 (410)
....+.++++.||+++ ..+ +..+++.+
T Consensus 72 ~~~~~~~lv~~~DmP~i~~~~i~~L~~~~ 100 (178)
T PRK00576 72 EAGARLAFVCAVDMPYLTVELIDDLARPA 100 (178)
T ss_pred hcCCCEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 1124789999999995 333 66666654
|
|
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.007 Score=59.10 Aligned_cols=182 Identities=18% Similarity=0.243 Sum_probs=106.0
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCC-ccchhhhHhhccc-----------EEEecccchHHHHHHHHhhcc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGG-QPMVHHPISACKR-----------IYLVGFYEEREFALYVSSISN 74 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g-~pli~~~l~~l~~-----------i~vv~~~~~~~i~~~~~~~~~ 74 (410)
.++.+|+|||| .||||+- ..||.++|+.. +++++..++.+.. ++......++...++++++ .
T Consensus 55 ~kvavl~LaGG--lGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~ky-f 128 (420)
T PF01704_consen 55 GKVAVLKLAGG--LGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKY-F 128 (420)
T ss_dssp TCEEEEEEEES--BSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHG-C
T ss_pred CCEEEEEEcCc--ccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHh-c
Confidence 47889999999 9999987 88999999954 4788877777664 3344445567788888873 2
Q ss_pred cCCccEEEeeC-----------------C------C---CCCcHHHHHH-----hHHHhcccCCCcEEEEcCCcccCCCh
Q 015259 75 ELRIPVRYLRE-----------------D------K---PHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCCSFPL 123 (410)
Q Consensus 75 ~~~~~i~~i~~-----------------~------~---~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~i~~~~l 123 (410)
..+.++.+..| . . +.|.|+-... .++.+.+..-+++.+.+.|.+...-=
T Consensus 129 g~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~D 208 (420)
T PF01704_consen 129 GLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVD 208 (420)
T ss_dssp GSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-
T ss_pred CCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccC
Confidence 22223322110 0 0 2366653322 23344344458899999999654333
Q ss_pred HHHHHHHHhcCCceEEEEEecCccccc-ccceEEEcCCCCcEEEEecCCCC--------ccccceeeeEEEEcHHHHHHh
Q 015259 124 PEMLDAHRNYGGMGTILVIKVSAESAS-QFGELVADPDTNELLHYTEKPET--------FVSDLINCGVYVFTPDIFNAI 194 (410)
Q Consensus 124 ~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~~d~~~~~v~~i~ekp~~--------~~~~l~~~Giy~~~~~~~~~l 194 (410)
..++-.+.++++++.+-+.+. ..+. .-|++......-+++.+.+-|.. ....+.+++--+|+-..++.+
T Consensus 209 p~~lG~~~~~~~~~~~evv~K--t~~dek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~ 286 (420)
T PF01704_consen 209 PVFLGYMIEKNADFGMEVVPK--TSPDEKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRL 286 (420)
T ss_dssp HHHHHHHHHTT-SEEEEEEE---CSTTTSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHH
T ss_pred HHHHHHHHhccchhheeeeec--CCCCCceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHH
Confidence 457777777788877666654 2222 23444432022245555554421 234556788778898887655
Q ss_pred hh
Q 015259 195 QG 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 287 ~~ 288 (420)
T PF01704_consen 287 LE 288 (420)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00045 Score=41.59 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=12.7
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEE
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRL 328 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i 328 (410)
+.||+++.|++++.| ++.||++|.|++++.|
T Consensus 2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc--CCEEcCCCEECCCCEE
Confidence 344455555554444 2555555555555444
|
... |
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0096 Score=57.70 Aligned_cols=156 Identities=22% Similarity=0.323 Sum_probs=95.6
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccC-CccchhhhHhhccc----------EEEecccchHHHHHHHHhhccc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR----------IYLVGFYEEREFALYVSSISNE 75 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~-g~pli~~~l~~l~~----------i~vv~~~~~~~i~~~~~~~~~~ 75 (410)
.++.+|+|||| .|+||+- ..||.+++|. |+++++.+.+.++. .++-.+...+.-..++... ..
T Consensus 104 ~klAvl~LaGG--qGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~-~Y 177 (472)
T COG4284 104 GKLAVLKLAGG--QGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSN-DY 177 (472)
T ss_pred CceEEEEecCC--ccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhh-hh
Confidence 46889999999 9999998 7899999999 88999999888775 3344444443334444331 11
Q ss_pred CCc---cEEEeeC-----------------------CCCCCcHH---HHHH--hHHHhcccCCCcEEEEcCCccc-CCCh
Q 015259 76 LRI---PVRYLRE-----------------------DKPHGSAG---ALYN--FRDLIMEDNPSHIFLLNCDVCC-SFPL 123 (410)
Q Consensus 76 ~~~---~i~~i~~-----------------------~~~~g~~~---~l~~--~~~~l~~~~~~~~lvl~~D~i~-~~~l 123 (410)
++. +|.+..| ..+.|.|+ +|.. ..+.+.++.-+.+.|.+.|.+. ..|+
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 121 1221110 11345544 3332 2333434556788899999963 4454
Q ss_pred HHHHHHHHhcCCceEEEEEecCccccc-ccceEE-EcCCCCcEEEEecCCC
Q 015259 124 PEMLDAHRNYGGMGTILVIKVSAESAS-QFGELV-ADPDTNELLHYTEKPE 172 (410)
Q Consensus 124 ~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~-~d~~~~~v~~i~ekp~ 172 (410)
. ++.++...+.+.++-++.. ..+. .-|++. .+ ...+|+.+.+-|.
T Consensus 258 ~-~lg~~~~~~~e~~~e~t~K--t~a~ekvG~Lv~~~-g~~rllEysev~~ 304 (472)
T COG4284 258 K-FLGFMAETNYEYLMETTDK--TKADEKVGILVTYD-GKLRLLEYSEVPN 304 (472)
T ss_pred H-HHHHHHhcCcceeEEEeec--ccccccceEEEEeC-CceEEEEEecCCh
Confidence 3 6677777788877666553 2222 245544 55 4568888887664
|
|
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.015 Score=57.55 Aligned_cols=181 Identities=18% Similarity=0.308 Sum_probs=110.2
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccC---CccchhhhHhhccc--------------------EEEecc-cch
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR--------------------IYLVGF-YEE 62 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~---g~pli~~~l~~l~~--------------------i~vv~~-~~~ 62 (410)
.++.+|+|||| .||||+- ..||.+++|+ ++++++...+.+.. .+|-++ ..+
T Consensus 115 gkvavvlLAGG--qGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 115 GKLAVVLLSGG--QGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred CCEEEEEeCCC--cccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 46778999999 9999987 8899999885 78999998887621 244444 445
Q ss_pred HHHHHHHHhhcccCCc---cEEEeeC---------------------CCCCCcHHHHHH-----hHHHhcccCCCcEEEE
Q 015259 63 REFALYVSSISNELRI---PVRYLRE---------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLL 113 (410)
Q Consensus 63 ~~i~~~~~~~~~~~~~---~i~~i~~---------------------~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl 113 (410)
+...+++++. ..+|+ .|.+..| ..+.|.++-... .++.+.+..-+++.+.
T Consensus 190 ~~T~~ff~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~ 268 (493)
T PLN02435 190 EATRKFFESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCY 268 (493)
T ss_pred HHHHHHHHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEE
Confidence 6678888763 33443 3443322 135577664442 2334433445788888
Q ss_pred cCCccc-CCChHHHHHHHHhcCCceEEEEEecCccccc-ccceEEEcCCCC--cEEEEecCCCC-----------ccccc
Q 015259 114 NCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESAS-QFGELVADPDTN--ELLHYTEKPET-----------FVSDL 178 (410)
Q Consensus 114 ~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~~d~~~~--~v~~i~ekp~~-----------~~~~l 178 (410)
..|.+. ..--..++-.+...+.++.+-+.+. ..+. .-|.+.....++ .|..+.|-+.. .....
T Consensus 269 ~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K--~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~ 346 (493)
T PLN02435 269 GVDNALVRVADPTFLGYFIDKGVASAAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCW 346 (493)
T ss_pred ecccccccccCHHHHHHHHhcCCceEEEeeec--CCCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccch
Confidence 889863 3334556777777777776655433 2222 236554311233 36666554321 12344
Q ss_pred eeeeEEEEcHHHHHHhh
Q 015259 179 INCGVYVFTPDIFNAIQ 195 (410)
Q Consensus 179 ~~~Giy~~~~~~~~~l~ 195 (410)
.+.+.++|+-+.++.+.
T Consensus 347 gnI~~h~fs~~fL~~~~ 363 (493)
T PLN02435 347 SNVCLHMFTLDFLNQVA 363 (493)
T ss_pred hhHHHhhccHHHHHHHH
Confidence 56677888888877664
|
|
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.035 Score=51.92 Aligned_cols=139 Identities=15% Similarity=0.169 Sum_probs=81.6
Q ss_pred EEEEEecCCCCCCccccCCCCCCcccccc---CCccchhhhHhhccc--------------EEEecc-cchHHHHHHHHh
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR--------------IYLVGF-YEEREFALYVSS 71 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi---~g~pli~~~l~~l~~--------------i~vv~~-~~~~~i~~~~~~ 71 (410)
.+|+|||| .|+||+- +.||.++|+ .|+++++..++.+.. .+|-++ ..++...+++++
T Consensus 2 a~vllaGG--~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~ 76 (315)
T cd06424 2 VFVLVAGG--LGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEE 76 (315)
T ss_pred EEEEecCC--CccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHH
Confidence 47999999 9999987 889999999 588999999888743 344444 445677888876
Q ss_pred hcccCCc---cEEEeeC------------------------CCCCCcHHHHHH-----hHHHhcccCCCcEEEEcCCccc
Q 015259 72 ISNELRI---PVRYLRE------------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCC 119 (410)
Q Consensus 72 ~~~~~~~---~i~~i~~------------------------~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~i~ 119 (410)
. ..+|. .|.+..| ..+.|.++-... .++.+.+..-+++.+..-|.+.
T Consensus 77 n-~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L 155 (315)
T cd06424 77 N-NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNAL 155 (315)
T ss_pred C-CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhh
Confidence 3 22332 2222110 124566654432 2334433445677777777664
Q ss_pred -CCChHHHHHHHHhcCCceEEEEEecCcccccccceEE
Q 015259 120 -SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELV 156 (410)
Q Consensus 120 -~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 156 (410)
..-..-++-.+...+.++...+.+. .....-|++.
T Consensus 156 ~~~adP~fiG~~~~~~~d~~~k~v~~--~~~E~vG~~~ 191 (315)
T cd06424 156 AFKAIPAVLGVSATKSLDMNSLTVPR--KPKEAIGALC 191 (315)
T ss_pred hhccChhhEEEEecCCCceEeEEEeC--CCCCceeeEE
Confidence 2223344444555566665544432 2223456554
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.14 Score=52.48 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=84.5
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCcccccc---CCccchhhhHhhccc-----------------EEEecc-cchHHH
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR-----------------IYLVGF-YEEREF 65 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi---~g~pli~~~l~~l~~-----------------i~vv~~-~~~~~i 65 (410)
.++.+|+|||| .|+||+- .-||.++|+ .|+++++..++.+.. .+|-++ ..++..
T Consensus 127 ~kvavllLaGG--lGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T 201 (615)
T PLN02830 127 GNAAFVLVAGG--LGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHART 201 (615)
T ss_pred CcEEEEEecCC--cccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHH
Confidence 47889999999 9999986 779999997 488999999888632 344444 345667
Q ss_pred HHHHHhhcccCCc---cEEEeeC------------------------CCCCCcHHHHHH-----hHHHhcccCCCcEEEE
Q 015259 66 ALYVSSISNELRI---PVRYLRE------------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLL 113 (410)
Q Consensus 66 ~~~~~~~~~~~~~---~i~~i~~------------------------~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl 113 (410)
.+++++. ..+|. .|.+..| ..+.|.++-... .++.+.+..-+++.+.
T Consensus 202 ~~~~~~n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~ 280 (615)
T PLN02830 202 LKLLERN-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFF 280 (615)
T ss_pred HHHHHHC-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEE
Confidence 7888763 23332 2322111 124455543322 2334444445788888
Q ss_pred cCCccc-CCChHHHHHHHHhcCCceEEEEEec
Q 015259 114 NCDVCC-SFPLPEMLDAHRNYGGMGTILVIKV 144 (410)
Q Consensus 114 ~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~ 144 (410)
..|.+. ......++-.+..++.++.+.+.+.
T Consensus 281 ~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K 312 (615)
T PLN02830 281 QDTNGLVFKAIPAALGVSATKGFDMNSLAVPR 312 (615)
T ss_pred eccchhhhcccHHHhHHHHhcCCceEEEEEEC
Confidence 888853 2223777888887888877766543
|
|
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.6 Score=41.89 Aligned_cols=131 Identities=17% Similarity=0.247 Sum_probs=77.3
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchh---hhHhhccc--------EEEecccchHHHHHHHHhhc
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVH---HPISACKR--------IYLVGFYEEREFALYVSSIS 73 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~---~~l~~l~~--------i~vv~~~~~~~i~~~~~~~~ 73 (410)
..++.++=|-|| .|+-|+= .-||+++++-+- ++++ ++++.|.+ ++......++.-..++++..
T Consensus 101 L~KLavlKLNGG--lGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~ 175 (498)
T KOG2638|consen 101 LNKLAVLKLNGG--LGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA 175 (498)
T ss_pred hhheEEEEecCC--cCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc
Confidence 456778889999 9999987 789999999754 6555 45555555 44445555555666666531
Q ss_pred ccCCccEEE--------------ee-----------CCCCCCcHH---HHHH--hHHHhcccCCCcEEEEcCCccc-CCC
Q 015259 74 NELRIPVRY--------------LR-----------EDKPHGSAG---ALYN--FRDLIMEDNPSHIFLLNCDVCC-SFP 122 (410)
Q Consensus 74 ~~~~~~i~~--------------i~-----------~~~~~g~~~---~l~~--~~~~l~~~~~~~~lvl~~D~i~-~~~ 122 (410)
. ...++.. ++ ..-+.|.++ +++. .++.+-.+..+.++|.+.|.+. ..|
T Consensus 176 ~-~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvD 254 (498)
T KOG2638|consen 176 G-SKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVD 254 (498)
T ss_pred C-CceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceee
Confidence 1 1111111 00 011334443 3332 2333333556889999999995 456
Q ss_pred hHHHHHHHHhcCCceEEEEEe
Q 015259 123 LPEMLDAHRNYGGMGTILVIK 143 (410)
Q Consensus 123 l~~~l~~~~~~~~~~~l~~~~ 143 (410)
|. +|+...+.+....|-++.
T Consensus 255 L~-ILn~~i~~~~ey~MEvTd 274 (498)
T KOG2638|consen 255 LN-ILNHVINNNIEYLMEVTD 274 (498)
T ss_pred HH-HHHHHhcCCCceEEEecc
Confidence 54 566666666666666554
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.039 Score=54.13 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=32.5
Q ss_pred CcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEcc
Q 015259 319 NARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 319 ~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (410)
.+.+.+++.|.+|+|..++.++++++|++|.++.++.||.+|.|.+
T Consensus 273 ~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisG 318 (414)
T PF07959_consen 273 PSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISG 318 (414)
T ss_pred ccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEEC
Confidence 3445566677777777777777777777777777777777777776
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.2 Score=41.48 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=66.2
Q ss_pred cccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCC
Q 015259 36 FPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNP 107 (410)
Q Consensus 36 lpi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~ 107 (410)
+|.-|. ..+..+|+.+.+ |+|+-....+...+.+++... ...+++++..++..|.+.++..+.+... .
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~---~ 79 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAK---G 79 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH-----S
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-cccccccccccccccccccccccccccc---e
Confidence 444555 566777776655 666644333334444554322 3557888887777788888888888876 4
Q ss_pred CcEEEEcCCcccCCC-hHHHHHHHHhcCCceEEEEE
Q 015259 108 SHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVI 142 (410)
Q Consensus 108 ~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~~l~~~ 142 (410)
+.++++..|.....+ +..+++...+.+.++.+...
T Consensus 80 ~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 80 EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 688999999987666 88888888876666544433
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=92.77 E-value=1 Score=36.15 Aligned_cols=86 Identities=12% Similarity=0.039 Sum_probs=55.0
Q ss_pred ccchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEE
Q 015259 41 QPMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLL 113 (410)
Q Consensus 41 ~pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl 113 (410)
.+++.++++++.+ ++++.....+...+.+.+.... ...+.........|.+.++..+.+... .+.++++
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~---~d~v~~~ 84 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAAR---GEYILFL 84 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhc---CCEEEEE
Confidence 3788888888765 5555544444445555443211 123455555667788888888888774 4789999
Q ss_pred cCCcccCCC-hHHHHHHH
Q 015259 114 NCDVCCSFP-LPEMLDAH 130 (410)
Q Consensus 114 ~~D~i~~~~-l~~~l~~~ 130 (410)
.+|.++..+ +..++..+
T Consensus 85 d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 85 DADDLLLPDWLERLVAEL 102 (156)
T ss_pred CCCCccCccHHHHHHHHH
Confidence 999988665 55553443
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.34 Score=42.18 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=53.5
Q ss_pred CccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEc
Q 015259 40 GQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114 (410)
Q Consensus 40 g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~ 114 (410)
-+|||+|+++.+.. +++++.. +.+..+... + .+.++.+.. .|.+.++..+.+.+... .+.++++.
T Consensus 29 ~~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~--~v~~i~~~~-~G~~~si~~al~~~~~~-~~~vlv~~ 98 (195)
T TIGR03552 29 ALAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN----L--GAPVLRDPG-PGLNNALNAALAEAREP-GGAVLILM 98 (195)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----c--CCEEEecCC-CCHHHHHHHHHHHhhcc-CCeEEEEe
Confidence 35899999998876 5666553 233333322 2 244554433 38899999988877421 24799999
Q ss_pred CCccc--CCChHHHHHHHH
Q 015259 115 CDVCC--SFPLPEMLDAHR 131 (410)
Q Consensus 115 ~D~i~--~~~l~~~l~~~~ 131 (410)
||+++ ...+..+++...
T Consensus 99 ~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 99 ADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCCHHHHHHHHHhcc
Confidence 99985 345777777553
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
Probab=90.94 E-value=2 Score=37.05 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=58.2
Q ss_pred ccccCCcc---chhhhHhhccc-------EEEecccc-hHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhc
Q 015259 35 LFPLGGQP---MVHHPISACKR-------IYLVGFYE-EREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103 (410)
Q Consensus 35 llpi~g~p---li~~~l~~l~~-------i~vv~~~~-~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~ 103 (410)
++|+-|.. .|..+|+.+.+ ++|+-... .+...+.+.....+.+ +.++......|.+.+...+.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcC
Confidence 35565553 67788888765 55543322 3344444444333333 666665566788888887777654
Q ss_pred ccCCCcEEEEcCCcccCCC-hHHHHHHHHh
Q 015259 104 EDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 104 ~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~ 132 (410)
.+.++++.+|.+...+ +..+++...+
T Consensus 81 ---gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 81 ---YDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred ---CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 4778899999886544 7777776644
|
AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=89.69 E-value=2.8 Score=34.49 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=54.7
Q ss_pred cccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCC
Q 015259 36 FPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNP 107 (410)
Q Consensus 36 lpi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~ 107 (410)
+|.-|. ..|..+|+.+.+ ++|+-....+...+.+..........+.++......|.+.++..+.+... .
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~---~ 79 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK---G 79 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcC---C
Confidence 344444 456666666554 55553333333333333322221223455555667788888888877774 4
Q ss_pred CcEEEEcCCcccCCC-hHHHHHHHHh
Q 015259 108 SHIFLLNCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 108 ~~~lvl~~D~i~~~~-l~~~l~~~~~ 132 (410)
+.++++.+|.....+ +..++..+.+
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhcc
Confidence 788999999887555 7777455544
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=89.55 E-value=3.4 Score=34.02 Aligned_cols=90 Identities=16% Similarity=0.057 Sum_probs=57.0
Q ss_pred ccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCC
Q 015259 37 PLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (410)
Q Consensus 37 pi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~ 108 (410)
|.-|+ .++..+++.+.+ ++|+-....+...+.+.+.. ..+.++......|.+.++..+.+... .+
T Consensus 4 ~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~----~~~~~~~~~~~~g~~~a~n~~~~~~~---~~ 76 (166)
T cd04186 4 VNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF----PEVRLIRNGENLGFGAGNNQGIREAK---GD 76 (166)
T ss_pred EecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC----CCeEEEecCCCcChHHHhhHHHhhCC---CC
Confidence 34444 567777777754 55554433334444444321 15666666677788888888888774 47
Q ss_pred cEEEEcCCcccCCC-hHHHHHHHHhc
Q 015259 109 HIFLLNCDVCCSFP-LPEMLDAHRNY 133 (410)
Q Consensus 109 ~~lvl~~D~i~~~~-l~~~l~~~~~~ 133 (410)
.++++..|.....+ +..+++...+.
T Consensus 77 ~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 77 YVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred EEEEECCCcEECccHHHHHHHHHHhC
Confidence 78899999887555 77777755443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.37 E-value=2.5 Score=36.13 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=61.2
Q ss_pred CccchhhhHhhccc-------EEEecccch---HHHHHHHHhhcccCCc-cEEEeeCCCCCCcHHHHHHhHHHhcccCCC
Q 015259 40 GQPMVHHPISACKR-------IYLVGFYEE---REFALYVSSISNELRI-PVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (410)
Q Consensus 40 g~pli~~~l~~l~~-------i~vv~~~~~---~~i~~~~~~~~~~~~~-~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~ 108 (410)
|.|++-|.+..... ++++-...+ ....+.+++ -++. +|...+.....|.+.+...+..+.. .+
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k---~yg~d~i~l~pR~~klGLgtAy~hgl~~a~---g~ 90 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQK---IYGEDNILLKPRTKKLGLGTAYIHGLKHAT---GD 90 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHH---HhCCCcEEEEeccCcccchHHHHhhhhhcc---CC
Confidence 45677777776554 666622222 222233332 2333 6777777788888888988888775 35
Q ss_pred cEEEEcCCccc-CCChHHHHHHHHhcCCceEEEE
Q 015259 109 HIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILV 141 (410)
Q Consensus 109 ~~lvl~~D~i~-~~~l~~~l~~~~~~~~~~~l~~ 141 (410)
.++++.+|+-. +.-+.++++.+.+.+.++++.+
T Consensus 91 fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GT 124 (238)
T KOG2978|consen 91 FIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGT 124 (238)
T ss_pred eEEEEeCccCCCchhHHHHHHHhhccCcceeeee
Confidence 56788999874 4458899888777666755543
|
|
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
Probab=89.23 E-value=4 Score=36.73 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=49.7
Q ss_pred EEEecccchHHHHHHHHhhcccCC-ccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHH
Q 015259 54 IYLVGFYEEREFALYVSSISNELR-IPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (410)
Q Consensus 54 i~vv~~~~~~~i~~~~~~~~~~~~-~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~ 131 (410)
|+|+-....+.-.+.+++....++ ..+.++......|.+.++..+.+... .+.++++.+|...+.+ +..+++...
T Consensus 43 iivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~---g~~i~~lD~D~~~~~~~l~~l~~~~~ 119 (243)
T PLN02726 43 IIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHAS---GDFVVIMDADLSHHPKYLPSFIKKQR 119 (243)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcC---CCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 666633222222333333222232 24566655666788888888777654 4788899999887544 778887765
Q ss_pred hcCCceEE
Q 015259 132 NYGGMGTI 139 (410)
Q Consensus 132 ~~~~~~~l 139 (410)
+.+.+++.
T Consensus 120 ~~~~~~v~ 127 (243)
T PLN02726 120 ETGADIVT 127 (243)
T ss_pred hcCCcEEE
Confidence 55555443
|
|
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
Probab=88.62 E-value=2.9 Score=36.52 Aligned_cols=84 Identities=19% Similarity=0.123 Sum_probs=51.6
Q ss_pred EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHh
Q 015259 54 IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 54 i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~ 132 (410)
++|+-....+...+.+++...+++..+.++......|.++++..+.+... .+.++++.+|.....+ +..+++...+
T Consensus 33 iivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~---gd~i~~ld~D~~~~~~~l~~l~~~~~~ 109 (211)
T cd04188 33 IIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR---GDYILFADADLATPFEELEKLEEALKT 109 (211)
T ss_pred EEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 56663333333333344332233333566666667788999988888775 4788899999887544 7888877555
Q ss_pred cCCceEEE
Q 015259 133 YGGMGTIL 140 (410)
Q Consensus 133 ~~~~~~l~ 140 (410)
.+.++++.
T Consensus 110 ~~~~~v~g 117 (211)
T cd04188 110 SGYDIAIG 117 (211)
T ss_pred cCCcEEEE
Confidence 55554443
|
UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. |
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
Probab=88.36 E-value=5.7 Score=35.65 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=60.2
Q ss_pred CCCCCc--cccccCCc-cchhhhHhhccc---------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHH
Q 015259 28 SLNIPK--PLFPLGGQ-PMVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGAL 95 (410)
Q Consensus 28 t~~~pK--~llpi~g~-pli~~~l~~l~~---------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l 95 (410)
....|+ -++|.-|. ..|...|+.+.+ ++|+-....+...+.+++.... .+.++......|-+.++
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~~~g~~~a~ 101 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPERRGKAAAL 101 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCCCCChHHHH
Confidence 344454 45666666 456666655433 4444333333344444443221 46666666667888888
Q ss_pred HHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHH
Q 015259 96 YNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (410)
Q Consensus 96 ~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~ 131 (410)
..+.+... .+.++++.+|.+...+ +..+++...
T Consensus 102 n~gi~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 102 NRALALAT---GEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred HHHHHHcC---CCEEEEEccccCcCHHHHHHHHHHhc
Confidence 88877775 4788999999987655 778877764
|
This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. |
| >cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=87.46 E-value=5 Score=35.94 Aligned_cols=59 Identities=8% Similarity=0.016 Sum_probs=40.1
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCceEEE
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTIL 140 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~~l~ 140 (410)
++..+......|-+.++..+.+... .+.++++.+|.....+ +..++..+.+.+.++.++
T Consensus 60 ~i~~~~~~~~~G~~~a~n~g~~~a~---gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 60 RVVVVPPSQPRTKPKACNYALAFAR---GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred eEEEecCCCCCchHHHHHHHHHhcC---CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 4445444455677888888887664 4788899999987655 778888776443444433
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot |
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
Probab=85.70 E-value=16 Score=33.48 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=55.7
Q ss_pred cchhhhHhhccc----EEEeccc--chHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcC
Q 015259 42 PMVHHPISACKR----IYLVGFY--EEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNC 115 (410)
Q Consensus 42 pli~~~l~~l~~----i~vv~~~--~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~ 115 (410)
..+...|+.+.+ |+||=.. ..+.+...+.+ ..++.++...+..|-++++..+.+...+...+.++++..
T Consensus 8 ~~l~~~l~sl~~q~~~iiVVDN~S~~~~~~~~~~~~-----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~ 82 (281)
T TIGR01556 8 EHLGELITSLPKQVDRIIAVDNSPHSDQPLKNARLR-----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQ 82 (281)
T ss_pred HHHHHHHHHHHhcCCEEEEEECcCCCcHhHHHHhcc-----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECC
Confidence 355566666664 6666332 22344443322 135778877778899999988887763333578999999
Q ss_pred CcccCCC-hHHHHHHHHhc
Q 015259 116 DVCCSFP-LPEMLDAHRNY 133 (410)
Q Consensus 116 D~i~~~~-l~~~l~~~~~~ 133 (410)
|.....+ +..+++...+.
T Consensus 83 D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 83 DSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9987655 67777765543
|
Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids. |
| >cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=85.32 E-value=5.3 Score=34.62 Aligned_cols=92 Identities=10% Similarity=0.028 Sum_probs=53.2
Q ss_pred ccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCC
Q 015259 37 PLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (410)
Q Consensus 37 pi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~ 108 (410)
|.-|. ..|...|+.+.+ ++|+-....+...+.++....+++..+.++......|.+.++..+....+ .+
T Consensus 5 p~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~---g~ 81 (214)
T cd04196 5 ATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD---GD 81 (214)
T ss_pred EecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC---CC
Confidence 33344 355666666543 55553322222233344333333334556666667788888877766554 47
Q ss_pred cEEEEcCCcccCCC-hHHHHHHHH
Q 015259 109 HIFLLNCDVCCSFP-LPEMLDAHR 131 (410)
Q Consensus 109 ~~lvl~~D~i~~~~-l~~~l~~~~ 131 (410)
.++++..|.....+ +..+++...
T Consensus 82 ~v~~ld~Dd~~~~~~l~~~~~~~~ 105 (214)
T cd04196 82 YVFFCDQDDIWLPDKLERLLKAFL 105 (214)
T ss_pred EEEEECCCcccChhHHHHHHHHHh
Confidence 88899999876544 788877633
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=85.22 E-value=5 Score=35.21 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=40.0
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCceE
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGT 138 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~~ 138 (410)
.+.++......|.+.++..+.+... .+.++++.+|.....+ +..+++.....+.+++
T Consensus 54 ~i~~~~~~~n~G~~~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 54 RVRLIVRPGKRGLGSAYIEGFKAAR---GDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred ceEEEecCCCCChHHHHHHHHHHcC---CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 3566666677788888888887765 3678899999876544 7777776555455543
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.79 E-value=1.9 Score=46.62 Aligned_cols=39 Identities=10% Similarity=0.090 Sum_probs=25.6
Q ss_pred CEEeeeEECCCCEECCC-CEEEeeEECCCCEECCCcEEcc
Q 015259 326 VRLISCIILDGVEIMEN-AVVTNAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 326 ~~i~~~~i~~~~~i~~~-~~i~~~~i~~~~~i~~~~~i~~ 364 (410)
+.|.||++..++.++++ +.|++|.|+.++.||.++.|.+
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisg 371 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITG 371 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEec
Confidence 44566666777777665 3366677777777777776666
|
|
| >PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins | Back alignment and domain information |
|---|
Probab=84.70 E-value=3.7 Score=31.44 Aligned_cols=53 Identities=28% Similarity=0.274 Sum_probs=24.1
Q ss_pred EECCCcEECCCcEECCCcEECCCCEEeeeEECC-CCEECCCCEEEeeEECCCCEEC
Q 015259 303 KIHPTAKIGPNVSISANARIGAGVRLISCIILD-GVEIMENAVVTNAIVGWKSSIG 357 (410)
Q Consensus 303 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~-~~~i~~~~~i~~~~i~~~~~i~ 357 (410)
.|++++.+.++......+.|. + .+...+--+ ...|+.++.+...+-.+.+.+.
T Consensus 4 ~I~~~~~i~G~i~~~~~v~i~-G-~v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i~ 57 (101)
T PF04519_consen 4 IIGKGTKIEGDISSDGDVRID-G-RVEGNIKAEGKVKIGGNGEVKGDIKADDVIIS 57 (101)
T ss_pred EECCCCEEEEEEEECcEEEEE-E-EEEEEEEEceEEEEcCCCEEEEEEEEeEEEEc
Confidence 444444444444444444442 1 133222222 4555556666544555555553
|
|
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=84.67 E-value=6.3 Score=34.00 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=52.3
Q ss_pred cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEc
Q 015259 42 PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114 (410)
Q Consensus 42 pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~ 114 (410)
..|..+|+.+.+ ++|+-....+...+.+++..... ++.++......|.+.++..+.+.......+.++++.
T Consensus 10 ~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~--~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld 87 (202)
T cd04185 10 DLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLD--NIVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMD 87 (202)
T ss_pred HHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCC--ceEEEECccccchhhHHHHHHHHHhccCCCEEEEeC
Confidence 456666666654 55553333334445555432222 256666666677777777766655322246788999
Q ss_pred CCcccCCC-hHHHHHHHH
Q 015259 115 CDVCCSFP-LPEMLDAHR 131 (410)
Q Consensus 115 ~D~i~~~~-l~~~l~~~~ 131 (410)
.|...+.+ +..+++...
T Consensus 88 ~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 88 DDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCCCcChHHHHHHHHHHh
Confidence 99987655 666666554
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PRK11204 N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.49 E-value=6.1 Score=38.88 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=59.6
Q ss_pred ccccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccC
Q 015259 35 LFPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDN 106 (410)
Q Consensus 35 llpi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~ 106 (410)
++|.-|. ..|..+++.+.+ ++|+.....+...+.+++...++ .++.++...+..|-++++..+.+...
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~-~~v~~i~~~~n~Gka~aln~g~~~a~--- 134 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQI-PRLRVIHLAENQGKANALNTGAAAAR--- 134 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CcEEEEEcCCCCCHHHHHHHHHHHcC---
Confidence 4555565 677777777654 55554333333333333322222 24667665566788888888877654
Q ss_pred CCcEEEEcCCcccCCC-hHHHHHHHHhc
Q 015259 107 PSHIFLLNCDVCCSFP-LPEMLDAHRNY 133 (410)
Q Consensus 107 ~~~~lvl~~D~i~~~~-l~~~l~~~~~~ 133 (410)
.+.++++.+|.+.+.+ +..+++.+++.
T Consensus 135 ~d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 135 SEYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 4788999999987666 78888776543
|
|
| >cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans | Back alignment and domain information |
|---|
Probab=84.30 E-value=7.7 Score=36.12 Aligned_cols=55 Identities=16% Similarity=0.078 Sum_probs=41.0
Q ss_pred ccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCC
Q 015259 78 IPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGG 135 (410)
Q Consensus 78 ~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~ 135 (410)
..++++..+...|-+.+.-.+.+... .+.++++++|.....+ |..+++...+...
T Consensus 58 ~~v~vi~~~~n~G~~~a~N~g~~~A~---gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 58 PKVKVLRLKKREGLIRARIAGARAAT---GDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHcc---CCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 45777776777788888877777664 4788999999987655 8888887765443
|
UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. |
| >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis | Back alignment and domain information |
|---|
Probab=84.30 E-value=8.5 Score=33.16 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=28.3
Q ss_pred cEEEeeCCCCCCc---HHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHH
Q 015259 79 PVRYLREDKPHGS---AGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAH 130 (410)
Q Consensus 79 ~i~~i~~~~~~g~---~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~ 130 (410)
++.++......|. +.++..+.+... .+.++++.+|...+.+ +..+++..
T Consensus 59 ~~~~~~~~~~~g~~~~~~~~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 59 DARLLIGGEKVGINPKVNNLIKGYEEAR---YDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred cEEEEecCCcCCCCHhHHHHHHHHHhCC---CCEEEEECCCceEChhHHHHHHHHh
Confidence 4555544333343 234444554443 4778899999887555 67776654
|
UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment. |
| >cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=84.03 E-value=8.4 Score=32.55 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=40.3
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCceEEE
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTIL 140 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~~l~ 140 (410)
++.++......|.+.++..+.+... .+.++++.+|.....+ +..+++. .+.+.++++.
T Consensus 56 ~i~~i~~~~n~G~~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g 114 (181)
T cd04187 56 RVKVIRLSRNFGQQAALLAGLDHAR---GDAVITMDADLQDPPELIPEMLAK-WEEGYDVVYG 114 (181)
T ss_pred CEEEEEecCCCCcHHHHHHHHHhcC---CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEE
Confidence 5666665667788888888877665 4788999999887554 7777776 3444554433
|
A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=83.91 E-value=7.7 Score=32.72 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=50.1
Q ss_pred EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHh
Q 015259 54 IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 54 i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~ 132 (410)
++|+-....+...+.++....++. .+.++...+..|.+.++..+.+... .+.++++.+|.....+ +..++....+
T Consensus 31 iivvd~~s~d~~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~ 106 (185)
T cd04179 31 IIVVDDGSTDGTAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAAR---GDIVVTMDADLQHPPEDIPKLLEKLLE 106 (185)
T ss_pred EEEEcCCCCCChHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 555533322233333433222222 3456666677788888888888775 3788999999876544 7778876455
Q ss_pred cCCceEEE
Q 015259 133 YGGMGTIL 140 (410)
Q Consensus 133 ~~~~~~l~ 140 (410)
.+.++++.
T Consensus 107 ~~~~~v~g 114 (185)
T cd04179 107 GGADVVIG 114 (185)
T ss_pred cCCcEEEE
Confidence 55554444
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
Probab=83.64 E-value=9.3 Score=36.25 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=40.6
Q ss_pred CccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC-CChHHHHHHHHhcCCceE
Q 015259 77 RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGGMGT 138 (410)
Q Consensus 77 ~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~-~~l~~~l~~~~~~~~~~~ 138 (410)
+.++..+......|.+.++..+.+... .+.++++.+|...+ ..+.++++... .+.+++
T Consensus 64 ~~~v~~i~~~~n~G~~~A~~~G~~~A~---gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 64 DSHIVAILLNRNYGQHSAIMAGFSHVT---GDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHhCC---CCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 345555544566788899988877664 47788999999865 45888888764 355644
|
|
| >cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
Probab=82.58 E-value=7.4 Score=34.53 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=53.5
Q ss_pred cccCCc-c-chhhhHhhccc-------EEEecccc-hHHHHHHHHhhcccCCccEEEeeCCCCCCc-HHHHHHhHHHhcc
Q 015259 36 FPLGGQ-P-MVHHPISACKR-------IYLVGFYE-EREFALYVSSISNELRIPVRYLREDKPHGS-AGALYNFRDLIME 104 (410)
Q Consensus 36 lpi~g~-p-li~~~l~~l~~-------i~vv~~~~-~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~-~~~l~~~~~~l~~ 104 (410)
+|.-|. | +|...|+.+.+ ++|+-... +....+.+++..++++.++.++......|- ++++..+.+....
T Consensus 4 ip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~ 83 (236)
T cd06435 4 VPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAP 83 (236)
T ss_pred EeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCC
Confidence 455555 2 57777777655 55553222 222222222221223445666654444563 7778777776531
Q ss_pred cCCCcEEEEcCCcccCCC-hHHHHHHHH
Q 015259 105 DNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (410)
Q Consensus 105 ~~~~~~lvl~~D~i~~~~-l~~~l~~~~ 131 (410)
..+.++++.+|.....+ +..++....
T Consensus 84 -~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 84 -DAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred -CCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 13678999999887655 788887664
|
NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response. |
| >PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A | Back alignment and domain information |
|---|
Probab=80.55 E-value=2.9 Score=36.92 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=47.9
Q ss_pred ccccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCc-cEEEeeCCCCCC---cHHHHHHhHHHh
Q 015259 35 LFPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRI-PVRYLREDKPHG---SAGALYNFRDLI 102 (410)
Q Consensus 35 llpi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~-~i~~i~~~~~~g---~~~~l~~~~~~l 102 (410)
++|.-|. +.+...|+.+.+ ++|+.....+...+.+++....++. .+.++......| .+.++..+.+..
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~ 85 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAA 85 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhc
Confidence 3455555 566777777665 5555432222222223322223332 567765544333 455666666655
Q ss_pred cccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCc
Q 015259 103 MEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGM 136 (410)
Q Consensus 103 ~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~ 136 (410)
. .+.++++..|.+.+.+ +..+++.+...+..
T Consensus 86 ~---~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~ 117 (228)
T PF13641_consen 86 R---GDYILFLDDDTVLDPDWLERLLAAFADPGVG 117 (228)
T ss_dssp -----SEEEEE-SSEEE-CHHHHHHHHHHHBSS--
T ss_pred C---CCEEEEECCCcEECHHHHHHHHHHHHhCCCC
Confidence 4 4788999999998655 77888777333333
|
|
| >COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=80.28 E-value=11 Score=31.15 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=34.4
Q ss_pred cEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcce
Q 015259 320 ARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 392 (410)
Q Consensus 320 ~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~ 392 (410)
+.|++..+|...+--+...|. +.+..+....+.+.|...+++.+ -+=++.-.|..|+++.+.
T Consensus 58 iiv~~~g~V~gei~a~~~iv~-G~v~Gni~~a~~Vei~~~g~v~G----------dI~~~~i~v~~Ga~f~G~ 119 (146)
T COG1664 58 IVVGESGRVEGEIEAEHLIVE-GKVEGNILAAERVELYPGGRVIG----------DITTKEITVEEGAIFEGD 119 (146)
T ss_pred EEECCccEEEEEEEeCEEEEe-eEEEEEEEEeeEEEEcCCcEEee----------eecccEEEEccCCEEEeE
Confidence 555555555544444433333 34444455566677777776666 355555666666666433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 410 | ||||
| 2ggo_A | 401 | Crystal Structure Of Glucose-1-Phosphate Thymidylyl | 7e-09 | ||
| 3juj_A | 281 | The Crystal Structure Of Apo- Udp-Glucose Pyrophosp | 2e-05 | ||
| 4aaw_A | 459 | S.Pneumoniae Glmu In Complex With An Antibacterial | 3e-05 | ||
| 1hm9_A | 468 | Crystal Structure Of S.Pneumoniae N-Acetylglucosami | 3e-05 | ||
| 3hl3_A | 269 | 2.76 Angstrom Crystal Structure Of A Putative Gluco | 6e-05 | ||
| 1g95_A | 459 | Crystal Structure Of S.Pneumoniae Glmu, Apo Form Le | 2e-04 | ||
| 1mc3_A | 296 | Crystal Structure Of Rffh Length = 296 | 5e-04 | ||
| 1h5s_D | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 5e-04 | ||
| 3spt_A | 501 | Crystal Structure Of Glmu From Mycobacterium Tuberc | 7e-04 | ||
| 3d8v_A | 495 | Crystal Structure Of Glmu From Mycobacterium Tuberc | 7e-04 | ||
| 3foq_A | 503 | Crystal Structure Of N-Acetylglucosamine-1-Phosphat | 7e-04 | ||
| 1h5r_B | 293 | Thymidylyltransferase Complexed With Thimidine And | 8e-04 | ||
| 1h5t_A | 293 | Thymidylyltransferase Complexed With Thymidylyldiph | 8e-04 | ||
| 1h5s_A | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 8e-04 |
| >pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate Thymidylyltransferase From Sulfolobus Tokodaii Length = 401 | Back alignment and structure |
|
| >pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose Pyrophosphorylase Length = 281 | Back alignment and structure |
|
| >pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial Inhibitor Length = 459 | Back alignment and structure |
|
| >pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu, Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine Length = 468 | Back alignment and structure |
|
| >pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269 | Back alignment and structure |
|
| >pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form Length = 459 | Back alignment and structure |
|
| >pdb|1MC3|A Chain A, Crystal Structure Of Rffh Length = 296 | Back alignment and structure |
|
| >pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Acetyl Coenzyme A And Uridine-Diphosphate-N-Acetylglucosamine Length = 501 | Back alignment and structure |
|
| >pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Uridine-Diphosphate-N-Acetylglucosamine Length = 495 | Back alignment and structure |
|
| >pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu) From Mycobacterium Tuberculosis In A Cubic Space Group Length = 503 | Back alignment and structure |
|
| >pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293 | Back alignment and structure |
|
| >pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293 | Back alignment and structure |
|
| >pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 410 | |||
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 1e-34 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 7e-27 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 3e-23 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 3e-20 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 4e-19 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 5e-18 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 1e-16 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 8e-16 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 8e-12 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 9e-12 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 6e-10 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 1e-09 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 3e-06 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 1e-09 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 2e-06 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 4e-06 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 1e-09 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 7e-09 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 2e-06 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 8e-06 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 2e-08 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 4e-05 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 2e-07 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 4e-04 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 3e-07 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 1e-06 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 1e-04 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 4e-07 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 5e-06 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 6e-07 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 2e-06 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 7e-07 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 7e-07 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 2e-06 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 9e-07 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 3e-06 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 3e-06 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 7e-06 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 8e-05 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 3e-05 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 4e-05 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 3e-04 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 4e-05 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 8e-05 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 9e-05 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 6e-04 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 1e-04 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 2e-04 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 2e-04 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 4e-04 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 6e-04 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 6e-04 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 7e-04 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 7e-04 |
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-34
Identities = 74/369 (20%), Positives = 139/369 (37%), Gaps = 69/369 (18%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLVGFYEEREF 65
A I+ G G R P++ PK P+ +P++ + I + I ++ + +E
Sbjct: 3 AFILAAG--SGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNKE- 59
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP--L 123
Y E+ I ++D G+ A+ + + D ++ D+ S +
Sbjct: 60 --YFEKKLKEISI---VTQKDDIKGTGAAILSAKF---NDE---ALIIYGDLFFSNEKEI 108
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
++ N I+ +KV + +G LV D N L EKPE S+LIN G+
Sbjct: 109 CNIITLKEN-----AIIGVKV--SNPKDYGVLVLDNQ-NNLSKIIEKPEIPPSNLINAGI 160
Query: 184 YVFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242
Y DIF + +S S+R + E LT D ++ +A
Sbjct: 161 YKLNSDIFTYLDKISISERGELE-----------------LT--------DAINLMAKDH 195
Query: 243 QLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLAS-----------GDGTK--- 288
++ E +W I P + + L + + +
Sbjct: 196 RVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKS 255
Query: 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNA 348
I G VY+ ++I P + + P + +IGA V + +I++G +I + V ++
Sbjct: 256 GTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDS 315
Query: 349 IVGWKSSIG 357
++ + G
Sbjct: 316 VIAEDVNFG 324
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 7e-27
Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 28/195 (14%)
Query: 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGF 59
++ +V A+I+ G GTR RPL+ N PK L + +P++ + I K I ++
Sbjct: 22 KEIRVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVG 79
Query: 60 YEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119
Y + +F + + + + + + + +LY ++ + + +
Sbjct: 80 YLKEQFDYLKE----KYGVRLVFNDKYADYNNFYSLYLVKEELANS----YVIDADNYLF 131
Query: 120 SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLI 179
+ RN T + E + LV D ++ + + I
Sbjct: 132 K-------NMFRNDLTRSTYFSVYR--EDCTNEWFLVYGDD-YKVQDIIVDSK---AGRI 178
Query: 180 NCGVYVFTPDIFNAI 194
GV + I
Sbjct: 179 LSGVSFWDAPTAEKI 193
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 3e-23
Identities = 37/258 (14%), Positives = 79/258 (30%), Gaps = 65/258 (25%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEE--R 63
AVI+ G GTR +PKPL +GG ++ + I + Y +
Sbjct: 21 AVILAAG--LGTRLGG----VPKPLVRVGGCEIILRTMKLLSPHVSEFIIVASRYADDID 74
Query: 64 EFALYVSSISNELRIPVRYLREDKPH-GSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP 122
F + ++ + +R D+P G+ +L ++ + + L D S
Sbjct: 75 AF------LKDK-GFNYKIVRHDRPEKGNGYSLLVAKNHVEDR----FILTMGDHVYSQ- 122
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCG 182
+ ++ G+ + + ++ + + + D ++ G
Sbjct: 123 --QFIEKAVRGEGVIADREPRF--VDIGEATKIRVE--DGRVAKIGKDLRE--FDCVDTG 174
Query: 183 VYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242
+V IF + + ++ LS +
Sbjct: 175 FFVLDDSIFEHAEKLRD------------------------------REEIPLSEIVKLA 204
Query: 243 QL-YTYETMDFWEQIKTP 259
+L TY + W + T
Sbjct: 205 RLPVTYVDGELWMDVDTK 222
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 3e-20
Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 38/225 (16%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA-----CKRIYLVGFYEEREF 65
A+IM GG KGTR + KPL L G+ ++ + +S I++ +
Sbjct: 3 ALIMAGG--KGTRMGGV----EKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKT 56
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP--L 123
Y++S + + + G L E +++ D+ +
Sbjct: 57 KEYINSAYKD--YKNIVVIDTSGKGYIEDLNECIGYFSEP----FLVVSSDLINLKSKII 110
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
++D IK ++ P + L+ +
Sbjct: 111 NSIVDYFYC---------IKAKTPDVEALAVMIPKEK-------YPNPSIDFNGLVPADI 154
Query: 184 YVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228
V +P + + + N +++ + L+ A L D +
Sbjct: 155 NVVSPKHGYQKEEIMVIDELIFN---INTKDDLKLAEMLLKKDGL 196
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 4e-19
Identities = 52/272 (19%), Positives = 93/272 (34%), Gaps = 73/272 (26%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLV-GFYE-------- 61
AVI+ GG GTR ++ PKP+ +GG+P++ H + ++Y V G +
Sbjct: 5 AVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIM----KMYSVHGIKDFIICCGYK 58
Query: 62 ----EREFALYVSSIS----------------NELRIPVRYLREDKPHGSAGALYNFRDL 101
+ FA Y +S V + + G L +
Sbjct: 59 GYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEY 118
Query: 102 IMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161
+ + D + +D H+ +G T+ +FG L D
Sbjct: 119 V--KDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFP----PGRFGAL--DIQA 170
Query: 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATR 221
++ + EKP+ +IN G +V P + + I + +++E
Sbjct: 171 GQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDNDA------------TTWE------- 210
Query: 222 NLTTDFVRLDQDILSPLAGKKQLYTYETMDFW 253
Q+ L LA + +L +E FW
Sbjct: 211 ----------QEPLMTLAQQGELMAFEHPGFW 232
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 5e-18
Identities = 75/438 (17%), Positives = 145/438 (33%), Gaps = 103/438 (23%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYE 61
+A ++ GG +G+R + L+ KP GG+ ++ +S +RI + Y+
Sbjct: 12 DAMAYVLAGG--RGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYK 69
Query: 62 EREFALYVSSISNELRIPVR--------YLREDKPH---GSAGALYNFRDLIMEDNPSHI 110
++ + R R + G+A A+Y D+I P ++
Sbjct: 70 AHSLIRHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYM 129
Query: 111 FLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEK 170
+L D ML H + G TI ++V A+ FG + + +E++ + EK
Sbjct: 130 VILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEK-DEIIDFIEK 188
Query: 171 PETFVSDLINC-------GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNL 223
P N G+YVF EA++ +
Sbjct: 189 PADPPGIPGNEGFALASMGIYVFHTKFL---------------------MEAVRRDAADP 227
Query: 224 TT--DFVRLDQDILSPLAGKKQLYTYETMD-----------FWEQIKT------------ 258
T+ DF + DI+ + + + D +W + T
Sbjct: 228 TSSRDFGK---DIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLT 284
Query: 259 ---PGMSLKCSGLYLAQFRL-TSPNLLA----SGDGTKNATIIGDVYVHPSAKIHPTAKI 310
P + +Y + + T + D V I
Sbjct: 285 DVVPDLD-----IYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIIS----- 334
Query: 311 GPNVS---ISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGD 367
G ++ + R + RL + ++L V+I +A ++N ++ I V + +
Sbjct: 335 GAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGEDPE 394
Query: 368 FNAKL------GITILGE 379
+AK GI ++ +
Sbjct: 395 LDAKRFRRTESGICLITQ 412
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 73/428 (17%), Positives = 143/428 (33%), Gaps = 120/428 (28%)
Query: 4 SEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLVG 58
+ +++ G GTR R S + PK L L G+ M+ H + A R+ +V
Sbjct: 8 TFPGDTAVLVLAAG--PGTRMR--S-DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVL 62
Query: 59 FYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC 118
++ + A V +++ L + +D+P G+ A+ + +D ++ + + D
Sbjct: 63 GHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDT- 121
Query: 119 CSFPL--PE----MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTE--- 169
PL + ++ HR T+L + + +G ++ D +E++ E
Sbjct: 122 ---PLLDADTLADLIATHRAVSAAVTVLT--TTLDDPFGYGRILRTQD-HEVMAIVEQTD 175
Query: 170 -KPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRN------ 222
P +N GVY F D L AL + N
Sbjct: 176 ATPSQREIREVNAGVYAF----------------DIAAL-----RSALSRLSSNNAQQEL 214
Query: 223 -LTTDFVRLDQDILSPLAGK-KQLYTYETMDFWE--------QIKTPGMSLKCSGLYLA- 271
LT D+++ L + ++ D Q LA
Sbjct: 215 YLT--------DVIAILRSDGQTVHASHVDDSALVAGVNNRVQ--------------LAE 252
Query: 272 -----QFRLTSPNLLASGDGTKNATII--------GDVYVHPSAKIHPTAKIGPNVSISA 318
R+ + +G T++ DV + IHP ++ I
Sbjct: 253 LASELNRRVVA-AHQLAG-----VTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGG 306
Query: 319 NARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRV--QAE-------GDF- 368
+G L + DG + +++ +G +++G ++ + G F
Sbjct: 307 RCVVGPDTTLTDVAVGDGASV-VRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFV 365
Query: 369 ---NAKLG 373
N+ +G
Sbjct: 366 EVKNSTIG 373
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 8e-16
Identities = 76/436 (17%), Positives = 140/436 (32%), Gaps = 138/436 (31%)
Query: 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIY 55
A+I+ G KGTR + S ++PK L + G M+ H + +
Sbjct: 4 SHHHHHHSNFAIILAAG--KGTRMK--S-DLPKVLHKVAGISMLEHVFRSVGAIQPEKTV 58
Query: 56 LV-GFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
V G E + L ++ + + G+ A+ ++ E H ++
Sbjct: 59 TVVGHKAEL--------VEEVLAGQTEFVTQSEQLGTGHAVMMTEPIL-EGLSGHTLVIA 109
Query: 115 CDVCCSFPL--PE----MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-----E 163
D PL E ++D H N+ + TIL ++ +G +V + + E
Sbjct: 110 GDT----PLITGESLKNLIDFHINHKNVATILT--AETDNPFGYGRIVRNDNAEVLRIVE 163
Query: 164 LLHYTEK---PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSAT 220
+K IN G YVF D E L FEAL++
Sbjct: 164 -----QKDATDFEKQIKEINTGTYVF----------------DNERL-----FEALKNIN 197
Query: 221 RN-------LTTDFVRLDQDILSPLAGK-KQLYTYETMDFWE--------QIKTPGMSLK 264
N +T D++ +++ Y DF E
Sbjct: 198 TNNAQGEYYIT--------DVIGIFRETGEKVGAYTLKDFDESLGVNDRVA--------- 240
Query: 265 CSGLYLA------QFRLTSPNLLASGDGTKNATII--------GDVYVHPSAKIHPTAKI 310
LA + R+ + +G + + DV + P +I +
Sbjct: 241 -----LATAESVMRRRINH-KHMVNG-----VSFVNPEATYIDIDVEIAPEVQIEANVIL 289
Query: 311 GPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRV--QAE--- 365
I A + G ++ I G I N+++ + V ++G ++ + +
Sbjct: 290 KGQTKIGAETVLTNGTYVVDSTIGAGAVI-TNSMIEESSVADGVTVGPYAHIRPNSSLGA 348
Query: 366 ----GDF----NAKLG 373
G+F + +G
Sbjct: 349 QVHIGNFVEVKGSSIG 364
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 | Back alignment and structure |
|---|
Score = 64.3 bits (155), Expect = 8e-12
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 14/182 (7%)
Query: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFA 66
VI + G +RF PK + GQ + H +++ +L + A
Sbjct: 3 VIPMAG--MSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTA 60
Query: 67 LYVSSISNELRIPVRYLREDKPHGSAGA--LYNFRDLIMEDNPSHIFLLNCDVCCSFPLP 124
++V + +L I Y+ E A + + + + + + +F
Sbjct: 61 VFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPN 120
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVY 184
+ + L + F + + +SDL + G+Y
Sbjct: 121 FVFPDISQH--SDGYLEVFQGGGDNWSFAKPE---HAGSTKVIQTAEKNPISDLCSTGLY 175
Query: 185 VF 186
F
Sbjct: 176 HF 177
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 9e-12
Identities = 69/473 (14%), Positives = 146/473 (30%), Gaps = 132/473 (27%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYE 61
V+ +I+ GG GTR PL+ KP PLG ++ P+S C +IY++ +
Sbjct: 20 SVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 77
Query: 62 EREFALYVSSISNELRIPVR----------YLREDKPH---GSAGALYNFRDLIMEDNPS 108
++S + + P G+A A+ + L E
Sbjct: 78 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVL 137
Query: 109 HIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYT 168
+L D + + AHR T+ + + + A+ FG + D + ++ +
Sbjct: 138 EYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKID-EEGRIIEFA 196
Query: 169 EKPET---------------------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENL 207
EKP+ + + + G+YV ++ +
Sbjct: 197 EKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVI----------------SKDVM 240
Query: 208 RRVSSFEALQSATRNLTTDFVRLDQDIL-SPLAGKKQLYTYE---------TMD-FWE-- 254
L+ DF +++ + ++ Y T++ F+
Sbjct: 241 -----LNLLRDKFPG-ANDFGS---EVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNAN 291
Query: 255 ----QIKTPGMSLKCSGLYLAQFRL-TSPNLLA----SGDGTKNATIIGDVYVHPSAKIH 305
+ P S Y + T P L ++ I + + KIH
Sbjct: 292 LGITKKPVPDFS-----FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIK-NCKIH 345
Query: 306 PTAKIGPNVSISANARIGAGVRLISCIILDG-------------------VEIMENAVVT 346
+ + + I G + +++ + I +N +
Sbjct: 346 -------HSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK 398
Query: 347 NAIVGWKSSIGRWSRV----------QAEGDFNAKLGITILGEAVGVEDEVVV 389
AI+ + IG ++ + + K GI + + + +++
Sbjct: 399 RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 6e-10
Identities = 78/389 (20%), Positives = 134/389 (34%), Gaps = 105/389 (26%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHH------PISACKRIYLVGFYE 61
+ VI+ G KGTR S ++PK L PL G+PMV H + A + G
Sbjct: 8 SMSVVILAAG--KGTRMY--S-DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGG 62
Query: 62 EREFALYVSSISNELR-IPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS 120
E + L + ++ + + G+ A+ +D I +L DV
Sbjct: 63 EL--------LKKTLADPSLNWVLQAEQLGTGHAMQQAAPHFADD--EDILMLYGDV--- 109
Query: 121 FPL--PE----MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTE----K 170
PL + +L A GG+ +L V ++ S +G +V + +++ E
Sbjct: 110 -PLISVDTLQRLLAAKPE-GGI-GLLT--VKLDNPSGYGRIVRE--NGDVVGIVEHKDAS 162
Query: 171 PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRN-------L 223
+ IN G+ V + +L L N +
Sbjct: 163 DAQREINEINTGILVA----------------NGRDL-----KRWLSLLDNNNAQGEFYI 201
Query: 224 TTDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLA------QFRLT 276
T DI++ K++ T E G++ + L L+ Q
Sbjct: 202 T--------DIIALAHADGKKIATVHPTRLSE---VEGVN---NRLQLSALERVFQTEQA 247
Query: 277 SPNLLASGDGTKNATII--------GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL 328
LL +G ++ G++ I I +V + RIG G L
Sbjct: 248 E-KLLLAG-----VMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVL 301
Query: 329 ISCIILDGVEIMENAVVTNAIVGWKSSIG 357
+C+I D EI V+ +A + ++G
Sbjct: 302 KNCVIGDDSEISPYTVLEDARLDANCTVG 330
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIG 357
+HP+A + A++ P+ S+ A A I +G R I GV I + V +G +S IG
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGAR-----IGAGVSIGAHCV-----IGARSVIG 171
Query: 358 RWSRVQA 364
+
Sbjct: 172 EGGWLAP 178
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL-ISCIILDGVEIMENAVV 345
+A + V A I A+IG VSI A+ IGA + + V + + +
Sbjct: 130 ADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTI 188
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRL-----IS--CIILDGVEIMENAVV-TNAI 349
+HP+A IHPTA I +V I A + + I +I + E++ + +
Sbjct: 127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVV 186
Query: 350 VGWKSSIGRWSRVQA 364
+ + SIG+ +Q
Sbjct: 187 IRERVSIGKRVIIQP 201
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 300 PSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV-TNAIVGWKSSIGR 358
IHPTA I P I + I ++ + + + +++G S++G
Sbjct: 123 GFPGIHPTAVIHPTAIIEDHVCIEPYA-----VVCQHAHVGSACHIGSGSVIGAYSTVGE 177
Query: 359 WSRVQA 364
S +
Sbjct: 178 HSYIHP 183
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 21/108 (19%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL-ISCIILDGVEIMENAVV- 345
A I V + P A + A +G I + + IGA + I V I E +
Sbjct: 135 PTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIG 194
Query: 346 ------TNAIVG------WKSSIGRWSRVQAEGDFNAKLGITILGEAV 381
A++G S+ G+ + LG I+ + V
Sbjct: 195 KRVIIQPGAVIGSCGFGYVTSAFGQHKHL-------KHLGKVIIEDDV 235
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV-TNAIVGWKSSI 356
+ PSA I TAK+G NVSI ANA I +GV + D V I V N+ +G S +
Sbjct: 100 IAPSAVIDATAKLGNNVSIGANAVIESGVE-----LGDNVIIGAGCFVGKNSKIGAGSRL 154
Query: 357 GRWSRV 362
W+ V
Sbjct: 155 --WANV 158
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 7e-09
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVV-TNAIVGWKS 354
+ +AK+ IG N I + +G V + + C + +I + + N + +
Sbjct: 105 VIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEI 164
Query: 355 SIGRWSRVQA 364
IG+ +Q+
Sbjct: 165 QIGQNCLIQS 174
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 299 HPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV-TNAIVGWKSSIG 357
P+ I P+A I + N IGA +I GVE+ +N ++ VG S IG
Sbjct: 95 QPAQNIAPSAVIDATAKLGNNVSIGANA-----VIESGVELGDNVIIGAGCFVGKNSKIG 149
Query: 358 RWSRVQA 364
SR+ A
Sbjct: 150 AGSRLWA 156
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 8e-06
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL-ISCIILDGVEIMENAVV 345
A + +V + +A I ++G NV I A +G ++ + V I +
Sbjct: 108 ATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQI 166
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVVTNAIVGW 352
+ SA I IG NV+I N I G + I G I +++ +V +
Sbjct: 4 NISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDF 60
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 11/114 (9%)
Query: 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV-TN 347
+ + +A I I + I N + G V I + +I N + T
Sbjct: 64 RINKKHPLIIGENALIRTENVIYGDTIIGDNFQTGHKV-----TIRENTKIGNNVKIGTL 118
Query: 348 AIVGWKSSIGRWSRVQAEGDFNAKLG-ITILGEAVGVEDEVVVTNSIVLPNKTL 400
+ + IG + + + N +G +I+ + V + VV+TN P+ L
Sbjct: 119 SDIQHHVYIGNYVNIHS----NVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNEL 168
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 292 IIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVG 351
+ G + +I I NV + +IG G L + +I + VEI +V+ ++IVG
Sbjct: 262 LRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVG 321
Query: 352 WKSSIG 357
K++IG
Sbjct: 322 EKAAIG 327
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI 54
+ AVI+ G KGTR S ++PK L + G+PMV H I ++
Sbjct: 5 ALSAVILAAG--KGTRMY--S-DLPKVLHTIAGKPMVKHVIDTAHQL 46
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 3e-07
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSI 356
+HPSA +HP A IG VS+ IG+ V+ + +G ++ ++ V N +G +
Sbjct: 10 IHPSAVVHPNAVIGKGVSVGPYCTIGSSVK-----LGNGCKLYPSSHVFGNTELGESCVL 64
Query: 357 GRWSRVQAEGDFNAKLG 373
+ V E +G
Sbjct: 65 MTGAVVGDELPGYTFIG 81
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVVTNAIVGWKSS 355
VHP+A I +GP +I ++ ++G G +L + E+ E+ V+ V
Sbjct: 15 VVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDEL 74
Query: 356 IGR 358
G
Sbjct: 75 PGY 77
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 299 HPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV-TNAIVGWKSSIG 357
IHP+A + PN I +G C I V++ + ++ V + +G
Sbjct: 5 DSEVLIHPSAVVHPNAVIGKGVSVGPY-----CTIGSSVKLGNGCKLYPSSHVFGNTELG 59
Query: 358 R 358
Sbjct: 60 E 60
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-07
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIG 357
+ +A I P A+I V I IG GV+ + +GV++ N + G + +G
Sbjct: 4 IAKTAIISPKAEINKGVEIGEFCVIGDGVK-----LDEGVKLHNNVT----LQGH-TFVG 53
Query: 358 RWSRV 362
+ + +
Sbjct: 54 KNTEI 58
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVV-TNAIVG 351
+ P A+I+ +IG I ++ GV+L + + + +N + A++G
Sbjct: 9 IISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLG 65
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-07
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIG 357
+HPSA I A++G +V I A A + + I + V I + A I+ ++IG
Sbjct: 7 IHPSAVIEEGAQLGDDVVIEAYAYVSKDAK-----IGNNVVIKQGAR----ILSD-TTIG 56
Query: 358 RWSRV 362
SRV
Sbjct: 57 DHSRV 61
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDG 336
+ A++ I +S +A+IG V + +
Sbjct: 12 VIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILS 51
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 7e-07
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSS 355
+ +HP+A I P A++ +V + + I V I +G I + I S
Sbjct: 1 MKIHPTAIIDPKAELHESVEVGPYSIIEGNVS-----IQEGTIIEGHVK----ICAG-SE 50
Query: 356 IGR 358
IG+
Sbjct: 51 IGK 53
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT 346
+HP+A I P A++ V + A +G+ V I I ++V+
Sbjct: 25 IHPTAIIEPGAQLHETVEVGPYAIVGSNVT-----IGARTTIGSHSVIE 68
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDG 336
+ P A++H T ++GP + +N IGA + S +++G
Sbjct: 30 IIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEG 69
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 9e-07
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT 346
VHP+A + A IG N I +G V I +G + + VV
Sbjct: 8 VHPTAIVEEGASIGANAHIGPFCIVGPHVE-----IGEGTVLKSHVVVN 51
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-06
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDG 336
V A I A IGP + + IG G L S ++++G
Sbjct: 13 IVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNG 52
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 27/139 (19%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFAL 67
+ A+++ GG K K L P G+PMV + A +
Sbjct: 2 RPSAIVLAGG--KEAWAERFG-VGSKALVPYRGRPMVEWVLEALYAA---------GLSP 49
Query: 68 YVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL--PE 125
+ L D+ +E + + D+ P E
Sbjct: 50 VYVGENPGLVPAPALTLPDRGGLLENLE-----QALEHVEGRVLVATGDI----PHLTEE 100
Query: 126 ----MLDAHRNYGGMGTIL 140
+LD + I+
Sbjct: 101 AVRFVLDKAPEAALVYPIV 119
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 7e-06
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 297 YVHPSAKIHPTAKIG--------PNVSISANARIGAGVRLIS-------CIILDGVEIME 341
+H SA I P+A + P V I+A A+I GV L + C+I + +
Sbjct: 77 LIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSV 136
Query: 342 NAVVT-NAIVGWKSSIG 357
A N +G +G
Sbjct: 137 GAKCAGNVKIGKNCFLG 153
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 8e-05
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL-ISCIILDGVEIMENAVV 345
K + + I + + + N +IG L I+ +L + + +++++
Sbjct: 112 KGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSIL 170
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 3e-05
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL-ISCIILDGVEIMENAVV 345
+HP+A + A+IG + I I G + C + V + +
Sbjct: 3 MATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRI 54
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 20/105 (19%)
Query: 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSI 356
+HPSA + P+ ++G V++ A I A + I++ T A+V +
Sbjct: 101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIIN----------TGAVVDHDCRL 150
Query: 357 GRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTL 400
G + + G V V + + + V+P T+
Sbjct: 151 GAACHLGP--------ASALAGG-VSVGERAFLGVGARVIPGVTI 186
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 287 TKNATIIGDVYVHPSAKIHPTAKIG------PNVSISANARIGAGVRL-ISCIILDGVEI 339
++ I ++ A + ++G P +++ +G L + ++ GV I
Sbjct: 127 NADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTI 186
Query: 340 MENAVV 345
+ +V
Sbjct: 187 GADTIV 192
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 4e-05
Identities = 10/70 (14%), Positives = 20/70 (28%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTN 347
+ + A + A I + I N + L + + G EN + N
Sbjct: 266 ASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIIN 325
Query: 348 AIVGWKSSIG 357
+ +
Sbjct: 326 SRLERNCVTA 335
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 8e-05
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 293 IGD-VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVG 351
IG+ V + + IG I+A + G I + D I +V AI
Sbjct: 55 IGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGI--EMYDFANISSRTIVYAAIDD 112
Query: 352 WKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTL 400
+ + + + + + + V++ +SI+ PN +
Sbjct: 113 FSGNALMGPTIPNQYKNVKTGKVIL-------KKHVIIGAHSIIFPNVVI 155
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 9e-05
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSS 355
+ P A I +IG N I NA I G +I +G I NA++G +++
Sbjct: 92 ARIEPGAIIRDHVEIGDNAVIMMNATINIG-----AVIGEGSMID-----MNAVLGGRAT 141
Query: 356 IGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLP 396
+G+ V A + + V VED+VV+ N +VL
Sbjct: 142 VGKNCHVGAGAVLAGVIE-PPSAKPVIVEDDVVIGANVVVLE 182
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 6e-04
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 28/92 (30%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----------------- 330
NA I+ + ++ A I + I N + A +G + +
Sbjct: 108 DNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVI 167
Query: 331 ----------CIILDGVEIMENAVV-TNAIVG 351
++L+GV + + AVV A+V
Sbjct: 168 VEDDVVIGANVVVLEGVTVGKGAVVAAGAVVT 199
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 323 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 15/136 (11%)
Query: 69 VSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIF--LLNCDVCCSFP-LPE 125
+ ++ ++ + +DKP G A+ ++ +D+ +L D+ +
Sbjct: 98 IRRAADLIKA--VPVTQDKPLGLGHAVGLAESVL-DDDEDV-VAVMLPDDLVLPTGVMER 153
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFG-----ELVADPDTNELLHYTEKP--ETFVSDL 178
M +GG + ++VS S++G D D ++ EKP E S L
Sbjct: 154 MAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRL 212
Query: 179 INCGVYVFTPDIFNAI 194
G Y+ IF+A+
Sbjct: 213 AATGRYLLDRKIFDAL 228
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 39/237 (16%), Positives = 66/237 (27%), Gaps = 61/237 (25%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG--GQPMVHHPISACKRIYLVGFYEE--R 63
K ++ G G+R+ K L +G G ++ + + R
Sbjct: 5 KPTLFVLAAG--MGSRYG-----SLKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRH 57
Query: 64 EFALYV-SSISNEL--RIPVRYL---------------REDKPHGSAGALYNFRDLIMED 105
F I + RIPV + +KP G+ A+ RD I E
Sbjct: 58 SFEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIRE- 116
Query: 106 NPSHIFLLNCD----VCCSFPLPEMLDAHRNYGGM----GTILVIKVSAESASQFGELVA 157
++N D L L G G + +S G
Sbjct: 117 ---PFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQV 173
Query: 158 DPDTNELLHYTEKP-------------------ETFVSDLINCGVYVFTPDIFNAIQ 195
D + + L E+ ++ ++ FTPD F+ +
Sbjct: 174 D-EKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSE 229
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA------CKRIYLVGFYE 61
+ A I+ GG KGTR ++++PK PL G+P++ H + +I + E
Sbjct: 3 LIYAQILAGG--KGTRMG--NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKE 58
Query: 62 EREFA 66
A
Sbjct: 59 WMNHA 63
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA------CKRIYLVGFYE 61
V +++ GG +G R + ++PK PL GQP+ + K I +V
Sbjct: 4 SVSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPF 58
Query: 62 EREFALYVSSISNELRIPVRY 82
R+ + + + +
Sbjct: 59 FRD---IFEEYEESIDVDLSF 76
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 6e-04
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA------CKRIYLVGFYE 61
VA+++ G KG R N+PK + G+ + +P+S + +V E
Sbjct: 13 MNVAILLAAG--KGERMS---ENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRRE 67
Query: 62 EREFA 66
E
Sbjct: 68 WFEVV 72
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Length = 281 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 6e-04
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYT---EKP--ETFVSD 177
L +M ++ Y + + +V+ E S++G + + + EKP E S+
Sbjct: 142 LKQMTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDAPSN 200
Query: 178 LINCGVYVFTPDIFNAI 194
L G Y+ TPDIF +
Sbjct: 201 LAVIGRYILTPDIFEIL 217
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Length = 297 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 7e-04
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYT---EKP--ETFVSD 177
L +M+DA+ GG I +V + ++G + L EKP T S+
Sbjct: 151 LKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTAPSN 209
Query: 178 LINCGVYVFTPDIFNAI 194
L G Y+ P++ +
Sbjct: 210 LSVIGRYILQPEVMRIL 226
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 7e-04
Identities = 15/127 (11%), Positives = 44/127 (34%), Gaps = 19/127 (14%)
Query: 283 SGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIME 341
GD N I V+ A++ + ++ ++++ + +C++ V +
Sbjct: 195 EGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGG 254
Query: 342 NAVVT--NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNK 398
+A V ++ + I G + + +E +V ++ + V+
Sbjct: 255 HAEVRGGPILLDDRVLIE---------------GHACIQGEILIERQVEISGRAAVIAFD 299
Query: 399 TLNVSVH 405
+ +
Sbjct: 300 DNTIHLR 306
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 410 | |||
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 99.97 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 99.97 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.97 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.97 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.97 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 99.97 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 99.97 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.96 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.96 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.94 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.93 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.92 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.91 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.9 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.89 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.88 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.86 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.85 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.85 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.84 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.81 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.79 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.76 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.76 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.74 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.74 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.72 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.72 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.72 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.71 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.68 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.68 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.67 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.66 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.64 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.63 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.62 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.62 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.62 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.61 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.61 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.61 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.6 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.6 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.6 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.59 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.59 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.59 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.59 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.59 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.59 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.58 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.58 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.57 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.57 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.57 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.57 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.57 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.57 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.57 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.56 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.56 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.56 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.55 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.55 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.55 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.54 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.54 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.53 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.52 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.52 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.52 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.52 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.52 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.51 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.51 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.51 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.51 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.5 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.5 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.5 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.5 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.49 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.48 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.48 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.48 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.48 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.48 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.47 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.47 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.46 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.45 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.45 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.45 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.44 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 99.43 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.43 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.43 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.43 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.42 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.42 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.42 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.39 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.39 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.39 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 99.39 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 99.38 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 99.37 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.37 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.37 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.37 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 99.37 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.36 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 99.35 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.35 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 99.34 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 99.33 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.32 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 99.32 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 99.32 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 99.31 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 99.31 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 99.3 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.3 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 99.28 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 99.25 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 99.25 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 99.25 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.24 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 99.24 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.23 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 99.2 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.2 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 99.18 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.17 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 99.16 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 99.15 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 99.14 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 99.14 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 99.11 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 99.07 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 99.04 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 99.03 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 99.03 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 99.0 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 99.0 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.99 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.97 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.97 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.94 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.91 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.86 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.82 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.78 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.75 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.73 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.66 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.33 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 97.46 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 96.91 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 96.5 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 90.91 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 88.38 | |
| 1xhb_A | 472 | Polypeptide N-acetylgalactosaminyltransferase 1; g | 85.68 |
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-47 Score=373.08 Aligned_cols=341 Identities=19% Similarity=0.305 Sum_probs=266.7
Q ss_pred CCCCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCC
Q 015259 4 SEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELR 77 (410)
Q Consensus 4 ~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~ 77 (410)
+||++|+||||||| .|+||+|+|...||+|+|++|+ |||+|+|+.|.+ ++|++.+..+.+.+++++. |+
T Consensus 8 ~mm~~~~avILAaG--~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~---~~ 82 (420)
T 3brk_X 8 PLARDAMAYVLAGG--RGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRG---WD 82 (420)
T ss_dssp CGGGGEEEEEEECC--CCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHH---SC
T ss_pred hhhhceEEEEEcCC--CCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhh---hc
Confidence 56778999999999 9999999999999999999999 999999999876 7777777667888887752 43
Q ss_pred c-------cEEEeeCC----CC---CCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEe
Q 015259 78 I-------PVRYLRED----KP---HGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIK 143 (410)
Q Consensus 78 ~-------~i~~i~~~----~~---~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~ 143 (410)
. .+.++... .. .|++++++.+++++.....++|++++||++++.++.++++.|+++++++++++.+
T Consensus 83 ~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~ 162 (420)
T 3brk_X 83 FFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLE 162 (420)
T ss_dssp CCCGGGTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEE
T ss_pred cccccccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEee
Confidence 2 24444322 12 7999999999988853224689999999998889999999998888888888877
Q ss_pred cCcccccccceEEEcCCCCcEEEEecCCCCcc-------ccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHh
Q 015259 144 VSAESASQFGELVADPDTNELLHYTEKPETFV-------SDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEA 215 (410)
Q Consensus 144 ~~~~~~~~~~~v~~d~~~~~v~~i~ekp~~~~-------~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ 215 (410)
.+.+++..|+++..+ ++++|..|.|||.... +.+.++|+|+|++++| +.+.+.....
T Consensus 163 ~~~~~~~~~g~v~~d-~~g~v~~~~ekp~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~-------------- 227 (420)
T 3brk_X 163 VPRMEATGFGVMHVN-EKDEIIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADP-------------- 227 (420)
T ss_dssp EETTGGGGSEEEEEC-TTSBEEEEEESCSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC---------------
T ss_pred cCccccCcccEEEEC-CCCcEEEeEeCCCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccC--------------
Confidence 643456789999888 6789999999986543 6789999999999986 5665422110
Q ss_pred hhhhccCCCCCeeeeccchhccccCCCceeEEec-----------cceeeecCCccchhhhhHHHHhhhhhcCCCcccCC
Q 015259 216 LQSATRNLTTDFVRLDQDILSPLAGKKQLYTYET-----------MDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG 284 (410)
Q Consensus 216 ~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~-----------~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~ 284 (410)
.+..++..|+++.++++++++++.. +++|.+++|+++|.++++.++...... .++..
T Consensus 228 ---------~~~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~--~~~~~- 295 (420)
T 3brk_X 228 ---------TSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDL--DIYDK- 295 (420)
T ss_dssp ------------------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSS--CTTCC-
T ss_pred ---------CccccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchh--hcCCC-
Confidence 0112233688888887779999998 889999999999999999887653221 11111
Q ss_pred CCCCCcEEccCeEECCCCEECC-----CcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCC
Q 015259 285 DGTKNATIIGDVYVHPSAKIHP-----TAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (410)
Q Consensus 285 ~~~~~~~i~~~~~i~~~~~i~~-----~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (410)
...+.+.+.+++.+.+++ ++.+ .++.||++|.| +++.|.+|+||++|+|+++|.|.+|+|+++|.||++
T Consensus 296 ----~~~i~~~~~i~~~~~i~~~~~~~~~~i-~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~ 369 (420)
T 3brk_X 296 ----SWPIWTYAEITPPAKFVHDDEDRRGSA-VSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRH 369 (420)
T ss_dssp ----SSCCCCCCCCCCCCEEECBCSSCBCEE-ESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEECTT
T ss_pred ----CCceeeccccCCCcEEecccccCCcEe-cCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCC
Confidence 122334455566666655 7777 49999999999 899999999999999999999999999999999999
Q ss_pred cEEccCCCCCcceeeeEECCCCEECCCcEEcce
Q 015259 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 392 (410)
Q Consensus 360 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~ 392 (410)
|.|.+ ++||+++.|++|+++.++
T Consensus 370 ~~i~~----------~~ig~~~~i~~~~~i~~~ 392 (420)
T 3brk_X 370 AQLSN----------VVIDHGVVIPEGLIVGED 392 (420)
T ss_dssp CEEEE----------EEECTTCEECTTCEESSC
T ss_pred CEEec----------eEECCCCEECCCCEEeCC
Confidence 99987 999999999999999443
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-46 Score=369.60 Aligned_cols=360 Identities=18% Similarity=0.304 Sum_probs=258.0
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcc-cCC-
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISN-ELR- 77 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~-~~~- 77 (410)
|++|+||||||| +|+||+|||..+||+|+|++|+ |||+|+|+.|.+ ++|++.+..+.+.+++.+... .++
T Consensus 18 ~~~~~avILAaG--~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~ 95 (451)
T 1yp2_A 18 SRSVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG 95 (451)
T ss_dssp HHHEEEEEC--------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC-----
T ss_pred ccceEEEEECCC--CCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhhhccccc
Confidence 446999999999 9999999999999999999999 999999999876 777777766777777764210 111
Q ss_pred ----ccEEEee--C-----CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCc
Q 015259 78 ----IPVRYLR--E-----DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSA 146 (410)
Q Consensus 78 ----~~i~~i~--~-----~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~ 146 (410)
..+.++. + ....|++++++.+++++.....++|++++||++++.++.++++.|+++++++++++.+...
T Consensus 96 ~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~ 175 (451)
T 1yp2_A 96 YKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDE 175 (451)
T ss_dssp ---CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECH
T ss_pred ccccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcCh
Confidence 0133332 1 1257999999999998853224789999999998889999999998888888988877643
Q ss_pred ccccccceEEEcCCCCcEEEEecCCCCc---------------------cccceeeeEEEEcHHHH-HHhhhcccccccc
Q 015259 147 ESASQFGELVADPDTNELLHYTEKPETF---------------------VSDLINCGVYVFTPDIF-NAIQGVSSQRKDR 204 (410)
Q Consensus 147 ~~~~~~~~v~~d~~~~~v~~i~ekp~~~---------------------~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~ 204 (410)
+++..|+++..| ++++|+.|.|||... .+.++++|+|+|++++| +.+++...
T Consensus 176 ~~~~~~g~v~~d-~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~----- 249 (451)
T 1yp2_A 176 KRATAFGLMKID-EEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFP----- 249 (451)
T ss_dssp HHHTTSEEEEEC-TTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCT-----
T ss_pred hhcccCCEEEEC-CCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcc-----
Confidence 456789999998 678999999998632 25688999999999987 56654321
Q ss_pred hhhhccchhHhhhhhccCCCCCeeeeccchhccccCC-CceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccC
Q 015259 205 ENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLAS 283 (410)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~ 283 (410)
...++..++++.++++ .++++++.+++|.+++|+++|.++++.++.+... ...+..+
T Consensus 250 ---------------------~~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~-~~~~~~~ 307 (451)
T 1yp2_A 250 ---------------------GANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVP-DFSFYDR 307 (451)
T ss_dssp ---------------------TCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSC-SSCSCCS
T ss_pred ---------------------cccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhccccc-chhccCC
Confidence 1112335778777765 6899999999999999999999999988765421 1111111
Q ss_pred CC-------CCCCcEEc----cCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCC----------------
Q 015259 284 GD-------GTKNATII----GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDG---------------- 336 (410)
Q Consensus 284 ~~-------~~~~~~i~----~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~---------------- 336 (410)
.. -..++.+. .++.|+++|.|+. +.|. +++||++|.||++|.|.++++..+
T Consensus 308 ~~~i~~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~-~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g 385 (451)
T 1yp2_A 308 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKG 385 (451)
T ss_dssp SSCCCCCCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEE-SCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTT
T ss_pred CCeeccCCccCCCeEEcceEEeCeEECCCCEEcc-eEEe-ccEECCCCEECCCCEEcCceEECCCCcccccccccccccC
Confidence 10 00122220 2345555555553 5555 888999999999999988887777
Q ss_pred ---CEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcE-E-cceEEcCCcEE
Q 015259 337 ---VEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVV-V-TNSIVLPNKTL 400 (410)
Q Consensus 337 ---~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~-v-~~~~v~~~~~v 400 (410)
+.||++|.|.+++|+++|.||+++.|.+..... +...||++++||++++ | .+++|++|++|
T Consensus 386 ~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~---~~~~ig~~~~ig~~~v~Ig~~a~i~agsvv 451 (451)
T 1yp2_A 386 SVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQ---EAARETDGYFIKSGIVTVIKDALIPSGIII 451 (451)
T ss_dssp CCCSEECTTCEEESEEECTTCEECTTCEECCSSCCS---CEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred ceeEEECCCCEEeccEeCCCcEECCCCEEeCCcccc---cCceeCCCEEEcCCEEEECCCcEECCCccC
Confidence 899999999999999999999999998742211 1247888888888863 3 56666666654
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=368.29 Aligned_cols=374 Identities=17% Similarity=0.240 Sum_probs=273.4
Q ss_pred CCCCCCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhccc
Q 015259 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNE 75 (410)
Q Consensus 1 ~~~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~ 75 (410)
|+.|. .+.+|||||| +||||+|+| ||+|+||+|+|||+|+|+.|.+ ++|++.+..+.+++++++..+.
T Consensus 7 m~~~~--~~~vvILAaG--~GtRm~~~~---pK~l~pv~gkp~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~~ 79 (501)
T 3st8_A 7 MTFPG--DTAVLVLAAG--PGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADT 79 (501)
T ss_dssp -------CEEEEEEECS--CCGGGCCSS---CGGGCEETTEEHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHHH
T ss_pred CCCCC--CceEEEECCc--CcccCCCCC---CHHHeEECChhHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHHh
Confidence 44443 7899999999 999999964 9999999999999999999987 7777778888999999875567
Q ss_pred CCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccc
Q 015259 76 LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 76 ~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (410)
++.++.|+.|++++||+++++++++++.+...+.+++++||.++ ...+.+++++|++.++++++++++. +++..||
T Consensus 80 ~~~~i~~~~q~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~--~dp~~yG 157 (501)
T 3st8_A 80 LGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTL--DDPFGYG 157 (501)
T ss_dssp HTSCCEEEECSSCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEEC--SCCTTSC
T ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeecc--CCchhcc
Confidence 78899999999999999999999999975445689999999864 3458999999999999999999998 7889999
Q ss_pred eEEEcCCCCcEEEEecCCCC----ccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeee
Q 015259 154 ELVADPDTNELLHYTEKPET----FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVR 229 (410)
Q Consensus 154 ~v~~d~~~~~v~~i~ekp~~----~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (410)
.+..+ ++++|..|.|+++. ..++++++|+|+|+++.+..+..... ..+.. ..+.
T Consensus 158 ~i~~~-~~g~v~~ivEk~~~~~~~~~i~~in~Giy~f~~~~l~~~l~~l~---~~n~~------------------~e~y 215 (501)
T 3st8_A 158 RILRT-QDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLS---SNNAQ------------------QELY 215 (501)
T ss_dssp EEEEC-TTCCEEEEECGGGCCHHHHHCCEEEEEEEEEEHHHHHHHHTTCC---CCSTT------------------CSCC
T ss_pred ccccc-cceeEEeeccccCCChhhccceeeeceeeeecchhHHHhhhhhc---ccccc------------------cccc
Confidence 99998 78899999998653 35788999999999988754433211 11112 2222
Q ss_pred eccchhccccCC-CceeEEeccceeeec--CCccchhhhhHHHHhhhhhc----CCCcccC------CC-----C---CC
Q 015259 230 LDQDILSPLAGK-KQLYTYETMDFWEQI--KTPGMSLKCSGLYLAQFRLT----SPNLLAS------GD-----G---TK 288 (410)
Q Consensus 230 l~~d~l~~l~~~-~~i~~~~~~g~~~~i--~t~~~~~~an~~~~~~~~~~----~~~~~~~------~~-----~---~~ 288 (410)
+ .|++..+... ..+..+...+.|... ++...+.++...+..+.... ...+..+ .+ + ..
T Consensus 216 l-td~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv~I~~ 294 (501)
T 3st8_A 216 L-TDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHP 294 (501)
T ss_dssp T-THHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTCEECS
T ss_pred h-hhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcceecc
Confidence 3 7777766544 467777766555543 33333333333222211110 0000000 00 0 01
Q ss_pred CcEEcc---------------------------------CeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECC
Q 015259 289 NATIIG---------------------------------DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILD 335 (410)
Q Consensus 289 ~~~i~~---------------------------------~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~ 335 (410)
...+.+ ...+++++.+++.+.++++++|+++|.||.++.+.+|+||+
T Consensus 295 ~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~ 374 (501)
T 3st8_A 295 GTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGT 374 (501)
T ss_dssp SEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESCEECT
T ss_pred eeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEccceecC
Confidence 111111 12344555666777777788888899999999999999999
Q ss_pred CCEECCCCEEEeeEECCCCEECCCcEEccCCCCCccee-eeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCc
Q 015259 336 GVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLG-ITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQE 407 (410)
Q Consensus 336 ~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~-~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~ 407 (410)
++.|++.+.+.+++|+++|.||+++.+-+... ..+ .++||++|.||.++.| .++.|++|++|+.|||+.
T Consensus 375 gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg---~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dvp~~ 451 (501)
T 3st8_A 375 GTKVPHLTYVGDADIGEYSNIGASSVFVNYDG---TSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPG 451 (501)
T ss_dssp TCEEEESCEEESEEECSSCEECTTCEEECBCS---SSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTT
T ss_pred CcEEeccceecCceEcCCCEECCCEEEEcccC---CcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcccCCC
Confidence 99999999999999999999999998865211 111 1788888888888777 688999999999999987
Q ss_pred cc
Q 015259 408 II 409 (410)
Q Consensus 408 ~~ 409 (410)
-+
T Consensus 452 ~l 453 (501)
T 3st8_A 452 AL 453 (501)
T ss_dssp CE
T ss_pred Ce
Confidence 53
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=357.74 Aligned_cols=353 Identities=20% Similarity=0.331 Sum_probs=269.7
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|+||||||| .|+||+|+|...||+|+|++|+|||+|+++.|.+ ++|++.+. +.+++++.. .++.++
T Consensus 1 m~aiIlA~G--~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~----~~i~~~ 71 (401)
T 2ggo_A 1 MKAFILAAG--SGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKL----KEISIV 71 (401)
T ss_dssp CEEEEECCC--CCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHC----TTCEEE
T ss_pred CeEEEEcCc--CccccCcccCCCCcceeeECCEeHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccC----CcEEEE
Confidence 689999999 9999999999999999999999999999999875 67776654 566665421 145666
Q ss_pred eCCC-CCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--CChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 84 REDK-PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 84 ~~~~-~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
.+.. ..|++++++.+++ .++|++++||+++. .++.++++ .+++++++.+. +++..|+.+..+ +
T Consensus 72 ~~~~~~~g~~~~l~~~~~------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~--~~~~~~~~v~~~-~ 137 (401)
T 2ggo_A 72 TQKDDIKGTGAAILSAKF------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKV--SNPKDYGVLVLD-N 137 (401)
T ss_dssp ECCTTCCBSTTTGGGCCC------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEEC--SCCSSSCEEEEC-T
T ss_pred eCCCCCCChHHHHHHhcc------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEc--CCCcceeEEEEC-C
Confidence 6555 6788888876544 27899999999975 44666654 35667777776 556678888887 5
Q ss_pred CCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
++++..+.++|..+.+.+.++|+|+|++++|+.+++.... ..+.+++ .++++.+ +
T Consensus 138 ~g~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~-----------------------~~~~~~~-~~~~~~~-~ 192 (401)
T 2ggo_A 138 QNNLSKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISIS-----------------------ERGELEL-TDAINLM-A 192 (401)
T ss_dssp TSSEEEEECSCSSCSCSEEEEEEEEEETHHHHHHHHSCCC-----------------------SSSCBCH-HHHHHHH-H
T ss_pred CCeEEEEEECCCCCCCcEEEEEEEEEcHHHHHHhhhcCcC-----------------------CCCceEH-HHHHHHH-H
Confidence 6899999999877778899999999999999887643211 0122334 6777776 4
Q ss_pred C-CceeEEeccceeeecCCccchhhhhHHHHhhhhhcC-CCcccCC----------CC---CCCcEEccCeEECCCCEEC
Q 015259 241 K-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTS-PNLLASG----------DG---TKNATIIGDVYVHPSAKIH 305 (410)
Q Consensus 241 ~-~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~-~~~~~~~----------~~---~~~~~i~~~~~i~~~~~i~ 305 (410)
. .++..+..+++|.+++||+||.+++..++.++.... ...+.+. .+ ..++.+.++++||+++.|+
T Consensus 193 ~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~ 272 (401)
T 2ggo_A 193 KDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIG 272 (401)
T ss_dssp HHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEEC
T ss_pred CCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEEC
Confidence 4 478999888899999999999999998877644110 0111110 00 1456667778888888888
Q ss_pred CCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCC----CCcc----------
Q 015259 306 PTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGD----FNAK---------- 371 (410)
Q Consensus 306 ~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~----~~~~---------- 371 (410)
++|.|+++++||++|.|+++|.|.+++|++++.|++++.|.+++|+++|.||+++.|.+... ++..
T Consensus 273 ~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 352 (401)
T 2ggo_A 273 PNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGR 352 (401)
T ss_dssp SSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSC
T ss_pred CCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEcCcccCCCceeEEECCceEEecc
Confidence 88888888999999999999999999999999999999999999999999999999973111 1000
Q ss_pred -eeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 372 -LGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 372 -~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
.+.++||++|+||++++| .+++|++|++|.+++|+..+
T Consensus 353 ~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~vp~~~~ 398 (401)
T 2ggo_A 353 RKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRDVGYGEF 398 (401)
T ss_dssp SSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTCE
T ss_pred cccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccccCCCcE
Confidence 012788888888888877 57888899999999988754
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-43 Score=346.46 Aligned_cols=356 Identities=21% Similarity=0.305 Sum_probs=248.9
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+|.||||||| .|+||++ .+||+|+|++|+|||+|+++.|.+ ++|++.+..+.+.++++. . .+.+
T Consensus 8 ~~~aiIlA~G--~g~Rl~~---~~pK~l~~i~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~----~--~~~~ 76 (459)
T 4fce_A 8 SMSVVILAAG--KGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLAD----P--SLNW 76 (459)
T ss_dssp CEEEEEEECC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-----------CE
T ss_pred cceEEEECCC--CCccCCC---CCCcccCeeCCeeHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc----C--CcEE
Confidence 7999999999 9999998 789999999999999999999986 777777767777776653 1 3556
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+.+....|++++++.+++++.. .++|++++||.+ ...++.++++.|.+ .+++++..+. +++..|+.+..+
T Consensus 77 v~~~~~~g~~~~i~~~~~~~~~--~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~--~~~~~~g~v~~~-- 148 (459)
T 4fce_A 77 VLQAEQLGTGHAMQQAAPHFAD--DEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKL--DNPSGYGRIVRE-- 148 (459)
T ss_dssp EECSSCCCHHHHHHHHGGGSCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEEC--SCCTTSCEEEEE--
T ss_pred EeCCCCCCcHHHHHHHHHhcCC--CCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEec--CCCCcccEEEeC--
Confidence 6677788999999999998852 378999999995 35668999988764 4566676666 566789988887
Q ss_pred CCcEEEEecCCC----CccccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 161 TNELLHYTEKPE----TFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 161 ~~~v~~i~ekp~----~~~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
++++..+.++|. ...+.+.++|+|+|+++.+ +.+....... ..+.+.+ .|++
T Consensus 149 ~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~----------------------~~~~~~~-~d~~ 205 (459)
T 4fce_A 149 NGDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNN----------------------AQGEFYI-TDII 205 (459)
T ss_dssp TTEEEEEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHHTCCCCS----------------------TTCSCCT-THHH
T ss_pred CCcEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHHhCccc----------------------cCCcEEH-HHHH
Confidence 679999998753 3456789999999999865 6655432110 1122334 7888
Q ss_pred ccccCC-CceeEEecccee--eecCCccchhhhhHHHHhhhhhc----CCCcccCCCCCCCcEEccCeEECCCCEECCCc
Q 015259 236 SPLAGK-KQLYTYETMDFW--EQIKTPGMSLKCSGLYLAQFRLT----SPNLLASGDGTKNATIIGDVYVHPSAKIHPTA 308 (410)
Q Consensus 236 ~~l~~~-~~i~~~~~~g~~--~~i~t~~~~~~an~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~ 308 (410)
+.+.+. ..++.+..+++| .+|+||+||..++..+..+.... ...+. .+....+.+++.|++++.|+++|
T Consensus 206 ~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~----~p~~~~~~~~~~ig~~~~i~~~~ 281 (459)
T 4fce_A 206 ALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLL----DPSRFDLRGELTHGRDITIDTNV 281 (459)
T ss_dssp HHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEES----CGGGEEEEEEEEECSSCEECTTE
T ss_pred HHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEe----CCCeEEEeCcEEECCCcEECCCe
Confidence 877765 489999988765 66999999999987765543221 11111 12234455556666666666666
Q ss_pred EECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCC---------------------
Q 015259 309 KIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGD--------------------- 367 (410)
Q Consensus 309 ~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~--------------------- 367 (410)
.|.+++.||++|.|++++.|.+++||++|.|+++|+|.+++|+++|.|++++.|.++..
T Consensus 282 ~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~ 361 (459)
T 4fce_A 282 IIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKG 361 (459)
T ss_dssp EEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEEEECTT
T ss_pred eeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEeeeEEcCC
Confidence 66556666666666666666666666666666666665555555555555554442110
Q ss_pred ---------------CCcce-------------e-eeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 368 ---------------FNAKL-------------G-ITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 368 ---------------~~~~~-------------~-~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.... + .++||++|+||.+++| .+|+|++|++|+.++|+..+
T Consensus 362 ~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV~~~v~~~~~ 439 (459)
T 4fce_A 362 SKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTRDVAENEL 439 (459)
T ss_dssp CEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCE
T ss_pred CEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEccccCCCCE
Confidence 00000 0 2788888888888888 68889999999999988754
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=343.66 Aligned_cols=358 Identities=20% Similarity=0.305 Sum_probs=235.6
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
.-+||||||| .|+||++ ..||+|+|++|+|||+|+++.|.+ ++|++.+..+.+.+++.+ .+.+
T Consensus 11 ~~~~vIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~-------~i~~ 78 (468)
T 1hm9_A 11 SNFAIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG-------QTEF 78 (468)
T ss_dssp CEEEEEECCC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS-------SSEE
T ss_pred CCcEEEEcCC--CCccCCC---CCCcEeeEECCccHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC-------CcEE
Confidence 3589999999 9999986 789999999999999999999876 777776666666554432 4566
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+.+....|++++++.+++++.. ..++|++++||.+ ...++.++++.|++.+++++++..+. +++..|+.+..| +
T Consensus 79 v~~~~~~G~~~sl~~a~~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~--~~~~~~g~v~~d-~ 154 (468)
T 1hm9_A 79 VTQSEQLGTGHAVMMTEPILEG-LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAET--DNPFGYGRIVRN-D 154 (468)
T ss_dssp EECSSCCCHHHHHHTTHHHHTT-CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEEC--SCCTTSCEEEEC-T
T ss_pred EeCCccCChHHHHHHHHHHhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEecc--CCCCceeEEEEC-C
Confidence 6677788999999999998852 1378999999996 35679999999988888888888776 566779998888 6
Q ss_pred CCcEEEEecCCC----CccccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 161 TNELLHYTEKPE----TFVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 161 ~~~v~~i~ekp~----~~~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
+++|..+.|+|. ...+.+.++|+|+|+++. ++.+.+..... ..+.+.+ .|++
T Consensus 155 ~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~----------------------~~~~~~~-~d~~ 211 (468)
T 1hm9_A 155 NAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNN----------------------AQGEYYI-TDVI 211 (468)
T ss_dssp TCCEEEEECTTTCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCSCS----------------------TTCSCCT-THHH
T ss_pred CCCEEEEEECCCCChHHhcCeEEEEEEEEEEHHHHHHHHHhhcccc----------------------CCCeEEH-HHHH
Confidence 789999999864 234678999999999984 56665432110 0012224 7888
Q ss_pred ccccCCC-ceeEEeccceeee--cCCccchhhhhHHHHhhhhhc----CCCcccCCCCCCCcEEccCeEECCCCEECCCc
Q 015259 236 SPLAGKK-QLYTYETMDFWEQ--IKTPGMSLKCSGLYLAQFRLT----SPNLLASGDGTKNATIIGDVYVHPSAKIHPTA 308 (410)
Q Consensus 236 ~~l~~~~-~i~~~~~~g~~~~--i~t~~~~~~an~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~ 308 (410)
+.+++.+ +++++..+|+|.+ ++|++||.+++..+..+.... ...++.+ ....+.+++.|++++.|++++
T Consensus 212 ~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~i~~~~~i~~~~ 287 (468)
T 1hm9_A 212 GIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNP----EATYIDIDVEIAPEVQIEANV 287 (468)
T ss_dssp HHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCG----GGCEECTTCEECTTCEECSSC
T ss_pred HHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECC----CeeEECCCcEECCCCEECCCc
Confidence 8887654 8999999999977 559999999998776543211 1111111 112223333333333333333
Q ss_pred EECCC-----------------cEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcE---------
Q 015259 309 KIGPN-----------------VSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSR--------- 361 (410)
Q Consensus 309 ~i~~~-----------------~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~--------- 361 (410)
.|.++ +.||++|.|+ ++.|.+++||++|.|+++|.|. +++|++++.||+++.
T Consensus 288 ~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~ 366 (468)
T 1hm9_A 288 ILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGEN 366 (468)
T ss_dssp EEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTT
T ss_pred EECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCC
Confidence 33333 3344444444 4444444445555554444444 344444333322221
Q ss_pred -------------------EccCCC---CCcc-eeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 362 -------------------VQAEGD---FNAK-LGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 362 -------------------i~~~~~---~~~~-~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
|+.+.. +... ...++||++|+||++++| .+++|+++++|..++++..+
T Consensus 367 ~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~v~~~v~~~~~ 444 (468)
T 1hm9_A 367 TKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAI 444 (468)
T ss_dssp CEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCE
T ss_pred cEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEECCCCEECCCCCCCCE
Confidence 111100 0000 013788888888888876 57788888888888887654
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-41 Score=331.86 Aligned_cols=356 Identities=20% Similarity=0.288 Sum_probs=254.4
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
++.||||||| .|+||++ ..||+|+|++|+|||+|+++.|.+ ++|++.+..+.+.+++.+ + .+.+
T Consensus 5 ~~~aiIlA~G--~g~Rl~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~----~--~~~~ 73 (456)
T 2v0h_A 5 ALSAVILAAG--KGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLAN----E--QVNW 73 (456)
T ss_dssp CEEEEEECCC--CCGGGCS---SSCGGGSEETTEEHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTT----C--CCEE
T ss_pred cceEEEECCC--CCcccCC---CCCccccEECCccHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhc----C--CcEE
Confidence 6899999999 9999986 789999999999999999999876 777777666667666543 1 3566
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+.+++..|++++++.+++++.. .++|++++||.++ ..++.++++.|.+ ++++++..+. +++..|+.+..+
T Consensus 74 v~~~~~~g~~~~~~~~~~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~--~~~~~~g~v~~~-- 145 (456)
T 2v0h_A 74 VLQTEQLGTAHAVQQAAPFFKD--NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNL--DNPTGYGRIIRE-- 145 (456)
T ss_dssp EECSCCCCHHHHHHHHGGGCCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEEC--SSCTTSCEEEEE--
T ss_pred EeCCCCCCcHHHHHHHHHhcCC--CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeec--CCCCccceEEEc--
Confidence 6677788999999999888842 3789999999963 5668999988865 5667777666 556678888776
Q ss_pred CCcEEEEecCCCC----ccccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 161 TNELLHYTEKPET----FVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 161 ~~~v~~i~ekp~~----~~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
++++..+.|+|.. ....+.++|+|+|+++. ++.++...... ..+.+.+ .|++
T Consensus 146 ~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~----------------------~~~~~~~-~d~~ 202 (456)
T 2v0h_A 146 NGNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNN----------------------AQGEYYL-TDLI 202 (456)
T ss_dssp TTEEEEEECTTTCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCS----------------------TTCCCCG-GGHH
T ss_pred CCcEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHHHhcccc----------------------ccccEEH-HHHH
Confidence 5789999988652 23568899999999985 46665432110 0122334 7888
Q ss_pred ccccCC-CceeEEeccce--eeecCCccchhhhhHHHHhhhhhc----CCCcccCCCCCCCcEEccCeEECCCCEECCCc
Q 015259 236 SPLAGK-KQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRLT----SPNLLASGDGTKNATIIGDVYVHPSAKIHPTA 308 (410)
Q Consensus 236 ~~l~~~-~~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~ 308 (410)
+.+.+. .++..+..+++ |.+++||+||.+++..+..+.... ...+.. +..+.+.+++.||+++.|++++
T Consensus 203 ~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~----~~~~~i~~~~~ig~~~~I~~~~ 278 (456)
T 2v0h_A 203 ALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYD----PARFDLRGTLEHGKDVEIDVNV 278 (456)
T ss_dssp HHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESC----GGGEEEEEEEEECSSCEECSSE
T ss_pred HHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEC----CCccEEcCceEECCCCEEcCCc
Confidence 877655 47888988665 568999999999988765442211 111111 1245666777777777777777
Q ss_pred EECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCC---------------------
Q 015259 309 KIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGD--------------------- 367 (410)
Q Consensus 309 ~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~--------------------- 367 (410)
.|++++.||++|.|+++|.|.+++||++|.|+++++|.+++|++++.|++++.|.++..
T Consensus 279 ~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~ 358 (456)
T 2v0h_A 279 IIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKG 358 (456)
T ss_dssp EEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEESCEECTT
T ss_pred EEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEeccEECCC
Confidence 77777777777777777777777777777777777777666666666666555543210
Q ss_pred ---------------CCcce--------------eeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 368 ---------------FNAKL--------------GITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 368 ---------------~~~~~--------------~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.... ..++||++|+||++++| .+++|+++++|..++++..+
T Consensus 359 ~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s~v~~~v~~~~~ 436 (456)
T 2v0h_A 359 SKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRDVGENEL 436 (456)
T ss_dssp CEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTTCEECSCBCTTCE
T ss_pred CEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCCCEECCCcCCCCE
Confidence 00000 03788888888888887 46777888888888877643
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=267.49 Aligned_cols=234 Identities=21% Similarity=0.344 Sum_probs=194.7
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc---c----
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN---E---- 75 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~---~---- 75 (410)
.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.+++.+... .
T Consensus 2 ~~~avIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 79 (281)
T 3juk_A 2 IKKCLFPAAG--YGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGT 79 (281)
T ss_dssp CCEEEEECCS--CCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------C
T ss_pred ceEEEEECCc--CCcccCccccCCCcccceECCEEHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhcc
Confidence 5899999999 9999999999999999999999999999999987 777777777888888764210 0
Q ss_pred -------------CCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-----hHHHHHHHHhcCCce
Q 015259 76 -------------LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-----LPEMLDAHRNYGGMG 137 (410)
Q Consensus 76 -------------~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-----l~~~l~~~~~~~~~~ 137 (410)
++.++.++.+.+..|++++++.+++++. +++|+|++||.+++.+ +.++++.|.+.++ .
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~---~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~ 155 (281)
T 3juk_A 80 NKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG---NEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-S 155 (281)
T ss_dssp CHHHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHC---SSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-C
T ss_pred cchhhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcC---CCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-C
Confidence 2456777888888999999999999985 3789999999998877 9999999988776 6
Q ss_pred EEEEEecCcccccccceEEEcCC--CC--cEEEEecCCC--CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccc
Q 015259 138 TILVIKVSAESASQFGELVADPD--TN--ELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVS 211 (410)
Q Consensus 138 ~l~~~~~~~~~~~~~~~v~~d~~--~~--~v~~i~ekp~--~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~ 211 (410)
++++...+.+++..||++..+ + ++ +|..|.|||. ...+.++++|+|+|++++|+.+.+....
T Consensus 156 ~v~~~~~~~~~~~~~g~v~~~-~~~~g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l~~l~~~~~~----------- 223 (281)
T 3juk_A 156 IVAIEEVALEEVSKYGVIRGE-WLEEGVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPG----------- 223 (281)
T ss_dssp EEEEEECCTTTGGGSEEEEEE-EEETTEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHHHHHHTCCCC-----------
T ss_pred EEEEEEechhhcccCCEEEec-cCCCCceEEeEEEECcCCCCCCcceeEEEEEEECHHHHHHHHhcCCC-----------
Confidence 777776655667889999887 4 56 9999999986 4567899999999999999888753211
Q ss_pred hhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhh
Q 015259 212 SFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQ 272 (410)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~ 272 (410)
..+.+++ .|+++.+++++.+++|..+|+|.+||||++|.+|++.++..
T Consensus 224 ------------~~~e~~l-~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 224 ------------KNNEIQI-TDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp ------------GGGSCCH-HHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred ------------CCCceeH-HHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 0133446 89999988878999999999999999999999999988764
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=259.05 Aligned_cols=231 Identities=20% Similarity=0.327 Sum_probs=195.3
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEeccc-chHHHHHHHHhhcccCCccE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSISNELRIPV 80 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~-~~~~i~~~~~~~~~~~~~~i 80 (410)
+.|+||||||| .|+||+|+|...||+|+|++|+|||+|+++.+.+ |+|++.+ ..+.+.++++.. ..|+.++
T Consensus 23 ~~m~aiIlAaG--~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~~-~~~~~~i 99 (269)
T 4ecm_A 23 NAMKGIILAGG--TGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGSG-QEFGVSF 99 (269)
T ss_dssp -CEEEEEECCS--CCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTCEE
T ss_pred cCcEEEEECCC--CccccccccCCCCceecEECCEEHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhhc-cccCceE
Confidence 36899999999 9999999999999999999999999999999986 6666654 345677777653 4577788
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
.++.+....|++++++.+++++. .++|++++||.++..++.++++.|.++++++++++.+. +++..|+++..+
T Consensus 100 ~~~~~~~~~G~~~al~~a~~~~~---~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d-- 172 (269)
T 4ecm_A 100 TYRVQDKAGGIAQALGLCEDFVG---NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSV--DDPERFGVANIQ-- 172 (269)
T ss_dssp EEEECSSCCCHHHHHHTTHHHHT---TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEEC--SCGGGSEEEEEE--
T ss_pred EEeeCCccCcHHHHHHHHHHhcC---CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEEC--CCCCCceEEEEc--
Confidence 88888888999999999999885 47899999999999999999999988888888888887 567789999887
Q ss_pred CCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
+++|..+.|||..+.+.++++|+|+|++++|+.+.+.... ..+.+.+ .++++.+++
T Consensus 173 ~g~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~-----------------------~~ge~~l-~d~l~~l~~ 228 (269)
T 4ecm_A 173 NRKIIEIEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPS-----------------------ARGELEI-TDINNWYLK 228 (269)
T ss_dssp TTEEEEEEESCSSCSCSEEEEEEEEECTTHHHHHTSCCBC-----------------------TTSCBCH-HHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCcEEEEEEEEECHHHHHhhhhcCCC-----------------------CCCeeeH-HHHHHHHHH
Confidence 4899999999987778899999999999999888753211 1133445 889998888
Q ss_pred CCceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 241 KKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 241 ~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
++.+.++..+++|.+|+||++|.+++..+++
T Consensus 229 ~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~~ 259 (269)
T 4ecm_A 229 RGVLTYNEMSGWWTDAGTHVSLQRANALARD 259 (269)
T ss_dssp TTCEEEEECCSCEEECSSHHHHHHHHHHTTT
T ss_pred cCCEEEEEeCCEEEeCCCHHHHHHHHHHHHh
Confidence 7899999999999999999999999987654
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=257.20 Aligned_cols=239 Identities=21% Similarity=0.284 Sum_probs=188.2
Q ss_pred CCCCCCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc-
Q 015259 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN- 74 (410)
Q Consensus 1 ~~~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~- 74 (410)
|.+.|++.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.+++.....
T Consensus 1 ~~~~~~~~~~avIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l 78 (302)
T 2e3d_A 1 MAAINTKVKKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFEL 78 (302)
T ss_dssp ----CCSCCEEEEECCS--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHH
T ss_pred CcchhhcccEEEEECCc--CcccCCccccCCCceeeEECCeEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhh
Confidence 77788888999999999 9999999999999999999999999999999876 777777766788888764100
Q ss_pred --------------------cCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC-----C---ChHHH
Q 015259 75 --------------------ELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-----F---PLPEM 126 (410)
Q Consensus 75 --------------------~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~-----~---~l~~~ 126 (410)
.++.++.++.+....|++++++.+++++. +++|++++||++++ . ++.++
T Consensus 79 ~~~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~l~~l 155 (302)
T 2e3d_A 79 EAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLAEM 155 (302)
T ss_dssp HHHHC----CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHC---SSCEEEECTTEEECTTSSCTTTSTHHHH
T ss_pred hhhhhhccchhhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcC---CCcEEEEcCCccccCccccchHHHHHHH
Confidence 13556777777888999999999999885 36899999999986 2 79999
Q ss_pred HHHHHhcCCceEEEEEecCcccccccceEEEcC---CCC---cEEEEecCCC--CccccceeeeEEEEcHHHHHHhhhcc
Q 015259 127 LDAHRNYGGMGTILVIKVSAESASQFGELVADP---DTN---ELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVS 198 (410)
Q Consensus 127 l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~---~~~---~v~~i~ekp~--~~~~~l~~~Giy~~~~~~~~~l~~~~ 198 (410)
++.|.+.++ +++++.+. +++..||++..+. +++ +|..|.|||. ...+.+.++|+|+|++++|+.+.+..
T Consensus 156 ~~~~~~~~~-~~i~~~~~--~~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~ 232 (302)
T 2e3d_A 156 IRRFDETGH-SQIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTP 232 (302)
T ss_dssp HHHHHHHCC-EEEEEEEC--SCGGGSEEEECTTCCCCTTCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHHHHHTCCC
T ss_pred HHHHHhcCC-cEEEEEEc--cCCCCccEEEecccccCCCCceeEEEEEECCCCCccccceEEEEEEEECHHHHHHHHhhC
Confidence 999987666 67777766 5667899887630 245 8999999985 45577899999999999998886532
Q ss_pred cccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 199 SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
... .+.+.+ .++++.+++++.+++++..++|.|||||++|.+++..++.
T Consensus 233 ~~~-----------------------~~~~~l-~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~ 281 (302)
T 2e3d_A 233 PGA-----------------------GDEIQL-TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGI 281 (302)
T ss_dssp C---------------------------CCCH-HHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHH
T ss_pred CCC-----------------------CCceeh-HHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHh
Confidence 110 012234 7888888776799999999999999999999999976654
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=250.45 Aligned_cols=235 Identities=20% Similarity=0.263 Sum_probs=168.6
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhc--------
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS-------- 73 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~-------- 73 (410)
..|+||||||| .|+||+|+|...||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.++++...
T Consensus 13 ~~~~avIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~ 90 (297)
T 2ux8_A 13 PLRKAVFPVAG--LGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAA 90 (297)
T ss_dssp CCCEEEEEECC--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHT
T ss_pred CccEEEEECCC--CccccCccccCCCceeeeECCeEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhh
Confidence 36999999999 9999999999999999999999999999999876 77777766677887765310
Q ss_pred -----------ccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC---CChHHHHHHHHhcCCceEE
Q 015259 74 -----------NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS---FPLPEMLDAHRNYGGMGTI 139 (410)
Q Consensus 74 -----------~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~---~~l~~~l~~~~~~~~~~~l 139 (410)
..++.++.++.+....|++++++.+++++. +++|++++||++++ .++.++++.|.+.++ .++
T Consensus 91 ~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~---~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i 166 (297)
T 2ux8_A 91 RGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVG---DEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLI 166 (297)
T ss_dssp TTCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHC---SSCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEE
T ss_pred ccchhhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcC---CCcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEE
Confidence 003456777777788999999999999885 37899999999976 569999999987665 466
Q ss_pred EEEecCcccccccceEEEcC-CCC--cEEEEecCCC--CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhH
Q 015259 140 LVIKVSAESASQFGELVADP-DTN--ELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFE 214 (410)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~d~-~~~--~v~~i~ekp~--~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 214 (410)
++.....+++..|+++..+. +++ +|..|.|||. ...+.+.++|+|+|++++|+.+.+.....
T Consensus 167 ~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~------------- 233 (297)
T 2ux8_A 167 CAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGA------------- 233 (297)
T ss_dssp EEC-----------CCCCCCBCSSEEEC--------------CCCEEEEEEECTHHHHHHHHTC----------------
T ss_pred EEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhhCCCC-------------
Confidence 55554334556788876651 134 8999999874 44567899999999999988887533110
Q ss_pred hhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 215 ALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
.+.+.+ .++++.+++++.+++++.+++|.+|||+++|.+++..++.
T Consensus 234 ----------~~~~~l-~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~ 279 (297)
T 2ux8_A 234 ----------GGEIQL-TDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVAL 279 (297)
T ss_dssp ---------------C-CTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHHH
T ss_pred ----------CCeeEH-HHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHHh
Confidence 022334 7888888887899999999999999999999999987764
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=248.18 Aligned_cols=238 Identities=18% Similarity=0.197 Sum_probs=187.0
Q ss_pred CCCCceEEEEEecCCCCCCccccCCCCCCcccccc--CCccchhhhHhhccc-----EEEecccc-hHHHHHHHHhhccc
Q 015259 4 SEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL--GGQPMVHHPISACKR-----IYLVGFYE-EREFALYVSSISNE 75 (410)
Q Consensus 4 ~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi--~g~pli~~~l~~l~~-----i~vv~~~~-~~~i~~~~~~~~~~ 75 (410)
+|| +|++|||||| .|+||+| ||+|+|+ +|+|||+|+++.+.+ |+|++.+. .+.+.+++.+. ..
T Consensus 2 ~~m-~~~~vIlAaG--~g~R~~~-----~K~l~~ig~~g~pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~-~~ 72 (303)
T 3pnn_A 2 NAM-KPTLFVLAAG--MGSRYGS-----LKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTK-YE 72 (303)
T ss_dssp -CC-CCEEEEECTT--CBCTTSS-----BCCCCCCSTTSCCHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHH-HT
T ss_pred CCC-ceEEEEECCC--CcccCCC-----CceEeEcCCCCeeHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHH-hc
Confidence 454 5899999999 9999999 7999999 599999999998876 66666666 47888888764 34
Q ss_pred CCccEEEeeCC---------------CCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHh---cCCc
Q 015259 76 LRIPVRYLRED---------------KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN---YGGM 136 (410)
Q Consensus 76 ~~~~i~~i~~~---------------~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~---~~~~ 136 (410)
|+.++.++.+. +..|++++++++++++. ++|+|++||.+++.+ +.+++++|.+ .+++
T Consensus 73 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~----~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~ 148 (303)
T 3pnn_A 73 GRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR----EPFAVINADDFYGRNGFEVLARKLMTLEGKQGE 148 (303)
T ss_dssp TTSCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC----SCEEEEESSCBCCHHHHHHHHHHHHTTTTCSSE
T ss_pred cCCcEEEEecccccccccccccccccccCCcHHHHHHHHHhcC----CCEEEEECCeecCHHHHHHHHHHHHHhccccCc
Confidence 56677777665 67899999999999884 789999999998776 9999999975 5678
Q ss_pred eEEEEEecCcccc-ccc-----ceEEEcCCCCcEEEEecCCCC-------------------ccccceeeeEEEEcHHHH
Q 015259 137 GTILVIKVSAESA-SQF-----GELVADPDTNELLHYTEKPET-------------------FVSDLINCGVYVFTPDIF 191 (410)
Q Consensus 137 ~~l~~~~~~~~~~-~~~-----~~v~~d~~~~~v~~i~ekp~~-------------------~~~~l~~~Giy~~~~~~~ 191 (410)
+++++.+. +++ +.| |++..| ++++|..|.|||.. +.+.++++|+|+|++++|
T Consensus 149 ~~v~~~~~--~~~~~~~g~~~~G~v~~d-~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~ 225 (303)
T 3pnn_A 149 YCMVGYRV--GNTLSESGGVSRGVCQVD-EKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYF 225 (303)
T ss_dssp EEEEEEEG--GGSCBTTBCEEEEEEEEC-TTSBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHH
T ss_pred eEEEEEEC--CCccCccCceeeeeEeeC-CCCcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHH
Confidence 88888887 444 556 577887 67899999999853 357899999999999999
Q ss_pred HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC--ceeEEeccceeeecCCccchhhhhHHH
Q 015259 192 NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK--QLYTYETMDFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 192 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~--~i~~~~~~g~~~~i~t~~~~~~an~~~ 269 (410)
+.+...+.....+. ..+ ..+.+.+ +|+++.+++++ ++++++.+|+|.+|+|+++|.++++.+
T Consensus 226 ~~l~~~~~~~l~~~--------------~~~-~~~e~~l-~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l 289 (303)
T 3pnn_A 226 DYSEELFINFLNAH--------------GQE-PKSEFFI-PFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKL 289 (303)
T ss_dssp HHHHHHHHHHHHHH--------------TTC-SSCCCCH-HHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--------------CCC-cCCcEEh-HHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHH
Confidence 88875322111100 011 1233445 89999988776 799999999999999999999999887
Q ss_pred Hhhh
Q 015259 270 LAQF 273 (410)
Q Consensus 270 ~~~~ 273 (410)
.+..
T Consensus 290 ~~~~ 293 (303)
T 3pnn_A 290 RELT 293 (303)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=241.82 Aligned_cols=231 Identities=19% Similarity=0.299 Sum_probs=188.0
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEec-ccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~-~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
+|++|||||| .|+||+|+|...||+|+|++|+|||+|+++.+.. |+|++ .++.+.+.++++++ ++|+.++.
T Consensus 2 ~~~aIILAgG--~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g-~~~g~~i~ 78 (293)
T 1fxo_A 2 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDG-SNWGLDLQ 78 (293)
T ss_dssp CEEEEEECCC--CCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTCEEE
T ss_pred CceEEEECCC--CCCcCccccCCCCceeCeECCEeHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhcc-cccCceEE
Confidence 5899999999 9999999999999999999999999999999876 65554 56667788888764 35777788
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
++.++...|++++++.+++++. .++++++.||.++ +.++.++++.|.+.+..++++..++ .++..||++..| +
T Consensus 79 ~~~~~~~~G~~~al~~a~~~i~---~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v--~dp~~~g~v~~d-~ 152 (293)
T 1fxo_A 79 YAVQPSPDGLAQAFLIGESFIG---NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV--LDPERYGVVEFD-Q 152 (293)
T ss_dssp EEECSSCCCGGGHHHHTHHHHT---TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC--SCGGGSEEEEEC-T
T ss_pred EeeCCCCCCHHHHHHHHHHHhC---CCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEEC--CCcccCcEEEEC-C
Confidence 8877888999999999999885 3678888899985 6789999999976666777777776 566789999988 6
Q ss_pred CCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
++++..|.|||..+.+++.++|+|+|++++++.+.+..... .+.+.+ .|+++.+++
T Consensus 153 ~g~v~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~-----------------------~ge~~~-td~~~~~l~ 208 (293)
T 1fxo_A 153 GGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSP-----------------------RGELEI-TDVNRAYLE 208 (293)
T ss_dssp TSCEEEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCT-----------------------TSSCCH-HHHHHHHHH
T ss_pred CCcEEEEEECCCCCCCCeEEEEEEEEcHHHHHHHHhcCccc-----------------------CCceeH-HHHHHHHHh
Confidence 78999999998777788999999999999988776432110 122334 678887777
Q ss_pred CCceeEEecc-ce-eeecCCccchhhhhHHHHh
Q 015259 241 KKQLYTYETM-DF-WEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 241 ~~~i~~~~~~-g~-~~~i~t~~~~~~an~~~~~ 271 (410)
.+.+.++... |+ |.+++|++||.+++..+..
T Consensus 209 ~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 241 (293)
T 1fxo_A 209 RGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIAT 241 (293)
T ss_dssp TTCEEEEECCTTSEEEECCSHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHHH
Confidence 7777777664 75 9999999999999887654
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=238.97 Aligned_cols=231 Identities=18% Similarity=0.294 Sum_probs=186.9
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEec-ccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~-~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
.|++|||||| .|+||+|+|...||+|+|++|+|||+|+++.+.. |+|++ .++.+.+.++++++ ++|+.++.
T Consensus 3 ~m~aIILAgG--~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~g-~~~g~~i~ 79 (295)
T 1lvw_A 3 HMKGIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDG-SQFGVRFS 79 (295)
T ss_dssp SCEEEEECCC--CCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTSEEE
T ss_pred ceEEEEECCC--CCCccccccCCCCceecEECCeeHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhhc-cccCceEE
Confidence 3799999999 9999999999999999999999999999999876 66654 46677888888764 45777788
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
++.+....|++++++.+++++. .++++++.||.++ +.++.++++.|.+.+..++++..++ .++..|+++..| +
T Consensus 80 ~~~~~~~~G~~~al~~a~~~i~---~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v--~dp~~~g~v~~d-~ 153 (295)
T 1lvw_A 80 YRVQEEPRGIADAFIVGKDFIG---DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYV--RDPRPFGVVEFD-S 153 (295)
T ss_dssp EEECSSCCCGGGHHHHTHHHHT---TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEEC--SCCTTSEEEEEC-T
T ss_pred EeeCCCCCChHHHHHHHHHHhC---CCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEEC--CCcccCCEEEEC-C
Confidence 8877778899999999999885 3678888899985 6789999999976666777777776 556679999988 6
Q ss_pred CCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
++++..|.|||..+.++++++|+|+|++++++.+...... ..+.+++ +|+++.+++
T Consensus 154 ~g~v~~~~ekp~~~~s~~~~~Giy~f~~~~l~~~~~~~~~-----------------------~~ge~~~-td~~~~~l~ 209 (295)
T 1lvw_A 154 EGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPS-----------------------DRGELEI-TSVNEEYLR 209 (295)
T ss_dssp TSBEEEEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCC-----------------------TTSCCCH-HHHHHHHHH
T ss_pred CCcEEEEEECCCCCCCCEEEEEeEEEcHHHHHHHHhcCCc-----------------------ccCceeH-HHHHHHHHH
Confidence 7899999999976778899999999999998877643211 0122334 777877777
Q ss_pred CCceeEEecc-ce-eeecCCccchhhhhHHHHh
Q 015259 241 KKQLYTYETM-DF-WEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 241 ~~~i~~~~~~-g~-~~~i~t~~~~~~an~~~~~ 271 (410)
.+.+.++... ++ |.|++|++||.+++..+..
T Consensus 210 ~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (295)
T 1lvw_A 210 MGKLRVELMGRGMAWLDTGTHDGLLEASSFIET 242 (295)
T ss_dssp TTCEEEEEECTTCEECCCSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHHH
Confidence 7777777664 74 9999999999999987654
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=240.75 Aligned_cols=230 Identities=20% Similarity=0.274 Sum_probs=186.9
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEec-ccchHHHHHHHHhhcccCCccEEE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~-~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
|++|||||| .|+||+|+|...||+|+|++|+|||+|+++.+.. |+|++ .++.+.+.++++++ ++|+.++.+
T Consensus 4 m~aIILAgG--~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g-~~~g~~i~~ 80 (296)
T 1mc3_A 4 MKGIILAGG--SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDG-SEFGIQLEY 80 (296)
T ss_dssp CEEEEECCC--CCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTCEEEE
T ss_pred cEEEEECCC--CCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhcc-cccCceEEE
Confidence 799999999 9999999999999999999999999999999875 66654 46677888888764 357777888
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
+.++...|++++++.+++++. +++++++.||.++ +.++.++++.|.+.+..++++..++ .++..||++..| ++
T Consensus 81 ~~~~~~~G~~~al~~a~~~i~---~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v--~dp~~yg~v~~d-~~ 154 (296)
T 1mc3_A 81 AEQPSPDGLAQAFIIGETFLN---GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV--MDPERFGVVEFD-DN 154 (296)
T ss_dssp EECSSCCCSTHHHHHTHHHHT---TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEEC--SCCSSSBBCEEE-TT
T ss_pred eccCCCCCHHHHHHHHHHHhC---CCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEEC--CCcccCCEEEEC-CC
Confidence 777788999999999999885 3678878899885 6789999999976666777777776 566689999888 67
Q ss_pred CcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCC
Q 015259 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (410)
Q Consensus 162 ~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (410)
++|..|.|||..+.++++++|+|+|++++++.+...... ..+.+++ .|+++.+++.
T Consensus 155 g~v~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~-----------------------~~ge~~~-td~~~~~l~~ 210 (296)
T 1mc3_A 155 FRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPS-----------------------ERGELEI-TSINQMYLEA 210 (296)
T ss_dssp EEEEECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCC-----------------------SSSSCCH-HHHHHHHHHT
T ss_pred CcEEEEEECCCCCCCCEEEEEEEEEcHHHHHHHHhcCcc-----------------------ccCCccH-HHHHHHHHhc
Confidence 899999999977778899999999999998877653211 0122334 7788877777
Q ss_pred CceeEEecc-ce-eeecCCccchhhhhHHHHh
Q 015259 242 KQLYTYETM-DF-WEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 242 ~~i~~~~~~-g~-~~~i~t~~~~~~an~~~~~ 271 (410)
+.+.++... ++ |.|+||+++|.+++..+..
T Consensus 211 g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (296)
T 1mc3_A 211 GNLTVELLGRGFAWLDTGTHDSLIEASTFVQT 242 (296)
T ss_dssp TCEEEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 777777664 75 9999999999999987654
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=244.68 Aligned_cols=236 Identities=18% Similarity=0.260 Sum_probs=182.5
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhc---------
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS--------- 73 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~--------- 73 (410)
.|+||||||| .|+||+|+|...||+|+|++|+|||+|+++.+.. |+|++.+..+.+.++++...
T Consensus 12 ~~~aVIlAaG--~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~ 89 (323)
T 2pa4_A 12 VKTVVVPAAG--LGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER 89 (323)
T ss_dssp CCEEEEECCC--CCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHT
T ss_pred ceEEEEECCC--CccccCccccCCCceeeeECCEEHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhcc
Confidence 4899999999 9999999999999999999999999999999876 77777666667777654310
Q ss_pred ---------c--cCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--CChHHHHHHHHhcCCceEEE
Q 015259 74 ---------N--ELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHRNYGGMGTIL 140 (410)
Q Consensus 74 ---------~--~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--~~l~~~l~~~~~~~~~~~l~ 140 (410)
+ .++.++.++.+....|++++++.+++++.. ..+.|+|++||.+++ .++..+++.|.+.++ .+++
T Consensus 90 ~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~-~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~ 167 (323)
T 2pa4_A 90 GKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDD-DEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLC 167 (323)
T ss_dssp TCHHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCS-SCCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEE
T ss_pred chhhhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcC-CCCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEE
Confidence 0 023456777777788999999999888852 123399999999986 569999999987654 4666
Q ss_pred EEecCcccccccceEEEcC---CCC--cEEEEecCCC--CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchh
Q 015259 141 VIKVSAESASQFGELVADP---DTN--ELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSF 213 (410)
Q Consensus 141 ~~~~~~~~~~~~~~v~~d~---~~~--~v~~i~ekp~--~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 213 (410)
+.....++...|+++..+. +++ +|..|.|||. ...+.+.++|+|+|++++|+.+.+.....
T Consensus 168 ~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~------------ 235 (323)
T 2pa4_A 168 AVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGA------------ 235 (323)
T ss_dssp EEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHHHHHHHCCCCG------------
T ss_pred EEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccccccEEEEEEEEECHHHHHHHHhhCCCC------------
Confidence 6665445667899887651 233 8999999984 45567899999999999998886532110
Q ss_pred HhhhhhccCCCCCeeeeccchhccccCC-CceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 214 EALQSATRNLTTDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
.+.+.+ .++++.++++ ..+++++.+++|.+||||++|.+++..++.
T Consensus 236 -----------~ge~~l-~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~ 282 (323)
T 2pa4_A 236 -----------GGELQL-TDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGL 282 (323)
T ss_dssp -----------GGCCCH-HHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHH
T ss_pred -----------CCeEeH-HHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhh
Confidence 022334 7888888766 689999999999999999999999977764
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=235.21 Aligned_cols=224 Identities=22% Similarity=0.407 Sum_probs=168.7
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhc---ccCCc-
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS---NELRI- 78 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~---~~~~~- 78 (410)
+|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.+++++.. ..+..
T Consensus 2 ~~~avIlAaG--~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (259)
T 1tzf_A 2 ASKAVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCEEEEEECS--CC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CcEEEEECCC--CcccCCCccCCCCccccEECCEEHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhccccccccccc
Confidence 5899999999 9999999999999999999999999999999876 77777777778888887531 01110
Q ss_pred ----------------cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEE
Q 015259 79 ----------------PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVI 142 (410)
Q Consensus 79 ----------------~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~ 142 (410)
.+.+..+....|++++++.+++++.. .++|++++||.+++.++.++++.|.+.++.+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~--~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~ 157 (259)
T 1tzf_A 80 MAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD--DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT 157 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTT--SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE
T ss_pred ccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcCC--CCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEe
Confidence 12223345578999999999988841 378999999999888999999999877777666543
Q ss_pred ecCcccccccceEEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccC
Q 015259 143 KVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRN 222 (410)
Q Consensus 143 ~~~~~~~~~~~~v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (410)
..+..|+++..+ +++|..|.|||... ..++++|+|+|++++|+.+..
T Consensus 158 ----~~~~~~g~v~~~--~g~v~~~~ekp~~~-~~~~~~Giy~~~~~~l~~l~~-------------------------- 204 (259)
T 1tzf_A 158 ----FPPGRFGALDIQ--AGQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDN-------------------------- 204 (259)
T ss_dssp ----CCCCCSEEEEEE--TTEEEEEEESCSCC-SCCEECCCEEECGGGGGGCCS--------------------------
T ss_pred ----cCCCCccEEEEc--CCEEEEEEecCCCC-CceEEEEEEEeCHHHHHhhcc--------------------------
Confidence 235679988887 57999999998642 568999999999998865432
Q ss_pred CCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 223 LTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 223 ~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
+...+..++++.+++++.+++++.+++|.+|+|++||.+++..+..
T Consensus 205 ---~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~ 250 (259)
T 1tzf_A 205 ---DATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEK 250 (259)
T ss_dssp ---TTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHT
T ss_pred ---cccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhc
Confidence 0112336777777767789999999999999999999999987764
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=231.04 Aligned_cols=224 Identities=16% Similarity=0.192 Sum_probs=163.9
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCcc--EEE
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIP--VRY 82 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~--i~~ 82 (410)
+|||||| .|+||+|+|..+||+|+|++|+|||+|+|+.+.+ +++++.+..+ +.+++++..++++.+ ..+
T Consensus 2 ~iIlAaG--~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (255)
T 4evw_A 2 IVIPMAG--MSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKATQLGIKQFYIA 78 (255)
T ss_dssp EEEECCS--CCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHHHHTCSSEEEE
T ss_pred EEEEcCC--CCcccccCCCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHHHcCCCCceEE
Confidence 7999999 9999999999999999999999999999999865 5555555444 444544322233321 234
Q ss_pred eeCCCCCCcHHHHHHhHHHhcc---cCCCcEEEEcCCccc-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 83 LREDKPHGSAGALYNFRDLIME---DNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~---~~~~~~lvl~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
+.+....|++++++++++++.. ..+++|+|++||+++ +.++.++ ..+++++++++.. +++ .||++..|
T Consensus 79 ~~~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~--~~p-~yG~v~~d 150 (255)
T 4evw_A 79 ELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQG--GGD-NWSFAKPE 150 (255)
T ss_dssp EESSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEEC--CSS-CSCEEEES
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEec--CCC-ceeEEEEC
Confidence 5578889999999999999821 124689999999998 5566553 2456778888887 344 89999998
Q ss_pred CCCC--cEEEEecCCCCccccceeeeEEEEcHH--HHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccch
Q 015259 159 PDTN--ELLHYTEKPETFVSDLINCGVYVFTPD--IFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (410)
Q Consensus 159 ~~~~--~v~~i~ekp~~~~~~l~~~Giy~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (410)
+++ +|..|.|| ...++++++|+|+|++. +++.+.+...... .. ...+.+.+ .|+
T Consensus 151 -~~g~~~V~~i~EK--~~~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~--~~----------------~~~gE~~l-td~ 208 (255)
T 4evw_A 151 -HAGSTKVIQTAEK--NPISDLCSTGLYHFNRKEDYLEAYREYVARPS--QE----------------WERGELYI-APL 208 (255)
T ss_dssp -STTCCBEEEEESS--SCSSSEEEEEEEEESCHHHHHHHHHHHHTSCG--GG----------------CSCSCCCS-TTH
T ss_pred -CCCCeEEEEEEec--cCccCcEEEeEEEECcHHHHHHHHHHHHhccc--cc----------------ccCCeEeh-HHH
Confidence 567 99999999 34578999999999985 2344443221100 00 00123335 899
Q ss_pred hccccCCC-ceeEEecc-ceeeecCCccchhhhhH
Q 015259 235 LSPLAGKK-QLYTYETM-DFWEQIKTPGMSLKCSG 267 (410)
Q Consensus 235 l~~l~~~~-~i~~~~~~-g~~~~i~t~~~~~~an~ 267 (410)
++.+++.+ .+.++..+ ++|.++|||++|.++..
T Consensus 209 i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~ 243 (255)
T 4evw_A 209 YNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLR 243 (255)
T ss_dssp HHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHh
Confidence 99988655 78999875 99999999999988754
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=227.30 Aligned_cols=245 Identities=15% Similarity=0.197 Sum_probs=150.5
Q ss_pred ceEEEEEecCCCCCCccccCCC-CCCcccccc-CCccchhhhHhhccc----EEEecccc-hHHHHHHHHhhcccCCc-c
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSL-NIPKPLFPL-GGQPMVHHPISACKR----IYLVGFYE-EREFALYVSSISNELRI-P 79 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~-~~pK~llpi-~g~pli~~~l~~l~~----i~vv~~~~-~~~i~~~~~~~~~~~~~-~ 79 (410)
+|+||||||| .|+||+|+|. ..||+|+|+ +|+|||+|+++.+.+ |+|++.+. .+.+.+++++. |+. +
T Consensus 4 ~~~avIlAgG--~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~~~~i~vv~~~~~~~~i~~~~~~~---~~~~~ 78 (308)
T 2qh5_A 4 KIKNILLSGG--SGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASLVDETLIVCNEKHYFLALEEIKNE---IKNKS 78 (308)
T ss_dssp CEEEEEECC---------------CCGGGCTTBTTBCHHHHHHHHHHTTCSEEEEEEEGGGHHHHHHHTTTT---CSSCE
T ss_pred ccEEEEEcCC--CCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHccCCCEEEEEChhHHHHHHHHHHHh---hCCCc
Confidence 6899999999 9999999996 899999999 599999999999875 66666654 35666666531 565 5
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCC-hHHHHHH---HHhcCCceEEEEEecCcccccccce
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEMLDA---HRNYGGMGTILVIKVSAESASQFGE 154 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~-l~~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~ 154 (410)
+.++.++...|++++++.+++++. .++.|++++||.++ +.+ +.++++. |.+.++.+++.+.+. .....||+
T Consensus 79 ~~~i~~~~~~gt~~al~~a~~~l~--~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~g~ 154 (308)
T 2qh5_A 79 VGFLLESLSKNTANAIALSALMSD--KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSID--KPNTEFGY 154 (308)
T ss_dssp EEEEEESSCCCHHHHHHHHHHTSC--TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECS--SCCTTSEE
T ss_pred cEEEeCCCCCChHHHHHHHHHHhC--CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecC--CCCCCceE
Confidence 677777788899999999998873 12359999999997 555 8899987 666677778877765 44567999
Q ss_pred EEEcCCCCcEEEEecCCCCcc--------ccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccC--C
Q 015259 155 LVADPDTNELLHYTEKPETFV--------SDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRN--L 223 (410)
Q Consensus 155 v~~d~~~~~v~~i~ekp~~~~--------~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 223 (410)
+..+ ++++|..|.|||.... +.++++|+|+|+++.| +.+.+......+..... ....... .
T Consensus 155 i~~d-~~~~V~~~~Ekp~~~~~~~~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~-------~~~~~~~~~~ 226 (308)
T 2qh5_A 155 IESP-NGLDVKRFIEKPSLDKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERA-------FESLENAYFF 226 (308)
T ss_dssp EECS-SSSBCSEEEESCCHHHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHH-------GGGCEEECCS
T ss_pred EEEC-CCCEEEEEEECCChHHHHHHhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHH-------hhcccccccc
Confidence 9877 5689999999986421 4688999999999874 66654322111000000 0000000 0
Q ss_pred CCCeeeeccchhc--------c-ccCC-CceeEEeccceeeecCCccchhhhhHHH
Q 015259 224 TTDFVRLDQDILS--------P-LAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 224 ~~~~~~l~~d~l~--------~-l~~~-~~i~~~~~~g~~~~i~t~~~~~~an~~~ 269 (410)
+.+..++..++++ . ++++ ..+++++.+++|.+|||+++|.+++..-
T Consensus 227 e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 227 EKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp SSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred chhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence 0011112224333 2 4544 5899999999999999999999987543
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=211.75 Aligned_cols=219 Identities=15% Similarity=0.184 Sum_probs=153.1
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+|.||||||| .|+||+|+|...||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.++.+ .|+..+..
T Consensus 25 ~~~aiIlAaG--~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~----~~~~~iv~ 98 (254)
T 1jyk_A 25 RVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKE----KYGVRLVF 98 (254)
T ss_dssp CCEEEEEECS--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHH----HHCCEEEE
T ss_pred CceEEEECCC--CcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHH----hCCcEEEE
Confidence 6899999999 9999999999999999999999999999999875 67776655555555443 24433333
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCceEEEEEecCcccc-cccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVIKVSAESA-SQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~d~~ 160 (410)
..+....|++++++.+++.+. ++++++||+++..+ +..+ .+.+..+++ .. .++ ..|+++ .| +
T Consensus 99 ~~~~~~~g~~~al~~a~~~~~-----~~lv~~~D~~~~~~~~~~~----~~~~~~~t~---~~--~~~~~~~~v~-~d-~ 162 (254)
T 1jyk_A 99 NDKYADYNNFYSLYLVKEELA-----NSYVIDADNYLFKNMFRND----LTRSTYFSV---YR--EDCTNEWFLV-YG-D 162 (254)
T ss_dssp CTTTTTSCTHHHHHTTGGGCT-----TEEEEETTEEESSCCCCSC----CCSEEEEEC---EE--SSCSSCCEEE-EC-T
T ss_pred CCCccCCCcHHHHHHHHHHCC-----CEEEEeCCcccCHHHHHHH----HhCCceEEE---Ec--ccCCCCeEEE-EC-C
Confidence 233346799999998888773 58999999997544 3332 222222222 22 122 257654 66 5
Q ss_pred CCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
+++|..+.+++ ...++++|+|+|+++.++.|.+..+...+.+...+++ + .|+++.+.+
T Consensus 163 ~g~v~~~~e~~---~~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~~------------------~-~d~~~~l~~ 220 (254)
T 1jyk_A 163 DYKVQDIIVDS---KAGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLY------------------W-DNMVKDNIK 220 (254)
T ss_dssp TCBEEEEECCC---SSEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCC------------------T-THHHHTTGG
T ss_pred CCeEEEEEECC---CCCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccccC------------------H-HHHHHHHHh
Confidence 78999999974 3568899999999976655544332211111111111 2 777777777
Q ss_pred CCceeEEecc-ceeeecCCccchhhhhHHHH
Q 015259 241 KKQLYTYETM-DFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 241 ~~~i~~~~~~-g~~~~i~t~~~~~~an~~~~ 270 (410)
+..+.++..+ ++|.+|+|++||.++++.+.
T Consensus 221 ~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~ 251 (254)
T 1jyk_A 221 ELDVYVEELEGNSIYEIDSVQDYRKLEEILK 251 (254)
T ss_dssp GCCEEEEECCTTSEEECCSHHHHHHHHHHHC
T ss_pred hCCeEEEEecCCeEEEcCCHHHHHHHHHHhh
Confidence 7789999877 79999999999999987654
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-25 Score=199.15 Aligned_cols=223 Identities=13% Similarity=0.152 Sum_probs=165.4
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
++.||||||| .|+|| | ||+|+|++|+|||+|+++.+.+ |+|++. .+.+.+++++ ++.++.+
T Consensus 2 ~~~aiIlA~G--~stRl-p-----~K~L~~i~GkPli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~----~g~~v~~ 67 (252)
T 3oam_A 2 SFTVVIPARY--QSTRL-P-----GKPLADIGGKPMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA----FGGVVCM 67 (252)
T ss_dssp CEEEEEECCC--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEE
T ss_pred ceEEEEecCc--CCCCC-C-----CcceeeECCEEHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH----cCCEEEE
Confidence 5899999999 99999 4 7999999999999999999986 666663 4567777653 5666766
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCccccccc-----ceE
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQF-----GEL 155 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-----~~v 155 (410)
..++...|+++ +..+.+.+.....+.|++++||.++ ..++.++++.|.+.++++++++.+. +++..| +.|
T Consensus 68 ~~~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v--~~~~~~~~p~~g~v 144 (252)
T 3oam_A 68 TSPNHQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEI--EDEAEVFNPNAVKV 144 (252)
T ss_dssp CCTTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEE--CCHHHHTCTTSCEE
T ss_pred cCCCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeec--CCHHHhhCCCceEE
Confidence 66777788887 5555566631124789999999864 5669999999988778888888887 555556 888
Q ss_pred EEcCCCCcEEEEecCCCC-------------ccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccC
Q 015259 156 VADPDTNELLHYTEKPET-------------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRN 222 (410)
Q Consensus 156 ~~d~~~~~v~~i~ekp~~-------------~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (410)
..| ++++++.|.++|-. +.+.+.++|+|+|++++|+.+........+
T Consensus 145 v~d-~~g~v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~~~~~e------------------- 204 (252)
T 3oam_A 145 ITD-KSGYALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLE------------------- 204 (252)
T ss_dssp EEC-TTSBEEEEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSCCCHHH-------------------
T ss_pred EEC-CCCeEEEEeCCCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCCCCccc-------------------
Confidence 888 68899999887531 236789999999999999887654321110
Q ss_pred CCCCeeeeccchhccccCCCceeEEec-cceeeecCCccchhhhhHHHHhh
Q 015259 223 LTTDFVRLDQDILSPLAGKKQLYTYET-MDFWEQIKTPGMSLKCSGLYLAQ 272 (410)
Q Consensus 223 ~~~~~~~l~~d~l~~l~~~~~i~~~~~-~g~~~~i~t~~~~~~an~~~~~~ 272 (410)
..+. .+.++.+-.+.+|.++.. ...|.+||||+||.+++..+.++
T Consensus 205 ----~~E~-le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 205 ----KIEC-LEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp ----HHHT-CTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ----ccch-hHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 0000 223333334568999865 45689999999999999877653
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-25 Score=206.81 Aligned_cols=230 Identities=17% Similarity=0.255 Sum_probs=159.6
Q ss_pred eEEEEEecCCCCCCccccCC-CCCCccccccCC-ccchhhhHhhccc------EEEecccc-hHHHHHHHHhhcccCCcc
Q 015259 9 VVAVIMVGGPTKGTRFRPLS-LNIPKPLFPLGG-QPMVHHPISACKR------IYLVGFYE-EREFALYVSSISNELRIP 79 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt-~~~pK~llpi~g-~pli~~~l~~l~~------i~vv~~~~-~~~i~~~~~~~~~~~~~~ 79 (410)
|++|||||| .|+||+|+| ...||+|+|++| +|||+|+++.+.. ++|++.+. ...+.+++.+. ..
T Consensus 2 m~~VILAgG--~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~-~~---- 74 (336)
T 2x65_A 2 MKALILAGG--SGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPEL-PD---- 74 (336)
T ss_dssp CEEEEECCC--BCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTS-CG----
T ss_pred eEEEEECCC--CCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhcc-cc----
Confidence 789999999 999999999 789999999999 9999999999764 67776654 44566665542 11
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCC--ChHHH----HHHHHhcCCceEEEEEecCcccccccc
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF--PLPEM----LDAHRNYGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~--~l~~~----l~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (410)
..++.++...|+++++..+...+. .++.+++++||+++.. ++..+ ++.|.+.++.+|+.+.+. ...+.||
T Consensus 75 ~~ii~e~~~~gta~ai~~a~~~~~--~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~--~~~~~yG 150 (336)
T 2x65_A 75 ENIIAEPMKKNTAPACFIGTKLAD--DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPT--RPETGYG 150 (336)
T ss_dssp GGEEEESSCCCHHHHHHHHHTTSC--TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCC--SCCSSSE
T ss_pred ceEEeCCCCCCcHHHHHHHHHhhC--CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecc--cCCCCce
Confidence 133445677899999998877553 1357999999999743 44444 444665466667766555 3346799
Q ss_pred eEEEcCCC-----CcEEEEecCCCCcc--------ccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhh
Q 015259 154 ELVADPDT-----NELLHYTEKPETFV--------SDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSA 219 (410)
Q Consensus 154 ~v~~d~~~-----~~v~~i~ekp~~~~--------~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (410)
++..+ ++ ++|..|.|||.... ..+.++|+|+|+++.+ +.+++......+. .
T Consensus 151 ~I~~~-~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~--------------~ 215 (336)
T 2x65_A 151 YIEIG-EELEEGVHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYEN--------------L 215 (336)
T ss_dssp EEEEE-EEEETTEEEEEEEEESCCHHHHHHHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHH--------------H
T ss_pred EEEEC-CccCCCccEEEEEEECCChHHHHHHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHH--------------H
Confidence 99876 33 68999999986421 2478999999999876 6666533221100 0
Q ss_pred ccCCCCCeeeeccchhcc---------ccC-CCceeEEeccceeeecCCccchhhh
Q 015259 220 TRNLTTDFVRLDQDILSP---------LAG-KKQLYTYETMDFWEQIKTPGMSLKC 265 (410)
Q Consensus 220 ~~~~~~~~~~l~~d~l~~---------l~~-~~~i~~~~~~g~~~~i~t~~~~~~a 265 (410)
......+. +|..++++. +.+ ...+++++.+++|.|+||+++|.++
T Consensus 216 ~~~~~~~e-~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 216 KDVDPRNF-EELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp TTCCTTCH-HHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HHhhhhhh-hHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 00000011 222444443 344 3689999999999999999999887
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=191.19 Aligned_cols=224 Identities=12% Similarity=0.109 Sum_probs=152.6
Q ss_pred CCCCCCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhccc
Q 015259 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNE 75 (410)
Q Consensus 1 ~~~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~ 75 (410)
|+.+| ++.||||||| .|+||. ||+|+|++|+|||+|+++.+.+ |+|++. .+.+.++++.
T Consensus 4 M~~~M--~~~aIIlA~G--~stRl~------~K~L~~i~GkPli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~---- 67 (256)
T 3tqd_A 4 MRGKM--EFRVIIPARF--DSTRLP------GKALVDIAGKPMIQHVYESAIKSGAEEVVIATD--DKRIRQVAED---- 67 (256)
T ss_dssp -------CCEEEEECCC--C---CT------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----
T ss_pred cccCC--CceEEEEcCC--CCCCCC------CCCeeeECCchHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH----
Confidence 55555 7899999999 999994 7999999999999999999986 666654 3566666653
Q ss_pred CCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhc-CCceEEEEEecCc-c---c
Q 015259 76 LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY-GGMGTILVIKVSA-E---S 148 (410)
Q Consensus 76 ~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~-~~~~~l~~~~~~~-~---~ 148 (410)
++.++.+..++...|++. +..+.+.+.....+.++++.||.++ ...+.++++.+.+. +++++++..+... + +
T Consensus 68 ~g~~v~~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~ 146 (256)
T 3tqd_A 68 FGAVVCMTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFN 146 (256)
T ss_dssp TTCEEEECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTC
T ss_pred cCCeEEEeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhC
Confidence 566666666666777765 7777777731124789999999975 45699999998764 4466666666521 1 2
Q ss_pred ccccceEEEcCCCCcEEEEecCCCC-c-------------cccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhH
Q 015259 149 ASQFGELVADPDTNELLHYTEKPET-F-------------VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFE 214 (410)
Q Consensus 149 ~~~~~~v~~d~~~~~v~~i~ekp~~-~-------------~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 214 (410)
+..+. |..| ++++++.|.++|.. + .+.+...|+|.|++++++.+........+
T Consensus 147 p~~vk-vv~d-~~g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l~~s~lE----------- 213 (256)
T 3tqd_A 147 PHSTK-VVLN-RRNYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAE----------- 213 (256)
T ss_dssp TTSCE-EEEC-TTSBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHH-----------
T ss_pred CCccE-EEEC-CCCEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhCCCCccc-----------
Confidence 22223 5677 68899999998642 1 25688999999999999888764321110
Q ss_pred hhhhhccCCCCCeeeeccchhccccCCCceeEEeccce-eeecCCccchhhhhH
Q 015259 215 ALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDF-WEQIKTPGMSLKCSG 267 (410)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~-~~~i~t~~~~~~an~ 267 (410)
..+- .+.++.|-.+.+|+++..+++ |.+||||+||.+++.
T Consensus 214 ------------~~e~-leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~ 254 (256)
T 3tqd_A 214 ------------KMEA-LEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRA 254 (256)
T ss_dssp ------------HHHT-CTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHT
T ss_pred ------------chhh-hHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHH
Confidence 0000 123333445669999998875 899999999998864
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-24 Score=200.27 Aligned_cols=227 Identities=18% Similarity=0.231 Sum_probs=154.3
Q ss_pred ceEEEEEecCCCCCCccccCC-CCCCccccccCC-ccchhhhHhhccc------EEEecccc-hHHHHHHHHhhcccCCc
Q 015259 8 KVVAVIMVGGPTKGTRFRPLS-LNIPKPLFPLGG-QPMVHHPISACKR------IYLVGFYE-EREFALYVSSISNELRI 78 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt-~~~pK~llpi~g-~pli~~~l~~l~~------i~vv~~~~-~~~i~~~~~~~~~~~~~ 78 (410)
+|.+|||||| .|+||+|+| ...||+|+|++| +|||+|+++.+.. ++|++.+. ...+.+++.. .
T Consensus 2 ~m~~VILAgG--~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~------~ 73 (337)
T 2cu2_A 2 KTYALVMAGG--RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG------I 73 (337)
T ss_dssp CEEEEEECCC--CCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS------S
T ss_pred CeEEEEEcCC--CcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc------C
Confidence 4899999999 999999999 689999999999 9999999999865 67776654 3334333321 1
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhccc-CCCcEEEEcCCcccCC--ChHHHHHH----HHhcCCceEEEEEecCcccccc
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMED-NPSHIFLLNCDVCCSF--PLPEMLDA----HRNYGGMGTILVIKVSAESASQ 151 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~-~~~~~lvl~~D~i~~~--~l~~~l~~----~~~~~~~~~l~~~~~~~~~~~~ 151 (410)
.+ +.++...|++.++..+.. +... .++.+++++||+++.. .+..+++. |.+ ++.+|+...+. ...+.
T Consensus 74 ~~--i~e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~i~p~--~~~t~ 147 (337)
T 2cu2_A 74 RL--LLEPLGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALGLRPT--RPETE 147 (337)
T ss_dssp EE--EEESSCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEEECCS--SCCSS
T ss_pred ce--EecCCCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEeeccC--CCCCC
Confidence 22 344667899999988877 5321 2467999999999743 35554443 433 55666666555 34567
Q ss_pred cceEEEcCCC----CcEEEEecCCCCcc------c-cceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhh
Q 015259 152 FGELVADPDT----NELLHYTEKPETFV------S-DLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSA 219 (410)
Q Consensus 152 ~~~v~~d~~~----~~v~~i~ekp~~~~------~-~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (410)
||++..+ ++ ++|..|.|||.... + .+.++|+|+|+++.| +.+++......+.. +.-
T Consensus 148 yG~I~~~-~~~~~~~~V~~f~EKp~~~~a~~~~~~g~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~-----------~~~ 215 (337)
T 2cu2_A 148 YGYIRLG-PREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEAL-----------ERL 215 (337)
T ss_dssp SCEEEEE-EEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHH-----------HHH
T ss_pred ceEEEEC-CcccccCeEEEEEeCCChHHHHHHhhcCCEEEEEEEEEeHHHHHHHHHHHCHHHHHHH-----------HHH
Confidence 9999876 44 68999999986321 2 588999999999886 77765432211000 000
Q ss_pred ccCCCCCeeeeccchhcc---------ccC-CCceeEEeccceeeecCCccchhhhh
Q 015259 220 TRNLTTDFVRLDQDILSP---------LAG-KKQLYTYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 220 ~~~~~~~~~~l~~d~l~~---------l~~-~~~i~~~~~~g~~~~i~t~~~~~~an 266 (410)
.. .. .+ .+.++. +++ ...+++++.+++|.|+||+++|+++.
T Consensus 216 ~~---~~--~~-~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~ 266 (337)
T 2cu2_A 216 LA---GA--SL-EEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (337)
T ss_dssp HT---TC--CH-HHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred hc---CC--cH-HHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence 00 00 01 122221 333 35899999999999999999998865
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=182.57 Aligned_cols=219 Identities=16% Similarity=0.141 Sum_probs=156.6
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
++.||||||| .|+|| | +|+|+|++|+|||+|+++.+.+ |+|++. .+.+.++++. ++.++.+
T Consensus 18 ~~~aIIlA~G--~stRl-p-----~K~L~~i~GkPmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~----~g~~v~~ 83 (264)
T 3k8d_A 18 SFVVIIPARY--ASTRL-P-----GKPLVDINGKPMIVHVLERARESGAERIIVATD--HEDVARAVEA----AGGEVCM 83 (264)
T ss_dssp CCEEEEECCS--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEE
T ss_pred ceEEEEEcCC--CCCCC-C-----CcceeeECCeEHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH----cCCEEEE
Confidence 5899999999 99999 3 5999999999999999999986 666663 4566666653 4556655
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccc-----eE
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG-----EL 155 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-----~v 155 (410)
..++...|++. +..+.+.+.....+.++++.||.++ ...+.++++.+.+.+++++++..+. +++..|+ .|
T Consensus 84 ~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v--~d~~~~~~p~~vkV 160 (264)
T 3k8d_A 84 TRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI--HNAEEAFNPNAVKV 160 (264)
T ss_dssp CCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEEC--CSHHHHTCTTSCEE
T ss_pred ecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEc--CCHHHccCCCceEE
Confidence 55666777765 7777776632124789999999975 4569999999987778888888877 3322222 25
Q ss_pred EEcCCCCcEEEEecCCCC-c------------cccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccC
Q 015259 156 VADPDTNELLHYTEKPET-F------------VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRN 222 (410)
Q Consensus 156 ~~d~~~~~v~~i~ekp~~-~------------~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (410)
..| ++++++.|.++|.. . .+.+.++|+|+|++++++.+........+
T Consensus 161 v~d-~~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~~~lE------------------- 220 (264)
T 3k8d_A 161 VLD-AEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLE------------------- 220 (264)
T ss_dssp EEC-TTSBEEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCCCHHH-------------------
T ss_pred EEC-CCCeEEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhCCCChhh-------------------
Confidence 567 68999999998641 1 25688999999999999877653211100
Q ss_pred CCCCeeeeccchhccccCCCceeEEec-cceeeecCCccchhhhhHH
Q 015259 223 LTTDFVRLDQDILSPLAGKKQLYTYET-MDFWEQIKTPGMSLKCSGL 268 (410)
Q Consensus 223 ~~~~~~~l~~d~l~~l~~~~~i~~~~~-~g~~~~i~t~~~~~~an~~ 268 (410)
..+- .+.++.|..+.+|+++.. ...|.+||||+||.++...
T Consensus 221 ----~~e~-leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~ 262 (264)
T 3k8d_A 221 ----HIEM-LEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAE 262 (264)
T ss_dssp ----HHHT-CTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHH
T ss_pred ----hHHH-HHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHH
Confidence 0000 123333445568999854 4568999999999998764
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-22 Score=177.56 Aligned_cols=211 Identities=15% Similarity=0.217 Sum_probs=131.2
Q ss_pred CCCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCcc
Q 015259 4 SEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 4 ~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~ 79 (410)
.||++|.||||||| .|+||+|+ ||+|+|++|+|||+|+++.+.+ |+|++ +..+.+.+++. +.|+.+
T Consensus 14 ~~m~~~~~iIlA~G--~g~R~~~~----~K~l~~i~g~pli~~~l~~l~~~~~~i~vv~-~~~~~~~~~~~---~~~~~~ 83 (232)
T 2xme_A 14 GRIKLMKAVILAAG--LGTRLGGV----PKPLVRVGGCEIILRTMKLLSPHVSEFIIVA-SRYADDIDAFL---KDKGFN 83 (232)
T ss_dssp --CCCEEEEEEECC--------CC----CGGGCEETTEEHHHHHHHHHGGGEEEEEEEE-STTHHHHHHHH---TTSCCC
T ss_pred cccccceEEEECCc--CcCcCCCC----CcEEeEECCEEHHHHHHHHHHHhCCEEEEEe-CChHHHHHHHH---HhcCCc
Confidence 45667999999999 99999986 9999999999999999999876 66666 44555555542 345556
Q ss_pred EEEeeCCC-CCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 80 VRYLREDK-PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 80 i~~i~~~~-~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
+.++.+.. ..|++++++.+++.+. +++++++||.+++.+ +++...+.. . +++...........++.+..+
T Consensus 84 ~~~v~~~~~~~g~~~~i~~a~~~~~----~~~lv~~~D~p~~~~---~~~~l~~~~-~-~~~~~~~~~~~~~~~~~v~~~ 154 (232)
T 2xme_A 84 YKIVRHDRPEKGNGYSLLVAKNHVE----DRFILTMGDHVYSQQ---FIEKAVRGE-G-VIADREPRFVDIGEATKIRVE 154 (232)
T ss_dssp EEEEECSCGGGCHHHHHHTTGGGCC----SSEEEEETTEEECHH---HHHHHTTCC-E-EEEESSCSSSCTTTSCEEEEE
T ss_pred EEEEECCCCCCCcHHHHHHHHHHCC----CCEEEEcCCcccCHH---HHHHHHhCC-C-cEEEccccccCCCcceEEEEc
Confidence 77776543 3799999999888875 579999999987333 233322221 2 222211111123345666665
Q ss_pred CCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
++++..+.+++. .++++++|+|++++++|+.+.+...+ +.+.+ .+++.
T Consensus 155 --~g~v~~~~~~~~--~~~~~~~g~~~~~~~~~~~l~~~~~~-------------------------g~~~l-~~ll~-- 202 (232)
T 2xme_A 155 --DGRVAKIGKDLR--EFDCVDTGFFVLDDSIFEHAEKLRDR-------------------------EEIPL-SEIVK-- 202 (232)
T ss_dssp --TTEEEEEETTCS--SCSEEEEEEEEECTTHHHHHGGGTTS-------------------------SCCCH-HHHHH--
T ss_pred --CCEEEEeecCCC--CcceEEEEEEEECHHHHHHHHHHHhc-------------------------ChhHH-HHHHH--
Confidence 578999988753 45678899999999999877653210 11112 34443
Q ss_pred cCCCceeEEecc-ceeeecCCccchhhhhH
Q 015259 239 AGKKQLYTYETM-DFWEQIKTPGMSLKCSG 267 (410)
Q Consensus 239 ~~~~~i~~~~~~-g~~~~i~t~~~~~~an~ 267 (410)
.+.+..+... ++|.+|+||+||.+++.
T Consensus 203 --~~~v~~~~~~~~~~~dI~tpeDl~~a~~ 230 (232)
T 2xme_A 203 --LARLPVTYVDGELWMDVDTKEDVRRANR 230 (232)
T ss_dssp --HHTCBEEECCSCCEEEEECC--------
T ss_pred --cCCEEEEEECCCCEEeCCCHHHHHHHHh
Confidence 2346666554 68999999999988765
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=170.11 Aligned_cols=217 Identities=17% Similarity=0.165 Sum_probs=145.2
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
++.||||||| .|+||+ ||+|+|++|+|||+|+++.+.+ |+|++.+ +.+.++++. + .++.+.
T Consensus 2 ~~~aiIlA~G--~g~R~~------~K~l~~i~g~pli~~~l~~~~~~~~~i~v~~~~--~~i~~~~~~----~-~~~~~~ 66 (234)
T 2y6p_A 2 RRAVIIPARL--GSTRLK------EKPLKNLLGKPLIRWVVEGLVKTGERVILATDS--ERVKEVVED----L-CEVFLT 66 (234)
T ss_dssp CEEEEEECCS--CCTTTT------TGGGCEETTEEHHHHHHHHHHTTTSCEEEEESC--HHHHHHHTT----T-SEEEEC
T ss_pred ceEEEEEcCC--CCCCCC------CCcceeECCEEHHHHHHHHHHHhCCEEEEECCh--HHHHHHHHh----c-eEEEEC
Confidence 5889999999 999997 7999999999999999999876 6666654 456666543 3 344443
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc-cC-CChHHHHHHHHhcCCceEEEEEecCc-ccccccceEEEcCC
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC-CS-FPLPEMLDAHRNYGGMGTILVIKVSA-ESASQFGELVADPD 160 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i-~~-~~l~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~v~~d~~ 160 (410)
.+....|+++++ .+.+.+. .+.+++++||.+ ++ .++.++++.|.+.++.++++...... .++..++ +..+ +
T Consensus 67 ~~~~~~g~~~~~-~~~~~~~---~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 140 (234)
T 2y6p_A 67 PSDLPSGSDRVL-YVVRDLD---VDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVK-VVLD-R 140 (234)
T ss_dssp CTTCCSHHHHHH-HHHTTCC---CSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCE-EEEC-T
T ss_pred CcccccchHHHH-HHHHhCC---CCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceE-EEEc-C
Confidence 344456777655 4444443 468999999995 44 66999999987766444444432100 1222233 3345 5
Q ss_pred CCcEEEEecCCCC-cc-----ccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccch
Q 015259 161 TNELLHYTEKPET-FV-----SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (410)
Q Consensus 161 ~~~v~~i~ekp~~-~~-----~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (410)
++++..+.++|.. .+ ..+.++|+|+|+++.+..+........ .. .+. + . .
T Consensus 141 ~g~v~~~~e~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~~~~---~~-----------------~d~--~-~-~ 196 (234)
T 2y6p_A 141 EGYALYFSRSPIPYFRKNDTFYPLKHVGIYGFRKETLMEFGAMPPSKL---EQ-----------------IEG--L-E-Q 196 (234)
T ss_dssp TSBEEEEESSCCSCCSSCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHH---HH-----------------HHT--C-T-H
T ss_pred CCCEeeeecCCCCcccccccceeeEEEEEEEcCHHHHHHHHhCCCCcc---ch-----------------hhH--H-H-H
Confidence 7899999988642 11 356799999999998766543211000 00 000 1 1 1
Q ss_pred hccccCCCceeEEeccceeeecCCccchhhhhHHH
Q 015259 235 LSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 235 l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~ 269 (410)
++.+.++..+.+++.+++|.+|+||+||..++..+
T Consensus 197 ~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 197 LRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp HHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred HHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 23233466899999999999999999999987643
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=168.87 Aligned_cols=220 Identities=14% Similarity=0.104 Sum_probs=154.0
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhH-hhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPI-SACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l-~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
..||||||| .|+||.+ |+|++++|+|||+|++ +.+.+ |+|++. .+.+.++++ .++.++.+
T Consensus 2 ~~aiIlA~G--~stR~~~------K~L~~i~GkPli~~~i~~~~~~~~~~~vvVvt~--~~~i~~~~~----~~g~~v~~ 67 (253)
T 4fcu_A 2 KHIVIPARF--SSSRLPG------KPLLLIHDRPMILRVVDQAKKVEGFDDLCVATD--DERIAEICR----AEGVDVVL 67 (253)
T ss_dssp EEEEEECCS--CCTTSTT------GGGSEETTEEHHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHH----TTTCCEEE
T ss_pred eEEEEEeCC--CCCCCCC------CceeeECCeEhHHHHHHHHHHhcCCCEEEEECC--HHHHHHHHH----HcCCeEEE
Confidence 579999999 9999964 9999999999999999 88875 666664 355666654 35666665
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcC-Cc-eEEEEEecCc---ccccccceE
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYG-GM-GTILVIKVSA---ESASQFGEL 155 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~-~~-~~l~~~~~~~---~~~~~~~~v 155 (410)
..+....|+ +++..+.+.+.....+.++++.||.++ ...+..+++.+.+.+ .. +|++..-.+. .++..+ .|
T Consensus 68 ~~~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~-kv 145 (253)
T 4fcu_A 68 TSADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIV-KV 145 (253)
T ss_dssp CCTTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSC-EE
T ss_pred eCCCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCcc-EE
Confidence 555556666 477777777742224689999999975 356999999987753 33 4444432111 234443 35
Q ss_pred EEcCCCCcEEEEecCCC----C---------ccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccC
Q 015259 156 VADPDTNELLHYTEKPE----T---------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRN 222 (410)
Q Consensus 156 ~~d~~~~~v~~i~ekp~----~---------~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (410)
..| ++++++.|.++|- . +...+.++|+|+|+++++..+....+
T Consensus 146 v~d-~~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~~~~----------------------- 201 (253)
T 4fcu_A 146 VMS-KQNEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEM----------------------- 201 (253)
T ss_dssp EEC-TTSBEEEEESSCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTSCC-----------------------
T ss_pred EEC-CCCeEEEecCCCCCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHhCCC-----------------------
Confidence 666 6889999998753 1 23457899999999999987764321
Q ss_pred CCCCeeeeccchhcc---ccCCCceeEEeccce-eeecCCccchhhhhHHHHhh
Q 015259 223 LTTDFVRLDQDILSP---LAGKKQLYTYETMDF-WEQIKTPGMSLKCSGLYLAQ 272 (410)
Q Consensus 223 ~~~~~~~l~~d~l~~---l~~~~~i~~~~~~g~-~~~i~t~~~~~~an~~~~~~ 272 (410)
..+++ .+.+.. +-.+.+|+++..+++ |.+||||+||.+++..+.++
T Consensus 202 ---~~le~-~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 202 ---GKLEK-LESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp ---CHHHH-HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred ---Ccccc-hhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 11111 333333 334568999999999 99999999999998766544
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-20 Score=168.69 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=149.4
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
++.||||||| .|+||. +|+|+|++|+|||+|+++.+.+ |+|++.+ +.+.++++. ++..+..
T Consensus 2 ~~~aiIlA~G--~g~R~~------~K~l~~~~gkpli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~~~ 67 (262)
T 1vic_A 2 SFTVIIPARF--ASSRLP------GKPLADIKGKPMIQHVFEKALQSGASRVIIATDN--ENVADVAKS----FGAEVCM 67 (262)
T ss_dssp CCEEEEECCC--CCSSST------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH----TTCEEEE
T ss_pred CcEEEEEcCC--CCCCCC------CCccccCCCeEHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh----cCCEEEE
Confidence 5789999999 999994 4999999999999999999876 6666654 345666543 3444422
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcc-c--ccccceEEE
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAE-S--ASQFGELVA 157 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~-~--~~~~~~v~~ 157 (410)
..+....|++ ++..+.+.+.....+.+++++||.++ ..++..+++.+.+.++++++++.+.... + ...|..+..
T Consensus 68 ~~~~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (262)
T 1vic_A 68 TSVNHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLT 146 (262)
T ss_dssp CCCSSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEE
T ss_pred CCccccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEE
Confidence 2223445554 45556666642224679999999864 4569999999887777777777766221 0 123444554
Q ss_pred cCCCCcEEEEecCC-----------------CCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhc
Q 015259 158 DPDTNELLHYTEKP-----------------ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSAT 220 (410)
Q Consensus 158 d~~~~~v~~i~ekp-----------------~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (410)
+ +++++..|.+++ +.+...+.++|+|+|+++.+..+........
T Consensus 147 ~-~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~------------------ 207 (262)
T 1vic_A 147 D-KDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQL------------------ 207 (262)
T ss_dssp C-TTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHH------------------
T ss_pred C-CCCCEeeeecCCCCcCCccccccccccccccccceEEEEEEEEeeHHHHHHHHhCCCCch------------------
Confidence 6 577898887764 1223357899999999998776543211100
Q ss_pred cCCCCCeeeeccchhccccCCCceeEEecc-ceeeecCCccchhhhhHHHHh
Q 015259 221 RNLTTDFVRLDQDILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 221 ~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~-g~~~~i~t~~~~~~an~~~~~ 271 (410)
+..++.+. +..+..+.++.+++.+ ++|.+|+||+||..++..+..
T Consensus 208 -----~~~e~~~~-~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~ 253 (262)
T 1vic_A 208 -----ENLEKLEQ-LRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAA 253 (262)
T ss_dssp -----HHHHTCTT-HHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred -----hhhhhHHH-HHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHh
Confidence 00011022 2222245689999988 799999999999999877654
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=167.98 Aligned_cols=219 Identities=18% Similarity=0.240 Sum_probs=148.0
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
++.||||||| .|+|| | ||+|+|++|+|||+|+++.+.+ |+|++.+ +.+.++++. ++.++.
T Consensus 2 ~~~aiIlA~G--~~~R~-~-----~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~~ 67 (245)
T 1h7e_A 2 KAVIVIPARY--GSSRL-P-----GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA----FGGKAI 67 (245)
T ss_dssp CEEEEEECCS--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH----TTCEEE
T ss_pred CeEEEEEcCC--cCCCC-C-----CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHH----cCCeEE
Confidence 5899999999 99999 5 8999999999999999999865 6666654 456666553 344443
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhc-CCceEEEEEecCcccccccce--EE
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY-GGMGTILVIKVSAESASQFGE--LV 156 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~--v~ 156 (410)
...+....|+++.+ .+.+.+. .+.+++++||.++ ..++..+++.|.+. ++++++++.+.+......++. +.
T Consensus 68 ~~~~~~~~g~~~~~-~~~~~~~---~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (245)
T 1h7e_A 68 MTRNDHESGTDRLV-EVMHKVE---ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVV 143 (245)
T ss_dssp ECCSCCSSHHHHHH-HHHHHSC---CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEE
T ss_pred eCCCccCCcHHHHH-HHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcEEE
Confidence 32234456665544 4445453 4689999999975 45689999998877 667766665542111112222 22
Q ss_pred EcCCCCcEEEEecCCCC-c-----cccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeee
Q 015259 157 ADPDTNELLHYTEKPET-F-----VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRL 230 (410)
Q Consensus 157 ~d~~~~~v~~i~ekp~~-~-----~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (410)
.+ +++++..|.+++.. . .+.+.++|+|+|+++.+..+.... .+.+++
T Consensus 144 ~~-~~g~~~~~~~~~~~~~r~~~~~~~~~~~g~y~~~~~~l~~~~~~~--------------------------~~~~~~ 196 (245)
T 1h7e_A 144 VN-TRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLP--------------------------ESMPEQ 196 (245)
T ss_dssp EC-TTCBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSC--------------------------CCHHHH
T ss_pred EC-CCCcEEEeecCCCCCCcccccCceeEEEEEEEcCHHHHHHHHhCC--------------------------CCcccc
Confidence 34 56789888876422 1 235679999999998765433211 011122
Q ss_pred ccchhcccc---CCCceeEEeccceeeecCCccchhhhhHHHHhh
Q 015259 231 DQDILSPLA---GKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQ 272 (410)
Q Consensus 231 ~~d~l~~l~---~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~ 272 (410)
.|.++.+. .+.++.++..++.|.+|+||+||..+...+..+
T Consensus 197 -td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~~ 240 (245)
T 1h7e_A 197 -AESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQE 240 (245)
T ss_dssp -HHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHH
T ss_pred -chhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Confidence 45555432 356899999889999999999999998776544
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=174.11 Aligned_cols=244 Identities=12% Similarity=0.086 Sum_probs=127.0
Q ss_pred cEEEEcCCcccCC--ChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC-CCcEEEEecCCCCcc-ccceeeeEE
Q 015259 109 HIFLLNCDVCCSF--PLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD-TNELLHYTEKPETFV-SDLINCGVY 184 (410)
Q Consensus 109 ~~lvl~~D~i~~~--~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~-~~~v~~i~ekp~~~~-~~l~~~Giy 184 (410)
.=|+--+|+++.. +|.+++++|. +++.. . ++...+++..++.. .++| .|.|||+... ..+.++|+|
T Consensus 12 ~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g--~--~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~~~~~~aGiy 81 (374)
T 2iu8_A 12 SGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG--N--GATLLSGVEEIEEAKTAHI-TFLDNEKYAKHLKSSEAGAI 81 (374)
T ss_dssp ---------CCSCCEEHHHHHHHTT-----CEEES--C--TTCEECEECCTTTCCTTEE-EECCSSSTHHHHHTCCCSEE
T ss_pred cCcccCccccccCcCcHHHHHHhhC-----CEEEC--C--CcceEEEEeccccCCCCeE-EEEeCchhhhhhhcCCcEEE
Confidence 3467789999986 8999999885 24442 2 55667887777632 3456 8999987533 256789999
Q ss_pred EEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeec--CCccch
Q 015259 185 VFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQI--KTPGMS 262 (410)
Q Consensus 185 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i--~t~~~~ 262 (410)
+|++++++.+.. + .++++ ++..++.++|....+|++. .++...
T Consensus 82 I~~~~~l~~~~~---------------------------------~-~~~~p-l~~~~~~~a~~~~~~~~~~~i~~~~~~ 126 (374)
T 2iu8_A 82 IISRTQFQKYRD---------------------------------L-NKNFL-ITSESPSLVFQKCLELFITPVDSGFPG 126 (374)
T ss_dssp EEEHHHHHTSTT---------------------------------S-CSCEE-EESSCHHHHHHHHHTTTSCCCCCSCCS
T ss_pred EeChhHhhhccc---------------------------------c-ccceE-EEeCCHHHHHHHHHHHhccccccccCc
Confidence 999988642221 1 33444 4444444444444455543 121111
Q ss_pred hhhhHHHHhhhhhcCCCcccCCC-CCCCcEEccCeEE------CCCCEECCCcEECCCcEECCCcEECCCCEE-eeeEEC
Q 015259 263 LKCSGLYLAQFRLTSPNLLASGD-GTKNATIIGDVYV------HPSAKIHPTAKIGPNVSISANARIGAGVRL-ISCIIL 334 (410)
Q Consensus 263 ~~an~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~i------~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-~~~~i~ 334 (410)
... ...+.+.. --.++.+.++++| |+++.|++++.|++++.||++|.|++++.| .++.||
T Consensus 127 i~~------------~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG 194 (374)
T 2iu8_A 127 IHP------------TAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIG 194 (374)
T ss_dssp BCT------------TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEEC
T ss_pred cCC------------CCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceEC
Confidence 000 00000000 0012333333333 333333334444444445555555555555 256666
Q ss_pred CCCEECCCCEEE---------------------eeEECCCCEECCCcEEccCCC------------------CCcc----
Q 015259 335 DGVEIMENAVVT---------------------NAIVGWKSSIGRWSRVQAEGD------------------FNAK---- 371 (410)
Q Consensus 335 ~~~~i~~~~~i~---------------------~~~i~~~~~i~~~~~i~~~~~------------------~~~~---- 371 (410)
++|.|+.+++|. .++|+++|+||+++.|..+.. +...
T Consensus 195 ~~~~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~ 274 (374)
T 2iu8_A 195 KRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQH 274 (374)
T ss_dssp TTCEECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEECTTCEECTT
T ss_pred CCCEECCCCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcEEccCcccceeECCCcEECCccccCCccEECCC
Confidence 666666666663 266777777777776643210 0000
Q ss_pred ---------eeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 372 ---------LGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 372 ---------~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
.+.+.||++|+|+.++.| .+++|++++.|+.++++..+
T Consensus 275 ~~i~~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~v~~~~~ 328 (374)
T 2iu8_A 275 SMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKSITSPGI 328 (374)
T ss_dssp CEECTTCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEECSCBCSCEE
T ss_pred CEEccCcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCceeecccCCCcE
Confidence 122556666666666655 57778888888888876543
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=152.72 Aligned_cols=200 Identities=15% Similarity=0.065 Sum_probs=133.8
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
++.||||||| .|+||+ ||+|+|++|+|||+|+++.+.+ |+|++.. +.+.++++. ++.++
T Consensus 4 ~~~aiIlA~G--~g~R~~------~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~- 68 (228)
T 1ezi_A 4 QNIAVILARQ--NSKGLP------LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKN----FGVEV- 68 (228)
T ss_dssp EEEEEEECCS--SCSSST------TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHH----TTCEE-
T ss_pred ceEEEEecCC--CCCCCC------CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHH----cCCEE-
Confidence 5789999999 999997 7999999999999999999864 6666643 345555543 44444
Q ss_pred EeeCC----CCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceE
Q 015259 82 YLRED----KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGEL 155 (410)
Q Consensus 82 ~i~~~----~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v 155 (410)
+..+. ...|++++++.+++.+. ...+.+++++||.++ ..++..+++.+.+.++++++...+. .+. .++..
T Consensus 69 ~~~~~~~~~~~~g~~~sv~~~l~~~~-~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~~-p~~~~ 144 (228)
T 1ezi_A 69 VLRPAELASDTASSISGVIHALETIG-SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPM--EHH-PLKTL 144 (228)
T ss_dssp EECCC------CHHHHHHHHHHHHHT-CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEEC--SSC-TTSCE
T ss_pred EeCchHHcCCCCChHHHHHHHHHHhC-CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEec--CCC-cceee
Confidence 22222 45677899999988883 123679999999875 3568889888776666777777665 331 13333
Q ss_pred EEcCCCCcEEEEec-C---CC--C-ccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCee
Q 015259 156 VADPDTNELLHYTE-K---PE--T-FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (410)
Q Consensus 156 ~~d~~~~~v~~i~e-k---p~--~-~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (410)
..+ +++.+..+.+ + +. . ......++|+|++++..+....+
T Consensus 145 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~-------------------------------- 191 (228)
T 1ezi_A 145 LQI-NNGEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANNC-------------------------------- 191 (228)
T ss_dssp EEC-C--CEEESSCHHHHTCCGGGSCCEEEEEEEEEEEEHHHHHHHTS--------------------------------
T ss_pred EEc-CCCcEeeccccccccCCcccCchhheeeeEEEEEeHHHHhhCCc--------------------------------
Confidence 335 5678888765 1 11 1 11234568999999876532110
Q ss_pred eeccchhccccCCCceeEEecc-ceeeecCCccchhhhhHHH
Q 015259 229 RLDQDILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 229 ~l~~d~l~~l~~~~~i~~~~~~-g~~~~i~t~~~~~~an~~~ 269 (410)
++ +..+..+... ..|.+|+||+||..+...+
T Consensus 192 -----~~-----g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l 223 (228)
T 1ezi_A 192 -----FF-----IAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (228)
T ss_dssp -----SC-----CSSCEEEECCTGGGCCCCSHHHHHHHHHHH
T ss_pred -----cc-----CCceEEEEeCcccccCCCCHHHHHHHHHHH
Confidence 00 3456666654 5899999999999887654
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-19 Score=161.76 Aligned_cols=216 Identities=13% Similarity=0.102 Sum_probs=138.3
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
+|.+|||||| . +||++.+...||+|+|++|+|||+|+++.+.. |+|+++. +.+.++ . .+.+
T Consensus 2 ~~~~vIlAaG--~-tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~~~~ivvv~~~--~~i~~~-------~--~~~~- 66 (232)
T 2dpw_A 2 RPSAIVLAGG--K-EAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGEN--PGLVPA-------P--ALTL- 66 (232)
T ss_dssp CCEEEEECCC--B-CSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTTCEEEEESCC--SSCSSC-------C--SEEE-
T ss_pred ceeEEEECCC--C-CccccccCCCCceeeEECCEEHHHHHHHHHHhcCCEEEEEeCh--HHHhhh-------c--CeEe-
Confidence 4899999999 9 88877776689999999999999999999886 6666653 222211 1 2344
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccc-cccceEEEcCC
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESA-SQFGELVADPD 160 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~d~~ 160 (410)
....|++++++.+++.+. +.+++++||.++ ...+..+++ | +.++++++...+. ++. ..|+.+.
T Consensus 67 --~~~~g~~~~i~~a~~~~~----~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~--~~~~~~~~~~~---- 132 (232)
T 2dpw_A 67 --PDRGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPK--EAVEARFPRTK---- 132 (232)
T ss_dssp --CCCSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEH--HHHHHHCTTCC----
T ss_pred --cCCCCHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeec--cchhhhCCCcc----
Confidence 457899999999988874 689999999964 456888888 6 5556667666553 211 3344321
Q ss_pred CCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhccccccc-c-hhhhccc-hhHhhhhhccCCCCCeeeeccchhcc
Q 015259 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKD-R-ENLRRVS-SFEALQSATRNLTTDFVRLDQDILSP 237 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (410)
.++..+.|+| ..++|+|+|+++.+..+.+..+...+ . +.-...+ ....+.. +.. .+.+.+ +++++.
T Consensus 133 -~~v~~~~ek~------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~--~~~-~ge~~l-~~~~~~ 201 (232)
T 2dpw_A 133 -RTYARLREGT------FTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLL--KLL-LGRLSL-AEVEAR 201 (232)
T ss_dssp -CCCEEETTEE------EEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHHHH--HHH-HTCCCH-HHHHHH
T ss_pred -eeEEEEecCc------eeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHHHH--HHH-hccCCH-HHHHHH
Confidence 3467776664 37899999999987655442211100 0 0000000 0000000 000 022334 677766
Q ss_pred ccC--CCceeEEec--cceeeecCCccchh
Q 015259 238 LAG--KKQLYTYET--MDFWEQIKTPGMSL 263 (410)
Q Consensus 238 l~~--~~~i~~~~~--~g~~~~i~t~~~~~ 263 (410)
+.. +..+..+.. .+.|.+||||+||.
T Consensus 202 ~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 202 AQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp HHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred HHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 553 356777776 46799999999984
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-18 Score=152.05 Aligned_cols=210 Identities=15% Similarity=0.089 Sum_probs=127.9
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCC--c-
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELR--I- 78 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~--~- 78 (410)
|.+|||||| .|+||++ ...||+|+|++|+|||+|+++.+.+ |+|++.+.. +.+.++++. ++ .
T Consensus 3 ~~~iIlA~G--~g~R~~~--~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~----~~~~~~ 74 (236)
T 2vsh_A 3 IYAGILAGG--TGTRMGI--SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDK----YLPLYK 74 (236)
T ss_dssp EEEEEEEC---------------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHH----HCGGGG
T ss_pred eEEEEeCCc--cccccCC--CCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHh----cccccc
Confidence 789999999 9999998 6789999999999999999999863 777766655 556666654 23 1
Q ss_pred -cEEEeeCCCCCCcHHHHHHhHHHhcc--c--CCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccc
Q 015259 79 -PVRYLREDKPHGSAGALYNFRDLIME--D--NPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQ 151 (410)
Q Consensus 79 -~i~~i~~~~~~g~~~~l~~~~~~l~~--~--~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 151 (410)
...+. ....|.+++++.+++.+.. . ..+.+++++||.++ ..++..+++.|.+.++ .+++.+. .++
T Consensus 75 ~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~~~~--~~~-- 146 (236)
T 2vsh_A 75 ERIIIT--KGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTVVEA--VDT-- 146 (236)
T ss_dssp GGEEEE--ECCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEEEEC--CSC--
T ss_pred CceEEE--CCCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEEEec--ccc--
Confidence 22222 2335788999998887742 1 13578899999953 4569999998876544 2333444 222
Q ss_pred cceEEEcCCCC-cEEEEecCCCCcccccee-eeEEEEcHHHHH-HhhhcccccccchhhhccchhHhhhhhccCCCCCee
Q 015259 152 FGELVADPDTN-ELLHYTEKPETFVSDLIN-CGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (410)
Q Consensus 152 ~~~v~~d~~~~-~v~~i~ekp~~~~~~l~~-~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (410)
+..+ +++ ++..+.+++. +.. ...|+|+++.+. .+...... +.+
T Consensus 147 ---~~~~-~~g~~~~~~~~~~~-----~~~~~~p~~f~~~~l~~~~~~~~~~-------------------------g~~ 192 (236)
T 2vsh_A 147 ---IVES-TNGQFITDIPNRAH-----LYQGQTPQTFRCKDFMDLYGSLSDE-------------------------EKE 192 (236)
T ss_dssp ---EEEC-SSSSBCCBCCCGGG-----EEEEEEEEEEEHHHHHHHHHTCCHH-------------------------HHH
T ss_pred ---EEEe-CCCCeeeeecChHH-----heeecCCcEecHHHHHHHHHHHHhc-------------------------CCC
Confidence 2223 356 7776666532 222 247889988764 44322110 111
Q ss_pred eeccchhccccC-CCceeEEeccceeeecCCccchhhhhHHH
Q 015259 229 RLDQDILSPLAG-KKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 229 ~l~~d~l~~l~~-~~~i~~~~~~g~~~~i~t~~~~~~an~~~ 269 (410)
++ .+.+..+.. +..+..++..++|.+|+||+||..++..+
T Consensus 193 ~~-~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~ 233 (236)
T 2vsh_A 193 IL-TDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMI 233 (236)
T ss_dssp HC-CSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHT
T ss_pred cC-CCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHh
Confidence 12 333333332 34788888778999999999999887643
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=149.51 Aligned_cols=219 Identities=16% Similarity=0.150 Sum_probs=138.4
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchH-HHHHHHHhhcccCCccE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEER-EFALYVSSISNELRIPV 80 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~-~i~~~~~~~~~~~~~~i 80 (410)
++.||||||| .|+||++ ..+||+|+|++|+|||+|+|+.+.+ |+|++..... .+.+.++.. .+...+
T Consensus 3 ~~~aIIlAaG--~g~Rm~~--~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~--~~~~~~ 76 (246)
T 3f1c_A 3 LIYAQILAGG--KGTRMGN--VSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKY--ISDDRI 76 (246)
T ss_dssp CEEEEEECC-------C-C--SSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHH--CCCTTE
T ss_pred ccEEEEECCc--cccccCC--CCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHh--CCCCCE
Confidence 5899999999 9999987 5789999999999999999999864 6666654432 344555432 122345
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhccc----CCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccce
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMED----NPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGE 154 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~----~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 154 (410)
.++. ...+..++++.+++.+... ..+.+++++||.++ ...+.++++.+.+.++. +...+. .+ .+
T Consensus 77 ~~~~--~~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~--i~~~~~--~d----~i 146 (246)
T 3f1c_A 77 VVIE--GGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAV--DTVIEA--LD----TI 146 (246)
T ss_dssp EEEE--CCSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEE--EEEEEC--SS----CE
T ss_pred EEEC--CCCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCE--EEEEec--cc----eE
Confidence 5554 2346788999999888631 24689999999875 45599999999876543 333343 22 23
Q ss_pred EEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccc
Q 015259 155 LVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQD 233 (410)
Q Consensus 155 v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 233 (410)
+..+ +++.+..+.+++.. +..-.-++|+.+. ++.+...... .+ +.+ +|
T Consensus 147 ~~~~-~~~~v~~~~~r~~l----~~~qtpq~f~~~~L~~a~~~~~~~-------~~------------------~~~-TD 195 (246)
T 3f1c_A 147 VESS-NHEVITDIPVRDHM----YQGQTPQSFNMKKVFNHYQNLTPE-------KK------------------QIL-TD 195 (246)
T ss_dssp EECS-SSSBCCBCCCGGGE----EEEEEEEEEEHHHHHHHHHTSCHH-------HH------------------HHC-CC
T ss_pred EEec-CCCeEEEecChHHh----hhhcCCceeEHHHHHHHHHHHHHc-------CC------------------Ccc-Cc
Confidence 3333 34556555554221 1112346788765 4555432100 01 123 56
Q ss_pred hhccccC-CCceeEEeccceeeecCCccchhhhhHHHHhhh
Q 015259 234 ILSPLAG-KKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQF 273 (410)
Q Consensus 234 ~l~~l~~-~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~ 273 (410)
....+.. +.++..++.+..|.+|+||+||..++..+.++.
T Consensus 196 ~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 196 ACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp HHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence 6555543 458999998889999999999999998776543
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=148.53 Aligned_cols=150 Identities=21% Similarity=0.195 Sum_probs=103.6
Q ss_pred CCCceeEEeccce----eeecCCccchhhhhHHHHhhhhhcCCCcccCC-------CC---CCCcEEccCeEECCCCEEC
Q 015259 240 GKKQLYTYETMDF----WEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG-------DG---TKNATIIGDVYVHPSAKIH 305 (410)
Q Consensus 240 ~~~~i~~~~~~g~----~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~-------~~---~~~~~i~~~~~i~~~~~i~ 305 (410)
+..+++++...++ |.++++ |+.++..++..+.......+... .. ..++.+.+++.||++|.|+
T Consensus 37 ~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I~ 113 (240)
T 3r8y_A 37 ETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIM 113 (240)
T ss_dssp TTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBSSCEECTTCEEC
T ss_pred CcceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECCCcEECCCCEEC
Confidence 4456777766655 888877 77777777654443322111110 00 1456666777777777777
Q ss_pred CCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEe---------eEECCCCEECCCcEEccCCCCCcceeee
Q 015259 306 PTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTN---------AIVGWKSSIGRWSRVQAEGDFNAKLGIT 375 (410)
Q Consensus 306 ~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~~~~~~~~~~~~ 375 (410)
+++.|.+++.||++|.|+.++.|+ +++||++|+|++++.+.+ ++|+++|+||.++.|..+ +
T Consensus 114 ~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~---------~ 184 (240)
T 3r8y_A 114 MNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEG---------V 184 (240)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTT---------C
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCC---------c
Confidence 777777777777777777777775 788888888888888875 888888888888888666 8
Q ss_pred EECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 376 ILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 376 ~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
.||++|+|++++++.+. |.+++++..
T Consensus 185 ~Ig~~~~I~~gsvV~~~-vp~~~v~~G 210 (240)
T 3r8y_A 185 TVGKGAVVAAGAVVTED-VPPYTVVAG 210 (240)
T ss_dssp EECTTCEECTTCEECSC-BCTTEEEEE
T ss_pred EECCCCEECCCCEECCC-cCCCcEEEc
Confidence 88888888888888554 455555543
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=147.63 Aligned_cols=214 Identities=15% Similarity=0.208 Sum_probs=129.4
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCc
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRI 78 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~ 78 (410)
||.++.||||||| .|+||+. ..||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.+++. ..++.
T Consensus 1 m~~~~~aiIlAaG--~g~R~~~---~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~---~~~~~ 72 (228)
T 2yc3_A 1 MEKSVSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYE---ESIDV 72 (228)
T ss_dssp CTTCEEEEEECCC--CC----------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTT---TTSSS
T ss_pred CCcceEEEEECCc--cccccCC---CCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHH---HhCCC
Confidence 3457999999999 9999973 679999999999999999999863 77777665544443332 23444
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEE
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELV 156 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 156 (410)
++.++. ...|..++++.+++.+.. ..+.++++.||.++ ..++..+++.|.+.++ +++..+. .+. +..
T Consensus 73 ~v~~~~--~~~~~~~sv~~al~~~~~-~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~~~~--~~~----~~~ 141 (228)
T 2yc3_A 73 DLSFAI--PGKERQDSVYSGLQEIDV-NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLGVPA--KAT----IKE 141 (228)
T ss_dssp EEEEEC--CCSSHHHHHHHHHTTSCT-TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEEEEC--CSC----CCC
T ss_pred cEEEEC--CCCCHHHHHHHHHHhhcc-CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEEEec--cce----EEE
Confidence 566654 236888999999888752 23567889999864 3458999998876543 3434443 111 112
Q ss_pred EcCCCCcEEEEecCCCCccccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 157 ADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 157 ~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
.+ +++.+..+.+++ ...... ..|+|+++.+ +.+...... + +.+ .+.+
T Consensus 142 ~~-~~~~v~~~~~~~---~~~~~~-~~~~f~~~~l~~~~~~~~~~-------------------------~-~~~-~~~~ 189 (228)
T 2yc3_A 142 VN-SDSLVVKTLDRK---TLWEMQ-TPQVIKPELLKKGFELVKSE-------------------------G-LEV-TDDV 189 (228)
T ss_dssp BC-TTSCBCCCCSCC---CCEEEE-EEEEECHHHHHHHHHHHHHH-------------------------T-CCC-CSTT
T ss_pred Ec-CCCceEEecCcc---ceEEEe-CCcEEEHHHHHHHHHHHHhc-------------------------C-CCc-ccHH
Confidence 23 344454432221 111222 3889998643 444321100 1 112 4444
Q ss_pred ccccC-CCceeEEeccceeeecCCccchhhhhHHH
Q 015259 236 SPLAG-KKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 236 ~~l~~-~~~i~~~~~~g~~~~i~t~~~~~~an~~~ 269 (410)
..+.+ +..+..+.....|.+|+||+||..+...+
T Consensus 190 ~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l 224 (228)
T 2yc3_A 190 SIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (228)
T ss_dssp HHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred HHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHH
Confidence 44433 34666555556799999999999887654
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.8e-17 Score=143.77 Aligned_cols=214 Identities=16% Similarity=0.200 Sum_probs=123.1
Q ss_pred CCCCCCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcc
Q 015259 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISN 74 (410)
Q Consensus 1 ~~~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~ 74 (410)
|+..| +|.+|||||| .|+||++ ..||+|+|++|+|||+|+++.+.. |+|++.+..+.+.+ +... .
T Consensus 1 m~~~~--~~~aiIlA~G--~g~R~~~---~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~-~ 71 (231)
T 1vgw_A 1 MSLKR--KNIALIPAAG--IGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTA-F 71 (231)
T ss_dssp ---CC--CEEEEEECC---------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHH-C
T ss_pred CCCCC--ceEEEEEccc--ccccCCC---CCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhc-C
Confidence 55544 6899999999 9999997 689999999999999999999864 77777655445555 4331 1
Q ss_pred cCCccEEEeeCCCCCCcHHHHHHhHHHhccc----CCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCccc
Q 015259 75 ELRIPVRYLREDKPHGSAGALYNFRDLIMED----NPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAES 148 (410)
Q Consensus 75 ~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~----~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~ 148 (410)
. ..+.++ ....|++++++.+.+.+... ..+.+++++||.++ ...+..+++.+.+.+.. .+++.+. .+
T Consensus 72 -~-~~i~~~--~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~-~~~~~~~--~~ 144 (231)
T 1vgw_A 72 -P-QVRVWK--NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEG-GILAVPV--AD 144 (231)
T ss_dssp -T-TSEEEC--CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTC-EEEEEEC--CS
T ss_pred -C-CceEEE--cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCe-EEEEeec--cc
Confidence 1 235554 34578999999988877421 24679999999875 34588999888654422 3333333 12
Q ss_pred ccccceEEEcCCCCcEEEEecCCCCccccc-eeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCe
Q 015259 149 ASQFGELVADPDTNELLHYTEKPETFVSDL-INCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (410)
Q Consensus 149 ~~~~~~v~~d~~~~~v~~i~ekp~~~~~~l-~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (410)
. +... +++++....++ ..+ .....|+|+++.+..+.+.... .+.
T Consensus 145 ~-----~~~~-~~g~i~~~~~~-----~~~~~~~~p~~f~~~~l~~~~~~~~~------------------------~g~ 189 (231)
T 1vgw_A 145 T-----LKRA-ESGQISATVDR-----SGLWQAQTPQLFQAGLLHRALAAENL------------------------GGI 189 (231)
T ss_dssp C-----EEEE-SSSBEEEEECC-----TTEEEEEEEEEEEHHHHHHHHHC----------------------------CC
T ss_pred c-----eEEe-CCCceEecCCh-----HHheeeeCCcEecHHHHHHHHHHHhh------------------------cCC
Confidence 1 1112 23455543322 122 1224888998766443221100 010
Q ss_pred eeeccchhccccCCCceeEEeccceeeecCCccchhhhhHH
Q 015259 228 VRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGL 268 (410)
Q Consensus 228 ~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~ 268 (410)
.+. ..++..+ +..+..+...+.|.+|+||+||..+...
T Consensus 190 ~~~-~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~ 227 (231)
T 1vgw_A 190 TDE-ASAVEKL--GVRPLLIQGDARNLKLTQPQDAYIVRLL 227 (231)
T ss_dssp CSH-HHHHHTT--TCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred CcH-HHHHHHc--CCCEEEEECCccccCcCCHHHHHHHHHH
Confidence 000 2222221 3467777777789999999999888653
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-17 Score=144.15 Aligned_cols=207 Identities=15% Similarity=0.144 Sum_probs=135.3
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCCccE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPV 80 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~i 80 (410)
+|.+|||||| .|+||+ ...||+|+|++|+|||+|+++.+.+ ++|++.+.. +.+.+++. +..+
T Consensus 2 ~~~~vIlA~G--~g~R~~---~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~------~~~v 70 (223)
T 2xwl_A 2 ATVAVVPAAG--SGERLR---AGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG------GEDS 70 (223)
T ss_dssp CEEEEEECCC--CCGGGT---SSSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC------BTTE
T ss_pred ceEEEEECCc--cCcccC---CCCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc------cCCe
Confidence 5899999999 999998 3679999999999999999999874 666666544 33444331 2245
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
.++... .+.+++++.+++.+. ..+.++++.||.++ ..++..+++.+. .+.++++.+.+. .++..+ .+
T Consensus 71 ~~~~~~--~~~~~~i~~al~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~--~d~~~~----~~ 139 (223)
T 2xwl_A 71 VIVSGG--VDRTESVALALEAAG--DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAP--ADTIKA----VD 139 (223)
T ss_dssp EEEECC--SSHHHHHHHHHTTCT--TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECC--SSCEEE----EC
T ss_pred EEEcCC--CCHHHHHHHHHHhcC--CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEec--ccceEE----Ec
Confidence 555432 457888998888772 13678889999864 346899998883 234555555554 232222 25
Q ss_pred CCCCcEEEEecCCCCcccccee-eeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhcc
Q 015259 159 PDTNELLHYTEKPETFVSDLIN-CGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~~~~l~~-~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (410)
+++++..+.+++. +.. ...|+|++..+..+.+... ++ .+ .+....
T Consensus 140 -~~g~~~~~~e~~~-----l~~~~~p~~f~~~~l~~~~~~~~--------------------------~~-~~-~~~~~~ 185 (223)
T 2xwl_A 140 -ANGAVLGTPERAG-----LRAVQTPQGFHADVLRRAYARAT--------------------------AG-GV-TDDASL 185 (223)
T ss_dssp -TTSBEEECCCGGG-----EEEECSCEEEEHHHHHHHHTTCC--------------------------SC-CC-CCHHHH
T ss_pred -CCCcEEeecChHH-----heeeeCCcccCHHHHHHHHHHhh--------------------------CC-CC-ccHHHH
Confidence 5678888777632 221 2357788876644332110 00 01 233332
Q ss_pred ccC-CCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 238 LAG-KKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 238 l~~-~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
+.. +..+..++.++.|.+|+||+||..+...+.
T Consensus 186 ~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~ 219 (223)
T 2xwl_A 186 VEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLA 219 (223)
T ss_dssp HHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEECCcccccccCHHHHHHHHHHHh
Confidence 222 346888887889999999999999876554
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=139.31 Aligned_cols=200 Identities=13% Similarity=0.082 Sum_probs=127.0
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
++.||||||| .|+||. +|+|+|++|+|||+|+++.+.+ |+|++. .+.+.++++. ++.++.
T Consensus 3 ~~~aiIlA~G--~s~R~~------~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~~----~g~~~~ 68 (229)
T 1qwj_A 3 HLAALVLARG--GSKGIP------LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQ----FGAQVH 68 (229)
T ss_dssp CEEEEEECCS--CCSSSS------CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH----TTCEEE
T ss_pred cEEEEEEcCC--CCCCCC------CcccceECCEEHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHHH----cCCEEE
Confidence 5889999999 999994 4999999999999999999875 666553 3456666543 444442
Q ss_pred EeeC---CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEE
Q 015259 82 YLRE---DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELV 156 (410)
Q Consensus 82 ~i~~---~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 156 (410)
.... ....+..+++..+.+.+. ..+.+++++||.++ ..++..+++.|.+.+++.++.+... .++..+++
T Consensus 69 ~~~~~~~~~~~~~~~~v~~al~~~~--~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~--~~p~~~~v-- 142 (229)
T 1qwj_A 69 RRSSETSKDSSTSLDAIVEFLNYHN--EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRR--HQFRWSEI-- 142 (229)
T ss_dssp ECCGGGSSTTCCHHHHHHHHHTTCT--TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEE--CCCEECCC--
T ss_pred eChhhhcCCCCcHHHHHHHHHHhcC--CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeec--cChhHhhc--
Confidence 2211 123344578888877763 24679999999975 3569999999887766655544433 33333332
Q ss_pred EcCCCCcEEE--EecC------CCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCee
Q 015259 157 ADPDTNELLH--YTEK------PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (410)
Q Consensus 157 ~d~~~~~v~~--i~ek------p~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (410)
.+ ....+.. +.++ ...+.....++|+|+++++.| +..
T Consensus 143 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l--~~~-------------------------------- 187 (229)
T 1qwj_A 143 QK-GVREVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLI--EMG-------------------------------- 187 (229)
T ss_dssp CS-STTCCCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHH--HTT--------------------------------
T ss_pred cc-cccccccccccccccccCCCCCCceEEEeeEEEEEEHHHh--ccc--------------------------------
Confidence 12 0000111 1111 112234567899999999887 110
Q ss_pred eeccchhccccCCCceeEEecc-ceeeecCCccchhhhhHHHHh
Q 015259 229 RLDQDILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 229 ~l~~d~l~~l~~~~~i~~~~~~-g~~~~i~t~~~~~~an~~~~~ 271 (410)
+..+..+..+... ++|.+|||++||..++..+.+
T Consensus 188 ---------~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 188 ---------YLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp ---------CSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred ---------cccCCeEEEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 1112234331433 689999999999999877654
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-17 Score=161.75 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=98.6
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~ 368 (410)
.+.+.+++.||+++.|+++|.| ++++||++|.|+++|.|.+|+||++|.|++++.|.+++||++|+||++|.|.++..
T Consensus 285 ~a~i~g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~~~- 362 (496)
T 3c8v_A 285 YAVIKGDTVIGENVLVSQRAYL-DNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSES- 362 (496)
T ss_dssp TSEEESSCEECTTCEECTTCEE-EEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEETCEECTTCEEECCSS-
T ss_pred CcEEeCCeEECCCCEECCCcEE-eceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCCCC-
Confidence 4566678889999999999999 58999999999999999999999999999999999999999999999999988421
Q ss_pred CcceeeeEECCCCEECCCcEEc---ceEEcCCcEEcccCCC
Q 015259 369 NAKLGITILGEAVGVEDEVVVT---NSIVLPNKTLNVSVHQ 406 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v~---~~~v~~~~~v~~~~~~ 406 (410)
..++||++|.||++++|. +..|++++.+...+.+
T Consensus 363 ----~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~G~v~~ 399 (496)
T 3c8v_A 363 ----SPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVWGYIRN 399 (496)
T ss_dssp ----SCEEECTTCEECTTCEEECSSCEEECSSEEECSEESS
T ss_pred ----cceEECCCCEECCCCEEecCCCcEeCCCCEEEEEecc
Confidence 126999999999999997 7889999999876543
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-16 Score=150.87 Aligned_cols=178 Identities=16% Similarity=0.237 Sum_probs=131.8
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccC-CccchhhhHhhccc----------EEE-ecccchHHHHHHHHhhcc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR----------IYL-VGFYEEREFALYVSSISN 74 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~-g~pli~~~l~~l~~----------i~v-v~~~~~~~i~~~~~~~~~ 74 (410)
.++.+|||||| .||||+. ..||+|+|++ |+||++|+++.+.. ++| ++.+..+.+.+++++. .
T Consensus 91 ~k~avViLAGG--~GTRmgs---~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~-~ 164 (488)
T 2i5k_A 91 SKLAVLKLNGG--LGTSMGC---VGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKY-S 164 (488)
T ss_dssp GGEEEEEECCC--BSGGGTC---CSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGG-C
T ss_pred CCceEEEEcCC--CcccCCC---CCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhc-c
Confidence 47889999999 9999985 8899999999 99999999999764 334 4547778889998874 4
Q ss_pred cCCccEEEeeCC------------------------CCCCcHHHHHHh-----HHHhcccCCCcEEEEcCCcccC-CChH
Q 015259 75 ELRIPVRYLRED------------------------KPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDVCCS-FPLP 124 (410)
Q Consensus 75 ~~~~~i~~i~~~------------------------~~~g~~~~l~~~-----~~~l~~~~~~~~lvl~~D~i~~-~~l~ 124 (410)
.++.++.++.|. .+.|+++++... ++.+.+...++++|+++|.+.. .++.
T Consensus 165 ~fg~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~ 244 (488)
T 2i5k_A 165 ANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLK 244 (488)
T ss_dssp SSSCEEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHH
T ss_pred ccCceEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHH
Confidence 567777776555 678999988743 3555323357999999999765 5675
Q ss_pred HHHHHHHhcCCceEEEEEecCcccccc-cceEEEcCCCCc--EEEEecCCCC--------ccccceeeeEEEEcHHHHHH
Q 015259 125 EMLDAHRNYGGMGTILVIKVSAESASQ-FGELVADPDTNE--LLHYTEKPET--------FVSDLINCGVYVFTPDIFNA 193 (410)
Q Consensus 125 ~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~v~~d~~~~~--v~~i~ekp~~--------~~~~l~~~Giy~~~~~~~~~ 193 (410)
++..|.+.++++++.+.+. .++.. ||.+..+ +++ +..+.+.+.. ......++|+|+|+.+.+..
T Consensus 245 -~L~~~~~~~a~~t~~v~~~--~~p~~~yG~Iv~~--dG~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~ 319 (488)
T 2i5k_A 245 -ILNHMIETGAEYIMELTDK--TRADVKGGTLISY--DGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKR 319 (488)
T ss_dssp -HHHHHHHSCCSEEEEEEEC--CGGGSSSCEEEEE--TTEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHH
T ss_pred -HHHHHHhcCCcEEEEEEEe--cCCCCceeEEEEE--CCcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHH
Confidence 6688888889989888876 55554 9988765 344 4443444432 22467899999999987654
Q ss_pred hh
Q 015259 194 IQ 195 (410)
Q Consensus 194 l~ 195 (410)
+.
T Consensus 320 ~l 321 (488)
T 2i5k_A 320 LI 321 (488)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-16 Score=134.87 Aligned_cols=183 Identities=14% Similarity=0.160 Sum_probs=120.8
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
++.+|||||| .|+||++ ||+|+|++|+|||+|+++.+.. |+|++.+..+.+.+++. .++.++..
T Consensus 5 ~~~~iIlA~G--~~~R~g~-----~K~l~~~~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~----~~~~~~~~ 73 (199)
T 2waw_A 5 RVTGVVLAAG--YSRRLGT-----PKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVLEKVE----LDGLDIVL 73 (199)
T ss_dssp CEEEEEEESS--CCTTTTS-----CGGGCEETTEEHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSC----CTTSEEEE
T ss_pred ceEEEEECCC--CCCCCCC-----CEEeCEeCccCHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhc----cCCCEEEE
Confidence 6899999999 9999964 9999999999999999999875 77777665556655543 23444333
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
.+....|++++++.+.+.+.. ..+.+++++||.++ ..++..+++. +.++++++... +
T Consensus 74 -~~~~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~---------------~-- 132 (199)
T 2waw_A 74 -VDDAGLGCSSSLKSALTWVDP-TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY---------------A-- 132 (199)
T ss_dssp -CCCCCTTCCCHHHHHHHTSCT-TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE---------------T--
T ss_pred -CCCcccCHHHHHHHHHHhhhc-cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec---------------C--
Confidence 234456888999999888731 24789999999985 4558888876 33444332211 1
Q ss_pred CCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
++- ..-++|+++.+..+.... . +. .+ ..++...
T Consensus 133 -g~~----------------~~P~~~~~~~l~~~~~~~-~-------------------------~~-~~-~~~l~~~-- 165 (199)
T 2waw_A 133 -NGI----------------GHPFWVSRGVFGDLAELH-G-------------------------DK-GV-WRLIESG-- 165 (199)
T ss_dssp -TEE----------------EEEEEEEGGGHHHHHTCS-S-------------------------TT-CH-HHHHHSS--
T ss_pred -Ccc----------------cCCEEEcHHHHHHHHhcC-C-------------------------CH-HH-HHHHHhC--
Confidence 110 011378888877665321 0 00 01 2333321
Q ss_pred CCceeEEec-cceeeecCCccchhhhhHHH
Q 015259 241 KKQLYTYET-MDFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 241 ~~~i~~~~~-~g~~~~i~t~~~~~~an~~~ 269 (410)
...+..++. .+.|.+|+||+||..+...+
T Consensus 166 ~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~ 195 (199)
T 2waw_A 166 RHGVRRIRVDADVPLDVDTWDDYERLLASV 195 (199)
T ss_dssp SSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred cccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence 235666665 46899999999999887654
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=131.16 Aligned_cols=105 Identities=21% Similarity=0.191 Sum_probs=66.6
Q ss_pred CcEEccCeEECCCCEECCCcEEC---CCcEECCCcEECCCCEEe-----------------eeEECCCCEECCCCEEEee
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIG---PNVSISANARIGAGVRLI-----------------SCIILDGVEIMENAVVTNA 348 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~-----------------~~~i~~~~~i~~~~~i~~~ 348 (410)
.+.+.+++.||+++.|+++|.|. +++.||++|.|++++.|. +++||+++.|+.++.+.++
T Consensus 24 ~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~ 103 (194)
T 3tv0_A 24 ESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYSQAM 103 (194)
T ss_dssp TSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEECCS
T ss_pred CCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeEeee
Confidence 44455555555555555555553 235666666666666663 2456666666666666666
Q ss_pred EECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEcc
Q 015259 349 IVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNV 402 (410)
Q Consensus 349 ~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~ 402 (410)
.|+++++|+.++.|.++ +.||++|+||++++| +++.|+++++|..
T Consensus 104 ~Ig~~~~Ig~~~~I~~g---------v~IG~~~~IgagsvV~~~~~Ip~~svv~G 149 (194)
T 3tv0_A 104 KMGDNNVIESKAYVGRN---------VILTSGCIIGACCNLNTFEVIPENTVIYG 149 (194)
T ss_dssp EECSSCEECTTCEECTT---------EEECSSCEECTTCEECCCEEECTTEEEES
T ss_pred eecccceecceeeECCe---------EEECCCCEECCCCEECCCcEECCCCEEEC
Confidence 77777777777777766 777777777777777 3556777766654
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-15 Score=128.30 Aligned_cols=121 Identities=16% Similarity=0.099 Sum_probs=85.5
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEee-eEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 366 (410)
++.+.+++.|++++.|++++.|.+++.||++|.|++++.|.+ ++||++|.|++++.|. +++|++++.|++++.+.+..
T Consensus 9 ~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~ 88 (192)
T 3mqg_A 9 TAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVY 88 (192)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCS
T ss_pred CcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEeccc
Confidence 455666666666666667777777777777777777777763 7778888888777775 67777787777777665421
Q ss_pred C------CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 367 D------FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 367 ~------~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
. .....+.++||++|+||.+++| .+|+|+++++|..++++..+
T Consensus 89 ~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~v 144 (192)
T 3mqg_A 89 NPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFAL 144 (192)
T ss_dssp SCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred CCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECcccCCCCE
Confidence 1 1122234777777777777776 57888899999999988654
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=133.24 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=79.7
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
++.+|||||| .|+||+ .||+|+|++|+|||+|+++.+.. ++|++.+..+.+.+++. .++.++..
T Consensus 5 ~~~~iIlA~G--~~~R~g-----~~K~l~~~~g~pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~----~~~~~~~~ 73 (197)
T 2wee_A 5 QITGVVLAAG--RSNRLG-----TPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRAAMA----LDGTDVVV 73 (197)
T ss_dssp EEEEEEEECC--CCTTTS-----SCGGGSEETTEEHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSC----CTTSEEEE
T ss_pred ceEEEEECCC--CcccCC-----CCeEcCeeCCccHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhc----cCCCEEEE
Confidence 6899999999 999995 49999999999999999999875 67776665556655543 23433322
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHH
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDA 129 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~ 129 (410)
.+....|++++++.+.+.+.. ..+.+++++||.++ ...+..+++.
T Consensus 74 -~~~~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~ 120 (197)
T 2wee_A 74 -VEDVERGCAASLRVALARVHP-RATGIVLMLGDQPQVAPATLRRIIDV 120 (197)
T ss_dssp -CC----CCHHHHHHHHTTSCT-TEEEEEEEETTCTTCCHHHHHHHHHH
T ss_pred -CCCcccCHHHHHHHHHHHhcc-cCCeEEEEeCCcCCCCHHHHHHHHhh
Confidence 233456899999999888731 13679999999975 3457888876
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-15 Score=134.00 Aligned_cols=215 Identities=14% Similarity=0.168 Sum_probs=127.6
Q ss_pred CCCCCCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcc
Q 015259 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISN 74 (410)
Q Consensus 1 ~~~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~ 74 (410)
|+..|| ++.+|||||| .|+||+. ..||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.+ +.
T Consensus 1 ~~~~~~-~~~~iIlA~G--~g~R~~~---~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~---- 69 (236)
T 1i52_A 1 MATTHL-DVCAVVPAAG--FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LP---- 69 (236)
T ss_dssp ----CC-CEEEEEEECC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SG----
T ss_pred CCCCCC-ceeEEEECCc--CccccCC---CCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HH----
Confidence 555554 5999999999 9999982 579999999999999999999863 66766654333333 22
Q ss_pred cCCc-cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHHhcCCceEEEEEecCcccccc
Q 015259 75 ELRI-PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHRNYGGMGTILVIKVSAESASQ 151 (410)
Q Consensus 75 ~~~~-~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 151 (410)
.++. .+.++.. ..|..++++.+++.+. ..+.+++++||.++ + ..+..+++.+.+.++.. +++... .+.
T Consensus 70 ~~~~~~v~~~~~--~~g~~~~i~~al~~~~--~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~~~~--~~~-- 140 (236)
T 1i52_A 70 LANHPQITVVDG--GDERADSVLAGLKAAG--DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPV--RDT-- 140 (236)
T ss_dssp GGGCTTEEEEEC--CSSHHHHHHHHHHTST--TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEEEEC--CSC--
T ss_pred hcCCCCEEEECC--CCCHHHHHHHHHHhcC--CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEEEec--ccc--
Confidence 2222 4555543 3578899999888773 13679999999875 3 34788888776544232 333333 111
Q ss_pred cceEEEcCCC-CcEEEEecCCCCccccceee-eEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCee
Q 015259 152 FGELVADPDT-NELLHYTEKPETFVSDLINC-GVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (410)
Q Consensus 152 ~~~v~~d~~~-~~v~~i~ekp~~~~~~l~~~-Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (410)
+ ...+ ++ +.+....+. ..+... +.++|+.+.+ +.+....+. +..
T Consensus 141 ~--~~~~-~~~~~i~~~~~~-----~~i~~~~~p~~f~~~~l~~~~~~~~~~-------------------------g~~ 187 (236)
T 1i52_A 141 M--KRAE-PGKNAIAHTVDR-----NGLWHALTPQFFPRELLHDCLTRALNE-------------------------GAT 187 (236)
T ss_dssp E--EEEC-TTSSSEEEEECC-----TTCEEEEEEEEEEHHHHHHHHHHHHHT-------------------------TCC
T ss_pred E--EEEc-CCCCceeeccCh-----HhheeeeCCceecHHHHHHHHHHHHhc-------------------------CCC
Confidence 1 1123 23 455443221 222222 4556777554 333321110 100
Q ss_pred eec--cchhccccCCCceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 229 RLD--QDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 229 ~l~--~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
+. ..++..+ +..+..++..+.|.+|+||+||..+...+..
T Consensus 188 -~td~~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~ 229 (236)
T 1i52_A 188 -ITDEASALEYC--GFHPQLVEGRADNIKVTRPEDLALAEFYLTR 229 (236)
T ss_dssp -CCSHHHHHHHT--TCCCEEEECCTTCCCCCSHHHHHHHHHHHCC
T ss_pred -cccHHHHHHHc--CCCEEEEecCccccccCCHHHHHHHHHHHHH
Confidence 10 1222221 3467777777789999999999998876543
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=131.79 Aligned_cols=65 Identities=22% Similarity=0.054 Sum_probs=33.5
Q ss_pred ECCCCEECCCcEECC--CcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE----eeEECCCCEECCCcEE
Q 015259 298 VHPSAKIHPTAKIGP--NVSISANARIGAGVRLI-SCIILDGVEIMENAVVT----NAIVGWKSSIGRWSRV 362 (410)
Q Consensus 298 i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~----~~~i~~~~~i~~~~~i 362 (410)
+++++.|++++.|.+ ++.||++|.|+++|.|. +++||++|.|+.++.|. +++|+++|.|++++.|
T Consensus 35 ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I 106 (205)
T 3vbi_A 35 VGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIV 106 (205)
T ss_dssp ECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred ECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEE
Confidence 333444444444443 45555555555555554 45555555555555552 2555555555555555
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-15 Score=125.86 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=87.4
Q ss_pred CcEEccCeEECCCCEECCCcEECCC---cEECCCcEECCCCEEe-----eeEECCCCEECCCCEEEeeEECCCCEECCCc
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLI-----SCIILDGVEIMENAVVTNAIVGWKSSIGRWS 360 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 360 (410)
++.+.+++.||+++.|++++.|.++ ++||++|.|++++.|. +++||++|.|++++.|.+++|+++|+||.++
T Consensus 24 ~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~ 103 (173)
T 1xhd_A 24 YVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGS 103 (173)
T ss_dssp TCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTTC
T ss_pred CCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEEcCCC
Confidence 5666677788888888888888754 7899999999999997 7889999999999999999999999999999
Q ss_pred EEccCCCCCcceeeeEECCCCEECCCcEEc-ceEEcCCcEEc
Q 015259 361 RVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLN 401 (410)
Q Consensus 361 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~v~~~~~v~ 401 (410)
.|.++ +.||++++|++++++. +..|++++++.
T Consensus 104 ~i~~~---------~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~ 136 (173)
T 1xhd_A 104 IILDG---------AEIGEGAFIGAGSLVSQGKKIPPNTLAF 136 (173)
T ss_dssp EECTT---------CEECTTCEECTTCEECTTCEECTTEEEE
T ss_pred EEcCC---------CEECCCCEECCCCEECCCcEeCCCCEEE
Confidence 98877 8999999999999884 56777777774
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-15 Score=128.13 Aligned_cols=105 Identities=20% Similarity=0.229 Sum_probs=71.4
Q ss_pred CcEEccCeEECCCCEECCCcEECC---CcEECCCcEECCCCEEe------eeEECCCCEECCCCEEEeeEECCCCEECCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGP---NVSISANARIGAGVRLI------SCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~------~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (410)
++.+.+++.||+++.|++++.|.+ ++.||++|.|+++|.|. +++||++|.|++++.|.+++|+++|+||.+
T Consensus 45 ~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~ 124 (191)
T 3ixc_A 45 NARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAFVGMG 124 (191)
T ss_dssp TCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTCEECTT
T ss_pred CCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCCEECCC
Confidence 445555556666666666666652 23667777777777776 677777777777777777777777777777
Q ss_pred cEEccCCCCCcceeeeEECCCCEECCCcEEc-ceEEcCCcEEcc
Q 015259 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNV 402 (410)
Q Consensus 360 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~v~~~~~v~~ 402 (410)
+.|.++ +.||++|+|+++++|. +..|++++++..
T Consensus 125 ~~I~~~---------~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~G 159 (191)
T 3ixc_A 125 SIVMDR---------AVMEEGSMLAAGSLLTRGKIVKSGELWAG 159 (191)
T ss_dssp CEECTT---------CEECTTCEECTTCEECTTCEECTTEEEEE
T ss_pred CEEeCC---------eEECCCCEECCCCEECCCcCcCCCeEEEC
Confidence 777776 7777777777777773 466666666543
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-15 Score=125.26 Aligned_cols=106 Identities=11% Similarity=0.125 Sum_probs=88.8
Q ss_pred cCeEECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEEE-----eeEECCCCEECCCcEEcc
Q 015259 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVVT-----NAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~ 364 (410)
+.+.|++++.|++++.|.+++.||++|.|++++.|.. ++||++|.|+++|.|. +++|++++.|+.++.|.+
T Consensus 11 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~ 90 (173)
T 1xhd_A 11 KKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHS 90 (173)
T ss_dssp BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEES
T ss_pred CCCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeC
Confidence 3567888888888888888899999999999999974 7999999999999998 799999999999999987
Q ss_pred CCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEc--ccCCCccc
Q 015259 365 EGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLN--VSVHQEII 409 (410)
Q Consensus 365 ~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~--~~~~~~~~ 409 (410)
++||++|+|++++++ .+++|+++++|. .++++..+
T Consensus 91 ----------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~v 134 (173)
T 1xhd_A 91 ----------CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTL 134 (173)
T ss_dssp ----------CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEE
T ss_pred ----------CEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCE
Confidence 788888888888877 466677777777 45666543
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.2e-15 Score=127.18 Aligned_cols=106 Identities=23% Similarity=0.260 Sum_probs=90.4
Q ss_pred CcEEccCeEECCCCEECCCcEECCCc---EECCCcEECCCCEE------------eeeEECCCCEECCCCEEEeeEECCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNV---SISANARIGAGVRL------------ISCIILDGVEIMENAVVTNAIVGWK 353 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~---~ig~~~~i~~~~~i------------~~~~i~~~~~i~~~~~i~~~~i~~~ 353 (410)
.+.+.+++.||+++.|++++.|.+++ .||++|.|++++.| .+++||++|.|++++.|.+++|+++
T Consensus 27 ~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~ 106 (187)
T 3r3r_A 27 SSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNR 106 (187)
T ss_dssp TCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEECSS
T ss_pred CCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEECCC
Confidence 55666777888888888888887644 89999999999999 6789999999999999999999999
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc-ceEEcCCcEEccc
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 403 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~v~~~~~v~~~ 403 (410)
|+||.++.|.++ +.||++++|+++++|. +..|++++++...
T Consensus 107 ~~Ig~~~~I~~~---------~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~ 148 (187)
T 3r3r_A 107 VLVGMGSIVLDG---------AIIEDDVMIGAGSLVPQHKRLESGYLYLGS 148 (187)
T ss_dssp EEECTTCEECTT---------CEECSSEEECTTCEECTTCEECTTEEEETT
T ss_pred CEECCCCEECCC---------CEECCCCEECCCCEECCCcCcCCCcEEEec
Confidence 999999999887 8999999999999994 5788888876553
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.3e-15 Score=125.06 Aligned_cols=104 Identities=25% Similarity=0.280 Sum_probs=92.9
Q ss_pred CcEEccCeEECCCCEECCCcEECCC---cEECCCcEECCCCEEe-----eeEECCCCEECCCCEEEeeEECCCCEECCCc
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLI-----SCIILDGVEIMENAVVTNAIVGWKSSIGRWS 360 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 360 (410)
++.+.+++.||+++.|++++.|.++ +.||++|.|++++.|. +++||++|.|++++.|.+++|+++|+||.++
T Consensus 22 ~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~ 101 (173)
T 1v3w_A 22 NAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISS 101 (173)
T ss_dssp TSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTTC
T ss_pred CCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCEECCCC
Confidence 5667778888999999999988854 8999999999999997 5899999999999999999999999999999
Q ss_pred EEccCCCCCcceeeeEECCCCEECCCcEEc-ceEEcCCcEEc
Q 015259 361 RVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLN 401 (410)
Q Consensus 361 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~v~~~~~v~ 401 (410)
.|.++ +.||++++|++++++. ++.|++++++.
T Consensus 102 ~i~~~---------~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~ 134 (173)
T 1v3w_A 102 VILDG---------AKIGDHVIIGAGAVVPPNKEIPDYSLVL 134 (173)
T ss_dssp EECTT---------CEECSSEEECTTCEECTTCEECTTEEEE
T ss_pred EEeCC---------CEECCCCEECCCCEECCCcEeCCCcEEE
Confidence 99987 9999999999999995 57888888774
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=127.42 Aligned_cols=103 Identities=26% Similarity=0.318 Sum_probs=89.3
Q ss_pred CcEEccCeEECCCCEECCCcEECC----CcEECCCcEECCCCEEee---------------eEECCCCEECCCCEEEe-e
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGP----NVSISANARIGAGVRLIS---------------CIILDGVEIMENAVVTN-A 348 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~~---------------~~i~~~~~i~~~~~i~~-~ 348 (410)
.+.+.+++.||+++.|++++.|.. .++||++|.|+++|.|.. ++||++|.|++++.|.. +
T Consensus 51 ~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~v 130 (213)
T 3kwd_A 51 FSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPA 130 (213)
T ss_dssp TSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEEE
T ss_pred CCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCCC
Confidence 567778889999999999999863 589999999999999974 88999999999999996 9
Q ss_pred EECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 349 IVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 349 ~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+|+++|+||+++.|.+ ++||++|+|+++++|.+++|+++..|+
T Consensus 131 ~Ig~~v~IG~~a~I~~----------~~Ig~~~~Igags~V~~~~i~~~~~v~ 173 (213)
T 3kwd_A 131 YIGDGCFIGFRSTVFN----------ARVGAGCVVMMHVLIQDVEIPPGKYVP 173 (213)
T ss_dssp EECTTCEECTTCEEEE----------EEECTTCEECSSCEEESCEECTTBEEC
T ss_pred EECCCCEECCCCEEeC----------cEECCCCEEcCCCEECCcEeCCCCEEC
Confidence 9999999999999987 899999999999999655555555444
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=132.35 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=26.1
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||++++||.++.| .+++|+++++|..++|+..+
T Consensus 141 v~Igd~~~Ig~~a~V~~~v~IG~~a~Ig~~s~V~~dvp~~~~ 182 (270)
T 1j2z_A 141 IEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCT 182 (270)
T ss_dssp CEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEE
T ss_pred cEECCCeEEecCCEECCCcEeCCceEEecCcEecccCCCCeE
Confidence 666777777777666 57778888888888887654
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=128.64 Aligned_cols=207 Identities=15% Similarity=0.175 Sum_probs=122.6
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHH-HHHHHHhhcccCCccE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEERE-FALYVSSISNELRIPV 80 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~-i~~~~~~~~~~~~~~i 80 (410)
-|.||||||| .|+||+. ..||+|+|++|+|||+|+++.+.+ |+|++.+.... +.+++ . ++..+
T Consensus 13 ~~~aiILAaG--~s~Rm~~---~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~----~-~~~~~ 82 (234)
T 1vpa_A 13 MNVAILLAAG--KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRV----F-HEKVL 82 (234)
T ss_dssp CEEEEEEECC--CCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTC----C-CTTEE
T ss_pred cCeEEEEcCc--chhhcCC---CCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHh----c-cCCce
Confidence 3899999999 9999984 579999999999999999999863 67776654432 23221 1 22223
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
... ....+..++++.+++.+.....+.+++++||.++ ...+..+++.+.+.+ ..+.+.+. .+. +...+
T Consensus 83 ~~~--~gg~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~--~~i~~~~~--~~~----~~~~~ 152 (234)
T 1vpa_A 83 GIV--EGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETG--AATLALKN--SDA----LVRVE 152 (234)
T ss_dssp EEE--ECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHS--EEEEEEEC--CSE----EEEEE
T ss_pred EEe--CCCCcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcC--CEEEEEec--CCc----EEEEC
Confidence 322 2233477889888887742123567888899974 345888988876543 23333333 111 12234
Q ss_pred CCCCcEEEEecCCCCcccccee-eeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhcc
Q 015259 159 PDTNELLHYTEKPETFVSDLIN-CGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~~~~l~~-~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (410)
+++ + .+.++ ..+.. -.-++|+.+.+..+.+.. ++ ..+ . ..++..
T Consensus 153 -~~g-v-~~~~r-----~~~~~~~~p~~f~~~~l~~~~~~~-----------~~------------~~~---~-~~~~~~ 197 (234)
T 1vpa_A 153 -NDR-I-EYIPR-----KGVYRILTPQAFSYEILKKAHENG-----------GE------------WAD---D-TEPVQK 197 (234)
T ss_dssp -TTE-E-EEECC-----TTEEEEEEEEEEEHHHHHHHHTTC-----------CC------------CSS---S-HHHHHT
T ss_pred -CCC-c-ccCCh-----hHeeeecCCccccHHHHHHHHHhc-----------CC------------CCc---H-HHHHHH
Confidence 345 5 55443 11111 123367776654332210 00 000 0 122222
Q ss_pred ccCCCceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 238 LAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 238 l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
. +..+..+...+.|.+|+||+||..+...+..
T Consensus 198 ~--g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 229 (234)
T 1vpa_A 198 L--GVKIALVEGDPLCFKVTFKEDLELARIIARE 229 (234)
T ss_dssp T--TCCCEEEECCGGGCCCCSTTHHHHHHHHHHH
T ss_pred c--CCcEEEEECCchhcCCCCHHHHHHHHHHHhc
Confidence 1 3356666666789999999999998775543
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=124.66 Aligned_cols=115 Identities=22% Similarity=0.280 Sum_probs=87.0
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEE-----------------ee
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVT-----------------NA 348 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----------------~~ 348 (410)
..+.+++.|+|+|.|+++|.|.+++.||++|.|++++.|. +.+||++|.|+++++|. .+
T Consensus 7 ~k~~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~ 86 (194)
T 3tv0_A 7 EKTQKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPM 86 (194)
T ss_dssp -----CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCE
T ss_pred hhcCCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCce
Confidence 3456788999999999999999999999999999999995 47899999999999994 36
Q ss_pred EECCCCEECCCcEEccCCCCCccee-eeEECCCCEECCCcEE-cceEEcCCcEEccc--CCCccc
Q 015259 349 IVGWKSSIGRWSRVQAEGDFNAKLG-ITILGEAVGVEDEVVV-TNSIVLPNKTLNVS--VHQEII 409 (410)
Q Consensus 349 ~i~~~~~i~~~~~i~~~~~~~~~~~-~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~--~~~~~~ 409 (410)
+|++++.|+.++.+.+. ..| .+.|+.++.|+++++| .+|+|++|++|+++ +|+..+
T Consensus 87 ~Ig~~~~i~~~~~i~~~-----~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~sv 146 (194)
T 3tv0_A 87 IIGTNNVFEVGCYSQAM-----KMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTV 146 (194)
T ss_dssp EECSSCEECTTCEECCS-----EECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEE
T ss_pred EECCcceEecceeEeee-----eecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCE
Confidence 88999999888877651 000 0444444444455555 68899999999988 887754
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=131.22 Aligned_cols=119 Identities=15% Similarity=0.074 Sum_probs=64.5
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEE-------------eeeEECCCCEECCCCEEE--------eeE
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL-------------ISCIILDGVEIMENAVVT--------NAI 349 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-------------~~~~i~~~~~i~~~~~i~--------~~~ 349 (410)
.+.+++.|++++.|++++.|.+++.||++|.|++++.| .+++||++|.|++++.|. .++
T Consensus 33 ~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~~ 112 (265)
T 4e6u_A 33 IIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTK 112 (265)
T ss_dssp EECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEE
T ss_pred EECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCCCceE
Confidence 33444444444444444444445555555555555555 245555555555555554 244
Q ss_pred ECCCCEECCCcEEccCCC---------CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 350 VGWKSSIGRWSRVQAEGD---------FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 350 i~~~~~i~~~~~i~~~~~---------~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
|++++.|+.++.|..... .....+.++||++|+||.+++| .+++|+++++|..++|+..+
T Consensus 113 IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~~svV~~dvp~~~~ 188 (265)
T 4e6u_A 113 IGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILKDVPAYVM 188 (265)
T ss_dssp ECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEE
T ss_pred EccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECCCCEEcCCCEEcccCCCCeE
Confidence 444444444433322110 0001112788888888888777 46778888888888888654
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=126.23 Aligned_cols=106 Identities=26% Similarity=0.243 Sum_probs=89.4
Q ss_pred ccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEE------eeEECCCCEECCCcEE
Q 015259 293 IGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVT------NAIVGWKSSIGRWSRV 362 (410)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~------~~~i~~~~~i~~~~~i 362 (410)
.+.+.|++++.|++++.|.+++.||++|.|++++.|. +++||++|.|+++|.|. +++|+++|.|++++.|
T Consensus 31 ~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i 110 (191)
T 3ixc_A 31 GVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCIL 110 (191)
T ss_dssp TBCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEE
T ss_pred CCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEE
Confidence 3467888888888888888889999999999999996 34899999999999998 8999999999999999
Q ss_pred ccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEc--ccCCCcc
Q 015259 363 QAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLN--VSVHQEI 408 (410)
Q Consensus 363 ~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~--~~~~~~~ 408 (410)
.+ ++||++|+|+++++| .+|+|+++++|. .++++..
T Consensus 111 ~~----------~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~ 155 (191)
T 3ixc_A 111 HA----------CTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGE 155 (191)
T ss_dssp CS----------CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTE
T ss_pred EC----------CEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCe
Confidence 87 788888888888777 466777777777 5566654
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=131.03 Aligned_cols=119 Identities=16% Similarity=0.149 Sum_probs=65.6
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEE--------------eeeEECCCCEECCCCEEEe--------e
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL--------------ISCIILDGVEIMENAVVTN--------A 348 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i--------------~~~~i~~~~~i~~~~~i~~--------~ 348 (410)
.+.+++.||+++.|++++.|.+++.||++|.|++++.| .+++||++|.|++++.|.. +
T Consensus 30 ~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~ 109 (266)
T 3r0s_A 30 YVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFT 109 (266)
T ss_dssp EECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTSEE
T ss_pred EECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCCccE
Confidence 33344444444444444444455555666666666666 3555666666666666542 4
Q ss_pred EECCCCEECCCcEEccCCC--------CCc-ceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 349 IVGWKSSIGRWSRVQAEGD--------FNA-KLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 349 ~i~~~~~i~~~~~i~~~~~--------~~~-~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+|++++.|+.++.|..... ... ..+.+.||++|+||.++.| .+++|+++++|..++|+..+
T Consensus 110 ~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~~dvp~~~~ 186 (266)
T 3r0s_A 110 RIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQDIVPFCL 186 (266)
T ss_dssp EECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCBBCSCBCTTEE
T ss_pred EECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEECCCCEEccCCeEecccCCCeE
Confidence 4555544444444432211 001 1122788888888888777 45667777777778887654
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=132.66 Aligned_cols=117 Identities=17% Similarity=0.133 Sum_probs=61.1
Q ss_pred ccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-------------eeEECCCCEECCCCEEEe--------eEEC
Q 015259 293 IGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVTN--------AIVG 351 (410)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~--------~~i~ 351 (410)
.+++.||+++.|++++.|.+++.||++|.|++++.|+ +++||++|.|+++|.|.. ++|+
T Consensus 50 ~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~g~~~~~~~~~IG 129 (283)
T 4eqy_A 50 GSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGTVQDAGVTTLG 129 (283)
T ss_dssp CTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCEECTTEEEECCCTTTTSEEEEC
T ss_pred CCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEECCCcccCcceeEccceecCCCceEEC
Confidence 3334444444444444444444455555555555551 344555555555555542 4444
Q ss_pred CCCEECCCcEEccCCC---------CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 352 WKSSIGRWSRVQAEGD---------FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 352 ~~~~i~~~~~i~~~~~---------~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
++|.|+.++.|..... .....+.++||++|+||.++.| .+++|+++++|..++|+..+
T Consensus 130 ~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~~s~V~~dvp~~~~ 203 (283)
T 4eqy_A 130 DDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALVQDIPPFVI 203 (283)
T ss_dssp SSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEE
T ss_pred CCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECCCcEECCCCeEecccCCCcE
Confidence 4444444443322110 0011122778888888888777 46677778888888887654
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=130.02 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=51.8
Q ss_pred CcEECCCcEECCCCEEe-------eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEEC
Q 015259 313 NVSISANARIGAGVRLI-------SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVE 384 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~-------~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~ 384 (410)
.+.||++|.|++++.|. .++||++|.|+.++.|. +++|++++.++.++.+.++ +.||++|+||
T Consensus 79 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~---------v~Igd~~~Ig 149 (259)
T 3hsq_A 79 KTVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGH---------VTLGNFAFIS 149 (259)
T ss_dssp CEEECSSCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT---------CEECSSCEEC
T ss_pred cEEECCCcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCc---------cEECCCcEEe
Confidence 34444444444444443 34444444444444443 3444444444444444443 7888888888
Q ss_pred CCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 385 DEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 385 ~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
.+++| .+++|+++++|..++|+..+
T Consensus 150 ~~a~V~~~v~Ig~~~~Vg~~s~V~~dvp~~~~ 181 (259)
T 3hsq_A 150 GLVAVHQFCFVGDYSMVAGLAKVVQDVPPYST 181 (259)
T ss_dssp SSEEECTTCEECTTCEECSSEEECSBBCTTEE
T ss_pred CCCEECCCCEECCCCEECCCCEEcccCCCCcE
Confidence 88777 57788888888889988754
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=124.58 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=86.0
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEE------------EeeEECCCCEECC
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVV------------TNAIVGWKSSIGR 358 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i------------~~~~i~~~~~i~~ 358 (410)
...+++++.|++++.|.+++.||++|.|++++.|.. ++||++|.|++++.| .+++|+++|.|++
T Consensus 15 ~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~ 94 (187)
T 3r3r_A 15 FPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGH 94 (187)
T ss_dssp CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECT
T ss_pred CcccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECC
Confidence 456777777777777777888888888888888862 599999999999999 5799999999999
Q ss_pred CcEEccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEc--ccCCCccc
Q 015259 359 WSRVQAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLN--VSVHQEII 409 (410)
Q Consensus 359 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~--~~~~~~~~ 409 (410)
++.|.+ ++||++|+||++++| .+++|+++++|. .++++..+
T Consensus 95 ~~~i~~----------~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~v 144 (187)
T 3r3r_A 95 KVMLHG----------CTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYL 144 (187)
T ss_dssp TCEEES----------CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEE
T ss_pred CCEEeC----------cEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcE
Confidence 999987 788888888888877 467777788887 56666543
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=125.59 Aligned_cols=103 Identities=15% Similarity=0.277 Sum_probs=78.1
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
++.+|||||| .|+||+ ..||+|+|++|+|||+|+++.+.. |+|++.+..+.+ . .++.. ++
T Consensus 6 ~~~~iILAgG--~s~Rmg----~~~K~ll~i~G~pli~~~l~~l~~~~~~ivvv~~~~~~~~----~----~~~~~--~v 69 (201)
T 1e5k_A 6 TITGVVLAGG--KARRMG----GVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIY----Q----ASGLK--VI 69 (201)
T ss_dssp SEEEEEECCC--CCSSSC----SSCGGGSEETTEEHHHHHHHHHHHHCSCEEEECSSSHHHH----H----TTSCC--EE
T ss_pred cceEEEEcCC--CCCcCC----CCCCceeeECceeHHHHHHHHHHhhCCEEEEEcCCcHHHH----h----hcCCe--EE
Confidence 6999999999 999997 259999999999999999999875 777777654332 1 13333 33
Q ss_pred eCC-CC-CCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHH
Q 015259 84 RED-KP-HGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDA 129 (410)
Q Consensus 84 ~~~-~~-~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~ 129 (410)
.+. .. .|++++++.+.+.+. .+.+++++||.++ . ..+..+++.
T Consensus 70 ~~~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 70 EDSLADYPGPLAGMLSVMQQEA---GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp CCCTTCCCSHHHHHHHHHHHCC---SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred ecCCCCCCCHHHHHHHHHHhCC---CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 332 23 689999999998885 4689999999964 3 347777765
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=126.42 Aligned_cols=104 Identities=20% Similarity=0.202 Sum_probs=90.2
Q ss_pred CcEEcc--CeEECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEE-----------------
Q 015259 289 NATIIG--DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVV----------------- 345 (410)
Q Consensus 289 ~~~i~~--~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i----------------- 345 (410)
++.+.+ .+.||+++.|+++|.|.+++.||++|.|++++.|. +++||++|.|+++|.|
T Consensus 44 ~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~ 123 (205)
T 3vbi_A 44 KASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTI 123 (205)
T ss_dssp TSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSCCSTTS
T ss_pred CeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCcccccccCccc
Confidence 455655 68889999999999998899999999999999993 4999999999999999
Q ss_pred ---------EeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 346 ---------TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 346 ---------~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
.+++|+++|+||.+|.|.++ +.||++|+|+++++|.+. |.+++++..
T Consensus 124 ~~~~~~~~~~~v~IG~~v~IG~~~~I~~g---------v~Ig~~~~Ig~gsvV~~~-v~~~~v~~G 179 (205)
T 3vbi_A 124 PNQYKNVKTGKVILKKHVIIGAHSIIFPN---------VVIGEGVAVGAMSMVKES-LDDWYIYVG 179 (205)
T ss_dssp CGGGCCCEECCEEECTTCEECTTCEECSS---------CEECTTCEECTTCEECSC-BCTTEEEET
T ss_pred ccccceeccCCEEECCCCEECCCCEEcCC---------CEECCCCEEcCCCEECCc-cCCCeEEEc
Confidence 36899999999999999988 999999999999999665 567766654
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=124.64 Aligned_cols=106 Identities=25% Similarity=0.292 Sum_probs=88.7
Q ss_pred CcEEccCeEECCCCEECCCcEECC---CcEECCCcEECCCCEEeee------------EECCCCEECCCCEEEeeEECCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGP---NVSISANARIGAGVRLISC------------IILDGVEIMENAVVTNAIVGWK 353 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~~~------------~i~~~~~i~~~~~i~~~~i~~~ 353 (410)
.+.+.+++.||+++.|++++.|.+ .+.||++|.|++++.|..+ +||++|.|+++|.|.+++|+++
T Consensus 31 ~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~ 110 (189)
T 3r1w_A 31 SSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNR 110 (189)
T ss_dssp TCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEECSS
T ss_pred CCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEECCC
Confidence 456666777888888888888863 3588999999999999754 8999999999999999999999
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc-ceEEcCCcEEccc
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 403 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~v~~~~~v~~~ 403 (410)
|+||.++.|.++ +.||++|+|+++++|. +..|++++++..+
T Consensus 111 ~~Ig~~~~i~~~---------v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G~ 152 (189)
T 3r1w_A 111 VLIGMKSMIMDG---------AIVEDEVIVAAGATVSPGKVLESGFVYMGT 152 (189)
T ss_dssp EEECTTCEECTT---------CEECSSCEECTTCEECTTCEECTTEEEETT
T ss_pred cEECCCCEEcCC---------CEECCCCEEccCCEECCCCEeCCCCEEECC
Confidence 999999999887 8999999999999994 5788888887553
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-15 Score=130.99 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=107.7
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
|.++.+|||||| .|+||+ .||+|+|++|+|||+|+++.+.. |+|++.+... +++ . + +.
T Consensus 12 ~~~~~~iILA~G--~g~Rmg-----~~K~ll~i~g~pll~~~l~~l~~~~~~i~vv~~~~~~---~~~----~--~--~~ 73 (201)
T 2e8b_A 12 SKVNTCYVLAGG--KSKRFG-----EDKLLYEIKGKKVIERVYETAKSVFKEVYIVAKDREK---FSF----L--N--AP 73 (201)
T ss_dssp CSCCEEEEEEES--SCCCCS-----TTHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCSGG---GGG----G--T--CC
T ss_pred ccCceEEEECCC--CCccCC-----CCcccceECceEHHHHHHHHHHHhCCEEEEEeCcHHH---hhc----C--C--ce
Confidence 446799999999 999997 48999999999999999999876 6666665443 111 1 2 33
Q ss_pred Eee-CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CC-ChHH-HHHHHHhcCCceEEEEEecCcccccccceEEE
Q 015259 82 YLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SF-PLPE-MLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (410)
Q Consensus 82 ~i~-~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~-~l~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~ 157 (410)
++. +....|++++++.+.+.+. .+.+++++||.++ +. .+.. ++ + .++++. .
T Consensus 74 ~v~~~~~~~g~~~~i~~al~~~~---~~~~lv~~~D~P~i~~~~i~~~l~----~--~~~~v~----------------~ 128 (201)
T 2e8b_A 74 VVLDEFEESASIIGLYTALKHAK---EENVFVLSGDLPLMKKETVLYVLE----N--FKEPVS----------------V 128 (201)
T ss_dssp EEECCCSSCCHHHHHHHHHHHCS---SSEEEEEETTCTTCCHHHHHHHHH----T--CCSSEE----------------E
T ss_pred EEecCCCCCCcHHHHHHHHHHcC---CCCEEEEeCCcCcCCHHHHHHHHh----c--CCEEEE----------------e
Confidence 443 3456799999999998875 4789999999975 32 2555 44 1 121110 0
Q ss_pred cCCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhcc
Q 015259 158 DPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (410)
Q Consensus 158 d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (410)
. +++ .....|+| |++++++.+.+.... +.+.+ .++++.
T Consensus 129 ~--~g~-------------~~p~~giy-~~~~~~~~l~~~~~~-------------------------g~~~~-~~~l~~ 166 (201)
T 2e8b_A 129 A--KTE-------------KLHTLVGV-YSKKLLEKIEERIKK-------------------------GDYRI-WALLKD 166 (201)
T ss_dssp E--ESS-------------SEEEEEEE-EEGGGHHHHHHHHHT-------------------------TCCCH-HHHHHH
T ss_pred c--CCc-------------eeeEEEEE-eChhHHHHHHHHHHc-------------------------CCchH-HHHHHH
Confidence 1 111 13457999 999988877642210 11122 445543
Q ss_pred ccCCCceeEEec--cceee--ecCCccchhhhhHH
Q 015259 238 LAGKKQLYTYET--MDFWE--QIKTPGMSLKCSGL 268 (410)
Q Consensus 238 l~~~~~i~~~~~--~g~~~--~i~t~~~~~~an~~ 268 (410)
+ .+..+.. .+.|. +||||+||.++...
T Consensus 167 ~----~~~~~~~~~~~~~~~~dintpedl~~~~~~ 197 (201)
T 2e8b_A 167 V----GYNEVEIPEELRYTLLNMNTKEDLKRILAI 197 (201)
T ss_dssp H----CCEEEECCGGGGGGGCCSCCC---------
T ss_pred C----CeEEeccccccchhhcCCCCHHHHHHHHHH
Confidence 2 3444444 35789 99999999887654
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-14 Score=127.56 Aligned_cols=103 Identities=20% Similarity=0.300 Sum_probs=85.5
Q ss_pred CcEEccCeEECCCCEECCCcEECCC----cEECCCcEECCCCEEe------------------------eeEECCCCEEC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPN----VSISANARIGAGVRLI------------------------SCIILDGVEIM 340 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~----~~ig~~~~i~~~~~i~------------------------~~~i~~~~~i~ 340 (410)
++.+.+++.||+++.|+++|.|.+. ++||++|.|+++|.|. +++||++|.|+
T Consensus 71 ~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig 150 (247)
T 1qre_A 71 QASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLA 150 (247)
T ss_dssp TCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEEC
T ss_pred CCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEEC
Confidence 4556667788888888888888753 3899999999999996 28899999999
Q ss_pred CCCEEEe-eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 341 ENAVVTN-AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 341 ~~~~i~~-~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
++|.|.+ ++|+++|+||.++.|.+ +.||++|+|+++++|+++.|+++++|+
T Consensus 151 ~~~~I~~~~~Ig~~v~IG~~a~I~~----------v~Ig~~~~IgagsvV~~~~I~~~~~v~ 202 (247)
T 1qre_A 151 HQSQVHGPAAVGDDTFIGMQAFVFK----------SKVGNNCVLEPRSAAIGVTIPDGRYIP 202 (247)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEE----------EEECTTCEECTTCEEESCEECTTBEEC
T ss_pred CCCEEcCCcEECCCCEECCCCEEec----------eEECCCCEECCCCEECCeEeCCCCEEC
Confidence 9999997 99999999999999987 899999999999999555555555543
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=121.68 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=86.3
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEEE-----eeEECCCCEECCCcEEccC
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVVT-----NAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~ 365 (410)
...+++++.|++++.|.+++.||++|.|++++.|.. ++||++|.|+++|.|. +++|++++.|++++.|.+
T Consensus 10 ~~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~- 88 (173)
T 1v3w_A 10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHG- 88 (173)
T ss_dssp CCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEES-
T ss_pred CCEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECC-
Confidence 346777777777777777888999999999998874 8999999999999998 599999999999999977
Q ss_pred CCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcc--cCCCccc
Q 015259 366 GDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNV--SVHQEII 409 (410)
Q Consensus 366 ~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~--~~~~~~~ 409 (410)
++||++++|++++.+ .+++|+++++|.+ ++++..+
T Consensus 89 ---------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~ 132 (173)
T 1v3w_A 89 ---------AKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSL 132 (173)
T ss_dssp ---------CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEE
T ss_pred ---------CEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcE
Confidence 788888888887776 4777788888873 5666543
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.9e-14 Score=138.03 Aligned_cols=181 Identities=13% Similarity=0.202 Sum_probs=133.9
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCcccccc---CCccchhhhHhhcc--------------c---EEEecccchHHHH
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACK--------------R---IYLVGFYEEREFA 66 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi---~g~pli~~~l~~l~--------------~---i~vv~~~~~~~i~ 66 (410)
.++.+|||||| .||||+. ..||+|+|+ .|+|+++++++.+. . +++...+..+.+.
T Consensus 101 ~kvavViLAGG--~GTRLg~---~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~ 175 (505)
T 1jv1_A 101 NKVAVLLLAGG--QGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTK 175 (505)
T ss_dssp TCEEEEEECCC--CCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHH
T ss_pred CceEEEEEcCC--ccccCCC---CCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHH
Confidence 47999999999 9999964 889999999 79999999988742 1 4555666678889
Q ss_pred HHHHhhcccCCc---cEEEeeC---------------------CCCCCcHHHHHHhHH-----HhcccCCCcEEEEcCCc
Q 015259 67 LYVSSISNELRI---PVRYLRE---------------------DKPHGSAGALYNFRD-----LIMEDNPSHIFLLNCDV 117 (410)
Q Consensus 67 ~~~~~~~~~~~~---~i~~i~~---------------------~~~~g~~~~l~~~~~-----~l~~~~~~~~lvl~~D~ 117 (410)
+++++. ..+++ +|.+..| ..+.|+++.+..+.. .+.+...++|+|+++|.
T Consensus 176 ~~f~~~-~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn 254 (505)
T 1jv1_A 176 EFFTKH-KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDN 254 (505)
T ss_dssp HHHHHT-GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTB
T ss_pred HHHHhh-hhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCc
Confidence 998873 45665 4665543 257788888875542 33222347899999999
Q ss_pred c-cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCc--EEEEecCCCC----------ccccceeeeEE
Q 015259 118 C-CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE--LLHYTEKPET----------FVSDLINCGVY 184 (410)
Q Consensus 118 i-~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~--v~~i~ekp~~----------~~~~l~~~Giy 184 (410)
+ ...+...++..|..+++++++.+.+.. .....+|++..+ +++ ++.+.++|.. ...+..++|+|
T Consensus 255 ~L~~~~d~~~lg~~~~~~~~~~~~v~~k~-~~~e~~Gvl~~~--dg~~~vvEy~E~p~~~~~~~~~~g~~~~~~~N~~~~ 331 (505)
T 1jv1_A 255 ILVKVADPRFIGFCIQKGADCGAKVVEKT-NPTEPVGVVCRV--DGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANH 331 (505)
T ss_dssp TTCCTTCHHHHHHHHHTTCSEEEEEEECC-STTCSCCEEEEE--TTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEE
T ss_pred cccccchHHHHHHHHHcCCCEEEEEEEcc-CCccCcceEEEE--CCeEEEEEEeeCCHHHhhhcccccccccceeeEEEE
Confidence 7 677778899999999999998887521 455678988775 344 4555566531 12468899999
Q ss_pred EEcHHHHHHhhh
Q 015259 185 VFTPDIFNAIQG 196 (410)
Q Consensus 185 ~~~~~~~~~l~~ 196 (410)
+|+.++++.+.+
T Consensus 332 ~f~l~~L~~i~~ 343 (505)
T 1jv1_A 332 FFTVPFLRDVVN 343 (505)
T ss_dssp EEEHHHHHHHHH
T ss_pred EecHHHHHHHHH
Confidence 999999887754
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=133.30 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=100.6
Q ss_pred eeecCCccchhhhhHHHHhhhhhcCCCcccCCCCCCCcEEcc-CeEECCCCEECCCcEECCCcEECCCcEECCCCEEeee
Q 015259 253 WEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIG-DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISC 331 (410)
Q Consensus 253 ~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~ 331 (410)
-.+|..+.+|-...+..+.+|-....++... .++.+.+ ++.+++++.|++++.|++++.||++|+|+++|.|.+|
T Consensus 26 l~ri~al~~f~~v~~g~lgg~i~~e~nl~~~----~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~ 101 (334)
T 2pig_A 26 LRQVIAVTDFNDVKAGTSGGWVDADNVLSQQ----GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRA 101 (334)
T ss_dssp EEEEEESSCBTTBCTTCEEEEESSTTSBCSS----SSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESC
T ss_pred EEEEEEeeccccccCCccCCeEeccCCcccC----CceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeE
Confidence 4456666666555554444444332233222 3678888 8999999999999999999999999999999999999
Q ss_pred EECCCCEECCCCEEEeeEECCCCEECCCcEEccCCC------------------CCcceeeeEECCCCEECCCcEEcceE
Q 015259 332 IILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGD------------------FNAKLGITILGEAVGVEDEVVVTNSI 393 (410)
Q Consensus 332 ~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~------------------~~~~~~~~~i~~~~~i~~~~~v~~~~ 393 (410)
+|++++.|+++++|.+++|+++|.|+.++++.+++. .....+.++|+++|.|+.+++|.+++
T Consensus 102 ~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~~sv 181 (334)
T 2pig_A 102 DISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAF 181 (334)
T ss_dssp EEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEESEE
T ss_pred EEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEeCcE
Confidence 999999999999999888888888777777665432 11233335666666666666665444
Q ss_pred EcCCcEE
Q 015259 394 VLPNKTL 400 (410)
Q Consensus 394 v~~~~~v 400 (410)
|+.++.|
T Consensus 182 I~~~a~I 188 (334)
T 2pig_A 182 IEHRAEV 188 (334)
T ss_dssp ECTTCEE
T ss_pred EcCCCEE
Confidence 4433333
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-14 Score=127.92 Aligned_cols=112 Identities=25% Similarity=0.261 Sum_probs=87.0
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEE-eeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCCcceee
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRL-ISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGI 374 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~ 374 (410)
+.++++.|++++.|.+++.||++|+|++++.| .+++||++|.|+.++.|. +++|+++|.|++++.+.+....+...+
T Consensus 87 ~~~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~- 165 (240)
T 3r8y_A 87 LKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKP- 165 (240)
T ss_dssp CTTCSSEECTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCC-
T ss_pred ccCCCCEECCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCC-
Confidence 44667788888888888888888888888888 488889999999999997 899999999999999976433332222
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
++||++|+||.+++| .+|+|++|++|..++++..+
T Consensus 166 ~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~vp~~~v 207 (240)
T 3r8y_A 166 VIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTV 207 (240)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcCCCcE
Confidence 666666666666666 57788888888888887654
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=123.34 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=85.7
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEEee------------EECCCCEECCC
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVTNA------------IVGWKSSIGRW 359 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~------------~i~~~~~i~~~ 359 (410)
..+++++.|++++.|.+++.||++|.|++++.|. ++.||++|.|++++.|..+ +|+++|.|+++
T Consensus 20 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~ 99 (189)
T 3r1w_A 20 PKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQ 99 (189)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTT
T ss_pred CEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCC
Confidence 4577777777777777788899999999999985 3589999999999999764 99999999999
Q ss_pred cEEccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEc--ccCCCccc
Q 015259 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLN--VSVHQEII 409 (410)
Q Consensus 360 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~--~~~~~~~~ 409 (410)
+.|.+ ++||++|+||++++| .+|+|+++++|. .++++..+
T Consensus 100 ~~i~~----------~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~v 148 (189)
T 3r1w_A 100 AMLHG----------CTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFV 148 (189)
T ss_dssp CEEES----------CEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEE
T ss_pred CEEeC----------cEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCE
Confidence 99987 788888888888887 467788888887 56666543
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.7e-14 Score=121.17 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=72.7
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEE----------------EeeEEC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVV----------------TNAIVG 351 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i----------------~~~~i~ 351 (410)
.+.+.+++.||+++.|++++.|++++.||++|.|++++.|. ++.|+++|.|+.++.+ .+++|+
T Consensus 27 ~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig 106 (192)
T 3mqg_A 27 WVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVR 106 (192)
T ss_dssp TCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCSSCBTTBCCGGGCCCEEEC
T ss_pred CCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEecccCCccccccccccCCcEEC
Confidence 34444555555555555555555556666666666666663 5566666666666655 358999
Q ss_pred CCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 352 WKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 352 ~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
++|+||.++.|.++ +.||++++|+++++|.+. +.+++++..
T Consensus 107 ~~v~IG~~~~I~~g---------~~Ig~~~~IgagsvV~~~-vp~~~v~~G 147 (192)
T 3mqg_A 107 QGATLGANCTVVCG---------ATIGRYAFVGAGAVVNKD-VPDFALVVG 147 (192)
T ss_dssp TTCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEEET
T ss_pred CCcEECCCCEECCC---------CEECCCCEEcCCCEECcc-cCCCCEEEc
Confidence 99999999999998 999999999999999643 456665544
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=125.35 Aligned_cols=111 Identities=12% Similarity=0.115 Sum_probs=81.1
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc--EEEecccchHHHHHHHHhhcccCCccEEEee-
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR--IYLVGFYEEREFALYVSSISNELRIPVRYLR- 84 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~--i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~- 84 (410)
++.+|||||| .|+||++ ||+|+|++|+|||+|+++.+.. ++|++.+..+.+.+++. .+ + ++.
T Consensus 2 ~~~~iIlAgG--~g~Rmg~-----~K~l~~i~g~pll~~~l~~l~~~~ivvv~~~~~~~~~~~~~-----~~--~-~v~~ 66 (197)
T 3d5n_A 2 NIGVIILAAG--EGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDLEKIIIVGKYVNEMLPLLM-----DQ--I-VIYN 66 (197)
T ss_dssp CEEEEEECSC--CTTCCCS-----SGGGSBSSSSBHHHHHHHHTTTSBCCEEECTTHHHHGGGCT-----TS--C-EEEC
T ss_pred ceEEEEECCc--CcccCCC-----CeeeCEeCceEHHHHHHHHHHhCCEEEEECCCHHHHHHHhc-----CC--E-EEEC
Confidence 4899999999 9999975 8999999999999999999986 66665554444433321 22 3 343
Q ss_pred CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHHhcCCc
Q 015259 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHRNYGGM 136 (410)
Q Consensus 85 ~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~~~~~~ 136 (410)
+....|++++++.+++.+.. .+.+++++||.++ + ..+..+++.+ +.+++
T Consensus 67 ~~~~~G~~~si~~al~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~ 117 (197)
T 3d5n_A 67 PFWNEGISTSLKLGLRFFKD--YDAVLVALGDMPFVTKEDVNKIINTF-KPNCK 117 (197)
T ss_dssp TTGGGCHHHHHHHHHHHTTT--SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCS
T ss_pred CCCCCCHHHHHHHHHHhhcc--CCcEEEEeCCccccCHHHHHHHHHHh-cCCCc
Confidence 23356899999999988852 2679999999974 3 3477777765 33434
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-14 Score=127.25 Aligned_cols=119 Identities=12% Similarity=0.048 Sum_probs=66.4
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-------------eeEECCCCEECCCCEEEe--------eE
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVTN--------AI 349 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~--------~~ 349 (410)
.+.+++.|++++.|++++.|.+++.||++|.|++++.|. +++||++|.|++++.|.. ++
T Consensus 31 ~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~ 110 (262)
T 2qia_A 31 IVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTK 110 (262)
T ss_dssp EECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEE
T ss_pred EECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCCcCE
Confidence 333444444444444444444455555555555555553 355555555555555542 55
Q ss_pred ECCCCEECCCcEEccCCC---------CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 350 VGWKSSIGRWSRVQAEGD---------FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 350 i~~~~~i~~~~~i~~~~~---------~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
|++++.|+.++.|.++.. .....+.+.||++++||.++.| .+++|+++++|..++|+..+
T Consensus 111 IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~~ 186 (262)
T 2qia_A 111 VGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVI 186 (262)
T ss_dssp ECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSBBCTTEE
T ss_pred ECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCCEECCCCEEccCCEECCcCCCCeE
Confidence 555555555444433211 0011122667777777777766 57888888888888887754
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-14 Score=123.45 Aligned_cols=97 Identities=16% Similarity=0.254 Sum_probs=82.0
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-----eeEECCCCEECCCCEEEe---------------eEECCCC
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-----SCIILDGVEIMENAVVTN---------------AIVGWKS 354 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------------~~i~~~~ 354 (410)
...+++++.|++++.|.+++.||++|.|++++.|. +++||++|.|+++|.|.. ++|+++|
T Consensus 39 ~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v 118 (213)
T 3kwd_A 39 EPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNV 118 (213)
T ss_dssp CCEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTC
T ss_pred CCcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCc
Confidence 44677777777777777888899999999999885 479999999999999984 8999999
Q ss_pred EECCCcEEccCCCCCcceeeeEECCCCEECCCcEE------cceEEcCCcEE
Q 015259 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV------TNSIVLPNKTL 400 (410)
Q Consensus 355 ~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v------~~~~v~~~~~v 400 (410)
.|+.++.|.++ ++||++|+||++++| .+|+|+++++|
T Consensus 119 ~Ig~~~~I~~~---------v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V 161 (213)
T 3kwd_A 119 SITHMALIHGP---------AYIGDGCFIGFRSTVFNARVGAGCVVMMHVLI 161 (213)
T ss_dssp EECTTCEEEEE---------EEECTTCEECTTCEEEEEEECTTCEECSSCEE
T ss_pred EECCCcEEcCC---------CEECCCCEECCCCEEeCcEECCCCEEcCCCEE
Confidence 99999999887 999999999999997 45556666666
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=121.73 Aligned_cols=209 Identities=15% Similarity=0.186 Sum_probs=134.3
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCCccE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPV 80 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~i 80 (410)
.+.+|||||| .|+||+. ..||.|++++|+|||+|+++.+.+ |+|++.... +.+.+++.. .+
T Consensus 7 ~~~aIIlAaG--~g~Rmg~---~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-------~v 74 (231)
T 3q80_A 7 EVVAIVPAAG--SGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH-------RA 74 (231)
T ss_dssp CEEEEEECCC--CCTTTCS---SSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG-------GC
T ss_pred ceEEEEECCC--CCccCCC---CCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC-------Ce
Confidence 4789999999 9999975 689999999999999999999874 666666544 444444432 34
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhccc-CCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEE
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMED-NPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~-~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~ 157 (410)
.++. ...+..++++.+++.+... ..+.++++.||.++ ...+..+++.+.+ +.++.+...+. .++-.| .
T Consensus 75 ~~v~--gg~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~p~--~dt~~~----~ 145 (231)
T 3q80_A 75 MIVA--GGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVLPL--SDTIKA----V 145 (231)
T ss_dssp EEEE--CCSSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEECC--SSCEEE----E
T ss_pred EEEc--CCCchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEEec--cCCEEE----E
Confidence 5544 2234578999999888531 13678999999986 3458899888765 24555665555 333222 3
Q ss_pred cCCCCcEEEEecCCCCccccce--eeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccch
Q 015259 158 DPDTNELLHYTEKPETFVSDLI--NCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (410)
Q Consensus 158 d~~~~~v~~i~ekp~~~~~~l~--~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (410)
+ +++.|..+.+. +.+. .+ -+.|+.+.+ +.+...... | ++ +.+ +|.
T Consensus 146 ~-~~g~v~~~~~r-----~~l~~~qT-Pq~F~~~~L~~a~~~~~~~---------------------n--~~-~~~-TD~ 193 (231)
T 3q80_A 146 D-ANGVVLGTPER-----AGLRAVQT-PQGFTTDLLLRSYQRGSLD---------------------L--PA-AEY-TDD 193 (231)
T ss_dssp C-TTSBEEECCCG-----GGEEEECS-CEEEEHHHHHHHHHHHTC-----------------------------CC-SSS
T ss_pred c-CCCcEEEecch-----hheEEEcC-CcEEEHHHHHHHHHHHHhh---------------------c--CC-CCC-CcH
Confidence 4 46677766443 2222 33 478888765 444322110 0 01 223 444
Q ss_pred hcccc-CCCceeEEeccceeeecCCccchhhhhHHH
Q 015259 235 LSPLA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 235 l~~l~-~~~~i~~~~~~g~~~~i~t~~~~~~an~~~ 269 (410)
...+. .+.++..++-+..++.|+||+|+..+...+
T Consensus 194 ~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 194 ASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp HHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 44333 245777777666789999999998887644
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-14 Score=125.69 Aligned_cols=201 Identities=13% Similarity=0.132 Sum_probs=115.8
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
++.||||||| .|+||++ . ||+|+|++|+|||+|+++. .. |+|++.. .+.+ ++ .. .+.++
T Consensus 25 ~~~aiILAgG--~s~Rm~~---~-~K~l~~i~gkpli~~~l~~-~~~~~~ivvv~~~---~~~~-~~----~~--~v~~~ 87 (236)
T 2px7_A 25 EVSVLIPAAG--NGLRLGR---G-PKAFLQVGGRTLLEWTLAA-FRDAAEVLVALPP---GAEP-PK----GL--GAVFL 87 (236)
T ss_dssp CCEEEEECCC------------C-CGGGCBCSSSBHHHHHHHH-TTTCSEEEEEECT---TCCC-CT----TC--SCEEE
T ss_pred ceEEEEEcCC--CCccCCC---C-CCeEEEECCEEHHHHHHHh-cCCCCeEEEEeCH---HHHH-hh----cC--CcEEE
Confidence 4569999999 9999985 4 9999999999999999999 44 6666653 1111 11 11 34555
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
.. ..|..++++.+++.+. .+.+++++||.++ + ..+..+++.+.+.+ ..+.+.+. .+... ..+ +
T Consensus 88 ~~--~~~~~~~i~~al~~~~---~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~~~--~~~~~----~~~--~ 152 (236)
T 2px7_A 88 EG--GATRQASVARLLEAAS---LPLVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVLPV--PDTLM----APE--G 152 (236)
T ss_dssp EC--CSSHHHHHHHHHHHCC---SSEEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEEEC--CSEEE----EEC--S
T ss_pred eC--CCchHHHHHHHHHHcC---CCeEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEEec--CCcEE----Eec--C
Confidence 42 3467889999888775 3679999999864 3 45888888876543 23333333 22211 113 4
Q ss_pred CcEEEEecCCCCccccceeeeEEEEcHHHHH-HhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 162 ~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
+++..+.+++. ..... ..++|+++.+. .+...... . ++ ..+. ..++..+
T Consensus 153 G~v~~~~~~~~---~~~~~-~~~~f~~~~l~~~~~~~~~~-------g-~~---------------~~d~-~~ll~~~-- 202 (236)
T 2px7_A 153 EAYGRVVPREA---FRLVQ-TPQGFFTALLREAHAYARRK-------G-LE---------------ASDD-AQLVQAL-- 202 (236)
T ss_dssp SSCEEEECGGG---CEEEC-SCEEEEHHHHHHHHHHHHHH-------T-CC---------------CSSH-HHHHHHT--
T ss_pred CeEEecCChHh---hcccc-CCeEEcHHHHHHHHHHHHhc-------C-CC---------------chhH-HHHHHHc--
Confidence 56666554311 11122 35677887653 33321100 0 00 0000 2222221
Q ss_pred CCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 241 KKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 241 ~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
+..+..+..++.|.+|+||+||..+...+.
T Consensus 203 ~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 232 (236)
T 2px7_A 203 GYPVALVEGEATAFKITHPQDLVLAEALAR 232 (236)
T ss_dssp TCCCEEEECCTTCCCCCSHHHHHHHHHHHT
T ss_pred CCcEEEEECCccccCCCCHHHHHHHHHHHH
Confidence 346777777778999999999998876553
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.8e-14 Score=128.59 Aligned_cols=92 Identities=21% Similarity=0.156 Sum_probs=67.3
Q ss_pred cEEccCeEECCCCEECCCcEE-----CCCcEECCCcEECCCCEEee-eEECCCCEECCCCEEEe---------eEECCCC
Q 015259 290 ATIIGDVYVHPSAKIHPTAKI-----GPNVSISANARIGAGVRLIS-CIILDGVEIMENAVVTN---------AIVGWKS 354 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i-----~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------~~i~~~~ 354 (410)
..+.+.+.|++++.|++++.| .+++.||++|.|+.++.|++ +.||++|.|+.++.|.+ ++|+++|
T Consensus 130 ~~I~p~a~I~~~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v 209 (304)
T 3eg4_A 130 FRAVPNCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNC 209 (304)
T ss_dssp CEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTC
T ss_pred cEEcCCEEECCCcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCC
Confidence 444444455444555544444 44666666666666666653 77777787877777766 8999999
Q ss_pred EECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc
Q 015259 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 355 ~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
.||.+|.|.++ ++||++|+||++++|.
T Consensus 210 ~IG~~a~I~~g---------v~IG~~avIgagsvV~ 236 (304)
T 3eg4_A 210 FIGARSEVVEG---------CIVREGSVLGMGVFIG 236 (304)
T ss_dssp EECTTCEECTT---------CEECTTCEECTTCEEC
T ss_pred EECCCCEEcCC---------cEECCCcEECCCCEEc
Confidence 99999999887 9999999999999884
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-13 Score=123.59 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=59.7
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEE--------------eeeEECCCCEECCCCEEE-------ee
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRL--------------ISCIILDGVEIMENAVVT-------NA 348 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i--------------~~~~i~~~~~i~~~~~i~-------~~ 348 (410)
+.+.+++.||+++.|++++.|.+++.||++|.|++++.| .+++||++|.|++++.|. .+
T Consensus 25 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~ 104 (259)
T 3hsq_A 25 SIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSPT 104 (259)
T ss_dssp CEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTBCE
T ss_pred CEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCCcE
Confidence 334444444555555555555555556666666666665 245566666666666665 45
Q ss_pred EECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccC
Q 015259 349 IVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSV 404 (410)
Q Consensus 349 ~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~ 404 (410)
+|++++.|+.++.|.+. +.||+++++++++.+ .++.|+++++|.+++
T Consensus 105 ~IG~~~~I~~~~~I~~~---------~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v 158 (259)
T 3hsq_A 105 VIGNKNYFMGNSHVGHD---------CILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFC 158 (259)
T ss_dssp EECSSCEECTTCEECTT---------CEECSSCEECTTCEECTTCEECSSCEECSSEEECTTC
T ss_pred EECCCcEEcCCcEECCC---------cEECCccEEcCCceECCccEECCCcEEeCCCEECCCC
Confidence 56666555555555544 566666666555555 355566666666555
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=129.99 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=20.6
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccC-CCc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSV-HQE 407 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~-~~~ 407 (410)
+.||++|+||.++.| .+++|++++.|..++ ++.
T Consensus 264 v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V~~~v~~~~ 304 (357)
T 4e79_A 264 TKIGKNCILAGACGVAGHLSIADNVTLTGMSMVTKNISEAG 304 (357)
T ss_dssp CEECTTCEECTTCEECSSCEECSSEEECTTCEECSCBCSCE
T ss_pred cEECCCCEECcCCEECCCeEECCCCEEeecCEEcCccCCCC
Confidence 667777777777766 345555556665566 443
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=126.86 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=79.4
Q ss_pred cEEccCeEECCCCEECCCcEE-----CCCcEECCCcEECCCCEEee-eEECCCCEECCCCEEE---------eeEECCCC
Q 015259 290 ATIIGDVYVHPSAKIHPTAKI-----GPNVSISANARIGAGVRLIS-CIILDGVEIMENAVVT---------NAIVGWKS 354 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i-----~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~i~~~~ 354 (410)
..+.+++.|++++.|++++.| ..++.||++|.|++++.|++ +.||++|.|+.++.|. +++|+++|
T Consensus 105 ~~I~p~a~I~~~~~Ig~g~~I~~~~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v 184 (276)
T 3gos_A 105 FRVVPPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNC 184 (276)
T ss_dssp CEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTC
T ss_pred cEECCCcEECCCCEECCCCEEcCCEEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCC
Confidence 344444444444444444444 45777888888877777774 8888888888888884 48999999
Q ss_pred EECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcc-e-------------EEcCCcEEc-ccCC
Q 015259 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-S-------------IVLPNKTLN-VSVH 405 (410)
Q Consensus 355 ~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~-~-------------~v~~~~~v~-~~~~ 405 (410)
+||.+|.|.++ +.||++|+||+|++|.. + .|+++++|. .++|
T Consensus 185 ~IG~~a~I~~g---------v~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svvv~G~~P 241 (276)
T 3gos_A 185 FVGARSEVVEG---------VIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLP 241 (276)
T ss_dssp EECTTCEECTT---------CEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEE
T ss_pred EECCCCEECCC---------CEECCCCEECCCCEECCCcEEccccccceeccccCCCcEEECCCcc
Confidence 99999999987 99999999999999943 2 678888883 4433
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-13 Score=123.99 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=70.2
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEE--------------EeeEECCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVV--------------TNAIVGWK 353 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i--------------~~~~i~~~ 353 (410)
.+.+.+.+.|++++.|+++|.|++++.||++|+|++++.|. ++.||++|.|+++++| .+++|+++
T Consensus 10 ~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~ 89 (266)
T 3r0s_A 10 SAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKN 89 (266)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTT
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCC
Confidence 56788888999999999999999999999999999999997 7999999999999999 58999999
Q ss_pred CEECCCcEEccC
Q 015259 354 SSIGRWSRVQAE 365 (410)
Q Consensus 354 ~~i~~~~~i~~~ 365 (410)
+.|++++.|..+
T Consensus 90 ~~Ig~~~~I~~~ 101 (266)
T 3r0s_A 90 ATIREFATINSG 101 (266)
T ss_dssp CEECTTCEEECC
T ss_pred CEECCceEecCC
Confidence 999999999864
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-13 Score=126.71 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=28.5
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
++||++|+||.++.| .+++|+++++|..++|+..+
T Consensus 169 v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V~~dvp~~~~ 210 (305)
T 3t57_A 169 VVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQDVPKYMM 210 (305)
T ss_dssp CEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEE
T ss_pred CEECCceEEcCCCEEcCCeEECCCCEEcCCCeEcccCCCCeE
Confidence 778888888887776 57888899999999998765
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-13 Score=116.19 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=70.2
Q ss_pred CcEEccCeEEC--CCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEe-eEECCCCEECCCcEEcc
Q 015259 289 NATIIGDVYVH--PSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTN-AIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 289 ~~~i~~~~~i~--~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~ 364 (410)
++.+.+.+.|+ +++.|++++.|++++.||++|.|++++.|. ++.||++|.|+.++.|.+ ++|+++|+|+.++.|.+
T Consensus 81 ~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~ 160 (194)
T 3bfp_A 81 SALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLP 160 (194)
T ss_dssp TCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred eEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECC
Confidence 35555566666 666666666666666677777777777765 677777777777777773 77777777777777776
Q ss_pred CCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 365 EGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 365 ~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+ +.||++++|++++++.+. +.+++++..
T Consensus 161 ~---------~~Ig~~~~Igagsvv~~~-v~~~~~~~G 188 (194)
T 3bfp_A 161 N---------LSLADDSILGGGATLVKN-QDEKGVFVG 188 (194)
T ss_dssp T---------CEECTTCEECTTCEECSC-BCSCCEECC
T ss_pred C---------CEECCCCEECCCCEEccc-cCCCCEEEe
Confidence 6 777777777777777443 345555543
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-13 Score=123.43 Aligned_cols=77 Identities=23% Similarity=0.214 Sum_probs=57.4
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEee---------------eEECCCCEECCCCEEE-eeEECC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS---------------CIILDGVEIMENAVVT-NAIVGW 352 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---------------~~i~~~~~i~~~~~i~-~~~i~~ 352 (410)
++.+.+++.|++++.|+++|.|++++.||++|.|+++|.|++ ++||++|.|+++++|. +++|++
T Consensus 14 ~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~Ig~ 93 (273)
T 3fs8_A 14 GVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTIIGD 93 (273)
T ss_dssp TCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCEECT
T ss_pred CcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCEECC
Confidence 556666777777777777777777777888888888888764 7788888888888885 677777
Q ss_pred CCEECCCcEEccC
Q 015259 353 KSSIGRWSRVQAE 365 (410)
Q Consensus 353 ~~~i~~~~~i~~~ 365 (410)
++.|+.++.|..+
T Consensus 94 ~~~Ig~~~~I~~~ 106 (273)
T 3fs8_A 94 NFQTGHKVTIREN 106 (273)
T ss_dssp TCEECSSCEECSS
T ss_pred CCEECCceEECCC
Confidence 7777766666544
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-13 Score=123.99 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=78.3
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 366 (410)
++.+.+++.|+.++.|++++.|.+++.||++|.|+.++.|. +++||++|.|++++.|. +++|++++.+++++.+.+..
T Consensus 82 ~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~~~~ 161 (273)
T 3fs8_A 82 ENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDP 161 (273)
T ss_dssp TCEEESSCEECTTCEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEECCCS
T ss_pred CCEEeCCCEECCCCEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEecCCC
Confidence 34444455555555555555555566666666666666664 56666777777666666 56666666666666665532
Q ss_pred CCC-cceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 367 DFN-AKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 367 ~~~-~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
..+ ...+.++||++|+||.+++| .+|+|++|++|..++|+..+
T Consensus 162 ~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~IgagsvV~~dvp~~~~ 212 (273)
T 3fs8_A 162 TPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKDVPKETV 212 (273)
T ss_dssp SSSCSCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred CCcccccCCcEECCCeEEcCCCEEcCCCEECCCCEECCCCEECccCCCCcE
Confidence 221 11223788888888877777 68889999999999998764
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-13 Score=122.65 Aligned_cols=78 Identities=24% Similarity=0.243 Sum_probs=68.9
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEE-------------EeeEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVV-------------TNAIVGWK 353 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~~~i~~~ 353 (410)
.++.+.+.+.|++++.|+++|.|++++.||++|.|++++.|. ++.||++|.|++++.| .+++|+++
T Consensus 12 p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~ 91 (265)
T 4e6u_A 12 STAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNN 91 (265)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSS
T ss_pred CCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCC
Confidence 367788888888888888888888899999999999999997 6999999999999999 47899999
Q ss_pred CEECCCcEEccC
Q 015259 354 SSIGRWSRVQAE 365 (410)
Q Consensus 354 ~~i~~~~~i~~~ 365 (410)
+.|++++.|..+
T Consensus 92 ~~Ig~~~~I~~g 103 (265)
T 4e6u_A 92 NLIREHCSLHRG 103 (265)
T ss_dssp CEECTTCEEECC
T ss_pred eEECCceEECcc
Confidence 999999999854
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-13 Score=127.04 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=26.1
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCC-Ccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVH-QEI 408 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~-~~~ 408 (410)
+.||++|+||.++.| .+++|+++++|..+++ +..
T Consensus 259 v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V~~~v~~~~~ 300 (341)
T 3eh0_A 259 LKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGV 300 (341)
T ss_dssp EEECTTCEECTTCEECSSEEECSSEEECTTCEECSCBCSCEE
T ss_pred cEECCCcEEcCCCEECCCCEECCCCEEeeCCEECCCcCCCCe
Confidence 788888888888888 4677777777777877 443
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-13 Score=120.04 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=76.3
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 366 (410)
.+.+.+.+.+++++.|++++.|++++.||++|.|++++.|. +++||++|.|++++.|. +++|+++|+||.++.|.++
T Consensus 105 ~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~- 183 (220)
T 4ea9_A 105 SAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPG- 183 (220)
T ss_dssp TCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTT-
T ss_pred CCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC-
Confidence 45566677777777777777777777777777777777776 57788888888888777 4788888888888888776
Q ss_pred CCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 367 DFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+.||+++.|++++++.+. +.+++++.
T Consensus 184 --------~~Ig~~~~igagsvv~~~-v~~~~~~~ 209 (220)
T 4ea9_A 184 --------VTIGADTIVGAGGVVVRD-LPDSVLAI 209 (220)
T ss_dssp --------CEECTTCEECTTCEECSC-BCTTCEEE
T ss_pred --------cEECCCCEECCCCEEccc-cCCCcEEE
Confidence 788888888888877544 35555543
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-13 Score=115.94 Aligned_cols=105 Identities=28% Similarity=0.253 Sum_probs=59.8
Q ss_pred cEEccCeEECCCCEEC--CCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccC
Q 015259 290 ATIIGDVYVHPSAKIH--PTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (410)
..+++++++++++.|+ +++.|.++++|+++++||++|.|. +++|+++|.||++|.|. +++|..+++||++
T Consensus 76 ~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~------ 149 (194)
T 3bfp_A 76 NLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKN------ 149 (194)
T ss_dssp CEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT------
T ss_pred cccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCC------
Confidence 4456666666666666 666666666666666666666553 44444444444444333 2333333333333
Q ss_pred CCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 366 GDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 366 ~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||.++.|..+++| ++++|++|++|.+++++..+
T Consensus 150 ---------~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~~v~~~~~ 185 (194)
T 3bfp_A 150 ---------CFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGV 185 (194)
T ss_dssp ---------CEECTTCEECTTCEECTTCEECTTCEECSCBCSCCE
T ss_pred ---------CEEcCCCEECCCCEECCCCEECCCCEEccccCCCCE
Confidence 334444444444445 57788899999999987654
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-13 Score=127.94 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=37.7
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEc
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (410)
++.+.+.+.|++++.|+++++|++++.||++|+|+++|.|+ ++.||++|.|++++.|. +++|+++|.|++++.|+
T Consensus 108 ~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~Ig 184 (357)
T 4e79_A 108 TARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVIG 184 (357)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEES
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeEEC
Confidence 34444444444444444444444445555555555555554 45555555555555553 45555555555555554
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=125.90 Aligned_cols=108 Identities=11% Similarity=0.084 Sum_probs=77.1
Q ss_pred CcEEccCeEECCCCEECCCcEECC-----CcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEe---------eEECCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGP-----NVSISANARIGAGVRLI-SCIILDGVEIMENAVVTN---------AIVGWK 353 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~ 353 (410)
+..+.++++|++++.|+++|.|.+ ++.||++|.|+.++.|+ ++.||++|.|+.++.|.+ ++|+++
T Consensus 145 ~~~I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~ 224 (316)
T 3tk8_A 145 GFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDN 224 (316)
T ss_dssp CCEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTT
T ss_pred CcEEeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCC
Confidence 455666666666666666665553 55566666666666664 466777777777777765 789999
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcc-e-------------EEcCCcEEc-ccCC
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-S-------------IVLPNKTLN-VSVH 405 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~-~-------------~v~~~~~v~-~~~~ 405 (410)
|.||.+|.|.++ +.||++|+||+|++|.. + .|+++++|. .++|
T Consensus 225 v~IG~~a~I~~g---------v~IG~g~vIgagsvV~~~t~I~d~~~~~v~~g~Vp~gsvVvaGsvP 282 (316)
T 3tk8_A 225 CFIGARSEVVEG---------VIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVVVAGNLP 282 (316)
T ss_dssp CEECTTCEECTT---------CEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEEEEEEEE
T ss_pred CEECCCCEEcCC---------CEECCCCEEcCCCEEcCCeeecccccccccccEeCCCCEEECCCCc
Confidence 999999999887 89999999999999943 2 678888883 4334
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.8e-13 Score=126.60 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=25.8
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccC-CCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSV-HQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~-~~~~~ 409 (410)
+.||++|+||.++.| .+++|++++.|..++ ++..+
T Consensus 281 v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~V~k~v~~~~~~ 323 (372)
T 3pmo_A 281 AKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMVTRSITEPGSY 323 (372)
T ss_dssp CEECSSCEECTTCEECSSCEECSSEEECTTCEECSCBCSCEEE
T ss_pred CEECCCeEEeCCCEECCCCEECCCCEEeeCCEEccCcCCCCcE
Confidence 777888888887777 467777888888887 65543
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.5e-13 Score=118.89 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=61.4
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCC
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
.+++.+++++++.|++++.|.++++|+++++||++|.|. +++|+++|.||++| .|++++.|+.++.|+.+
T Consensus 101 ~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~-----~i~~~~~i~~~v~Ig~~---- 171 (220)
T 4ea9_A 101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAAC-----HLGPASALAGGVSVGER---- 171 (220)
T ss_dssp EECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC-----EECTTCEECSSCEECTT----
T ss_pred cCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCC-----EECCCCEEcCCCEECCC----
Confidence 455566666666666666666666666666666665554 44444444444444 33333333334444443
Q ss_pred cceeeeEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 370 AKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||.++.|.++++| .+++|++|++|..++++..+
T Consensus 172 -----~~Ig~~~~i~~~~~Ig~~~~igagsvv~~~v~~~~~ 207 (220)
T 4ea9_A 172 -----AFLGVGARVIPGVTIGADTIVGAGGVVVRDLPDSVL 207 (220)
T ss_dssp -----CEECTTCEECTTCEECTTCEECTTCEECSCBCTTCE
T ss_pred -----CEECCCCEEcCCcEECCCCEECCCCEEccccCCCcE
Confidence 455555555555555 57888999999999998754
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-13 Score=121.49 Aligned_cols=97 Identities=21% Similarity=0.317 Sum_probs=80.2
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEee-----eEECCCCEECCCCEEE-----------------------
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-----CIILDGVEIMENAVVT----------------------- 346 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~----------------------- 346 (410)
...|++++.|+++|.|.+++.||++|.|+++|.|.. ++||++|.|+++|.|.
T Consensus 59 ~~~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~ 138 (247)
T 1qre_A 59 APVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKE 138 (247)
T ss_dssp CCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEE
T ss_pred CcEECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCcc
Confidence 345677777777777777888888888888888864 3899999999999997
Q ss_pred -eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE------cceEEcCCcEE
Q 015259 347 -NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV------TNSIVLPNKTL 400 (410)
Q Consensus 347 -~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v------~~~~v~~~~~v 400 (410)
+++|+++|.|+++|.|.+. ++||++|+||++++| .+++|++|++|
T Consensus 139 ~~v~IG~~v~Ig~~~~I~~~---------~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 139 YAVYIGNNVSLAHQSQVHGP---------AAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAA 190 (247)
T ss_dssp ESEEECTTCEECTTCEEEEE---------EEECTTCEECTTCEEEEEEECTTCEECTTCEE
T ss_pred CceEECCCCEECCCCEEcCC---------cEECCCCEECCCCEEeceEECCCCEECCCCEE
Confidence 2899999999999999886 899999999999987 45666666666
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-12 Score=119.77 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=76.2
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-------------eeEECCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-------------NAIVGWKS 354 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~~~~ 354 (410)
.+.+.+++.|++++.|+++|.|++++.||++|.|++++.|. ++.||++|.|+++++|. +++|++++
T Consensus 11 ~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~ 90 (262)
T 2qia_A 11 TAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRN 90 (262)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSC
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCc
Confidence 55666777777788888888888888888899999999887 79999999999999996 68999999
Q ss_pred EECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 355 ~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.|++++.|..+.... .+.++||++++|++++.+
T Consensus 91 ~Ig~~~~I~~~~~~~--~~~~~IG~~~~Ig~~~~I 123 (262)
T 2qia_A 91 RIRESVTIHRGTVQG--GGLTKVGSDNLLMINAHI 123 (262)
T ss_dssp EECTTCEEECCCTTT--TSEEEECSSCEECTTCEE
T ss_pred eeCCCCEEcCCccCC--CCcCEECCCcEEeeeeEE
Confidence 999999998642110 012556666655555555
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-14 Score=124.36 Aligned_cols=124 Identities=19% Similarity=0.245 Sum_probs=84.8
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|+||||||| .|+||++ .||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.+++... ..+...+.++
T Consensus 1 m~aiIlA~G--~s~R~~~----~~K~l~~~~g~pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~ 73 (196)
T 3rsb_A 1 MDALIMAGG--KGTRMGG----VEKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSA-YKDYKNIVVI 73 (196)
T ss_dssp CEEEEEC------CGGGG----SCGGGCEETTEEHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHH-TTTTTEEEE-
T ss_pred CEEEEECCC--CCCcCCC----CCccEEEECCEEHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhh-ccCCCCEEEE
Confidence 689999999 9999997 79999999999999999999876 7888777677778887652 1122245544
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHh-----cCCceEEEEEec
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRN-----YGGMGTILVIKV 144 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~-----~~~~~~l~~~~~ 144 (410)
. ....|++++++.+.+.+ .+.++++.||.++ ...+..+++.+.+ .+.+..+.+.+.
T Consensus 74 ~-~~~~g~~~si~~al~~~----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~ 136 (196)
T 3rsb_A 74 D-TSGKGYIEDLNECIGYF----SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPK 136 (196)
T ss_dssp --------CCCCCTTTTTC----SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEET
T ss_pred E-CCCCCcHHHHHHHHHhC----CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEc
Confidence 3 44667777888777766 3789999999974 4569999999876 445555554443
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.7e-13 Score=125.08 Aligned_cols=75 Identities=23% Similarity=0.216 Sum_probs=40.6
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEc
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (410)
++.+.+++.|++++.|+++++|++++.||++|+|++++.|+ ++.||++|.|+.++.|. +++|+++|.|++++.|.
T Consensus 103 ~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I~ 179 (341)
T 3eh0_A 103 SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVG 179 (341)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCEEE
T ss_pred CcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcEEC
Confidence 44455555555555555555555555555555555555552 45555555555555553 45555555555555553
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-13 Score=129.84 Aligned_cols=93 Identities=23% Similarity=0.284 Sum_probs=83.8
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 366 (410)
.++.+.+++.|++++.|++++.|.+++.||++|.|++++.|. +++||++|.|+++|.|.+++|++++.|++++.|.+
T Consensus 237 ~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-- 314 (401)
T 2ggo_A 237 DNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGD-- 314 (401)
T ss_dssp SSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEES--
T ss_pred CCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcc--
Confidence 457788889999999999999999999999999999999997 79999999999999999999999999999998876
Q ss_pred CCCcceeeeEECCCCEECCCcEEc
Q 015259 367 DFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
++||++++||+++.+.
T Consensus 315 --------~~Ig~~~~Ig~~~~i~ 330 (401)
T 2ggo_A 315 --------SVIAEDVNFGAGTLIA 330 (401)
T ss_dssp --------CEECTTCEECTTCEEC
T ss_pred --------eEECCCcEECCCcEEc
Confidence 7888888888777764
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=114.16 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=81.1
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc--EEEecccchHHHHHHHHhhcccCCccEEEeeCC
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR--IYLVGFYEEREFALYVSSISNELRIPVRYLRED 86 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~--i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~ 86 (410)
|.+|||||| .|+||+. ||+|++++|+|||+|+++.+.. ++|++.+ .+.+..+. ..++.++.. ...
T Consensus 1 m~aiILAgG--~s~Rmg~-----~K~ll~~~G~pli~~~~~~l~~~~vvvv~~~-~~~~~~~~----~~~~~~~v~-d~~ 67 (208)
T 3ngw_A 1 MKVAVLVGG--VGRRIGM-----EKTEVMLCGKKLIEWVLEKYSPFQTVFVCRD-EKQAEKLS----SRYEAEFIW-DLH 67 (208)
T ss_dssp CEEEEECCC--CCTTTTS-----CGGGCEETTEEHHHHHHHHHTTSEEEEECSS-HHHHHHHH----TTSCSCEEC-CTT
T ss_pred CEEEEECCC--chhhCCC-----CCcccEECCeeHHHHHHHHhcCCCEEEEECC-HHHHHHHH----HhcCCeEEe-cCC
Confidence 689999999 9999974 9999999999999999999987 7777754 33444332 223433322 233
Q ss_pred CCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHHhcCCceE
Q 015259 87 KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHRNYGGMGT 138 (410)
Q Consensus 87 ~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~~~~~~~~ 138 (410)
...|..++++.+.+.+. +.+ ++.||.++ + ..+..+++.+.+.+.+++
T Consensus 68 ~~~G~~~si~~gl~~~~----~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v 116 (208)
T 3ngw_A 68 KGVGSIAGIHAALRHFG----SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDAL 116 (208)
T ss_dssp CCCSHHHHHHHHHHHHS----SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred CCCChHHHHHHHHHHcC----CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEE
Confidence 45688899999988772 678 99999985 3 347888877654444433
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-13 Score=131.48 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=80.8
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceee
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGI 374 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~ 374 (410)
...+++++.|++++.+.+++.||++|.|+++|.|.+++||++|.|+++|+|.+++||++|.|++++.|.+
T Consensus 273 ~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~g---------- 342 (496)
T 3c8v_A 273 GAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIIN---------- 342 (496)
T ss_dssp ---CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEES----------
T ss_pred CcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcC----------
Confidence 4567788888888888889999999999999999999999999999999999999999999999999987
Q ss_pred eEECCCCEECCCcEEc-c----eEEcCCcEE
Q 015259 375 TILGEAVGVEDEVVVT-N----SIVLPNKTL 400 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v~-~----~~v~~~~~v 400 (410)
++||++|+||++++|. + ++|+.+++|
T Consensus 343 v~IGd~v~IG~~a~I~~~~~~~v~IG~~a~I 373 (496)
T 3c8v_A 343 AHLGDMIFTGFNSFLQGSESSPLKIGDGCVV 373 (496)
T ss_dssp EEEEETCEECTTCEEECCSSSCEEECTTCEE
T ss_pred ceECCCcEECCCCEEeCCCCcceEECCCCEE
Confidence 8888888888888873 3 354444444
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=123.42 Aligned_cols=17 Identities=18% Similarity=0.312 Sum_probs=10.2
Q ss_pred eeEECCCCEECCCcEEc
Q 015259 347 NAIVGWKSSIGRWSRVQ 363 (410)
Q Consensus 347 ~~~i~~~~~i~~~~~i~ 363 (410)
+++|+++|.||+++.|.
T Consensus 222 ~v~IGd~v~IGa~~~I~ 238 (372)
T 3pmo_A 222 GVTIGDDVEIGANTTID 238 (372)
T ss_dssp CEEECSSCEECTTCEEE
T ss_pred CeEECCCCEECCCcEEc
Confidence 45666666666666554
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.5e-13 Score=116.65 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=58.7
Q ss_pred CeEECCCCEECCC-cEECCC---cEECCCcEECCCCEEee----eEECCCCEECCCCEE----EeeEECCCCEECCCcEE
Q 015259 295 DVYVHPSAKIHPT-AKIGPN---VSISANARIGAGVRLIS----CIILDGVEIMENAVV----TNAIVGWKSSIGRWSRV 362 (410)
Q Consensus 295 ~~~i~~~~~i~~~-~~i~~~---~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i----~~~~i~~~~~i~~~~~i 362 (410)
.++|++++.|.+. +.|.++ +.||++|.|++++.+.. +.||++|.|++.+.+ .+++|+++|.|++++.|
T Consensus 36 ~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I 115 (215)
T 2wlg_A 36 SVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEI 115 (215)
T ss_dssp EEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEE
T ss_pred EEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEE
Confidence 3555555555554 344432 55666666666655542 556666666653333 34566666666666666
Q ss_pred ccCCCCCc----------ceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCc
Q 015259 363 QAEGDFNA----------KLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQE 407 (410)
Q Consensus 363 ~~~~~~~~----------~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~ 407 (410)
.....|+. ..+.++||++|+||++++| .+|+|+++++|.+++|+.
T Consensus 116 ~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~vp~~ 177 (215)
T 2wlg_A 116 RNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEP 177 (215)
T ss_dssp ESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECSCCCCC
T ss_pred ECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcCccCCC
Confidence 54322111 1122455555555555554 355555555555555544
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=119.82 Aligned_cols=74 Identities=18% Similarity=0.325 Sum_probs=40.9
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-----eeEECCCCEECCCcEE
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-----NAIVGWKSSIGRWSRV 362 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i 362 (410)
++.+.+.+.|++++.|+++|.|++++.||++|+|++++.|. ++.||++|.|+++++|. +++|++++.|++++.|
T Consensus 13 ~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~I 92 (305)
T 3t57_A 13 SAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVV 92 (305)
T ss_dssp TSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEE
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEe
Confidence 34455555555555555555555555555555555555554 55555555555555554 3555555555555555
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-13 Score=120.79 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=73.0
Q ss_pred cCeEECCCCEECCCcEEC--CCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEEe--------------------
Q 015259 294 GDVYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLI----SCIILDGVEIMENAVVTN-------------------- 347 (410)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-------------------- 347 (410)
.++.||+++.|.+++.|. .++.||++|.|++++.|. +++||++|.|+++|.|.+
T Consensus 84 ~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~ 163 (252)
T 3jqy_B 84 NYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKD 163 (252)
T ss_dssp CEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCC
T ss_pred CeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCC
Confidence 345677777777777774 367888888888888887 788888888888888875
Q ss_pred eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEE
Q 015259 348 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 400 (410)
Q Consensus 348 ~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v 400 (410)
++|+++|+||++|.|.++ +.||++|+||++++|.+. |.+++++
T Consensus 164 v~Igd~v~IG~~a~I~~g---------v~IG~~~~IgagsvV~~~-vp~~~~~ 206 (252)
T 3jqy_B 164 IIISSYVWVGRNVSIMKG---------VSVGSGSVIGYGSIVTKD-VPSMCAA 206 (252)
T ss_dssp EEECSSCEECSSEEECTT---------CEECTTCEECTTCEECSC-BCTTEEE
T ss_pred eEEecCcEECCCCEECCC---------CEECCCCEECCCCEECcc-cCCCCEE
Confidence 478888888888888777 788888888888888543 3444444
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=120.59 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=41.2
Q ss_pred CCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCCcceeeeEEC
Q 015259 301 SAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILG 378 (410)
Q Consensus 301 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~ 378 (410)
++.|.+++.|++++.||++|.|+++ .|. ++.||++|.|..++.|. ++.||++|.|+.++.|.+. .++...+.++||
T Consensus 145 ~~~I~p~a~I~~~~~IG~g~~I~~~-~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~-~~~~~~~~v~IG 222 (316)
T 3tk8_A 145 GFRVVPPAIARRGSFIAKNVVLMPS-YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV-LEPLQANPVIIE 222 (316)
T ss_dssp CCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCC-CSSTTSCCCEEC
T ss_pred CcEEeCCeEEeCCcEEcCCCEECCC-EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCC-cccccCCCcEEC
Confidence 3333333333334444444444333 121 33334444444444443 3444444444444444331 111112224455
Q ss_pred CCCEECCCcEE-------cceEEcCCcEEcc
Q 015259 379 EAVGVEDEVVV-------TNSIVLPNKTLNV 402 (410)
Q Consensus 379 ~~~~i~~~~~v-------~~~~v~~~~~v~~ 402 (410)
++|+||++++| .+|+|++|++|..
T Consensus 223 d~v~IG~~a~I~~gv~IG~g~vIgagsvV~~ 253 (316)
T 3tk8_A 223 DNCFIGARSEVVEGVIVEENSVISMGVYLGQ 253 (316)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CCCEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence 55555444444 3455555555555
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.2e-13 Score=120.41 Aligned_cols=116 Identities=17% Similarity=0.124 Sum_probs=92.7
Q ss_pred cCeEECCCCEECCCcEE----CCCcEECCCcEECCCCEEe---eeEECCCCEECCCCEEE----eeEECCCCEECCCcEE
Q 015259 294 GDVYVHPSAKIHPTAKI----GPNVSISANARIGAGVRLI---SCIILDGVEIMENAVVT----NAIVGWKSSIGRWSRV 362 (410)
Q Consensus 294 ~~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~----~~~i~~~~~i~~~~~i 362 (410)
..+.|++++.+...+.+ ...+.||++|.|++++.|. +++||++|.|++++.|. +++||++|.||+++.|
T Consensus 62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I 141 (252)
T 3jqy_B 62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVIL 141 (252)
T ss_dssp CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEE
T ss_pred CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEE
Confidence 35677777777766666 3567889999998888884 78999999999999999 8999999999999999
Q ss_pred ccCCCCC----------cceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 363 QAEGDFN----------AKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 363 ~~~~~~~----------~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
.....++ ...+.++||++|+||++++| .+|+|++|++|..++|+..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~vp~~~~ 205 (252)
T 3jqy_B 142 RASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMCA 205 (252)
T ss_dssp ECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred ecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEECcccCCCCE
Confidence 8753322 22344688888888888877 68888999999999988654
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-12 Score=124.24 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=73.8
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 366 (410)
.+.+.+.+.|++++.|++++.|++++.||++|+|++++.|+ +++||++|.|+.+++|. +++|+++|.|++++.|....
T Consensus 130 ~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~ 209 (374)
T 2iu8_A 130 TAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCG 209 (374)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEEEEC
T ss_pred CCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEECcCC
Confidence 55666667777777777777777777777777777777774 67788888888888885 78888888888888886531
Q ss_pred C-----------CCcceeeeEECCCCEECCCcEE
Q 015259 367 D-----------FNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 367 ~-----------~~~~~~~~~i~~~~~i~~~~~v 389 (410)
. .....|.++||++|+||++++|
T Consensus 210 ~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I 243 (374)
T 2iu8_A 210 FGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTI 243 (374)
T ss_dssp SCEEEETTTEEEECCCCCCEEECTTCEECTTCEE
T ss_pred cccccccCCceeEeeeeccEEECCCCEECCCcEE
Confidence 1 1112345889999999988887
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=118.94 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=33.6
Q ss_pred eeEECCCCEECCCCEEEe-eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEc
Q 015259 330 SCIILDGVEIMENAVVTN-AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLN 401 (410)
Q Consensus 330 ~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~ 401 (410)
++.||++|.|++++.|.+ ++|+++|.|+.++.|.+.. ++.....++||++|+||++++| .+|+|++|++|.
T Consensus 133 ~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~-~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~ 211 (276)
T 3gos_A 133 GAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL-EPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIG 211 (276)
T ss_dssp TCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCC-SSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEECCCCEECCcc-ccCCCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence 344455555555555542 5555555555555553310 1111111455555555555444 345555555555
Q ss_pred c
Q 015259 402 V 402 (410)
Q Consensus 402 ~ 402 (410)
+
T Consensus 212 ~ 212 (276)
T 3gos_A 212 Q 212 (276)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-12 Score=118.10 Aligned_cols=34 Identities=26% Similarity=0.135 Sum_probs=14.2
Q ss_pred eEECCCCEECCCCEEE-eeEECCCCEECCCcEEcc
Q 015259 331 CIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 331 ~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 364 (410)
++||++|.||.+|.|. +++|+++|+||+++.|.+
T Consensus 203 v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~ 237 (304)
T 3eg4_A 203 TIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGK 237 (304)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred eEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcC
Confidence 4444444444444333 334444444444433333
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-12 Score=125.28 Aligned_cols=178 Identities=14% Similarity=0.119 Sum_probs=124.5
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccC-CccchhhhHhhccc-----------EEEecccchHHHHHHHH-hhcc
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR-----------IYLVGFYEEREFALYVS-SISN 74 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~-g~pli~~~l~~l~~-----------i~vv~~~~~~~i~~~~~-~~~~ 74 (410)
++.+|||||| .||||+ ...||+|+|++ |+|+++++++.+.. ++....+..+.+.++++ +. +
T Consensus 75 k~avViLAGG--lGTRLg---~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~-~ 148 (505)
T 2oeg_A 75 STVVLKLNGG--LGTGMG---LCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARY-P 148 (505)
T ss_dssp TEEEEEEECC--CCGGGT---CCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHC-H
T ss_pred cceEEEEcCC--cccccC---CCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhh-h
Confidence 6899999999 999999 48999999999 99999999999875 34445555778889987 53 3
Q ss_pred cCCc---cEE-E---------------e-------eCCCCCCcHHHHHHh-----HHHhcccCCCcEEEEcCCcccC-CC
Q 015259 75 ELRI---PVR-Y---------------L-------REDKPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDVCCS-FP 122 (410)
Q Consensus 75 ~~~~---~i~-~---------------i-------~~~~~~g~~~~l~~~-----~~~l~~~~~~~~lvl~~D~i~~-~~ 122 (410)
.|++ +|. | + .+..+.|+++.+... ++.+.+...++++|.++|.+.. .|
T Consensus 149 ~fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D 228 (505)
T 2oeg_A 149 WLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATID 228 (505)
T ss_dssp HHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCC
T ss_pred ccCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccC
Confidence 3444 233 2 1 112355999988644 3333223357899999999874 56
Q ss_pred hHHHHHHHHhcCCceEEEEEecCcccc-cccceEEEcC-----CCCc---------EEEEecCCCC--------ccccce
Q 015259 123 LPEMLDAHRNYGGMGTILVIKVSAESA-SQFGELVADP-----DTNE---------LLHYTEKPET--------FVSDLI 179 (410)
Q Consensus 123 l~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~d~-----~~~~---------v~~i~ekp~~--------~~~~l~ 179 (410)
+ .++.+|.++++++++.+.+. ..+ ..+|++..+. .+++ ++.+.+-|.+ ....+.
T Consensus 229 ~-~llg~~~~~~ad~~~~v~~k--~~~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~~ 305 (505)
T 2oeg_A 229 K-RVLAYMEKEKIDFLMEVCRR--TESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESFQDINKYSFF 305 (505)
T ss_dssp H-HHHHHHHHHTCSEEEEEEEC--CTTCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCEE
T ss_pred H-HHHHHHHhcCCcEEEEEEEe--cCCccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcccCccccCee
Confidence 6 89999999999999988876 443 4578776621 2345 4444444432 223446
Q ss_pred eeeEEEEcHHHHHHh
Q 015259 180 NCGVYVFTPDIFNAI 194 (410)
Q Consensus 180 ~~Giy~~~~~~~~~l 194 (410)
++...+|+-+.+..+
T Consensus 306 Ninn~~~~l~~l~~~ 320 (505)
T 2oeg_A 306 NTNNLWIRLPVLLET 320 (505)
T ss_dssp EEEEEEEEHHHHHHH
T ss_pred EEEEEEEEHHHHHHH
Confidence 888889998776544
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.6e-13 Score=120.30 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=74.0
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-----eeEECCCCEECCCCEEEe---------eEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-----SCIILDGVEIMENAVVTN---------AIVGWK 353 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------~~i~~~ 353 (410)
.+..|++.++|++++.|++++.|.++++|+.++.||++|.|. +++||++|.|+.+|.|.. ++||++
T Consensus 183 ~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdn 262 (347)
T 3r5d_A 183 AGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEG 262 (347)
T ss_dssp TTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------CCCCEECTT
T ss_pred CCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEECCC
Confidence 466777777777777777777777666766677777666664 378889999988888864 789999
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEc
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVL 395 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~ 395 (410)
|.||.++.| + +.||++|+||+|++| +++.|.
T Consensus 263 v~IGAnAtI-G----------VtIGd~~iIGAGSVVtkdt~I~ 294 (347)
T 3r5d_A 263 CLIGANAGI-G----------IPLGDRNIVEAGLYITAGTKVA 294 (347)
T ss_dssp CEECTTCEE-C----------SCBCTTCEECTTCEECTTCEEE
T ss_pred CEECCCCEE-e----------eEECCCCEECCCCEECCCCEEE
Confidence 999999988 4 789999999998888 455553
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-13 Score=122.29 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=69.7
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeE
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITI 376 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~ 376 (410)
+++++.|++.+.|.+++.||++++|++++.|. ++.|+++|.|..++.+. ++||++|.|++++.|.+..... ..+.++
T Consensus 181 I~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~~~~-~~~~V~ 258 (347)
T 3r5d_A 181 VPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAG-VFVGKGSDLGGGCSTMGTLSGG-GNIVIS 258 (347)
T ss_dssp CCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTT-CEECTTEEECTTCEECC-------CCCCE
T ss_pred ccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEe-EEECCCCEECCCCEEccccCCC-CccceE
Confidence 34444444444444455555555555555554 45557777777665554 8999999999999997632211 122389
Q ss_pred ECCCCEECCCcEE-----cceEEcCCcEEcccCC
Q 015259 377 LGEAVGVEDEVVV-----TNSIVLPNKTLNVSVH 405 (410)
Q Consensus 377 i~~~~~i~~~~~v-----~~~~v~~~~~v~~~~~ 405 (410)
||++|+||+|++| .+|+|++|++|.++++
T Consensus 259 IGdnv~IGAnAtIGVtIGd~~iIGAGSVVtkdt~ 292 (347)
T 3r5d_A 259 VGEGCLIGANAGIGIPLGDRNIVEAGLYITAGTK 292 (347)
T ss_dssp ECTTCEECTTCEECSCBCTTCEECTTCEECTTCE
T ss_pred ECCCCEECCCCEEeeEECCCCEECCCCEECCCCE
Confidence 9999999999988 6888888888887764
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=120.44 Aligned_cols=92 Identities=21% Similarity=0.165 Sum_probs=59.8
Q ss_pred CcEEccCeEECCCCEE--CCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccC
Q 015259 289 NATIIGDVYVHPSAKI--HPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i--~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
+..|++++.||+++.| +.+++|++++.||++|+|+++++|+ ++.+++++.++.++. .+++||++|+||.+|.|.++
T Consensus 163 gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~-~~~~IGd~v~IGaga~Ilgg 241 (313)
T 3q1x_A 163 SIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTK-RHPTVGDYVTIGTGAKVLGN 241 (313)
T ss_dssp CCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSS-CSCEECSSCEECTTCEEESS
T ss_pred CeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCc-cCCEECCCCEECCCCEECCC
Confidence 3455555555555555 3344555555555555555555543 233444444443331 35699999999999999988
Q ss_pred CCCCcceeeeEECCCCEECCCcEEc
Q 015259 366 GDFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 366 ~~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
++||++|+||+|++|.
T Consensus 242 ---------v~IG~~a~IGagsvV~ 257 (313)
T 3q1x_A 242 ---------IIVGSHVRIGANCWID 257 (313)
T ss_dssp ---------CEECSSEEECTTCEEC
T ss_pred ---------cEECCCCEECCCCEEC
Confidence 9999999999999994
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-12 Score=112.81 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=83.4
Q ss_pred eEECCCCEECCCcEECC---CcEECCCcEECCCCEE----eeeEECCCCEECCCCEEEe--------------------e
Q 015259 296 VYVHPSAKIHPTAKIGP---NVSISANARIGAGVRL----ISCIILDGVEIMENAVVTN--------------------A 348 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i----~~~~i~~~~~i~~~~~i~~--------------------~ 348 (410)
+.||+++.|++++.|.. ++.||++|.|++.+.+ .+++||++|.|+++|+|.. +
T Consensus 59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v 138 (215)
T 2wlg_A 59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDV 138 (215)
T ss_dssp EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCE
T ss_pred EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCe
Confidence 88899999999888863 4999999999995555 5789999999999999985 4
Q ss_pred EECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 349 IVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 349 ~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+|+++|+||.++.|.++ +.||++|.|++++++.+. |++++++.
T Consensus 139 ~Igd~v~IG~~~~I~~g---------v~Ig~~~vIgagsvV~~~-vp~~~i~~ 181 (215)
T 2wlg_A 139 IIGNHVWLGRNVTILKG---------VCIPNNVVVGSHTVLYKS-FKEPNCVI 181 (215)
T ss_dssp EECTTCEECTTCEECTT---------CEECSSCEECTTCEECSC-CCCCSCEE
T ss_pred EECCCcEECCCCEECCC---------CEECCCCEECCCCEEcCc-cCCCeEEE
Confidence 99999999999999988 999999999999999654 46676665
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=116.95 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=77.1
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-----eeEECCCCEECCCCEEEe---------eEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-----SCIILDGVEIMENAVVTN---------AIVGWK 353 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------~~i~~~ 353 (410)
.+..|++.++|++++.|++++.|+++++|..++.++.+|.|. +++||++|.|+.++.|.. ++||++
T Consensus 160 ~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDn 239 (332)
T 3fsy_A 160 TGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKR 239 (332)
T ss_dssp TTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---CCBCEECTT
T ss_pred CCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCccceEECCC
Confidence 467777777777777777777777777777777777777774 378999999999998874 899999
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEE
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIV 394 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v 394 (410)
|.||.++.| + +.||++|+||+|++| +++.|
T Consensus 240 v~IGanAtI-g----------VtIGd~~iIGAGSVVtkdt~I 270 (332)
T 3fsy_A 240 CLLGANSGL-G----------ISLGDDCVVEAGLYVTAGTRV 270 (332)
T ss_dssp CEECTTCEE-C----------SCBCSSCEECTTCEECTTCEE
T ss_pred CEECCCCEE-e----------eEECCCCEECCCCEECCCCEE
Confidence 999999999 4 899999999999999 34443
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=121.80 Aligned_cols=107 Identities=12% Similarity=0.228 Sum_probs=80.6
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
++.+|||||| .|+||+. ..||+|+|++|+|||+|+++.+.+ |+|++. ..+.+.+++. .+.
T Consensus 3 ki~aIILAaG--~ssRmg~---~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~--------~v~ 68 (371)
T 1w55_A 3 EMSLIMLAAG--NSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTK--------NYE 68 (371)
T ss_dssp CEEEEEECCS--CCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCS--------SSE
T ss_pred ccEEEEECCC--CCccCCC---CCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhC--------CCE
Confidence 5899999999 9999974 579999999999999999999873 777766 4444333211 144
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhc
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY 133 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~ 133 (410)
++. ...|..++++.+++.+. .+.+++++||.++ ...+..+++.+.+.
T Consensus 69 ~v~--~g~g~~~sv~~aL~~l~---~d~vlv~~~D~Pli~~~~i~~li~~~~~~ 117 (371)
T 1w55_A 69 FIE--GGDTRAESLKKALELID---SEFVMVSDVARVLVSKNLFDRLIENLDKA 117 (371)
T ss_dssp EEE--CCSSHHHHHHHHHTTCC---SSEEEEEETTCTTCCHHHHHHHHTTGGGC
T ss_pred EEe--CCCChHHHHHHHHHhcC---CCeEEEEeCCcccCCHHHHHHHHHHHHhc
Confidence 442 34678899999888774 4789999999975 34588888776554
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-12 Score=117.48 Aligned_cols=78 Identities=24% Similarity=0.351 Sum_probs=69.2
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEE-------------EeeEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVV-------------TNAIVGWK 353 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~~~i~~~ 353 (410)
.++.+.+++.|++++.|+++|.|++++.||++|.|++++.|. ++.||++|.|+++|.| .+++|+++
T Consensus 27 p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~ 106 (283)
T 4eqy_A 27 PTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDR 106 (283)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSS
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEECCC
Confidence 467788888888888888888888899999999999999997 7999999999999999 37899999
Q ss_pred CEECCCcEEccC
Q 015259 354 SSIGRWSRVQAE 365 (410)
Q Consensus 354 ~~i~~~~~i~~~ 365 (410)
+.|++++.|..+
T Consensus 107 ~~Ig~~~~I~~g 118 (283)
T 4eqy_A 107 NTIREFTTIHTG 118 (283)
T ss_dssp CEECTTEEEECC
T ss_pred cccCcceeEccc
Confidence 999999999864
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.8e-12 Score=108.51 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=57.9
Q ss_pred CCcEECCCcEECCCCEEe---eeEECCCCEECCCCEEE-------------------eeEECCCCEECCCcEEccCCCCC
Q 015259 312 PNVSISANARIGAGVRLI---SCIILDGVEIMENAVVT-------------------NAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 312 ~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
.++.||+++.|+++|.|. ++.||++|.|+++|.|. .++|+++|+||.+|.|.++
T Consensus 77 ~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g---- 152 (190)
T 3hjj_A 77 YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPG---- 152 (190)
T ss_dssp TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTT----
T ss_pred CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCC----
Confidence 355555555555555554 45677777777777773 3688888888888888887
Q ss_pred cceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 370 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+.||++|+||++++|.+. |.+++++..
T Consensus 153 -----v~IG~~~vIgagsvV~~d-vp~~~v~~G 179 (190)
T 3hjj_A 153 -----VSIGDNAVIASGAVVTKD-VPNNVVVGG 179 (190)
T ss_dssp -----CEECTTCEECTTCEECSC-BCTTEEEET
T ss_pred -----CEECCCCEECCCCEECcc-cCCCCEEEc
Confidence 888888888888888654 456655543
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=112.28 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=50.3
Q ss_pred CcEECCCcEECCCCEEe---eeEECCCCEECCCCEEE-------------------eeEECCCCEECCCcEEccCCCCCc
Q 015259 313 NVSISANARIGAGVRLI---SCIILDGVEIMENAVVT-------------------NAIVGWKSSIGRWSRVQAEGDFNA 370 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~~~~~~~~ 370 (410)
++.||++|.|+++|.|. ..+||++|.|+++|.|. .++|+++|+||.++.|.++
T Consensus 76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g----- 150 (195)
T 3nz2_A 76 TIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQG----- 150 (195)
T ss_dssp TEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTT-----
T ss_pred CeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCC-----
Confidence 34444444444444442 23566666666666554 3588888888888888777
Q ss_pred ceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 371 KLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 371 ~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+.||++|+||+|++|.+. |.+++++..
T Consensus 151 ----v~IG~~~vIgagsvV~~d-vp~~~v~~G 177 (195)
T 3nz2_A 151 ----VTIGARSVVAANSVVNQD-VPPDTLVGG 177 (195)
T ss_dssp ----CEECTTCEECTTCEECSC-BCSSEEEET
T ss_pred ----CEECCCCEECCCCEEccc-cCCCcEEEc
Confidence 888888888888888544 355555443
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=117.48 Aligned_cols=106 Identities=8% Similarity=0.067 Sum_probs=72.8
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeee
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGIT 375 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~ 375 (410)
.+++++.|++.++|.+++.||++++|++++.|. ++.++.+|.|...+.+ +++||++|.|++++.|.+..+... .+.+
T Consensus 157 vI~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~i-Gv~IGd~v~IgpGa~IgG~~~~~~-~~~V 234 (332)
T 3fsy_A 157 VVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISA-GVVVGDGSDVGGGASIMGTLSGGG-THVI 234 (332)
T ss_dssp CCCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECT-TCEECTTCEECTTCEECSBCC----CCBC
T ss_pred ecCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceec-ceEECCCCEECCCCEEcCCCCCCC-ccce
Confidence 445555555555555566666666666666664 5556777777644332 489999999999999977432222 2238
Q ss_pred EECCCCEECCCcEE-----cceEEcCCcEEcccC
Q 015259 376 ILGEAVGVEDEVVV-----TNSIVLPNKTLNVSV 404 (410)
Q Consensus 376 ~i~~~~~i~~~~~v-----~~~~v~~~~~v~~~~ 404 (410)
+||++|+||+|++| .+|+|++|++|..+.
T Consensus 235 ~IGDnv~IGanAtIgVtIGd~~iIGAGSVVtkdt 268 (332)
T 3fsy_A 235 SIGKRCLLGANSGLGISLGDDCVVEAGLYVTAGT 268 (332)
T ss_dssp EECTTCEECTTCEECSCBCSSCEECTTCEECTTC
T ss_pred EECCCCEECCCCEEeeEECCCCEECCCCEECCCC
Confidence 99999999999988 678888888888774
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.8e-12 Score=123.84 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=47.8
Q ss_pred EECCCCEECCCCEEE--------eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 332 IILDGVEIMENAVVT--------NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 332 ~i~~~~~i~~~~~i~--------~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
.|+++|.|+.++.+. .++|+++|+||.++.|.++ +.||++|+||+|++|.+. |.+++++..+
T Consensus 374 ~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~g---------v~Ig~~~~igagsvV~~~-v~~~~~~~G~ 443 (459)
T 4fce_A 374 EIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP---------VTVANGATIGAGTTVTRD-VAENELVISR 443 (459)
T ss_dssp EECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESS---------EEECTTCEECTTCEECSC-BCTTCEECCC
T ss_pred EECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCC---------cEECCCCEECCCCEEccc-cCCCCEEEec
Confidence 455555555555553 3788888888888888877 999999999999999765 5788887664
Q ss_pred CC
Q 015259 404 VH 405 (410)
Q Consensus 404 ~~ 405 (410)
.+
T Consensus 444 p~ 445 (459)
T 4fce_A 444 VK 445 (459)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-12 Score=110.70 Aligned_cols=80 Identities=21% Similarity=0.208 Sum_probs=55.1
Q ss_pred CcEECCCcEECCCCEEe---eeEECCCCEECCCCEEE-------------------eeEECCCCEECCCcEEccCCCCCc
Q 015259 313 NVSISANARIGAGVRLI---SCIILDGVEIMENAVVT-------------------NAIVGWKSSIGRWSRVQAEGDFNA 370 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~~~~~~~~ 370 (410)
++.||++|.|+++|.|. ..+||++|.|+++|.|. .++|+++|+||.+|.|.++
T Consensus 74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g----- 148 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPG----- 148 (199)
T ss_dssp TEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTT-----
T ss_pred CcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCC-----
Confidence 44444444444444442 24677777777777772 4579999999999999887
Q ss_pred ceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 371 KLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 371 ~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
++||++|+||++++|.+. |.+++++..
T Consensus 149 ----v~IG~~~vIgagsvV~~d-vp~~~v~~G 175 (199)
T 3ftt_A 149 ----VTIGEGSVIGAGSVVTKD-IPPHSLAVG 175 (199)
T ss_dssp ----CEECTTCEECTTCEECSC-BCTTEEEET
T ss_pred ----CEECCCCEECCCCEECcc-cCCCCEEEE
Confidence 899999999999998654 355555543
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=8.1e-12 Score=107.77 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=58.1
Q ss_pred CcEECCCcEECCCCEEe---eeEECCCCEECCCCEE-------------------EeeEECCCCEECCCcEEccCCCCCc
Q 015259 313 NVSISANARIGAGVRLI---SCIILDGVEIMENAVV-------------------TNAIVGWKSSIGRWSRVQAEGDFNA 370 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i-------------------~~~~i~~~~~i~~~~~i~~~~~~~~ 370 (410)
++.||+++.|+.+|.|. ...||++|.|+++|.| ..++|+++|+||.+|.|.++
T Consensus 76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g----- 150 (188)
T 3srt_A 76 NIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPG----- 150 (188)
T ss_dssp TEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTT-----
T ss_pred CeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCC-----
Confidence 55566666666666654 2368888888888888 36789999999999999887
Q ss_pred ceeeeEECCCCEECCCcEEcceEEcCCcEE
Q 015259 371 KLGITILGEAVGVEDEVVVTNSIVLPNKTL 400 (410)
Q Consensus 371 ~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v 400 (410)
++||++|+||++++|.+. |.+++++
T Consensus 151 ----v~IG~~~vIgagsvV~~d-vp~~~v~ 175 (188)
T 3srt_A 151 ----ITIGDNVVIGAGSVVTKD-IPPNTVA 175 (188)
T ss_dssp ----CEECSSEEECTTCEECSC-BCSSEEE
T ss_pred ----cEECCCCEECCCCEECcc-cCCCCEE
Confidence 899999999999988655 3444444
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.5e-12 Score=113.66 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=57.9
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEE-------------EeeEECCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVV-------------TNAIVGWKS 354 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~~~i~~~~ 354 (410)
.+.+.+++.|++++.|+++|.|++++.||++|+|++++.|. ++.||++|.|+++|+| .+++|++++
T Consensus 7 ~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~ 86 (270)
T 1j2z_A 7 TAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDN 86 (270)
T ss_dssp TCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSC
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCC
Confidence 45666777777777777777777778888888888888876 7778888888888887 467777777
Q ss_pred EECCCcEEccC
Q 015259 355 SIGRWSRVQAE 365 (410)
Q Consensus 355 ~i~~~~~i~~~ 365 (410)
.|++++.|..+
T Consensus 87 ~I~~~~~I~~~ 97 (270)
T 1j2z_A 87 LIREFCMINPG 97 (270)
T ss_dssp EECTTCEECCC
T ss_pred EECCCeEEcCC
Confidence 77777777653
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.7e-12 Score=114.66 Aligned_cols=95 Identities=22% Similarity=0.312 Sum_probs=64.1
Q ss_pred CeEECCCCEECCCcEE--CCCcEECCCcEECCCCEEeeeEECCCCEECCCCE------------EEeeEECCCCEECCCc
Q 015259 295 DVYVHPSAKIHPTAKI--GPNVSISANARIGAGVRLISCIILDGVEIMENAV------------VTNAIVGWKSSIGRWS 360 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~------------i~~~~i~~~~~i~~~~ 360 (410)
++.|++++.|++++.| +.+++||++|+||++|.| +.+|+|+.++. -.+++|+++|+||++|
T Consensus 190 gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I-----~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga 264 (310)
T 3f1x_A 190 GIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKL-----YQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNA 264 (310)
T ss_dssp SCEECTTCEECSSCEEESCTTCEECTTCEECSSCEE-----ETTCEEECC--------------CCSCEECTTCEECTTC
T ss_pred CcEECCCCEECCCcEECCCCCeEECCceEEcCCCEE-----CCCCEECCCccccccccccccCCCCCCEECCCcEEcCCC
Confidence 4455555555555555 445556666655555555 33333333331 1256999999999999
Q ss_pred EEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcccC
Q 015259 361 RVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 404 (410)
Q Consensus 361 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~~ 404 (410)
+|.++ ++||++|+||+|++|.+. |+++++|..+.
T Consensus 265 ~Il~g---------v~IGd~a~IGagsvV~~d-Vp~~svv~GnP 298 (310)
T 3f1x_A 265 TILGR---------VTIGKGATVGGNIWVTEN-VPAGSRIVQRK 298 (310)
T ss_dssp EEESS---------CEECTTCEECSSCEECSC-BCTTCEECCCC
T ss_pred EECCC---------cEECCCCEECCCCEECCc-cCCCcEEECCC
Confidence 99987 999999999999999754 57777776654
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-12 Score=108.27 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=58.7
Q ss_pred CcEECCCcEECCCCEE---eeeEECCCCEECCCCEEE-------------------eeEECCCCEECCCcEEccCCCCCc
Q 015259 313 NVSISANARIGAGVRL---ISCIILDGVEIMENAVVT-------------------NAIVGWKSSIGRWSRVQAEGDFNA 370 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i---~~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~~~~~~~~ 370 (410)
++.||+++.|+.++.| .+..||++|.|+++|.|. .++|+++|+||.++.|.++
T Consensus 74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~g----- 148 (185)
T 2p2o_A 74 NIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPG----- 148 (185)
T ss_dssp TEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTT-----
T ss_pred CEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCC-----
Confidence 4444444444444444 245666777777766663 5799999999999999987
Q ss_pred ceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 371 KLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 371 ~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
++||++|+||+|++|.+. |++++++..+
T Consensus 149 ----v~IG~~~vIgagsvV~~~-vp~~~vv~G~ 176 (185)
T 2p2o_A 149 ----VTIGDNAVIASGAVVTKD-VPANAVVGGN 176 (185)
T ss_dssp ----CEECTTCEECTTCEECSC-BCTTEEEEET
T ss_pred ----CEECCCCEECCCCEECCC-CCCCcEEEcc
Confidence 999999999999999665 6777777654
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=107.50 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=54.0
Q ss_pred CCcEECCCcEECCCCEEee---eEECCCCEECCCCEEE-------------------eeEECCCCEECCCcEEccCCCCC
Q 015259 312 PNVSISANARIGAGVRLIS---CIILDGVEIMENAVVT-------------------NAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 312 ~~~~ig~~~~i~~~~~i~~---~~i~~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
.++.||++|.|+.+|.|.+ ++||++|.|+++|.|. .++|+++|+||.+|.|.++
T Consensus 74 ~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~g---- 149 (203)
T 1krr_A 74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG---- 149 (203)
T ss_dssp TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTT----
T ss_pred CCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCC----
Confidence 3444445555544544432 4556666666666553 4688888888888888887
Q ss_pred cceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 370 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
++||++|+||+|++|.+. |++++++..
T Consensus 150 -----v~IG~~~vIgagsvV~~d-vp~~~vv~G 176 (203)
T 1krr_A 150 -----VTIGDNSVIGAGSIVTKD-IPPNVVAAG 176 (203)
T ss_dssp -----CEECTTCEECTTCEECSC-BCTTEEEET
T ss_pred -----eEECCCCEECCCCEECCC-cCCCcEEEc
Confidence 889999999888888554 466655543
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-12 Score=111.73 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=69.0
Q ss_pred CcEEccCeEECCCCEECCCcEEC-CCcEECCCcEECCCCEEe-eeEECCCCEECCCCEE---------------------
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIG-PNVSISANARIGAGVRLI-SCIILDGVEIMENAVV--------------------- 345 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~-~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i--------------------- 345 (410)
...+.+++.+++++.|++++.|. .+..+.++|+|++++.|+ +++||++|.|+++++|
T Consensus 23 ~~~~~~~~v~~~~v~IG~~t~i~~~~~~~~~~~vI~~~~~Ig~~v~IG~~~~Ig~~v~i~~~g~~~~~~~~~~~~~~~~~ 102 (220)
T 4hur_A 23 NLQFIKPTITNENILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRM 102 (220)
T ss_dssp SEEESGGGCCSTTEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCT
T ss_pred ceEEecceEECCCEEECCCeEECCcCCcccCCeEEeCCCEECCCeEECCCCEECCCCEEEECCCCcccCCcceeeeeecc
Confidence 44555566667777777766662 133333455555555554 2456777777766664
Q ss_pred ---------------EeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 346 ---------------TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 346 ---------------~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
.+++||++|+||.+|.|.++ +.||++|.||++++|.+. |.+++++..
T Consensus 103 ~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~g---------v~IG~gavIgagsvV~~d-Vp~~~vv~G 164 (220)
T 4hur_A 103 GWEKYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPG---------VKIGDGAIIAAEAVVTKN-VAPYSIVGG 164 (220)
T ss_dssp TGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEEET
T ss_pred cccccccccccccccCCeEECCCcEECCCCEEeCC---------CEECCCCEEcCCCEEccc-CCCCcEEeC
Confidence 25788999999999998887 889999999999888654 456655543
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.1e-12 Score=106.65 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=60.1
Q ss_pred CcEECCCcEECCCCEEe---eeEECCCCEECCCCEEE-------------------eeEECCCCEECCCcEEccCCCCCc
Q 015259 313 NVSISANARIGAGVRLI---SCIILDGVEIMENAVVT-------------------NAIVGWKSSIGRWSRVQAEGDFNA 370 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~~~~~~~~ 370 (410)
++.||+++.|++++.|. +.+||++|.|+++|.|. +++|+++|+||.++.|.++
T Consensus 72 ~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~g----- 146 (182)
T 1ocx_A 72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPG----- 146 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTT-----
T ss_pred CEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCC-----
Confidence 44455555555555552 45677777777777772 5899999999999999887
Q ss_pred ceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 371 KLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 371 ~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
++||++|+|++|++|.+. |++++++..+
T Consensus 147 ----v~IG~~~vIgagsvV~~d-ip~~~vv~G~ 174 (182)
T 1ocx_A 147 ----VTIGDNVVVASGAVVTKD-VPDNVVVGGN 174 (182)
T ss_dssp ----CEECTTCEECTTCEECSC-BCSSEEEETT
T ss_pred ----cEECCCCEECCCCEECCc-CCCCcEEEcc
Confidence 999999999999999765 6777777553
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=115.20 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=70.6
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-e-------------------
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-N------------------- 347 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~------------------- 347 (410)
.++.+.+++.|+++|.|+++|.|. ++.|+++++|++++.|.+++|+++|.|+.++++. +
T Consensus 76 ~~~~I~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I 154 (334)
T 2pig_A 76 GNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQI 154 (334)
T ss_dssp TTCEEESSCEEESSCEECTTCEEE-SCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEE
T ss_pred CCcEEeeeeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEE
Confidence 367777788888888888888888 8889999999989988888777777666665544 3
Q ss_pred --------eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceE-----EcCCcEEcc
Q 015259 348 --------AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSI-----VLPNKTLNV 402 (410)
Q Consensus 348 --------~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~-----v~~~~~v~~ 402 (410)
++|+++|.|+++|.|.+ ++|++++.|++++.+.++. |++++.|..
T Consensus 155 ~~~a~I~~s~I~~g~~I~~~a~I~~----------svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~g 212 (334)
T 2pig_A 155 YDRATVNHSRIVHQVQLYGNATITH----------AFIEHRAEVFDFALIEGDKDNNVWICDCAKVYG 212 (334)
T ss_dssp CTTCEEESCEEETTCEECTTCEEES----------EEECTTCEECTTCEEECCSSCCEEECTTCEECT
T ss_pred CCCCEEeccEEcCCCEEcCCeEEeC----------cEEcCCCEECCCcEECCceeccEEECCCcEEee
Confidence 33444444444445442 6777777777777774443 444444443
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-12 Score=119.22 Aligned_cols=140 Identities=20% Similarity=0.179 Sum_probs=80.6
Q ss_pred eeEEeccceeeecCC--ccchhhhhHHHHhhhh-----h--cCCCcccCCCCCCCcEEccCeEECCCCEECCCcEECCC-
Q 015259 244 LYTYETMDFWEQIKT--PGMSLKCSGLYLAQFR-----L--TSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPN- 313 (410)
Q Consensus 244 i~~~~~~g~~~~i~t--~~~~~~an~~~~~~~~-----~--~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~- 313 (410)
++.+....+|.+.+. |++|......+..+-. . ..+..........+..|.+++.|++++.|++++.|+++
T Consensus 163 ~~g~l~~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~~v~p~~gv~I~p~a~I~~~a~IG~gv~Ig~g~ 242 (387)
T 2rij_A 163 AFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRMGASLAAGTTIMPGA 242 (387)
T ss_dssp HHHHSCCEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGGTCCCCTTCEESCGGGBBTTCBCCTTCEECSSS
T ss_pred hhccCceeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhccccCCCCEEEcCCCEECCCeEEcCCCEEeCCe
Confidence 344445678998888 5666666655543210 0 01222111111125666666666666666666666664
Q ss_pred cEECCCcE-ECCCCEEe-----eeEECCCCEECCCCEEE----e-----eEECCCCEECCCcEEccCCCCCcceeeeEEC
Q 015259 314 VSISANAR-IGAGVRLI-----SCIILDGVEIMENAVVT----N-----AIVGWKSSIGRWSRVQAEGDFNAKLGITILG 378 (410)
Q Consensus 314 ~~ig~~~~-i~~~~~i~-----~~~i~~~~~i~~~~~i~----~-----~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~ 378 (410)
++|+.++. ||+ |.|. +++||++|.|+.++.|. + ++|+++|+||.+|. .+ +.||
T Consensus 243 a~Ig~nv~vIG~-~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv--~G---------V~IG 310 (387)
T 2rij_A 243 SYVNFNAGTTGA-CMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV--TG---------IPLG 310 (387)
T ss_dssp CEECTTCEESSC-CEECSEECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE--EC---------SCBC
T ss_pred eEECCCcEEECC-EEEeeEECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc--CC---------cEEC
Confidence 66666666 555 5442 45666666666666432 2 56777777777776 33 7888
Q ss_pred CCCEECCCcEE-cceEEc
Q 015259 379 EAVGVEDEVVV-TNSIVL 395 (410)
Q Consensus 379 ~~~~i~~~~~v-~~~~v~ 395 (410)
++|+||+|++| +++.+.
T Consensus 311 dgavIGAGsVVt~dv~i~ 328 (387)
T 2rij_A 311 DNCIVDAGIAVLEGTKFL 328 (387)
T ss_dssp TTCEECTTCEECTTCEEE
T ss_pred CCCEECCCCEECCCceee
Confidence 88888888877 344444
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-11 Score=110.40 Aligned_cols=83 Identities=16% Similarity=0.266 Sum_probs=51.5
Q ss_pred CeEECCCCEECCCcEEC--CCcEECCCcEECCCCEEeeeEECCCCEECCCCEE---EeeEECCCCEECCCcEEccCCCCC
Q 015259 295 DVYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLISCIILDGVEIMENAVV---TNAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i---~~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
++.|++++.|++++.|. .+++||++|+||++|.| +.+++|+.+... .+++|+++|+||.+++|.++
T Consensus 164 gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I-----~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~g---- 234 (287)
T 3mc4_A 164 QTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSI-----LHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGN---- 234 (287)
T ss_dssp CCEECTTCEECSSCEEESCTTCEECTTCEECSSCEE-----ETTCEEEC-----CCCSCEECTTCEECTTCEEESS----
T ss_pred CeEECCCCEECCCeEEccCCCeEECCCeEECCCCEE-----cCCCEEcCCcccCCCcCCEECCCCEECCCCEECCC----
Confidence 34455555555555554 34555555555555544 333333322111 24789999999999999887
Q ss_pred cceeeeEECCCCEECCCcEEcc
Q 015259 370 AKLGITILGEAVGVEDEVVVTN 391 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~ 391 (410)
++||++|+||+|++|.+
T Consensus 235 -----v~IG~~a~IGagsvV~k 251 (287)
T 3mc4_A 235 -----IQVGQCSKIAAGSVVLK 251 (287)
T ss_dssp -----CEECTTCEECTTCEECS
T ss_pred -----cEECCCCEECCCCEEcc
Confidence 89999999999998843
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=106.15 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=19.1
Q ss_pred cCeEECCCCEECCCcEEC--CCcEECCCcEECCCCEEe
Q 015259 294 GDVYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLI 329 (410)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~ 329 (410)
.++.||+++.|+++|.|. ..++||++|.||++|.|.
T Consensus 75 ~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~ 112 (195)
T 3nz2_A 75 KTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFY 112 (195)
T ss_dssp TTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEE
T ss_pred CCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEe
Confidence 344555555555555552 234566666666666554
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=120.53 Aligned_cols=89 Identities=17% Similarity=0.258 Sum_probs=75.5
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCC---------------
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWK--------------- 353 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~--------------- 353 (410)
...+.+.+.|++++.| .++.| .++.||++|+|+. +.|.+++||++|.||++|+|.++++..+
T Consensus 308 ~~~i~~~~~i~~~~~i-~~~~I-~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~ 384 (451)
T 1yp2_A 308 SAPIYTQPRYLPPSKM-LDADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAK 384 (451)
T ss_dssp SSCCCCCCCCCCCEEE-EEEEE-EEEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTT
T ss_pred CCeeccCCccCCCeEE-cceEE-eCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECCCCccccccccccccc
Confidence 4455566666666666 56777 4789999999986 8888999999999999999998888777
Q ss_pred ----CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc
Q 015259 354 ----SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 354 ----~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
+.||+++.|.+ ++||++|+||+|+++.
T Consensus 385 g~~~~~Ig~~~~i~~----------~~Ig~~~~IG~~~~i~ 415 (451)
T 1yp2_A 385 GSVPIGIGKNCHIKR----------AIIDKNARIGDNVKII 415 (451)
T ss_dssp TCCCSEECTTCEEES----------EEECTTCEECTTCEEC
T ss_pred CceeEEECCCCEEec----------cEeCCCcEECCCCEEe
Confidence 99999999987 8999999999999994
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.7e-11 Score=117.05 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=64.0
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEe-----------------eeEECCCCEECCCCEEE--------eeEECC
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLI-----------------SCIILDGVEIMENAVVT--------NAIVGW 352 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----------------~~~i~~~~~i~~~~~i~--------~~~i~~ 352 (410)
|++++.|++++.|.+++.||++|.||+++.|. ++.||++|.||.++.+. .++|++
T Consensus 320 ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~ 399 (456)
T 2v0h_A 320 VGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGD 399 (456)
T ss_dssp ECTTCEECSSEEECTTCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECS
T ss_pred CCCCcEECCccEECCCCEECCCCEECCCCEEeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECC
Confidence 33444444444444445555555544444432 23667777777777665 478888
Q ss_pred CCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 353 KSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 353 ~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
+|+||.++.|.++ +.||+++.|++++.+.+. |.+++++..+
T Consensus 400 ~~~Ig~~~~i~~~---------v~Ig~~~~ig~~s~v~~~-v~~~~~~~G~ 440 (456)
T 2v0h_A 400 DVFVGSDTQLVAP---------VKVANGATIGAGTTITRD-VGENELVITR 440 (456)
T ss_dssp SCEECTTCEEEES---------EEECTTCEECTTCEECSC-BCTTCEECCC
T ss_pred CCEECCCCEEcCC---------cEECCCCEECCCCEECCC-cCCCCEEEcc
Confidence 8888888888877 999999999999999654 5677777554
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6e-11 Score=118.28 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=79.9
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEe--------eEECCCCEECCCcE
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTN--------AIVGWKSSIGRWSR 361 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~--------~~i~~~~~i~~~~~ 361 (410)
+.+.+++.+++++.|+..+.+. +++||++|+|+..+.|++++||+||.||.++.+.+ ++||++|.||.++.
T Consensus 347 ~~i~~~~~i~~~v~IG~~v~ik-~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~ 425 (501)
T 3st8_A 347 TYLRPGTALGADGKLGAFVEVK-NSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTM 425 (501)
T ss_dssp EEECTTCEECTTCEEEETEEEE-SCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCE
T ss_pred eeecCCcEEccccccCCeEEEc-cceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCE
Confidence 3344444444444444444444 78899999999999999999999999999998853 99999999999999
Q ss_pred EccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEE
Q 015259 362 VQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 400 (410)
Q Consensus 362 i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v 400 (410)
|.++ +.||++|.|++|++|.+.+ .+++.+
T Consensus 426 l~~~---------v~Ig~~~~i~ags~v~~dv-p~~~l~ 454 (501)
T 3st8_A 426 FVAP---------VTIGDGAYTGAGTVVREDV-PPGALA 454 (501)
T ss_dssp EESS---------EEECTTCEECTTCEECSCB-CTTCEE
T ss_pred EcCC---------cEECCCCEECCCCEECccc-CCCCeE
Confidence 9988 9999999999999996654 677643
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-10 Score=108.74 Aligned_cols=181 Identities=16% Similarity=0.230 Sum_probs=130.6
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCcccccc---CCccchhhhHhhcc-------------c-----EEEecccchHHH
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACK-------------R-----IYLVGFYEEREF 65 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi---~g~pli~~~l~~l~-------------~-----i~vv~~~~~~~i 65 (410)
.++.+|+|||| .|+||+. ..||+|+|+ .|+|++++.++.+. . ++....+..+.+
T Consensus 34 gkvavvlLAGG--~GTRLG~---~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t 108 (405)
T 3oc9_A 34 GKTALITPAGG--QGSRLGF---EHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEI 108 (405)
T ss_dssp TCEEEEEECCS--BCTTTTC---CSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHH
T ss_pred CceEEEEecCC--CcccccC---CCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHH
Confidence 37889999999 9999966 899999999 99999999998773 1 555566677888
Q ss_pred HHHHHhhcccCCc---cEEEee---------------------CCCCCCcHHHHHHh-----HHHhcccCCCcEEEEcCC
Q 015259 66 ALYVSSISNELRI---PVRYLR---------------------EDKPHGSAGALYNF-----RDLIMEDNPSHIFLLNCD 116 (410)
Q Consensus 66 ~~~~~~~~~~~~~---~i~~i~---------------------~~~~~g~~~~l~~~-----~~~l~~~~~~~~lvl~~D 116 (410)
.+++++. +.+++ .+.+.. ...+.|+++.+... ++.+.+..-+++++.+.|
T Consensus 109 ~~~f~~~-~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvD 187 (405)
T 3oc9_A 109 NNYFKEH-QYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVD 187 (405)
T ss_dssp HHHHHHT-GGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTT
T ss_pred HHHHHhC-cccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCC
Confidence 9999874 44554 355432 22356777766543 233433345788999999
Q ss_pred c-ccCCChHHHHHHHHhcCCceEEEEEecCcccc-cccceEEEcCCCCcEEEEecCCCC---------ccccceeeeEEE
Q 015259 117 V-CCSFPLPEMLDAHRNYGGMGTILVIKVSAESA-SQFGELVADPDTNELLHYTEKPET---------FVSDLINCGVYV 185 (410)
Q Consensus 117 ~-i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~d~~~~~v~~i~ekp~~---------~~~~l~~~Giy~ 185 (410)
. +.......++..|.++++++++.+.+. ..+ ...|.+.......+|+.+.+.|.. ...+..+.++++
T Consensus 188 N~L~~~~Dp~~lg~~~~~~~d~~~kvv~k--~~~dek~Gvl~~~dg~~~vvEysei~~e~e~~~~~g~l~fn~~Ni~~h~ 265 (405)
T 3oc9_A 188 NILCKDVDPNMIGYMDLLQSEICIKIVKK--GFKEEKVGVLVKEQERIKVVEYTELTDELNKQLSNGEFIYNCGHISING 265 (405)
T ss_dssp BTTCCSSCHHHHHHHHHTTCSEEEEEEEC--CSTTCSCCEEEEETTEEEEECGGGCCTTTTCBCTTSCBSSCEEEEEEEE
T ss_pred CcccccCCHHHHHHHHHcCCCEEEEEEEC--CCCCCccceEEEECCeeEEEEEeeCCHHHhhcCCCCceeeccceeEeee
Confidence 9 677788889999999999988888775 333 467877643133467777775543 124456788999
Q ss_pred EcHHHHHHhh
Q 015259 186 FTPDIFNAIQ 195 (410)
Q Consensus 186 ~~~~~~~~l~ 195 (410)
|+.+.++.+.
T Consensus 266 fs~~fL~~i~ 275 (405)
T 3oc9_A 266 YSTSFLEKAA 275 (405)
T ss_dssp EEHHHHHHHT
T ss_pred cCHHHHHHhh
Confidence 9999987665
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=99.20 E-value=8.4e-11 Score=108.38 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=57.9
Q ss_pred EccCeEECCCCEECCCcEE--CCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCc----EEccC
Q 015259 292 IIGDVYVHPSAKIHPTAKI--GPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWS----RVQAE 365 (410)
Q Consensus 292 i~~~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~----~i~~~ 365 (410)
...++.|++++.|++++.| +.+++||++|+||++|.| +.+++||.+ +.+++++.++.++ +|+.+
T Consensus 160 ~~~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I-----~~~vtIG~~-----~~ig~~~~i~~~~~~~~~IGd~ 229 (313)
T 3q1x_A 160 SYTSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRI-----YQSVTLGAM-----HFQEEGGVIKRGTKRHPTVGDY 229 (313)
T ss_dssp HHHCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEE-----CTTCEEECC-----CCCCTTCCCCCCSSCSCEECSS
T ss_pred ecCCeEECCCCEECCCEEECCCCceEECCCcEECCCCEE-----CCCcEEeCC-----cEECCCceEcCCCccCCEECCC
Confidence 4456777777777777777 344556665555555554 223333222 3334444444432 44444
Q ss_pred CCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 366 GDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 366 ~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||.+|.|..+++| .+|+||+|++|..++++..+
T Consensus 230 ---------v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp~gs~ 265 (313)
T 3q1x_A 230 ---------VTIGTGAKVLGNIIVGSHVRIGANCWIDRDVDSNQT 265 (313)
T ss_dssp ---------CEECTTCEEESSCEECSSEEECTTCEECSCBCSSEE
T ss_pred ---------CEECCCCEECCCcEECCCCEECCCCEECCCcCCCCE
Confidence 455555555555555 57888899999988888654
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=114.56 Aligned_cols=97 Identities=23% Similarity=0.266 Sum_probs=63.9
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEee-----------------eEECCCCEECCCCEEE--------eeEEC
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-----------------CIILDGVEIMENAVVT--------NAIVG 351 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-----------------~~i~~~~~i~~~~~i~--------~~~i~ 351 (410)
.|++++.|++++.|.++++||++|.||+++.|.+ +.||++|.||.++.+. .++|+
T Consensus 327 ~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig 406 (468)
T 1hm9_A 327 SVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIG 406 (468)
T ss_dssp EECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEEC
T ss_pred ccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEEC
Confidence 4455555555555555555555555554444332 3456666666666664 37788
Q ss_pred CCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 352 WKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 352 ~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
++|+||.++.|.++ +.||+++.|++++.|.+ -|.+++++..+
T Consensus 407 ~~~~Ig~~~~i~~~---------v~Ig~~~~i~~~s~v~~-~v~~~~~~~G~ 448 (468)
T 1hm9_A 407 DNVFVGSNSTIIAP---------VELGDNSLVGAGSTITK-DVPADAIAIGR 448 (468)
T ss_dssp TTCEECTTCEEESS---------CEECTTCEECTTCEECS-CBCTTCEECCS
T ss_pred CCeEECCCCEEeCC---------cEECCCCEECCCCEECC-CCCCCCEEEcC
Confidence 88888888888777 89999999999999865 35677777554
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=104.10 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=34.5
Q ss_pred eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 347 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 347 ~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+++|+++|.||.++.|.++ ++||++|+||+|++|.+. |.+++++.
T Consensus 189 ~~~IGd~v~IGaga~Il~g---------v~IG~~a~IGagsvV~~d-Vp~~~~v~ 233 (267)
T 1ssq_A 189 HPKVREGVMIGAGAKILGN---------IEVGKYAKIGANSVVLNP-VPEYATAA 233 (267)
T ss_dssp SCEECTTCEECTTCEEESS---------CEECTTCEECTTCEECSC-BCTTCEEE
T ss_pred CeEECCCeEEcCCCEEeCC---------cEECCCCEECCCCEEccC-CCCCCEEE
Confidence 4688888999988888877 889999999988888543 35555543
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.9e-10 Score=110.54 Aligned_cols=180 Identities=18% Similarity=0.263 Sum_probs=125.1
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccC---CccchhhhHhhccc-------------------EEEecccchHHH
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR-------------------IYLVGFYEEREF 65 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~---g~pli~~~l~~l~~-------------------i~vv~~~~~~~i 65 (410)
++.+|+|||| .|+||+ ...||+|+|++ |+|++++.++.+.. +++...+..+.+
T Consensus 103 kvavvlLaGG--~GTRLg---~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 103 EVAVLLMAGG--QGTRLG---SSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp CEEEEEEEES--BCGGGT---CSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CeEEEEEcCC--ccccCC---CCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 6999999999 999995 48999999999 99999999987652 455566667778
Q ss_pred HHHHHhhcccCCc---cEEEeeCC----------------------CCCCcHHHHHHh-----HHHhcccCCCcEEEEcC
Q 015259 66 ALYVSSISNELRI---PVRYLRED----------------------KPHGSAGALYNF-----RDLIMEDNPSHIFLLNC 115 (410)
Q Consensus 66 ~~~~~~~~~~~~~---~i~~i~~~----------------------~~~g~~~~l~~~-----~~~l~~~~~~~~lvl~~ 115 (410)
.+++++. ..+++ .|.+..|. .+.|+++.+... ++.+.+..-+++.+.+.
T Consensus 178 ~~~~~~~-~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~v 256 (486)
T 2yqc_A 178 ESFFIEN-NYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCV 256 (486)
T ss_dssp HHHHHHT-GGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEET
T ss_pred HHHHhhc-cccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECC
Confidence 9999873 34554 33322111 366888876544 23333334578888888
Q ss_pred CcccC--CChHHHHHHHHhcCCceEEEEEecCcccc-cccceEEEcCCCC--cEEEEecCCCC------------ccccc
Q 015259 116 DVCCS--FPLPEMLDAHRNYGGMGTILVIKVSAESA-SQFGELVADPDTN--ELLHYTEKPET------------FVSDL 178 (410)
Q Consensus 116 D~i~~--~~l~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~d~~~~--~v~~i~ekp~~------------~~~~l 178 (410)
|.+.. .| ..++..|..+++++++.+.+. ..+ ...|++.....++ +|+.+.++|.. ...+.
T Consensus 257 DN~l~~~~D-p~~lg~~~~~~~~~~~~vv~k--~~~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~ 333 (486)
T 2yqc_A 257 DNCLVKVAD-PIFIGFAIAKKFDLATKVVRK--RDANESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRA 333 (486)
T ss_dssp TBTTCCTTC-HHHHHHHHHHTCSEEEEEEEC--CSTTCCCCEEEEETTTTEEEEECGGGSCHHHHHCEETTEEEEESSCE
T ss_pred CCceeeccC-HHHHHHHHHcCCCEEEEEEEc--CCCCCceeEEEEEecCCCEEEEEEecCCHHHhhcccccccccccccc
Confidence 97743 34 457888888899988877764 222 4577766431134 47777777631 12467
Q ss_pred eeeeEEEEcHHHHHH-hhh
Q 015259 179 INCGVYVFTPDIFNA-IQG 196 (410)
Q Consensus 179 ~~~Giy~~~~~~~~~-l~~ 196 (410)
.++++|+|+.++++. +.+
T Consensus 334 ~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 334 ANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp EEEEEEEEEHHHHHHHHHH
T ss_pred eeEEEEEEeHHHHHHHHHh
Confidence 899999999999876 554
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-10 Score=103.66 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=55.3
Q ss_pred CeEECCCCEECCCcEEC--CCcEECCCcEECCCCEEeeeEECCCCEECCCCE---EEeeEECCCCEECCCcEEccCCCCC
Q 015259 295 DVYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLISCIILDGVEIMENAV---VTNAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
++.|++++.|++++.|. .+++||++|+||++|.| +.+|+|+.... ..+++|+++|.||.++.|.++
T Consensus 157 g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I-----~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilgg---- 227 (289)
T 1t3d_A 157 QVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSI-----LQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGN---- 227 (289)
T ss_dssp SCEECTTCEECSSCEECSCTTCEECTTCEECSSCEE-----CTTCEEECCSSSCSSCSCEECTTCEECTTCEEESS----
T ss_pred ceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEE-----cCCcEECCCccccCCCCeEECCCeEECCCCEEecC----
Confidence 33444444444444444 24445544444444444 33333332111 125789999999999999887
Q ss_pred cceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 370 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
++||++|+||+|++|.+. |.+++++.
T Consensus 228 -----v~IG~~a~IGagsvV~~d-Vp~~s~v~ 253 (289)
T 1t3d_A 228 -----IEVGRGAKIGAGSVVLQP-VPPHTTAA 253 (289)
T ss_dssp -----CEECTTCEECTTCEECSC-BCTTCEEE
T ss_pred -----cEECCCCEECCCCEEccC-CCCCCEEE
Confidence 899999999999999543 35555543
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=104.19 Aligned_cols=76 Identities=25% Similarity=0.164 Sum_probs=68.6
Q ss_pred CcEEccCeEECCCCEEC--CCcEECCCcEECCCcEECCCCEEee---------eEECCCCEECCCCEEE-eeEECCCCEE
Q 015259 289 NATIIGDVYVHPSAKIH--PTAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSSI 356 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (410)
+..|++++.||+++.|+ .+++|++++.||++|+|+++++|++ ++||++|.||.++.|. +++||++|+|
T Consensus 164 gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~a~I 243 (287)
T 3mc4_A 164 QTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKI 243 (287)
T ss_dssp CCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTTCEE
T ss_pred CeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCCCEE
Confidence 67889999999999998 7899999999999999999999986 6899999999999988 6889999888
Q ss_pred CCCcEEcc
Q 015259 357 GRWSRVQA 364 (410)
Q Consensus 357 ~~~~~i~~ 364 (410)
|+++.|..
T Consensus 244 GagsvV~k 251 (287)
T 3mc4_A 244 AAGSVVLK 251 (287)
T ss_dssp CTTCEECS
T ss_pred CCCCEEcc
Confidence 88888876
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-10 Score=98.00 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=17.3
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCcc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEI 408 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~ 408 (410)
++||++|+||++++| .+|+|++|++|+.++++..
T Consensus 135 v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~ 175 (190)
T 3hjj_A 135 VKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNV 175 (190)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCCEECcccCCCC
Confidence 344444444444444 3555556666665655543
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=101.44 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=33.1
Q ss_pred eEECCCCEECCCcEEC--CCcEECCCcEECCCCEEeee-------------EECCCCEECCCCEEE-eeEECCCCEECCC
Q 015259 296 VYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLISC-------------IILDGVEIMENAVVT-NAIVGWKSSIGRW 359 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~-------------~i~~~~~i~~~~~i~-~~~i~~~~~i~~~ 359 (410)
+.||+++.|+++|.|. ..++||++|.||++|.|.++ .++..++||++|.|. +++|.++++||++
T Consensus 75 ~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~ 154 (199)
T 3ftt_A 75 VKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEG 154 (199)
T ss_dssp EEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEECTT
T ss_pred cEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEECCC
Confidence 4444444444444442 22455555555555555322 234455555555554 4455555555555
Q ss_pred cEEccC
Q 015259 360 SRVQAE 365 (410)
Q Consensus 360 ~~i~~~ 365 (410)
|.|+.+
T Consensus 155 ~vIgag 160 (199)
T 3ftt_A 155 SVIGAG 160 (199)
T ss_dssp CEECTT
T ss_pred CEECCC
Confidence 444444
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=98.40 Aligned_cols=19 Identities=5% Similarity=0.153 Sum_probs=10.2
Q ss_pred cceEEcCCcEEcccCCCcc
Q 015259 390 TNSIVLPNKTLNVSVHQEI 408 (410)
Q Consensus 390 ~~~~v~~~~~v~~~~~~~~ 408 (410)
.+|+|++|++|..++++..
T Consensus 155 ~~~vIgagsvV~~dvp~~~ 173 (188)
T 3srt_A 155 DNVVIGAGSVVTKDIPPNT 173 (188)
T ss_dssp SSEEECTTCEECSCBCSSE
T ss_pred CCCEECCCCEECcccCCCC
Confidence 3555555555555555543
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6e-10 Score=96.76 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=7.9
Q ss_pred cEECCCcEECCCCEEe
Q 015259 314 VSISANARIGAGVRLI 329 (410)
Q Consensus 314 ~~ig~~~~i~~~~~i~ 329 (410)
+.||++|.|+++|.|.
T Consensus 96 i~IG~~v~Ig~~v~I~ 111 (203)
T 1krr_A 96 VTIGDNVLIAPNVTLS 111 (203)
T ss_dssp EEECSSCEECSSCEEE
T ss_pred eEECCCCEECCCCEEe
Confidence 4455555555555543
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.4e-10 Score=100.09 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=55.8
Q ss_pred CcEECCCcEECCCCEE--eeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEcc---C-----CCCC------------
Q 015259 313 NVSISANARIGAGVRL--ISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA---E-----GDFN------------ 369 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i--~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---~-----~~~~------------ 369 (410)
++++++++.||+++.| .+..++++|.|+++++|. +++||++|.|+++++|.. + ..++
T Consensus 29 ~~v~~~~v~IG~~t~i~~~~~~~~~~~vI~~~~~Ig~~v~IG~~~~Ig~~v~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 108 (220)
T 4hur_A 29 PTITNENILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYM 108 (220)
T ss_dssp GGCCSTTEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGC
T ss_pred ceEECCCEEECCCeEECCcCCcccCCeEEeCCCEECCCeEECCCCEECCCCEEEECCCCcccCCcceeeeeecccccccc
Confidence 4444444444444444 233334455555555544 356666777776666521 0 0011
Q ss_pred ------cceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 370 ------AKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 370 ------~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
...|.++||++|+||++++| .+|+|++|++|..++++..+
T Consensus 109 ~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~dVp~~~v 161 (220)
T 4hur_A 109 PSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSI 161 (220)
T ss_dssp CCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred cccccccccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcccCCCCcE
Confidence 02344778888888887777 57888888888888887654
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-09 Score=100.85 Aligned_cols=76 Identities=22% Similarity=0.257 Sum_probs=54.7
Q ss_pred CcEEccCeEECCCCEE--CCCcEECCCcEECCCcEECCCCEEee-e-----------------EECCCCEECCCCEEE-e
Q 015259 289 NATIIGDVYVHPSAKI--HPTAKIGPNVSISANARIGAGVRLIS-C-----------------IILDGVEIMENAVVT-N 347 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i--~~~~~i~~~~~ig~~~~i~~~~~i~~-~-----------------~i~~~~~i~~~~~i~-~ 347 (410)
+..|++++.||+++.| +.+++|+++++||++|.|+++|+|++ + +||++|.||.+|.|. +
T Consensus 190 gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il~g 269 (310)
T 3f1x_A 190 GIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGR 269 (310)
T ss_dssp SCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEESS
T ss_pred CcEECCCCEECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEECCC
Confidence 5667777777777777 67777777777888788777777763 3 577777777777776 6
Q ss_pred eEECCCCEECCCcEEcc
Q 015259 348 AIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 348 ~~i~~~~~i~~~~~i~~ 364 (410)
++||++|+||+++.|..
T Consensus 270 v~IGd~a~IGagsvV~~ 286 (310)
T 3f1x_A 270 VTIGKGATVGGNIWVTE 286 (310)
T ss_dssp CEECTTCEECSSCEECS
T ss_pred cEECCCCEECCCCEECC
Confidence 66666666666666654
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-09 Score=96.83 Aligned_cols=76 Identities=24% Similarity=0.193 Sum_probs=62.1
Q ss_pred CcEEccCeEECCCCEEC--CCcEECCCcEECCCcEECCCCEEee---------eEECCCCEECCCCEEE-eeEECCCCEE
Q 015259 289 NATIIGDVYVHPSAKIH--PTAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSSI 356 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (410)
+..|++++.||+++.|+ .+++|+++++||++|+|+++++|++ ++||++|.||.++.|. +++||++|+|
T Consensus 137 g~~I~p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a~I 216 (267)
T 1ssq_A 137 DVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKI 216 (267)
T ss_dssp SCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEE
T ss_pred ceEeCCCCEECCCEEECCCCceEECCeeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCCEE
Confidence 56777888888888888 4788888889999999999998875 5788888888888877 6788888888
Q ss_pred CCCcEEcc
Q 015259 357 GRWSRVQA 364 (410)
Q Consensus 357 ~~~~~i~~ 364 (410)
|+++.+..
T Consensus 217 GagsvV~~ 224 (267)
T 1ssq_A 217 GANSVVLN 224 (267)
T ss_dssp CTTCEECS
T ss_pred CCCCEEcc
Confidence 88877765
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=99.00 E-value=4.4e-09 Score=95.60 Aligned_cols=76 Identities=24% Similarity=0.188 Sum_probs=63.8
Q ss_pred CcEEccCeEECCCCEEC--CCcEECCCcEECCCcEECCCCEEee---------eEECCCCEECCCCEEE-eeEECCCCEE
Q 015259 289 NATIIGDVYVHPSAKIH--PTAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSSI 356 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (410)
+..|++++.||+++.|+ .+++|+++++||++|+|+.+++|++ ++||++|.||.++.|. +++||++|+|
T Consensus 157 g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~I 236 (289)
T 1t3d_A 157 QVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKI 236 (289)
T ss_dssp SCEECTTCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEE
T ss_pred ceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECCCCEE
Confidence 56788889999999998 4789999999999999999999985 5788888888888877 6777777777
Q ss_pred CCCcEEcc
Q 015259 357 GRWSRVQA 364 (410)
Q Consensus 357 ~~~~~i~~ 364 (410)
|+++.+..
T Consensus 237 GagsvV~~ 244 (289)
T 1t3d_A 237 GAGSVVLQ 244 (289)
T ss_dssp CTTCEECS
T ss_pred CCCCEEcc
Confidence 77777765
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=96.02 Aligned_cols=46 Identities=24% Similarity=0.305 Sum_probs=31.4
Q ss_pred eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 347 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 347 ~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+++|+++|.||.++.|.++ +.||+++.|+++++|.+. |.+++++..
T Consensus 118 ~v~Igd~v~IG~~a~I~~g---------v~IG~~~~IgagsvV~~d-v~~~~~~~G 163 (219)
T 4e8l_A 118 DIEIGNDVWIGRDVTIMPG---------VKIGDGAIIAAEAVVTKN-VAPYSIVGG 163 (219)
T ss_dssp CEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEEET
T ss_pred CcEECCCeEECCCCEEcCC---------CEECCCCEECCCCEEccc-CCCCeEEEe
Confidence 5777777777777777776 777777777777777543 355555433
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-09 Score=93.28 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=41.9
Q ss_pred cCeEECCCCEECCCcEEC--CCcEECCCcEECCCCEEeee-------------EECCCCEECCCCEEE-eeEECCCCEEC
Q 015259 294 GDVYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLISC-------------IILDGVEIMENAVVT-NAIVGWKSSIG 357 (410)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~-------------~i~~~~~i~~~~~i~-~~~i~~~~~i~ 357 (410)
.++.||+++.|.+++.|. .++.||++|.|+++|.|... .++..++||++|.|. +++|.++++||
T Consensus 73 ~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~IG 152 (185)
T 2p2o_A 73 YNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIG 152 (185)
T ss_dssp TTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEEC
T ss_pred CCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEEC
Confidence 445555555555555553 45667777777777777422 234566666666655 55555555555
Q ss_pred CCcEEccC
Q 015259 358 RWSRVQAE 365 (410)
Q Consensus 358 ~~~~i~~~ 365 (410)
++|.|+.+
T Consensus 153 ~~~vIgag 160 (185)
T 2p2o_A 153 DNAVIASG 160 (185)
T ss_dssp TTCEECTT
T ss_pred CCCEECCC
Confidence 55555554
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-09 Score=91.88 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=13.2
Q ss_pred CCCEECCCCEEE-eeEECCCCEECCCcEEccC
Q 015259 335 DGVEIMENAVVT-NAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 335 ~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (410)
.+++||++|.|. +++|.++++||++|.|+.+
T Consensus 127 ~~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgag 158 (182)
T 1ocx_A 127 KPVTIGNNVWIGGRAVINPGVTIGDNVVVASG 158 (182)
T ss_dssp CCEEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred CCeEEeCCeEECCCCEECCCcEECCCCEECCC
Confidence 344444444443 3444444444444444333
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=105.70 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=67.8
Q ss_pred CEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCC
Q 015259 302 AKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAV 381 (410)
Q Consensus 302 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~ 381 (410)
..+..++.+.+.+.|+++. ++.++.+.++.||++|.| +++.|.+|+|+++|.|+++|.|.+ |+|+++|
T Consensus 297 ~~i~~~~~i~~~~~i~~~~-~~~~~~i~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~----------~~i~~~~ 364 (420)
T 3brk_X 297 WPIWTYAEITPPAKFVHDD-EDRRGSAVSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLEN----------AVVLPSV 364 (420)
T ss_dssp SCCCCCCCCCCCCEEECBC-SSCBCEEESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEE----------EEECTTC
T ss_pred CceeeccccCCCcEEeccc-ccCCcEecCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcc----------eEEcCCC
Confidence 3333333333444444321 233788888999999999 899999999999999999999987 9999999
Q ss_pred EECCCcEEcceEEcCCcEEccc
Q 015259 382 GVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 382 ~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
.|++|+.|.+|+|+.++.|+.+
T Consensus 365 ~i~~~~~i~~~~ig~~~~i~~~ 386 (420)
T 3brk_X 365 KIGRHAQLSNVVIDHGVVIPEG 386 (420)
T ss_dssp EECTTCEEEEEEECTTCEECTT
T ss_pred EECCCCEEeceEECCCCEECCC
Confidence 9999999966666666655543
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.3e-10 Score=103.42 Aligned_cols=102 Identities=18% Similarity=0.131 Sum_probs=58.7
Q ss_pred CCEECCCcEECCCcEECCCcEECCC-CEEe-eeE-ECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCCcceeeeE
Q 015259 301 SAKIHPTAKIGPNVSISANARIGAG-VRLI-SCI-ILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITI 376 (410)
Q Consensus 301 ~~~i~~~~~i~~~~~ig~~~~i~~~-~~i~-~~~-i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~ 376 (410)
++.|++++.|++++.||++|.|+++ +.|+ ++. ||+ |.|+. .|. +++||++|.|++++.|.+.- .....+.++
T Consensus 217 gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~nv~vIG~-~~I~~--~Ig~~vvIGdnv~Ig~ga~I~g~l-~g~~~~~Vv 292 (387)
T 2rij_A 217 NTRILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGA-CMVEG--RISSSAIVGEGSDVGGGASILGVL-SGTSGNAIS 292 (387)
T ss_dssp TCEESCGGGBBTTCBCCTTCEECSSSCEECTTCEESSC-CEECS--EECTTCEECTTCEECTTCEECCBC-SSTTCCBCE
T ss_pred CEEEcCCCEECCCeEEcCCCEEeCCeeEECCCcEEECC-EEEee--EECCCCEECCCCEECCCceEccee-cCCCccCeE
Confidence 4444444444444455555555543 4443 233 455 55542 444 46677777777777654311 111222378
Q ss_pred ECCCCEECCCcE----E-cceEEcCCcEEcccCCC
Q 015259 377 LGEAVGVEDEVV----V-TNSIVLPNKTLNVSVHQ 406 (410)
Q Consensus 377 i~~~~~i~~~~~----v-~~~~v~~~~~v~~~~~~ 406 (410)
||++|+||++++ | .+|+|++|++|.++++.
T Consensus 293 IGdnv~IGagAv~GV~IGdgavIGAGsVVt~dv~i 327 (387)
T 2rij_A 293 VGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKF 327 (387)
T ss_dssp ECTTCEECTTCEECSCBCTTCEECTTCEECTTCEE
T ss_pred EeCCCEECCCCcCCcEECCCCEECCCCEECCCcee
Confidence 999999999876 3 57778888888877764
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=94.62 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=37.1
Q ss_pred eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 347 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 347 ~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+++||++|+||.+|.|.++ +.||++|+||++++|.+. |.+++++..
T Consensus 111 ~v~IG~~v~IG~~a~I~~g---------v~IG~~~iIgagsvV~~d-Vp~~~vv~G 156 (212)
T 3eev_A 111 DTIIGHDVWIGTEAMIMPG---------VKIGHGAIIASRSVVTKD-VAPYEVVGS 156 (212)
T ss_dssp CEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEEET
T ss_pred CeEECCCCEECCCCEEcCC---------CEECCCCEECCCCEEccc-cCCCcEEEe
Confidence 6789999999999999887 899999999999999644 466666544
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-09 Score=93.30 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=33.4
Q ss_pred eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 347 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 347 ~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+++|+++|.||.++.|.++ +.||+++.|+++++|.+. |.+++++..
T Consensus 113 ~v~Ig~~v~IG~~a~I~~g---------v~Ig~~~~Igags~V~~~-v~~~~i~~G 158 (209)
T 1mr7_A 113 DTIIGNDVWIGKDVVIMPG---------VKIGDGAIVAANSVVVKD-IAPYMLAGG 158 (209)
T ss_dssp CEEECSSCEECTTCEECTT---------CEECTTCEECTTCEECSC-BCTTEEEEE
T ss_pred CcEECCCCEEcCCCEEcCC---------CEECCCCEEcCCCEEcCC-CCCCeEEEe
Confidence 5778888888888888776 788888888888887544 455555543
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.2e-09 Score=91.40 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=23.0
Q ss_pred eEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||.++.|.++++| .+++|++|++|..++++..+
T Consensus 120 v~IG~~a~I~~gv~Ig~~~~Igags~V~~~v~~~~i 155 (209)
T 1mr7_A 120 VWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYML 155 (209)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred CEEcCCCEEcCCCEECCCCEEcCCCEEcCCCCCCeE
Confidence 344444444444444 57888899999999988754
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=88.29 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=57.8
Q ss_pred CCcEECCCcEECCCCEEe--ee--EECC---------------CCEECCCCEEE-eeEECCCCEECCCcEEccCCCCCcc
Q 015259 312 PNVSISANARIGAGVRLI--SC--IILD---------------GVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAK 371 (410)
Q Consensus 312 ~~~~ig~~~~i~~~~~i~--~~--~i~~---------------~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~ 371 (410)
+.+.||++|.|+++|.|. +. ...+ .+.+++++.+. .++|+++|+||.+|.|.++
T Consensus 55 ~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~~~i~~~~~~~~~v~IG~~v~IG~~a~I~~g------ 128 (212)
T 1xat_A 55 DKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPG------ 128 (212)
T ss_dssp CCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTT------
T ss_pred cCEEEcCCCEECCCCEEEeCCCCccccccccccceeeecccccccccccCceecCCeEECCCCEECCCCEEeCC------
Confidence 467888888888888873 11 1111 12334455555 5899999999999999988
Q ss_pred eeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 372 LGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 372 ~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+.||++|.||++++|.+. |.+++++..
T Consensus 129 ---v~Ig~~~~IgagsvV~~~-vp~~~~~~G 155 (212)
T 1xat_A 129 ---VRVGHGAIIGSRALVTGD-VEPYAIVGG 155 (212)
T ss_dssp ---CEECTTCEECTTCEECSC-BCTTEEEET
T ss_pred ---CEECCCCEECCCCEEccc-CCCCcEEEc
Confidence 899999999999999654 566666543
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-08 Score=89.65 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=25.8
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
++||++|+||.+++| .+++|+++++|..++++..+
T Consensus 119 v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv~~~~~ 160 (219)
T 4e8l_A 119 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSI 160 (219)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred cEECCCeEECCCCEEcCCCEECCCCEECCCCEEcccCCCCeE
Confidence 566666666665555 57888999999999988754
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-08 Score=88.25 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=24.2
Q ss_pred eEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
|.||.+|.|.++++| .+|+|++|++|..++++..+
T Consensus 118 v~IG~~a~I~~gv~IG~~~iIgagsvV~~dVp~~~v 153 (212)
T 3eev_A 118 VWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPYEV 153 (212)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEEccccCCCcE
Confidence 555555555555555 57788888888888887654
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=7.9e-08 Score=83.92 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=24.1
Q ss_pred eEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||.+|.|.++++| .+|+|++|++|..++++..+
T Consensus 117 v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~vp~~~~ 152 (212)
T 1xat_A 117 VWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAI 152 (212)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEcccCCCCcE
Confidence 444444444445555 68889999999999988754
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-05 Score=77.88 Aligned_cols=183 Identities=16% Similarity=0.169 Sum_probs=111.3
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccC-CccchhhhHhhccc-----------EEEecccchHHHHHHHHhhc
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR-----------IYLVGFYEEREFALYVSSIS 73 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~-g~pli~~~l~~l~~-----------i~vv~~~~~~~i~~~~~~~~ 73 (410)
..++.+|+|||| .|+||+- ..||.++|+. |+++++..++.+.. ++.......+...+++++.
T Consensus 125 l~kvavvlLaGG--lGTRLG~---~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~- 198 (528)
T 3r3i_A 125 LNKLVVVKLNGG--LGTSMGC---KGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKY- 198 (528)
T ss_dssp CTTEEEEEECCC--BCTTTTC---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGG-
T ss_pred cCceEEEEeCCC--CccccCC---CCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhc-
Confidence 457899999999 9999976 7899999997 88999999988875 3344445556777777763
Q ss_pred ccCCccEEEeeC---------------------------CCCCCcHHHHHH-----hHHHhcccCCCcEEEEcCCcccCC
Q 015259 74 NELRIPVRYLRE---------------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCCSF 121 (410)
Q Consensus 74 ~~~~~~i~~i~~---------------------------~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~i~~~ 121 (410)
..++.++.+..| ..+.|.++-... .++.+.+..-+++.+...|.+...
T Consensus 199 ~~fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~ 278 (528)
T 3r3i_A 199 NHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGAT 278 (528)
T ss_dssp TTSSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCC
T ss_pred CccCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccc
Confidence 334444443321 123455442222 234444444678899999998532
Q ss_pred ChHHHHHHHHhc----CCceEEEEEecCcccccc-cceEEEcCCCCcEEEEecCCCC--------ccccceeeeEEEEcH
Q 015259 122 PLPEMLDAHRNY----GGMGTILVIKVSAESASQ-FGELVADPDTNELLHYTEKPET--------FVSDLINCGVYVFTP 188 (410)
Q Consensus 122 ~l~~~l~~~~~~----~~~~~l~~~~~~~~~~~~-~~~v~~d~~~~~v~~i~ekp~~--------~~~~l~~~Giy~~~~ 188 (410)
--..+|..+... ++++.+-+.+. ..+.. -|.+..-...-+++++.+-|.+ ....+.++...+|+-
T Consensus 279 vDp~~Lg~~~~~~~~~~~d~~~kVv~K--t~~dek~Gvl~~~dGk~~vvEyseip~e~~~~~~g~~~f~~~Ntnnlw~~L 356 (528)
T 3r3i_A 279 VDLYILNHLMNPPNGKRCEFVMEVTNK--TRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISL 356 (528)
T ss_dssp CCHHHHHHHSSCSSSCCCSEEEEECCC--CTTCCSSCEEECSSSSCEEECTTSSCGGGTTTSSCSSSCCCCEEEEEEEEH
T ss_pred cCHHHHHHHHhcccccCCcEEEEEeEc--cccCCcccEEEEECCeEEEEEecCCChhHhhccCCcccCCeEEEEEEEEEH
Confidence 233466666655 66766554433 22322 3444332012245555544321 234456888899998
Q ss_pred HHHHHhhh
Q 015259 189 DIFNAIQG 196 (410)
Q Consensus 189 ~~~~~l~~ 196 (410)
+.++.+.+
T Consensus 357 ~~L~~v~~ 364 (528)
T 3r3i_A 357 AAVKRLQE 364 (528)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87755443
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0019 Score=62.36 Aligned_cols=182 Identities=16% Similarity=0.124 Sum_probs=109.7
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCcccccc-CCccchhhhHhhccc----------EEEe-cccchHHHHHHHHhhcc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL-GGQPMVHHPISACKR----------IYLV-GFYEEREFALYVSSISN 74 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi-~g~pli~~~l~~l~~----------i~vv-~~~~~~~i~~~~~~~~~ 74 (410)
+++.+|.|||| .|+||+- ..||.++|+ .|+++++..++.+.. .+|- ....++...+++++. .
T Consensus 75 ~kvavvlLaGG--lGTRLG~---~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~-~ 148 (484)
T 3gue_A 75 RQAVVLKLNGG--LGTGMGL---NGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKY-P 148 (484)
T ss_dssp TTEEEEEEECC--CCGGGTC---SSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGC-H
T ss_pred hhcEEEEEcCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhC-c
Confidence 47889999999 9999976 779999999 778999999888775 3444 444556777887763 2
Q ss_pred cCCc---cEEEeeC-----------------------CCCCCcHHHHHH-----hHHHhcccCCCcEEEEcCCcccCCCh
Q 015259 75 ELRI---PVRYLRE-----------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCCSFPL 123 (410)
Q Consensus 75 ~~~~---~i~~i~~-----------------------~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~i~~~~l 123 (410)
.++. .+.+..| ..+.|.++-... .++.+.+..-+++.+.+.|.+...--
T Consensus 149 ~Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~D 228 (484)
T 3gue_A 149 TLYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLD 228 (484)
T ss_dssp HHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCC
T ss_pred ccCCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccC
Confidence 2221 1221111 113455543322 23444444467889999999754333
Q ss_pred HHHHHHHHhcCCceEEEEEecCccccc-ccceEEEc--------CCCC--cEEEEecCCCC--------ccccceeeeEE
Q 015259 124 PEMLDAHRNYGGMGTILVIKVSAESAS-QFGELVAD--------PDTN--ELLHYTEKPET--------FVSDLINCGVY 184 (410)
Q Consensus 124 ~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~~d--------~~~~--~v~~i~ekp~~--------~~~~l~~~Giy 184 (410)
..++..+..+++++.+-+.+. ..+. .-|.+... ..++ +++++.+-|.+ ....+.+++-.
T Consensus 229 p~~lG~~~~~~~d~~~kvv~K--t~~dekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~f~~~~g~~~FNtnNi 306 (484)
T 3gue_A 229 VRLLDYMHEKQLGFLMEVCRR--TESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSFQNIAKHCFFNTNNI 306 (484)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC--CTTCCSSEEEEEEC--------CCCEEEEEEGGGSCGGGHHHHTCTTTSCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEEEEC--CCCCCceeEEEEEccccccccCCCCCEEEEEeccCCHHHHhhhcCCCCceEeEeeeE
Confidence 567777888888877776654 2222 23433221 1134 35555554431 12335578888
Q ss_pred EEcHHHH-HHhhh
Q 015259 185 VFTPDIF-NAIQG 196 (410)
Q Consensus 185 ~~~~~~~-~~l~~ 196 (410)
+++-..+ +.++.
T Consensus 307 ~~~l~~l~~~l~~ 319 (484)
T 3gue_A 307 WINLMELKKMMDE 319 (484)
T ss_dssp EEEHHHHHHHHHH
T ss_pred EEEHHHHHHHHHh
Confidence 8887665 44443
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0044 Score=61.53 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=85.9
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccC---CccchhhhHhhccc-------EE-EecccchHHHHHHHHhhccc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR-------IY-LVGFYEEREFALYVSSISNE 75 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~---g~pli~~~l~~l~~-------i~-vv~~~~~~~i~~~~~~~~~~ 75 (410)
.++.+|+|||| .|+||+- ..||.++|++ +++++++.++.+.+ .+ ......++...+++++
T Consensus 113 ~kvavvllaGG--lGTRLG~---~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~---- 183 (630)
T 3ogz_A 113 CKTVFVLVAGG--LGERLGY---SSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE---- 183 (630)
T ss_dssp GGEEEEEECCC--EEGGGTE---EEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH----
T ss_pred hhceEEEecCC--cccccCC---CCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH----
Confidence 47889999999 9999986 7799999997 99999999999876 34 4444556778888876
Q ss_pred CCc---cEEEeeCC----------------------CCCCcHHHHHH-----------------------hHHHhcccCC
Q 015259 76 LRI---PVRYLRED----------------------KPHGSAGALYN-----------------------FRDLIMEDNP 107 (410)
Q Consensus 76 ~~~---~i~~i~~~----------------------~~~g~~~~l~~-----------------------~~~~l~~~~~ 107 (410)
|+. ++.+..|. .+.|.++-... .++.+.+..-
T Consensus 184 fgl~~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gi 263 (630)
T 3ogz_A 184 LQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGY 263 (630)
T ss_dssp TTCCCTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTC
T ss_pred hCCCcccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCC
Confidence 332 33332110 13455543222 2444443445
Q ss_pred CcEEEEcCCccc-CCChHHHHHHHHhcCCceEEEEEec
Q 015259 108 SHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKV 144 (410)
Q Consensus 108 ~~~lvl~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~ 144 (410)
+++.+...|.+. ...-..+|-.+.++++++.+-+.+.
T Consensus 264 eyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r 301 (630)
T 3ogz_A 264 ESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPR 301 (630)
T ss_dssp CEEEEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred EEEEEEccCCccccccCHHHhHHHHhcCCCEEEEEEEC
Confidence 788888889853 2223446677777888877666553
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0027 Score=55.05 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=67.1
Q ss_pred ceEEEEEe--cCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----E-EEecccchHHHHHHHHhhcccCCcc
Q 015259 8 KVVAVIMV--GGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----I-YLVGFYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 8 ~~~aiIla--aG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i-~vv~~~~~~~i~~~~~~~~~~~~~~ 79 (410)
.|.+||++ +. .-|||.+ ...+......++||++|+++.+.. + ++++.... .. ..+ .
T Consensus 3 ~~~~vip~k~g~--~KtRL~~---~l~~~~~~~l~~~ll~~vl~~l~~~~~~~v~vvv~~~~~--~~-------~~~--~ 66 (211)
T 2i5e_A 3 AMRAVIPYKKAG--AKSRLSP---VLSLQEREEFVELMLNQVISSLKGAGIEQVDILSPSVYG--LE-------EMT--E 66 (211)
T ss_dssp CCEEEEECCCTT--TTGGGTT---TSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTT--CS-------SCC--S
T ss_pred ceEEEEEeCCCC--CccccCc---cCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEcCcHH--HH-------hhc--C
Confidence 58899999 77 7888865 233333446789999999999876 6 66665432 11 112 3
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHH
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLD 128 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~ 128 (410)
+.++.+. .|.++++..+.+.+. +.++++.||++. ...+..+++
T Consensus 67 ~~~v~~~--~gl~~sl~~a~~~~~----~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 67 ARVLLDE--KDLNEALNRYLKEAE----EPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp SEEEECC--SCHHHHHHHHHHHCC----SCEEEECSCCTTCCHHHHHHHTT
T ss_pred CEEEECC--CCHHHHHHHHHHhcC----CCEEEEcCCcCCCCHHHHHHHHc
Confidence 4555544 678889988877662 689999999985 233566554
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=1.7 Score=37.70 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=57.8
Q ss_pred cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCC--------CCCCcHHHHHHhHHHhcccC
Q 015259 42 PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLRED--------KPHGSAGALYNFRDLIMEDN 106 (410)
Q Consensus 42 pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~--------~~~g~~~~l~~~~~~l~~~~ 106 (410)
..|..+|+.+.+ ++|+-....+...+.+++... ..++.++... ...|.+.+...+.+...
T Consensus 14 ~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~--~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~--- 88 (255)
T 1qg8_A 14 DYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN--DNRVRFYQSDISGVKERTEKTRYAALINQAIEMAE--- 88 (255)
T ss_dssp TTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG--STTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh--cCCEEEEecccccccccccccCHHHHHHHHHHHcC---
Confidence 456666666643 566643334444555655422 3467877766 56788888877777664
Q ss_pred CCcEEEEcCCcccCCC-hHHHHHHHHhc
Q 015259 107 PSHIFLLNCDVCCSFP-LPEMLDAHRNY 133 (410)
Q Consensus 107 ~~~~lvl~~D~i~~~~-l~~~l~~~~~~ 133 (410)
.+.++++.+|.+...+ +..+++...+.
T Consensus 89 g~~i~~lD~Dd~~~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 89 GEYITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp CSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCccChHHHHHHHHHHHhC
Confidence 4788899999887655 88888877654
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=88.38 E-value=1.5 Score=37.71 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=40.7
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCceE
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGT 138 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~~ 138 (410)
++.++. .+..|.+.+.-.+.+... .+.++++.+|.+...+ |..+++...+.+.+++
T Consensus 61 ~i~~i~-~~n~G~~~a~N~g~~~a~---g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v 117 (240)
T 3bcv_A 61 NIKVIH-KKNAGLGMACNSGLDVAT---GEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAV 117 (240)
T ss_dssp SEEEEE-CCCCCHHHHHHHHHHHCC---SSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEE
T ss_pred CEEEEE-CCCCChHHHHHHHHHHcC---CCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEE
Confidence 467665 356788888888877765 4788899999887655 7888887766455543
|
| >1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 | Back alignment and structure |
|---|
Probab=85.68 E-value=3 Score=40.26 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=61.1
Q ss_pred cccCCc--cchhhhHhhccc---------EEEecccchH-HHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhc
Q 015259 36 FPLGGQ--PMVHHPISACKR---------IYLVGFYEER-EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103 (410)
Q Consensus 36 lpi~g~--pli~~~l~~l~~---------i~vv~~~~~~-~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~ 103 (410)
+|.-|. ..|..+|+.+.+ |+||-....+ ...+.+++...+++.++.++......|-+.+...+.+...
T Consensus 35 Ip~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~ 114 (472)
T 1xhb_A 35 IVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSR 114 (472)
T ss_dssp EEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhcc
Confidence 444454 366666666543 5555222111 1222333322233436888877777888888888887765
Q ss_pred ccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCce
Q 015259 104 EDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMG 137 (410)
Q Consensus 104 ~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~ 137 (410)
.+.++++.+|.....+ |..+++...+....+
T Consensus 115 ---gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~ 146 (472)
T 1xhb_A 115 ---GQVITFLDAHCECTAGWLEPLLARIKHDRRTV 146 (472)
T ss_dssp ---SSEEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred ---CCeEEEECCCeEeCccHHHHHHHHHHhCCCEE
Confidence 4788899999887555 888888877655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 410 | ||||
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 6e-36 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 2e-34 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 1e-31 | |
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 1e-22 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 8e-18 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 2e-13 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 3e-13 | |
| d1fxja1 | 78 | b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha | 5e-11 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 2e-10 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 1e-09 | |
| d1vgwa_ | 226 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 2e-09 | |
| d2jf2a1 | 262 | b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra | 5e-09 | |
| d2jf2a1 | 262 | b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra | 1e-06 | |
| d1j2za_ | 259 | b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer | 6e-09 | |
| d1j2za_ | 259 | b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer | 1e-08 | |
| d1j2za_ | 259 | b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer | 3e-07 | |
| d1j2za_ | 259 | b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer | 2e-05 | |
| d2f9ca1 | 320 | b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm | 4e-08 | |
| d2f9ca1 | 320 | b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm | 5e-08 | |
| d2f9ca1 | 320 | b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm | 2e-06 | |
| d2f9ca1 | 320 | b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm | 0.001 | |
| d1i52a_ | 225 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 4e-07 | |
| d2dpwa1 | 231 | c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 | 4e-07 | |
| d1vpaa_ | 221 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 7e-07 | |
| d1w77a1 | 226 | c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl- | 7e-07 | |
| d1g97a1 | 196 | b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha | 3e-05 | |
| d1g97a1 | 196 | b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha | 0.003 | |
| d1w55a1 | 205 | c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, | 8e-05 | |
| d1mr7a_ | 203 | b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero | 1e-04 | |
| d1qrea_ | 210 | b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M | 3e-04 | |
| d1qrea_ | 210 | b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M | 0.001 | |
| d1qrea_ | 210 | b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M | 0.002 | |
| d1v3wa_ | 173 | b.81.1.5 (A:) Ferripyochelin binding protein {Arch | 0.001 | |
| d1eyra_ | 225 | c.68.1.13 (A:) CMP acylneuraminate synthetase {Nei | 0.002 | |
| d1qwja_ | 228 | c.68.1.13 (A:) CMP acylneuraminate synthetase {Mou | 0.004 | |
| d1e5ka_ | 188 | c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro | 0.004 | |
| d1xhda_ | 172 | b.81.1.5 (A:) Putative acetyltransferase/acyltrans | 0.004 |
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 131 bits (331), Expect = 6e-36
Identities = 38/201 (18%), Positives = 78/201 (38%), Gaps = 13/201 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC-----KRIYLVGFYEEREF 65
+I+ GG GTR P +L I K L P+ +PM+++P+S + I ++ ++
Sbjct: 4 GIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 61
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ + + ++Y + P G A A N +L ++ E
Sbjct: 62 FQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGES--FIGNDLSALVLGDNLYYGHDFHE 119
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+L + ++ V ++G + D + + EKP S+ G+Y
Sbjct: 120 LLGSASQRQTGASVFAYHVL--DPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYF 176
Query: 186 FTPDIFNAIQGVS-SQRKDRE 205
+ + + + + S R + E
Sbjct: 177 YDQQVVDIARDLKPSPRGELE 197
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 127 bits (320), Expect = 2e-34
Identities = 40/201 (19%), Positives = 80/201 (39%), Gaps = 13/201 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC-----KRIYLVGFYEEREF 65
+I+ GG GTR P++ + K L P+ +PM+++P+S + I ++ E++ +
Sbjct: 4 GIILAGG--SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 61
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ +E I + Y + P G A A + + +L ++
Sbjct: 62 FQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPS--CLVLGDNIFFGQGFSP 119
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
L T+ +V +FG + D + + EKP+ S+ G+Y
Sbjct: 120 KLRHVAARTEGATVFGYQV--MDPERFGVVEFDDN-FRAISLEEKPKQPKSNWAVTGLYF 176
Query: 186 FTPDIFNAIQGVS-SQRKDRE 205
+ + + V S+R + E
Sbjct: 177 YDSKVVEYAKQVKPSERGELE 197
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 120 bits (301), Expect = 1e-31
Identities = 39/201 (19%), Positives = 80/201 (39%), Gaps = 13/201 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC-----KRIYLVGFYEEREF 65
+++ GG GTR P++ + K L P+ +PM+++P+S + I ++ +
Sbjct: 6 GIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + Y +++P G A A +D I + +L +V E
Sbjct: 64 YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGDSKV--ALVLGDNVFYGHRFSE 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+L + I V FG + D + ++ EKP S+ + G+Y
Sbjct: 122 ILRRAASLEDGAVIFGYYV--RDPRPFGVVEFDSE-GRVISIEEKPSRPKSNYVVPGLYF 178
Query: 186 FTPDIFNAIQGVS-SQRKDRE 205
+ + + + S R + E
Sbjct: 179 YDNQVVEIARRIEPSDRGELE 199
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 95.1 bits (235), Expect = 1e-22
Identities = 51/292 (17%), Positives = 96/292 (32%), Gaps = 67/292 (22%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYE 61
V+ +I+ GG GTR PL+ KP PLG ++ P+S C +IY++ +
Sbjct: 11 SVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 68
Query: 62 EREFALYVSSISNELRIPVRYLR-------------EDKPHGSAGALYNFRDLIMEDNPS 108
++S + D G+A A+ + L E
Sbjct: 69 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVL 128
Query: 109 HIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYT 168
+L D + + AHR T+ + + + A+ FG + D + ++ +
Sbjct: 129 EYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKID-EEGRIIEFA 187
Query: 169 EKPET---------------------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENL 207
EKP+ + + + G+YV + D+ + R+
Sbjct: 188 EKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNL--------LRDKF 239
Query: 208 RRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTP 259
+ F + I + ++ Y +WE I T
Sbjct: 240 PGANDFG----------------SEVIPGATSLGMRVQAYLYDGYWEDIGTI 275
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 80.5 bits (197), Expect = 8e-18
Identities = 44/274 (16%), Positives = 83/274 (30%), Gaps = 65/274 (23%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACK-----RIYLVGFYEER-- 63
AVI+ GG GTR ++ PKP+ +GG+P++ H + + Y+
Sbjct: 5 AVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62
Query: 64 ------------------EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMED 105
V + + G L + + +D
Sbjct: 63 KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD 122
Query: 106 NPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165
D + +D H+ +G T+ +FG A +
Sbjct: 123 EA--FLFTYGDGVADLDIKATIDFHKAHGKKATLTAT----FPPGRFG---ALDIQAGQV 173
Query: 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225
++ +IN G +V P + + I + +++E
Sbjct: 174 RSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDA------------TTWE----------- 210
Query: 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTP 259
Q+ L LA + +L +E FW+ + T
Sbjct: 211 ------QEPLMTLAQQGELMAFEHPGFWQPMDTL 238
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 67.0 bits (162), Expect = 2e-13
Identities = 26/189 (13%), Positives = 53/189 (28%), Gaps = 18/189 (9%)
Query: 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREF 65
+ +V A+I+ G GTR RPL+ N PK L + +P++ + I K G +
Sbjct: 1 EIRVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK---GINDIIII 55
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
Y+ + L+ + + + ++
Sbjct: 56 VGYLKEQFDYLKEKYGVRLVFNDKYA----DYNNFYSLYLVKEELANSYVIDADNYLFKN 111
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
M ++ + E + + + + I GV
Sbjct: 112 MFRNDLTRSTYFSVYREDCTNEWFLVY---------GDDYKVQDIIVDSKAGRILSGVSF 162
Query: 186 FTPDIFNAI 194
+ I
Sbjct: 163 WDAPTAEKI 171
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 67.0 bits (162), Expect = 3e-13
Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 13/186 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFALYVS 70
A+I+ G KGTR + ++PK L + G M+ H + I +
Sbjct: 4 AIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELV 58
Query: 71 SISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDA 129
++ + + G+ A+ ++ + + + + L ++D
Sbjct: 59 EEVL--AGQTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDF 116
Query: 130 HRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFV---SDLINCGVYVF 186
H N+ + TIL + +G +V + + L +K T IN G YVF
Sbjct: 117 HINHKNVATILTAETDNP--FGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVF 174
Query: 187 TPDIFN 192
+
Sbjct: 175 DNERLF 180
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 56.0 bits (135), Expect = 5e-11
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIV 350
+ G + +I I NV++ +IG G + + +I D EI VV +A +
Sbjct: 10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANL 69
Query: 351 GWKSSIG 357
+IG
Sbjct: 70 AAACTIG 76
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 58.6 bits (140), Expect = 2e-10
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 6/123 (4%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFALYVS 70
VI+ G KGTR ++PK L L G+ MV H I A + + +
Sbjct: 5 VVILAAG--KGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 59
Query: 71 SISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAH 130
+ + + ++ + + G+ A+ +D + + + L + DA
Sbjct: 60 KQALK-DDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAK 118
Query: 131 RNY 133
Sbjct: 119 PQG 121
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 56.6 bits (135), Expect = 1e-09
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 5/128 (3%)
Query: 8 KVVAVIMVGGPTKGTRFRPLS-LNIPKPLFPL-GGQPMVHHPISACKRIYLVGFYEEREF 65
K A++M GG +G R PLS + PKP PL G+ ++ + +
Sbjct: 2 KTYALVMAGG--RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVR 59
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ L +AGA+ +++ + +L D
Sbjct: 60 RDQEAVARPYADGIRLLLEP-LGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAY 118
Query: 126 MLDAHRNY 133
Sbjct: 119 REALATML 126
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Score = 55.0 bits (131), Expect = 2e-09
Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 12/179 (6%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISA------CKRIYLVGFYE 61
K +A+I G G RF + PK +G + ++ H + +V E
Sbjct: 3 KNIALIPAAG--IGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPE 57
Query: 62 EREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF 121
+ ++ + + A L E + + S
Sbjct: 58 DTFADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSE 117
Query: 122 PLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLIN 180
L +++ N G + V ++ G++ A D L + P+ F + L++
Sbjct: 118 ALARLIEQAGNAAEGGILAVPVADTLKRAESGQISATVD-RSGLWQAQTPQLFQAGLLH 175
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Score = 54.5 bits (130), Expect = 5e-09
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 292 IIG-DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVVTNAI 349
+I +VHP+A + A IG N I +G V + ++ V + + +
Sbjct: 1 MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDN 60
Query: 350 VGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIV 394
++ + V + + + +G+ + + V + V
Sbjct: 61 EIYQFASIGE--VNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTV 103
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Score = 47.6 bits (112), Expect = 1e-06
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIM 340
K+A + V A I A IGP + + IG G L S ++++G +
Sbjct: 4 KSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKI 56
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Score = 54.3 bits (129), Expect = 6e-09
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVVTNAIVGWKSSI 356
+ +A I P A+I V I IG GV+L + + V + + V + ++
Sbjct: 3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAV 62
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Score = 53.1 bits (126), Expect = 1e-08
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 302 AKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV-TNAIVGWKSSIGRW 359
+KI TA I P I+ IG C+I DGV++ E + N + + +G+
Sbjct: 1 SKIAKTAIISPKAEINKGVEIGEF-----CVIGDGVKLDEGVKLHNNVTLQGHTFVGKN 54
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Score = 48.9 bits (115), Expect = 3e-07
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVVT-NAIVGWK 353
+ P A+I+ +IG I ++ GV+L + + + +N + A++G +
Sbjct: 7 AIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQ 66
Query: 354 SSIGRW 359
++
Sbjct: 67 PQDLKY 72
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Score = 43.5 bits (101), Expect = 2e-05
Identities = 13/82 (15%), Positives = 23/82 (28%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTN 347
K A I ++ +I IG V + ++ V L + + V
Sbjct: 5 KTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLG 64
Query: 348 AIVGWKSSIGRWSRVQAEGDFN 369
G +S + D
Sbjct: 65 TQPQDLKYKGEYSELIIGEDNL 86
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Score = 52.1 bits (124), Expect = 4e-08
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 287 TKNATIIGDVYV-HPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV 345
+ GD ++ +A +I N I+ + VR+ + +D +I + A +
Sbjct: 48 DNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARI 107
Query: 346 TNAIVGWKSSIGRWSRV 362
++ + SS+ +
Sbjct: 108 SDNVTIQSSSVREECAI 124
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Score = 52.1 bits (124), Expect = 5e-08
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 289 NATIIGD-VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTN 347
+ I + +I A+I ++ N RIG V + I DG I +N + +
Sbjct: 56 DCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQS 115
Query: 348 AIVGWKSSIGRWSRV 362
+ V + +I +RV
Sbjct: 116 SSVREECAIYGDARV 130
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Score = 47.1 bits (111), Expect = 2e-06
Identities = 15/75 (20%), Positives = 26/75 (34%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTN 347
+NA + +A+I + NV I N I I D V I ++V
Sbjct: 62 ENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREE 121
Query: 348 AIVGWKSSIGRWSRV 362
+ + + S +
Sbjct: 122 CAIYGDARVLNQSEI 136
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Score = 38.3 bits (88), Expect = 0.001
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGP-----NVSISANARIGAGVRL-ISCIILDGVEIME 341
I G+ + ++ +IG IS ARI V + S + + +
Sbjct: 68 AGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGD 127
Query: 342 NAVVTNAIVGWKSSIGR 358
V+ + + +
Sbjct: 128 ARVLNQSEILAIQGLTH 144
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Score = 48.5 bits (114), Expect = 4e-07
Identities = 20/129 (15%), Positives = 30/129 (23%), Gaps = 6/129 (4%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFAL 67
V AV+ G G R + PK +G Q ++ H + A V
Sbjct: 3 DVCAVVPAAG--FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPG 57
Query: 68 YVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEML 127
L + D A ++ D + C L
Sbjct: 58 DSRFAQLPLANHPQITVVDGGDERADSVLAGLK-AAGDAQWVLVHDAARPCLHQDDLARL 116
Query: 128 DAHRNYGGM 136
A
Sbjct: 117 LALSETSRT 125
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Score = 48.3 bits (114), Expect = 4e-07
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR 53
+ A+++ GG K + K L P G+PMV + A
Sbjct: 2 RPSAIVLAGG--KEAWAERFGV-GSKALVPYRGRPMVEWVLEALYA 44
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Score = 47.7 bits (112), Expect = 7e-07
Identities = 14/110 (12%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFALYV 69
VA+++ G KG R N+PK + G+ + +P+S + + +
Sbjct: 5 VAILLAAG--KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF 59
Query: 70 SSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC 119
+ + + + ++ + + + + +PS++ + +
Sbjct: 60 EVVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPF 109
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 47.7 bits (112), Expect = 7e-07
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIY 55
V +++ GG +G R + ++PK PL GQP+ + R+
Sbjct: 4 SVSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMP 46
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 42.4 bits (98), Expect = 3e-05
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMEN 342
Y+ +I +I NV++ +IGA L + + I
Sbjct: 9 TYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAG 55
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 36.2 bits (82), Expect = 0.003
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 298 VHP-SAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSI 356
V+P + I +I V I AN + + I + V ++ +G + I
Sbjct: 4 VNPEATYIDIDVEIASEVQIEANVTLKGQTK-----IGAETVLTNGTYVVDSTIGAGAVI 58
Query: 357 GRWSRVQAEGDFN 369
++
Sbjct: 59 TNSMIEESSVADG 71
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Score = 41.1 bits (95), Expect = 8e-05
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIY 55
+ +++ G TRF + K LG P+ + Y
Sbjct: 2 MSLIMLAAG--NSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFY 43
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 3/80 (3%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIG 357
++P I P + N +G S +G + + I+ K IG
Sbjct: 8 MYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSK---NGETFDKQILYHYPILNDKLKIG 64
Query: 358 RWSRVQAEGDFNAKLGITIL 377
++ + +
Sbjct: 65 KFCSIGPGVTIIMNGANHRM 84
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Score = 39.6 bits (91), Expect = 3e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGV 326
+ P+A I P A + V+I AN +
Sbjct: 25 IDPTAYIDPQASVIGEVTIGANVMVSPMA 53
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Score = 37.7 bits (86), Expect = 0.001
Identities = 13/79 (16%), Positives = 25/79 (31%)
Query: 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTN 347
I Y+ P A + IG NV +S A I + + + +
Sbjct: 21 SAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHAL 80
Query: 348 AIVGWKSSIGRWSRVQAEG 366
+ + + V+ +G
Sbjct: 81 ETINEEGEPIEDNIVEVDG 99
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Score = 37.3 bits (85), Expect = 0.002
Identities = 19/85 (22%), Positives = 30/85 (35%)
Query: 299 HPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGR 358
+ I PTA I P S+ IGA V + + E M V + V +
Sbjct: 20 PSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHA 79
Query: 359 WSRVQAEGDFNAKLGITILGEAVGV 383
+ EG+ + + G+ V
Sbjct: 80 LETINEEGEPIEDNIVEVDGKEYAV 104
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.3 bits (85), Expect = 0.001
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISC 331
+HPSA + A + +V + + L
Sbjct: 11 PRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGD 46
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Score = 37.4 bits (85), Expect = 0.002
Identities = 14/130 (10%), Positives = 36/130 (27%), Gaps = 10/130 (7%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIP-KPLFPLGGQPMVHHPISACKRIYLVGFYEEREFA 66
+ +AVI+ +KG +P K L + G ++ H I+A
Sbjct: 4 QNIAVILARQNSKG---------LPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG 54
Query: 67 LYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEM 126
++ + + V + +A ++ + + +
Sbjct: 55 GLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAH 114
Query: 127 LDAHRNYGGM 136
+ +
Sbjct: 115 IREAFSLFDE 124
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.2 bits (82), Expect = 0.004
Identities = 20/192 (10%), Positives = 44/192 (22%), Gaps = 16/192 (8%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIP-KPLFPLGGQPMVHHPISACKRI----YLVGFYEE 62
+ A+++ G +KG IP K + L G P++ + A + +
Sbjct: 3 HLAALVLARGGSKG---------IPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH 53
Query: 63 REFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDN--PSHIFLLNCDVCCS 120
E ++ +D + D
Sbjct: 54 DEIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDL 113
Query: 121 FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLIN 180
+ EM+ + + + V +P + + N
Sbjct: 114 QKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGELYEN 173
Query: 181 CGVYVFTPDIFN 192
Y +
Sbjct: 174 GSFYFAKRHLIE 185
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Score = 35.8 bits (81), Expect = 0.004
Identities = 14/107 (13%), Positives = 25/107 (23%), Gaps = 6/107 (5%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFAL 67
+ V++ GG K R + K L L G+P+ H A
Sbjct: 3 TITGVVLAGG--KARRMG----GVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQE 56
Query: 68 YVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114
+ ++ G + P +
Sbjct: 57 IYQASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIP 103
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} Length = 172 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Score = 35.7 bits (81), Expect = 0.004
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISC 331
NA I Y KI +A I V+I+ + +G +
Sbjct: 2 NAMIYP--YKEKKPKIASSAFIADYVTITGDVYVGEESSIWFN 42
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 410 | |||
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.95 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.95 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.94 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.9 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.87 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.6 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.58 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.58 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.57 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.57 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.56 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.56 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.55 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.54 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.52 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.47 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.44 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.44 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.43 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.42 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 99.41 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 99.39 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 99.38 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.35 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 99.34 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.34 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.31 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.3 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.3 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.28 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.27 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.27 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 99.26 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 99.24 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 99.22 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.22 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 99.17 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.15 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 99.15 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.13 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 99.1 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.03 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 99.03 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 99.02 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.98 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 98.95 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.84 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.83 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 98.81 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.68 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 98.49 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.32 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 97.75 | |
| d1xhba2 | 328 | Polypeptide N-acetylgalactosaminyltransferase 1, N | 84.14 |
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=4.3e-39 Score=294.43 Aligned_cols=232 Identities=19% Similarity=0.290 Sum_probs=200.2
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EE-EecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IY-LVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~-vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
+++||||||| .||||+|+|..+||||+||+|+|||+|+|+.|.. |+ |+.+++.+.++++++.. ++++.++.
T Consensus 1 k~KavILAgG--~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~~-~~~g~~I~ 77 (292)
T d1fxoa_ 1 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDG-SNWGLDLQ 77 (292)
T ss_dssp CEEEEEECCC--CCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTCEEE
T ss_pred CcEEEEECCC--CCCcCChhhcCCCcccCEECCEehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhccc-cccCeEEE
Confidence 4799999999 9999999999999999999999999999999887 54 55667778899988874 67888999
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
++.|.++.|++++++.+.+++.. ++.|+++++|.+++.++.+++++|.+.++.+++++.++ +++.+||++..| ++
T Consensus 78 y~~q~~~~Gta~ai~~a~~~i~~--~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V--~~p~~yGV~~~d-~~ 152 (292)
T d1fxoa_ 78 YAVQPSPDGLAQAFLIGESFIGN--DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV--LDPERYGVVEFD-QG 152 (292)
T ss_dssp EEECSSCCCGGGHHHHTHHHHTT--SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC--SCGGGSEEEEEC-TT
T ss_pred EccCCCCCcHHHHHHhhhhhcCC--CceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEEC--CCHHHCeEEEEc-CC
Confidence 99999999999999999999962 23567888899999999999999999999999999998 677899999998 68
Q ss_pred CcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCC
Q 015259 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (410)
Q Consensus 162 ~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (410)
+++..+.|||..+.|+++.+|+|+|++++++.+....... .+.+++ .|+++.++++
T Consensus 153 ~ki~~~~EKP~~p~Snla~~G~Y~f~~~~~~~~~~l~~s~-----------------------rgE~ei-tD~~~~~l~~ 208 (292)
T d1fxoa_ 153 GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSP-----------------------RGELEI-TDVNRAYLER 208 (292)
T ss_dssp SCEEEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCT-----------------------TSSCCH-HHHHHHHHHT
T ss_pred CCEeEEEECCCCCCCCcEEEEEEEEChHHHHHHHhCCCCC-----------------------CCchhh-HHHHHHHHHc
Confidence 8999999999999999999999999999999887654322 133445 8999999888
Q ss_pred CceeEEecc--ceeeecCCccchhhhhHHHHh
Q 015259 242 KQLYTYETM--DFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 242 ~~i~~~~~~--g~~~~i~t~~~~~~an~~~~~ 271 (410)
+.+.++... .+|+|+||+++|++|+..+..
T Consensus 209 ~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~~ 240 (292)
T d1fxoa_ 209 GQLSVEIMGRGYAWLDTGTHDSLLEAGQFIAT 240 (292)
T ss_dssp TCEEEEECCTTSEEEECCSHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 877666543 459999999999999986543
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.2e-38 Score=287.89 Aligned_cols=228 Identities=19% Similarity=0.271 Sum_probs=195.1
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEe-cccchHHHHHHHHhhcccCCccEEE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLV-GFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv-~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
|+||||||| .|+||+|+|..+||||+||+|+|||+|+|+.|.. |+|+ ++.....++++++.+ ++|+.+++|
T Consensus 2 MkaiIlagG--~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~~g-~~~gi~I~y 78 (291)
T d1mc3a_ 2 MKGIILAGG--SGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDG-SEFGIQLEY 78 (291)
T ss_dssp CEEEEECCC--CCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTCEEEE
T ss_pred ccEEEECCc--CccccchhhcCCCccccEECCEehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHhCch-HhhCcEEEE
Confidence 789999999 9999999999999999999999999999999987 5444 555566788888775 678999999
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCc-EEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSH-IFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~-~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
+.|.++.|+++|+..+.++++ +++ +|++++|+++..++.++++.|.++...++++++++ +++++||++..| ++
T Consensus 79 ~~Q~~plGta~Ai~~a~~fi~---~~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V--~dP~~yGVve~d-~~ 152 (291)
T d1mc3a_ 79 AEQPSPDGLAQAFIIGETFLN---GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV--MDPERFGVVEFD-DN 152 (291)
T ss_dssp EECSSCCCSTHHHHHTHHHHT---TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEEC--SCCSSSBBCEEE-TT
T ss_pred EECCCCCchHHHHHHHHHHhC---CCCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEEC--CCcccCCCceec-cC
Confidence 999999999999999999996 244 56677778889999999999998888899999998 788999999999 67
Q ss_pred CcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCC
Q 015259 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (410)
Q Consensus 162 ~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (410)
++|..|.|||..+.++++.+|+|+|++++++.+.+...+. .+.+++ +|+++.+++.
T Consensus 153 g~i~~i~EKP~~p~Sn~a~~GiY~f~~~v~~~~~~lk~s~-----------------------rgE~EI-tdl~~~~l~~ 208 (291)
T d1mc3a_ 153 FRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSE-----------------------RGELEI-TSINQMYLEA 208 (291)
T ss_dssp EEEEECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCS-----------------------SSSCCH-HHHHHHHHHT
T ss_pred cceeEEEECCCCCCCCeEEEEEEEeChHHHHHHhcCCCCC-----------------------CCceee-hHHHHHHHHc
Confidence 8999999999999999999999999999999997654322 234445 8899988877
Q ss_pred CceeEEec--cceeeecCCccchhhhhHHH
Q 015259 242 KQLYTYET--MDFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 242 ~~i~~~~~--~g~~~~i~t~~~~~~an~~~ 269 (410)
+.+..+.+ ..+|+|+||+++|++|+..+
T Consensus 209 ~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 209 GNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp TCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred CCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 76555543 34699999999999999865
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=1e-32 Score=254.95 Aligned_cols=232 Identities=17% Similarity=0.294 Sum_probs=192.0
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecc-cchHHHHHHHHhhcccCCccE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGF-YEEREFALYVSSISNELRIPV 80 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~-~~~~~i~~~~~~~~~~~~~~i 80 (410)
..|+||||||| .||||+|+|...||||+||+|+|||+|+++.+.. ++|++. .+.+.++++++.. ++++.++
T Consensus 2 ~~MkavIlagG--~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~~-~~~~~~i 78 (295)
T d1lvwa_ 2 AHMKGIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDG-SQFGVRF 78 (295)
T ss_dssp CSCEEEEECCC--CCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTSEE
T ss_pred CCcEEEEECCC--CcccCCcccCCCCcccCeECCEEHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhccc-hhcCCEE
Confidence 36999999999 9999999999999999999999999999999886 555544 5557777887764 5677889
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
.++.++++.||++|++.+++++.. ++.++++++|+++..++..++..|.+....+++++.+. +++..||++..+ +
T Consensus 79 ~~v~e~~~~gta~Al~~a~~~l~~--~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~--~~~~~yG~i~~~-~ 153 (295)
T d1lvwa_ 79 SYRVQEEPRGIADAFIVGKDFIGD--SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYV--RDPRPFGVVEFD-S 153 (295)
T ss_dssp EEEECSSCCCGGGHHHHTHHHHTT--SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEEC--SCCTTSEEEEEC-T
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEc--CCCccccEEEEC-C
Confidence 999999999999999999999962 24577788888889999999999999888999998887 566789999998 6
Q ss_pred CCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
+++|..|.|||..+.+.++++|+|+|++.+|..+.+...... +.+.+ .++++.++.
T Consensus 154 ~~~v~~~~EKp~~~~s~~~~~Giy~~n~~if~~~~~~~~~~~-----------------------~e~~~-~~~~~~~~~ 209 (295)
T d1lvwa_ 154 EGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDR-----------------------GELEI-TSVNEEYLR 209 (295)
T ss_dssp TSBEEEEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTT-----------------------SCCCH-HHHHHHHHH
T ss_pred CCcEEEEeecccCcccceeecceEEECHHHHHHHHhcCCCcC-----------------------CCeec-cchHHHHHH
Confidence 789999999999888899999999999999988776432211 22333 677877775
Q ss_pred CC--ceeEEeccceeeecCCccchhhhhHHHH
Q 015259 241 KK--QLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 241 ~~--~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
.+ .++.+....+|.|+||+++|.+++..+.
T Consensus 210 ~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i~ 241 (295)
T d1lvwa_ 210 MGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp TTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred hCCCeEEEcCCCcEEeCCCChHHHHHHHHHHH
Confidence 54 4566667789999999999999987664
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=1.9e-32 Score=255.10 Aligned_cols=238 Identities=20% Similarity=0.340 Sum_probs=183.1
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhc-cc----
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSIS-NE---- 75 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~-~~---- 75 (410)
+++.||||||| +|+||+|+|..+||+|+||+|+ |||+|+|+.|.+ |+|++.+..+.+.+|+.+.. ..
T Consensus 10 ~~~~AIILAaG--~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~ 87 (307)
T d1yp2a2 10 RSVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 87 (307)
T ss_dssp HHEEEEEC--------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC------
T ss_pred CceEEEEECCC--CcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccccc
Confidence 46999999999 9999999999999999999885 999999999987 77777777777777776531 11
Q ss_pred --CCccEEEeeC------CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcc
Q 015259 76 --LRIPVRYLRE------DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE 147 (410)
Q Consensus 76 --~~~~i~~i~~------~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~ 147 (410)
.+....+..+ ....|++++++.++..+.+...++|++++||++++.++..+++.|+.++..++++......+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (307)
T d1yp2a2 88 KNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEK 167 (307)
T ss_dssp --CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHH
T ss_pred cccccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEEEecccc
Confidence 1112222221 22468999999999999765567899999999999999999999999998888888777656
Q ss_pred cccccceEEEcCCCCcEEEEecCCCCc---------------------cccceeeeEEEEcHHHHHHhhhcccccccchh
Q 015259 148 SASQFGELVADPDTNELLHYTEKPETF---------------------VSDLINCGVYVFTPDIFNAIQGVSSQRKDREN 206 (410)
Q Consensus 148 ~~~~~~~v~~d~~~~~v~~i~ekp~~~---------------------~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~ 206 (410)
....||++.+| ++++|..|.|+|... ...+.++|+|+|++++|..+.+...
T Consensus 168 ~~~~~gvv~~d-~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~------- 239 (307)
T d1yp2a2 168 RATAFGLMKID-EEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKF------- 239 (307)
T ss_dssp HHTTSEEEEEC-TTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTC-------
T ss_pred cccccceEEEC-CCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhcc-------
Confidence 67789999999 789999999997521 3457889999999999865533110
Q ss_pred hhccchhHhhhhhccCCCCCeeeeccchhccccCC-CceeEEeccceeeecCCccchhhhhHHHHhh
Q 015259 207 LRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQ 272 (410)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~ 272 (410)
.+..++..|+++.++++ ..+++++++|+|.|+|||++|.+||+.++..
T Consensus 240 ------------------~~~~~~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~ 288 (307)
T d1yp2a2 240 ------------------PGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 288 (307)
T ss_dssp ------------------TTCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCS
T ss_pred ------------------ccccchHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcC
Confidence 01223447888887765 4899999999999999999999999887754
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.95 E-value=2e-28 Score=217.72 Aligned_cols=220 Identities=17% Similarity=0.185 Sum_probs=159.9
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+|+||||||| .|+||+|+|...||||+||+|+|||+|+|+.|.+ |+|++++..+.++.+.. .|+.++.+
T Consensus 3 ~mkaiIlaaG--~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~g~~~i~iv~g~~~e~i~~~~~----~~~i~i~~ 76 (229)
T d1jyka_ 3 RVKAIILAAG--LGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKE----KYGVRLVF 76 (229)
T ss_dssp CCEEEEEECS--CCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHH----HHCCEEEE
T ss_pred ceeEEEECCC--CcccCCccccCCCcceeEECCEEHHHHHHHHHHHhCCcccccccccchhhhhhhhh----hccccccc
Confidence 8999999999 9999999999999999999999999999999976 77777666666755433 35677777
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
..+....|++++++.+++.+. ++|++.++|.+++..+.+.+ . ....+.... .+...++.+..+ +++
T Consensus 77 ~~~~~~~Gt~~sl~~a~~~l~----~~~ii~~dd~~~~~~~~~~~----~---~~~~~~~~~--~~~~~~~~~~~~-~~~ 142 (229)
T d1jyka_ 77 NDKYADYNNFYSLYLVKEELA----NSYVIDADNYLFKNMFRNDL----T---RSTYFSVYR--EDCTNEWFLVYG-DDY 142 (229)
T ss_dssp CTTTTTSCTHHHHHTTGGGCT----TEEEEETTEEESSCCCCSCC----C---SEEEEECEE--SSCSSCCEEEEC-TTC
T ss_pred cccccccccccccccchhhhc----ccccccccccccccchhhhh----h---ccccceeee--eeccccceeEEc-cCC
Confidence 778888999999999988885 67887777776665554322 1 122333333 345567777787 688
Q ss_pred cEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC
Q 015259 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242 (410)
Q Consensus 163 ~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 242 (410)
++..+.++|. .++..+|+|+|++..++.+.+............ + . +.++++..++++.
T Consensus 143 ~i~~~~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-~-~~~~~~~~~l~~~ 200 (229)
T d1jyka_ 143 KVQDIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFV-----------------D-L-YWDNMVKDNIKEL 200 (229)
T ss_dssp BEEEEECCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCT-----------------T-C-CTTHHHHTTGGGC
T ss_pred ceeeEEEecc---cceEEEEEEEEcHHHHHHHHHHHHHhhcccccc-----------------h-h-HHHHHHHHHHHhC
Confidence 9999988754 566789999999877655544322211110000 1 1 1156677777777
Q ss_pred ceeEEeccc-eeeecCCccchhhhhHHH
Q 015259 243 QLYTYETMD-FWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 243 ~i~~~~~~g-~~~~i~t~~~~~~an~~~ 269 (410)
.++.+...+ .|.+|+|++||.+|+..+
T Consensus 201 ~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 201 DVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp CEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred CceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 888887665 599999999999988654
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=1.4e-27 Score=215.85 Aligned_cols=224 Identities=21% Similarity=0.374 Sum_probs=168.1
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc--------
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN-------- 74 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~-------- 74 (410)
..+||||||| +|+||+|+|...||||+||+|+|||+|+|+.|.+ |+|++.+..+.+++++.+...
T Consensus 2 ~~kAiILAAG--~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~ 79 (259)
T d1tzfa_ 2 ASKAVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCEEEEEECS--CC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CceEEEECCC--ccccCChhhCCCCccceEECCEEHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccch
Confidence 4789999999 9999999999999999999999999999999997 788888888888888865210
Q ss_pred ------------cCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEE
Q 015259 75 ------------ELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVI 142 (410)
Q Consensus 75 ------------~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~ 142 (410)
.....+.++.+....++.+++..+.+.... +++|+++++|.+++.++..+++.|.......+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (259)
T d1tzfa_ 80 MAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD--DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT 157 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTT--SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE
T ss_pred hccccchhhhccccccceeEEeccccccccchhhhhhhhccC--CCceEEeccccccccchhhhhhhhcccccceeeccc
Confidence 001135566677788899999888777642 367999999999999999999998887777665554
Q ss_pred ecCcccccccceEEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccC
Q 015259 143 KVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRN 222 (410)
Q Consensus 143 ~~~~~~~~~~~~v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (410)
. ....++.+... ..++..+.+.+. ..+.+..+|+|++++++++.+....
T Consensus 158 ~----~~~~~~~~~~~--~~~i~~~~~~~~-~~~~~~~~G~y~~~~~~~~~i~~~~------------------------ 206 (259)
T d1tzfa_ 158 F----PPGRFGALDIQ--AGQVRSFQEKPK-GDGAMINGGFFVLNPSVIDLIDNDA------------------------ 206 (259)
T ss_dssp C----CCCCSEEEEEE--TTEEEEEEESCS-CCSCCEECCCEEECGGGGGGCCSTT------------------------
T ss_pred c----ccccCCceecc--cceEEeeeeccc-cceeeecceeccccchhhhhcccCc------------------------
Confidence 3 24456666554 456776655543 4577889999999999876664311
Q ss_pred CCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 223 LTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 223 ~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
..+..++++.|++++.+++|.++|+|.+|||++||..++..+..
T Consensus 207 -----~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~ 250 (259)
T d1tzfa_ 207 -----TTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEK 250 (259)
T ss_dssp -----CCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHT
T ss_pred -----CccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHc
Confidence 12337889989888899999999999999999999998877765
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=9.1e-27 Score=211.37 Aligned_cols=239 Identities=17% Similarity=0.225 Sum_probs=157.0
Q ss_pred ceEEEEEecCCCCCCccccC-CCCCCcccccc-CCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCcc
Q 015259 8 KVVAVIMVGGPTKGTRFRPL-SLNIPKPLFPL-GGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~l-t~~~pK~llpi-~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~ 79 (410)
++.||||||| .||||+|| |..+||+|+|+ +|+|||+|+|+.+.. ++|+..+..+.+.++ ++..
T Consensus 2 Ki~aVILAGG--~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~-------~~~~ 72 (268)
T d2cu2a2 2 KTYALVMAGG--RGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARP-------YADG 72 (268)
T ss_dssp CEEEEEECCC--CCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGG-------GCSS
T ss_pred CceEEEecCC--CcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHHHHhhh-------hccc
Confidence 5779999999 99999999 57889999997 579999999998775 667666665554332 2334
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCCh--HHHHHH---HHhcCCceEEEEEecCcccccccce
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL--PEMLDA---HRNYGGMGTILVIKVSAESASQFGE 154 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l--~~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~ 154 (410)
+.++.+....|+++++..+...+....++.|+|++||+++..++ ...+.. +.+.+..+++...+. +.+..||+
T Consensus 73 ~~ii~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~yG~ 150 (268)
T d2cu2a2 73 IRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPT--RPETEYGY 150 (268)
T ss_dssp SEEEEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCS--SCCSSSCE
T ss_pred cceeeeeecCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeecccc--ccccccce
Confidence 56666778889999988776655444468899999999987664 333443 223445556665554 66788999
Q ss_pred EEEcCCCC---cEEEEecCCCCc-------cccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCC
Q 015259 155 LVADPDTN---ELLHYTEKPETF-------VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNL 223 (410)
Q Consensus 155 v~~d~~~~---~v~~i~ekp~~~-------~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (410)
+..+.+.+ +|..|.|||... ...++++|+|+|+++++ +.+++......+.-.... . ....
T Consensus 151 i~~~~~~~~~~~v~~f~EKp~~~~~~~~~~~~~~~N~Giy~f~~~~l~~~~~~~~p~i~~~~~~~~-------~--~~~~ 221 (268)
T d2cu2a2 151 IRLGPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLL-------A--GASL 221 (268)
T ss_dssp EEEEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHH-------T--TCCH
T ss_pred EEeccccccchhhheeecccchhhhhhhhccCcccchhhhhcchHHHHHHHHhhhHHHHHHHHHHH-------h--cchH
Confidence 98762222 799999999732 24689999999999875 444433221111000000 0 0000
Q ss_pred CCCeeeeccchhcc--ccCCCceeEEeccceeeecCCccchhhhh
Q 015259 224 TTDFVRLDQDILSP--LAGKKQLYTYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 224 ~~~~~~l~~d~l~~--l~~~~~i~~~~~~g~~~~i~t~~~~~~an 266 (410)
.+.+..+...-+.+ |.+...+.+++.+++|.|+||++++++..
T Consensus 222 ~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~ 266 (268)
T d2cu2a2 222 EEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (268)
T ss_dssp HHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred HHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence 00000010111111 12346799999999999999999998754
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.90 E-value=2.1e-23 Score=186.99 Aligned_cols=226 Identities=18% Similarity=0.290 Sum_probs=166.1
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEee
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~ 84 (410)
.||||||| .|+||+| .+||||+||+|+|||+|+++.|.+ ++|++.+..+.+..+.. ..+.+..
T Consensus 3 ~AIIlAaG--~GtRl~~---~~PK~L~~i~Gkpli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~-------~~~~~~~ 70 (250)
T d1g97a2 3 FAIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLA-------GQTEFVT 70 (250)
T ss_dssp EEEEECCC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTT-------TTSEEEE
T ss_pred EEEEECCC--CCCCCCC---CCCceeeEECCeeHHHHHHHHHHHcCCCeEEEecccccchhhhhcc-------ccccccc
Confidence 59999999 9999999 689999999999999999999987 66666666655554432 2355555
Q ss_pred CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCc
Q 015259 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (410)
Q Consensus 85 ~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~ 163 (410)
.....|+.+++..+...+.....+.+++..+|.++ ..++.++++.|......+++...+. ..+..++.+..+ +.+.
T Consensus 71 ~~~~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~ 147 (250)
T d1g97a2 71 QSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAET--DNPFGYGRIVRN-DNAE 147 (250)
T ss_dssp CSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEEC--SCCTTSCEEEEC-TTCC
T ss_pred cccccccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhcccccccccee--cccCCCceEEEe-eceE
Confidence 67778999999998888864333344444555444 4569999999999888888888776 555678887777 6778
Q ss_pred EEEEecCCCC----ccccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 164 LLHYTEKPET----FVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 164 v~~i~ekp~~----~~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
+..+.++++. ..+++..+|+|+|++..+ +.+....... ..+.+.+ .++++.+
T Consensus 148 v~~~~~~~~~~~~~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~----------------------~~~~~~~-~~~~~~~ 204 (250)
T d1g97a2 148 VLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNN----------------------AQGEYYI-TDVIGIF 204 (250)
T ss_dssp EEEEECGGGCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCS----------------------TTCSCCG-GGHHHHH
T ss_pred EEEeeccccccccccccceeeeeeeecchHHHHHHHHHhccCc----------------------chhhHHH-hHHHHHH
Confidence 8888887642 346788999999998765 4443321110 1122223 7888887
Q ss_pred cCCC-ceeEEeccceeee--cCCccchhhhhHHHHhhh
Q 015259 239 AGKK-QLYTYETMDFWEQ--IKTPGMSLKCSGLYLAQF 273 (410)
Q Consensus 239 ~~~~-~i~~~~~~g~~~~--i~t~~~~~~an~~~~~~~ 273 (410)
++.+ .|.+++.+++|.+ |+|++|+..|...+.++.
T Consensus 205 ~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~~ 242 (250)
T d1g97a2 205 RETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRI 242 (250)
T ss_dssp HHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHH
T ss_pred HHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHHH
Confidence 7654 8999999998865 789999999988776553
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=2.9e-21 Score=172.83 Aligned_cols=223 Identities=17% Similarity=0.242 Sum_probs=153.6
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
.|++|||||| .|+||+| .+||||+||+|+|||+|+|+.|.. |+|++.+..+.+..+. .+....+
T Consensus 2 ~MkvIILAAG--~GtRm~~---~~PKpli~i~gkpiie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~------~~~~~~~ 70 (248)
T d2oi6a2 2 AMSVVILAAG--KGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQAL------KDDNLNW 70 (248)
T ss_dssp CEEEEEECCS--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC------CCTTEEE
T ss_pred CceEEEECCC--CCCCCCC---CCCeeeEEECChhHHHHHHHHHHHcCCcEEEeccCcccceeeeec------ccccccc
Confidence 5899999999 9999998 689999999999999999999998 7777777666655542 2234555
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC--hHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~--l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+.+....|+++++..+.+.+.. ..+++++.+|.++... +..++ +........++.... .++..++.+..+
T Consensus 71 ~~~~~~~g~~~~~~~~~~~i~~--~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~-- 142 (248)
T d2oi6a2 71 VLQAEQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLR--DAKPQGGIGLLTVKL--DDPTGYGRITRE-- 142 (248)
T ss_dssp EECSSCCCHHHHHHHHGGGSCT--TSEEEEEETTCTTCCHHHHHHHH--HHCCTTSEEEEEEEC--SCCTTSCEEEEE--
T ss_pred cccccCcccHHHHHhhhhhhcc--ccceeeecCccccccchhHHHHH--HHhhccccceeEEEe--cCCccccccccc--
Confidence 6677889999999999888753 3678888888876432 22222 222334445555554 556667777665
Q ss_pred CCcEEEEecCC----CCccccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 161 TNELLHYTEKP----ETFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 161 ~~~v~~i~ekp----~~~~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
.+....+..++ ......+..++.|.|+.+.+ +.+....... ....+.+ +|++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----------------------~~~e~~l-td~~ 199 (248)
T d2oi6a2 143 NGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNN----------------------AQGEYYI-TDII 199 (248)
T ss_dssp TTEEEEEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCCCS----------------------TTCSCCT-THHH
T ss_pred cCccceeeeccCCChhhhhhhhhhhhhhccchHHHHHHHHHhhccc----------------------cchhhhh-hHHH
Confidence 34455554332 23345667899999998764 5554332111 0122224 7888
Q ss_pred ccccCCC-ceeEEeccceee--ecCCccchhhhhHHHHhh
Q 015259 236 SPLAGKK-QLYTYETMDFWE--QIKTPGMSLKCSGLYLAQ 272 (410)
Q Consensus 236 ~~l~~~~-~i~~~~~~g~~~--~i~t~~~~~~an~~~~~~ 272 (410)
+.+++.+ .|.++...++|. .|+||+|+.+|.+.+.++
T Consensus 200 ~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~~ 239 (248)
T d2oi6a2 200 ALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSE 239 (248)
T ss_dssp HHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHHH
Confidence 8887654 888888887773 488999999998877654
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.60 E-value=6.6e-15 Score=131.77 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=80.2
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE---------------------
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT--------------------- 346 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------- 346 (410)
++.|.+.+.|++++.|+++|+|++++.||++|+|+++|.|. ++.||++|.+.++++|.
T Consensus 6 sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig~~~ 85 (259)
T d1j2za_ 6 TAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDN 85 (259)
T ss_dssp TCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSC
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEecccc
Confidence 56677777777777777777777777777777777777776 67777777777777661
Q ss_pred -----------------eeEECCCCEECCCcEEccCCC---------CCcceeeeEECCCCEECCCcEE-------cceE
Q 015259 347 -----------------NAIVGWKSSIGRWSRVQAEGD---------FNAKLGITILGEAVGVEDEVVV-------TNSI 393 (410)
Q Consensus 347 -----------------~~~i~~~~~i~~~~~i~~~~~---------~~~~~~~~~i~~~~~i~~~~~v-------~~~~ 393 (410)
+++|++++.++.++.+..... .....+.+.||++|+||.++.+ .+|+
T Consensus 86 ~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~~a~ 165 (259)
T d1j2za_ 86 LIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCM 165 (259)
T ss_dssp EECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCE
T ss_pred ccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEecccee
Confidence 233333333333333332211 0011133777788777777777 6889
Q ss_pred EcCCcEEcccCCCccc
Q 015259 394 VLPNKTLNVSVHQEII 409 (410)
Q Consensus 394 v~~~~~v~~~~~~~~~ 409 (410)
|+++++|+.|+|+..+
T Consensus 166 IgagSvV~kdVp~~~i 181 (259)
T d1j2za_ 166 IAGKSALGKDVPPYCT 181 (259)
T ss_dssp ECTTCEECSBBCTTEE
T ss_pred eeeeeeecccccccee
Confidence 9999999999998765
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.58 E-value=2.2e-14 Score=124.05 Aligned_cols=103 Identities=21% Similarity=0.302 Sum_probs=79.8
Q ss_pred CcEEccCeEECCCCEECCCcEE----CCCcEECCCcEECCCCEEe------------------------eeEECCCCEEC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKI----GPNVSISANARIGAGVRLI------------------------SCIILDGVEIM 340 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~------------------------~~~i~~~~~i~ 340 (410)
++.+.+++.||+++.|+++|.| +.++.||++|.|+++|.|. ++.||++|.||
T Consensus 34 ~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~~v~IG 113 (210)
T d1qrea_ 34 QASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLA 113 (210)
T ss_dssp TCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEEC
T ss_pred CCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeeccccccc
Confidence 4555556677777777777777 3467788888888888883 37789999999
Q ss_pred CCCEEE-eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 341 ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 341 ~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+++.|. +++|+++|.||.++.|.+ +.||++|+|++++.+.+++|+++..|+
T Consensus 114 ~~~~i~g~~~IGd~~~IG~gs~i~~----------~~IG~~~vIg~~svv~g~~i~~g~~I~ 165 (210)
T d1qrea_ 114 HQSQVHGPAAVGDDTFIGMQAFVFK----------SKVGNNCVLEPRSAAIGVTIPDGRYIP 165 (210)
T ss_dssp TTCEEEEEEEECTTCEECTTCEEEE----------EEECTTCEECTTCEEESCEECTTBEEC
T ss_pred cccccccCCcccCCcEeeCCccccc----------cccccCcEEecCcEecCcEeCCCcEEC
Confidence 999887 688999999999998887 788999999888888666666555554
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=4.1e-14 Score=123.63 Aligned_cols=203 Identities=14% Similarity=0.134 Sum_probs=118.0
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEEEee
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~ 84 (410)
||||||| .|+||+. ..||+|++++|+|||+|+|+.+.+ |+|++...... +.... ......+.++.
T Consensus 6 AIILAaG--~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~~---~~~~~-~~~~~~~~~~~ 76 (221)
T d1vpaa_ 6 AILLAAG--KGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFE---VVEKR-VFHEKVLGIVE 76 (221)
T ss_dssp EEEEECC--CCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHH---HHHTT-CCCTTEEEEEE
T ss_pred EEEccCc--CcccCCC---CCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhhh---HHHhh-hcccccccccc
Confidence 7999999 9999975 789999999999999999999864 66666543322 22221 11223445544
Q ss_pred CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 85 ~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
. ..+...++..+...+.....+.+++++||.++ . ..+..+++...+.... + ..... .+ .....+ .+
T Consensus 77 ~--~~~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~-~-~~~~~--~d----~~~~~~--~~ 144 (221)
T d1vpaa_ 77 G--GDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAA-T-LALKN--SD----ALVRVE--ND 144 (221)
T ss_dssp C--CSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEE-E-EEEEC--CS----EEEEEE--TT
T ss_pred c--cccccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhcccccc-c-ccccc--cc----eeEeec--Cc
Confidence 2 33456677777776654446789999999885 2 3477888877654322 2 22222 11 122222 23
Q ss_pred cEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC-C
Q 015259 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG-K 241 (410)
Q Consensus 163 ~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~-~ 241 (410)
+...+.+ . ..+...+-+.|....+....+. ..++ .|....+.. +
T Consensus 145 ~~~~~~~---~--~~~~~~~~~~~~~~~l~~~~~~-----------------------------~~~~-tD~~~l~~~~g 189 (221)
T d1vpaa_ 145 RIEYIPR---K--GVYRILTPQAFSYEILKKAHEN-----------------------------GGEW-ADDTEPVQKLG 189 (221)
T ss_dssp EEEEECC---T--TEEEEEEEEEEEHHHHHHHHTT-----------------------------CCCC-SSSHHHHHTTT
T ss_pred cceecch---H--HHHHhhhhhhhhHHHHHHHHHh-----------------------------CCCC-ccHHHHHHHcC
Confidence 3333321 1 2233445566666554332211 1112 444444433 3
Q ss_pred CceeEEeccceeeecCCccchhhhhHHH
Q 015259 242 KQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 242 ~~i~~~~~~g~~~~i~t~~~~~~an~~~ 269 (410)
..+..++.+.....|+||+|+..|...+
T Consensus 190 ~~v~~i~g~~~n~kI~t~eDl~~Ae~ll 217 (221)
T d1vpaa_ 190 VKIALVEGDPLCFKVTFKEDLELARIIA 217 (221)
T ss_dssp CCCEEEECCGGGCCCCSTTHHHHHHHHH
T ss_pred CceEEEecChhhcCCCCHHHHHHHHHHH
Confidence 4676665443445699999988776544
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.57 E-value=2.3e-14 Score=122.75 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=87.9
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCC-
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGD- 367 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~- 367 (410)
+..+.+.+.|++++.|+++++|++++.||++|+|++++.|.++.||++|.|... .+..+.+++++.||+++.+.....
T Consensus 8 s~~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~~-~i~~~~~g~~~~Ig~~~~i~~~~~i 86 (196)
T d1g97a1 8 ATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNS-MIEESSVADGVIVGPYAHIRPNSSL 86 (196)
T ss_dssp GCEECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECSC-EEESCEECTTCEECSSCEECSSCEE
T ss_pred eEEECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCcccccc-ceeeccccCcceeecceeccccccc
Confidence 456888899999999999999999999999999999999998899988888643 444444444444444433322100
Q ss_pred -------------------------------------------------CCcceeeeEECCCCEECCCcEE-------cc
Q 015259 368 -------------------------------------------------FNAKLGITILGEAVGVEDEVVV-------TN 391 (410)
Q Consensus 368 -------------------------------------------------~~~~~~~~~i~~~~~i~~~~~v-------~~ 391 (410)
.....+.++||+++++|.++.+ .+
T Consensus 87 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~~ 166 (196)
T d1g97a1 87 GAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDN 166 (196)
T ss_dssp CTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSCEECTT
T ss_pred ccceeecccccceeeecCcceEecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCCcEECCC
Confidence 0001134778899998888877 78
Q ss_pred eEEcCCcEEcccCCCccc
Q 015259 392 SIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 392 ~~v~~~~~v~~~~~~~~~ 409 (410)
++|++|++|++++|+..+
T Consensus 167 s~IgagsvVtkdvp~~~i 184 (196)
T d1g97a1 167 SLVGAGSTITKDVPADAI 184 (196)
T ss_dssp CEECTTCEECSCBCTTCE
T ss_pred CEECCCCEECcCcCCCCE
Confidence 899999999999998765
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=3.8e-15 Score=106.69 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=58.1
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (410)
.+..+.+++.||+++.|++++.|.+++.||++|+||++|.|.+|.|++++.|+++++|++|+|+++|.||++
T Consensus 7 ~~~~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGPf 78 (78)
T d1fxja1 7 ARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPF 78 (78)
T ss_dssp GGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEESCC
T ss_pred CeEEEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEECcC
Confidence 456677888888888888888888888888888888888888888888888888888888888888777764
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.56 E-value=2.1e-14 Score=128.41 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=30.1
Q ss_pred eeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 373 GITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 373 ~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
|.++||++|+||.++.+ .++.|++++.|+.|+|+..+
T Consensus 143 g~~~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~Vtkdvp~~~~ 186 (262)
T d2jf2a1 143 GHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVI 186 (262)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSBBCTTEE
T ss_pred cceeeCceEEeccCceeccccEeehhceeeccceEeecCCcccc
Confidence 33778888888777777 68899999999999998764
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.56 E-value=4.4e-14 Score=123.85 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=79.2
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCc
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRI 78 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~ 78 (410)
|.+++.+|||||| .|+||+. ..||+|++++|+|||+|+|+.+.+ |+|++..... +.+++....++.
T Consensus 1 M~k~i~~IIlAaG--~GtRm~~---~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~---~~~~~~~~~~~~ 72 (226)
T d1w77a1 1 MEKSVSVILLAGG--QGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFR---DIFEEYEESIDV 72 (226)
T ss_dssp CTTCEEEEEECCC------------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGT---HHHHTTTTSCSS
T ss_pred CCCceEEEEeCCc--cCccCcC---CCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhh---hhhhcccccccc
Confidence 4457899999999 9999986 789999999999999999999875 6777664332 223332233444
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCC
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGG 135 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~ 135 (410)
.+.++. .+...+++++.++..+.. ..+.+++..||.++ ...+..+++.+.+.+.
T Consensus 73 ~~~~~~--gg~~r~~sv~~~l~~~~~-~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~ 128 (226)
T d1w77a1 73 DLRFAI--PGKERQDSVYSGLQEIDV-NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA 128 (226)
T ss_dssp EEEEEC--CCSSHHHHHHHHHHTSCT-TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE
T ss_pred cccccc--ccchhhhhhhhhHhhhcc-ccccceecccccccccHHHhhhhhhhhhccCc
Confidence 555554 233467889888887753 24678888999885 2347788877765543
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.55 E-value=2.6e-14 Score=123.58 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=81.7
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEEe-----eeEECCCCEECCCCEEE------------------------
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-----SCIILDGVEIMENAVVT------------------------ 346 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~------------------------ 346 (410)
..|+++|.|+++|.|.+++.||++|.|+++|.|. +..||++|.|+++|+|.
T Consensus 23 p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T d1qrea_ 23 PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEY 102 (210)
T ss_dssp CEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEE
T ss_pred CccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccccccccc
Confidence 3677777777777777788888888888888883 57799999999999883
Q ss_pred eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 347 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 347 ~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
.++|+++|+||.++.|.+. +.||++++||.++++.+++|+.+.+|..
T Consensus 103 ~~~IG~~v~IG~~~~i~g~---------~~IGd~~~IG~gs~i~~~~IG~~~vIg~ 149 (210)
T d1qrea_ 103 AVYIGNNVSLAHQSQVHGP---------AAVGDDTFIGMQAFVFKSKVGNNCVLEP 149 (210)
T ss_dssp SEEECTTCEECTTCEEEEE---------EEECTTCEECTTCEEEEEEECTTCEECT
T ss_pred ceeeccccccccccccccC---------CcccCCcEeeCCccccccccccCcEEec
Confidence 4889999999999999876 9999999999999997667776666643
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.54 E-value=8.2e-14 Score=118.65 Aligned_cols=103 Identities=23% Similarity=0.210 Sum_probs=46.2
Q ss_pred EccCeEECCCCEEC--CCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCC
Q 015259 292 IIGDVYVHPSAKIH--PTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 292 i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~ 368 (410)
+++.++|++++.|+ +++.|.++++|+++|+||++|.| +.++.|+++|.|. ++.++.++.++.+++|+.+
T Consensus 77 I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I-----~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~--- 148 (193)
T d3bswa1 77 IHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVIL-----NTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKN--- 148 (193)
T ss_dssp ECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEE-----CTTCEECTTCEECTTCEECTTCEECTTCEECTT---
T ss_pred cCCCcEEeeeeEEccccCceEeeeeeecCCceeeecccc-----ccccccceeeeccccccccccccccccceeecc---
Confidence 34444444444442 23344444444444444433333 3333333333332 2333444444444444443
Q ss_pred CcceeeeEECCCCEECCCcEE-cceEEcCCcEEcccCCCcc
Q 015259 369 NAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEI 408 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~ 408 (410)
|.||.++.|.++++| .+|+|++|++|..++++..
T Consensus 149 ------~~IG~~s~I~~~v~Ig~~~~IgagsvV~~dv~~~~ 183 (193)
T d3bswa1 149 ------CFLGINSCVLPNLSLADDSILGGGATLVKNQDEKG 183 (193)
T ss_dssp ------CEECTTCEECTTCEECTTCEECTTCEECSCBCSCC
T ss_pred ------ccCCceeeEcCCeEECCCCEECCCCEECcCCCCCc
Confidence 444444444445555 4566666666666666554
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.7e-14 Score=126.37 Aligned_cols=210 Identities=14% Similarity=0.124 Sum_probs=119.6
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
+..||||||| .|+||+. +.||+|+|++|+|||+|+++.+.+ |+|++++....+...... ....+.
T Consensus 3 ~i~AIILAaG--~gtRm~~---~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~----~~~~v~ 73 (225)
T d1i52a_ 3 DVCAVVPAAG--FGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLA----NHPQIT 73 (225)
T ss_dssp CEEEEEEECC--CCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGG----GCTTEE
T ss_pred CEEEEEeCCC--cceeCCC---CCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhhhhhhhhc----cccccc
Confidence 7899999999 9999985 889999999999999999998865 677766544333222111 112444
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcC
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~ 159 (410)
+..+ ..+..++++.+...+.+ .+.+++..+|.++ ..++..+++........ .+...+. .+... ....
T Consensus 74 ~~~~--~~~~~~sv~~~~~~~~~--~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~~-~v~~~~~--~d~~~---~~~~- 142 (225)
T d1i52a_ 74 VVDG--GDERADSVLAGLKAAGD--AQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILAAPV--RDTMK---RAEP- 142 (225)
T ss_dssp EEEC--CSSHHHHHHHHHHTSTT--CSEEEECCTTCTTCCHHHHHHHHGGGGTCSSC-EEEEEEC--CSCEE---EECT-
T ss_pred cccC--CcchhHHHHhhhcccCc--cceeeeeccCCCCCCHHHHHHHHhhhhhcccc-cccccce--eeccc---hhcc-
Confidence 4433 33467889988888852 3567777888764 23366666655544333 3443333 22111 1111
Q ss_pred CCCcEEEEecCCCCccccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 160 DTNELLHYTEKPETFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 160 ~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
..+......++.. -....+.+.|..+.+ +.+..... +.+.+ +|....+
T Consensus 143 ~~~~~~~~~~~~~----~~~~~~~~~f~~~~l~~~~~~~~~--------------------------~~~~~-tD~~~l~ 191 (225)
T d1i52a_ 143 GKNAIAHTVDRNG----LWHALTPQFFPRELLHDCLTRALN--------------------------EGATI-TDEASAL 191 (225)
T ss_dssp TSSSEEEEECCTT----CEEEEEEEEEEHHHHHHHHHHHHH--------------------------TTCCC-CSHHHHH
T ss_pred cccccccccchHH----HHHHhhhhhhhhHHHHHHHHHHHh--------------------------cCCCC-CcHHHHH
Confidence 2333333333211 112234556666543 33332110 11123 5555444
Q ss_pred cC-CCceeEEeccceeeecCCccchhhhhHH
Q 015259 239 AG-KKQLYTYETMDFWEQIKTPGMSLKCSGL 268 (410)
Q Consensus 239 ~~-~~~i~~~~~~g~~~~i~t~~~~~~an~~ 268 (410)
.. +..+..+..+..-..|+||+|+..|...
T Consensus 192 ~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~ 222 (225)
T d1i52a_ 192 EYCGFHPQLVEGRADNIKVTRPEDLALAEFY 222 (225)
T ss_dssp HHTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred HHCCCceEEEecCccccCcCCHHHHHHHHHH
Confidence 43 3466665533223458999999888653
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.47 E-value=4.4e-13 Score=117.35 Aligned_cols=208 Identities=15% Similarity=0.169 Sum_probs=108.4
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPV 80 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i 80 (410)
++..||||||| .|+||+. ..||+|++++|+|||+|+++.+.+ ++|+++..... ...+... +....
T Consensus 2 ~K~iAIIlAaG--~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~~~-~~~~~~~---~~~~~ 72 (226)
T d1vgwa_ 2 RKNIALIPAAG--IGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTF-ADKVQTA---FPQVR 72 (226)
T ss_dssp CCEEEEEECC---------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCST-HHHHHHH---CTTSE
T ss_pred CceEEEEeCCC--CcccCCc---CCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhhhh-hhhhccc---cccee
Confidence 35679999999 9999974 789999999999999999999875 66776654433 3333321 22223
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhc----ccCCCcEEEEcCCccc-C-CChHHHHHHHHhcCCceEEEEEecCcccccccce
Q 015259 81 RYLREDKPHGSAGALYNFRDLIM----EDNPSHIFLLNCDVCC-S-FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGE 154 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~----~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 154 (410)
.+.. .......++..+...+. ....+.+++.+||.++ . ..+..+++.+.......++. .+. . ...
T Consensus 73 ~~~~--g~~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~~-~~~--~----~~~ 143 (226)
T d1vgwa_ 73 VWKN--GGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILA-VPV--A----DTL 143 (226)
T ss_dssp EECC--CCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEE-EEC--C----SCE
T ss_pred eccc--cccccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceeec-ccc--c----ccc
Confidence 3322 22234455555444332 1224567888999875 2 34888888887766554433 332 1 222
Q ss_pred EEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccc
Q 015259 155 LVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQD 233 (410)
Q Consensus 155 v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 233 (410)
... +++.+....++... .... .-..|....+ +.+... ....+ +|
T Consensus 144 ~~~--~~~~i~~~~~r~~~---~~~~-~p~~f~~~~l~~~~~~~----------------------------~~~~~-tD 188 (226)
T d1vgwa_ 144 KRA--ESGQISATVDRSGL---WQAQ-TPQLFQAGLLHRALAAE----------------------------NLGGI-TD 188 (226)
T ss_dssp EEE--SSSBEEEEECCTTE---EEEE-EEEEEEHHHHHHHHHC--------------------------------CC-CS
T ss_pred eec--cCCeEEeccchHHH---HHHH-hhhcccHHHHHHHHHHh----------------------------hcCCC-Cc
Confidence 233 35667666554221 1111 1234444433 333221 11112 34
Q ss_pred hhcccc-CCCceeEEeccceeeecCCccchhhhhH
Q 015259 234 ILSPLA-GKKQLYTYETMDFWEQIKTPGMSLKCSG 267 (410)
Q Consensus 234 ~l~~l~-~~~~i~~~~~~g~~~~i~t~~~~~~an~ 267 (410)
....+. .+..+..+.-+.....|+||+|+..|..
T Consensus 189 ~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~ 223 (226)
T d1vgwa_ 189 EASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRL 223 (226)
T ss_dssp HHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHH
T ss_pred HHHHHHHcCCceEEEECCccccCcCCHHHHHHHHH
Confidence 333332 2446766654444567999999887754
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=1.5e-13 Score=98.13 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=60.3
Q ss_pred EECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECC
Q 015259 309 KIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVED 385 (410)
Q Consensus 309 ~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~ 385 (410)
.|.+.+.||++|.|++++.|. ++.||+||.|+++|+|.+|+|++++.|++++.|.+ ++||++|.||+
T Consensus 10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~----------~~Ig~~~~IGP 77 (78)
T d1fxja1 10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVED----------ANLAAACTIGP 77 (78)
T ss_dssp EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEES----------EEECTTCEESC
T ss_pred EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEEC----------CEECCCCEECc
Confidence 466678888888888888887 68899999999999999999999999999999987 99999999987
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.44 E-value=8.3e-13 Score=112.31 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=92.3
Q ss_pred CcEEccCeEE--CCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEcc
Q 015259 289 NATIIGDVYV--HPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 289 ~~~i~~~~~i--~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 364 (410)
++.+.+++.| ++++.|++++.|++++.||++|.|+.++.|. ++.|+++|.++.++.+. ++.|+++|+||.++.|.+
T Consensus 80 ~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~ 159 (193)
T d3bswa1 80 SALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLP 159 (193)
T ss_dssp TCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeeccccccccccccccccceeeccccCCceeeEcC
Confidence 6778888888 4478999999999999999999999999997 78899999999999998 799999999999999999
Q ss_pred CCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 365 EGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 365 ~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
+ +.||++|.|++|++|.+. |.+++++..+
T Consensus 160 ~---------v~Ig~~~~IgagsvV~~d-v~~~~~~~G~ 188 (193)
T d3bswa1 160 N---------LSLADDSILGGGATLVKN-QDEKGVFVGV 188 (193)
T ss_dssp T---------CEECTTCEECTTCEECSC-BCSCCEECCC
T ss_pred C---------eEECCCCEECCCCEECcC-CCCCcEEEEe
Confidence 8 999999999999999665 4777777553
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.43 E-value=8.2e-13 Score=110.45 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=48.3
Q ss_pred EECCCcEECCCCEEee-----eEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 315 SISANARIGAGVRLIS-----CIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 315 ~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.||+++.+++++.+.. +++++++.++.++.+.++.|+++++++.++.|.++ +.||++|+|++++.|
T Consensus 53 ~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~g---------v~IG~~~~IgagsvV 123 (172)
T d1xhda_ 53 IIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDG---------AEIGEGAFIGAGSLV 123 (172)
T ss_dssp EECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTTCEECTT---------CEECTTCEECTTCEE
T ss_pred cccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccccccccceEEecccEeeCC---------cEEcCcccccceEEE
Confidence 4444444444444432 45555566665666666666667777777777666 777777777777777
Q ss_pred c-ceEEcCCcEEcc
Q 015259 390 T-NSIVLPNKTLNV 402 (410)
Q Consensus 390 ~-~~~v~~~~~v~~ 402 (410)
. +..|++++++..
T Consensus 124 ~~~~~i~~~~v~~G 137 (172)
T d1xhda_ 124 SQGKKIPPNTLAFG 137 (172)
T ss_dssp CTTCEECTTEEEEE
T ss_pred eeCeEECCCeEEEe
Confidence 4 456667666643
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=9.2e-13 Score=113.07 Aligned_cols=122 Identities=21% Similarity=0.281 Sum_probs=85.6
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEcc---
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA--- 364 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~--- 364 (410)
....+++.+.||+++.|+++|+|++++.||++|+|+++|.|.++.++.++.+...+...++.++.++.++.++.+..
T Consensus 7 ~~~~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~ 86 (201)
T d2oi6a1 7 ARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAE 86 (201)
T ss_dssp GGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCE
T ss_pred CeEEECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCccccccccee
Confidence 45678889999999999999999999999999999999999866665555555444444444444444333333211
Q ss_pred -------------------------------------------CCC----CCcceeeeEECCCCEECCCcEE-------c
Q 015259 365 -------------------------------------------EGD----FNAKLGITILGEAVGVEDEVVV-------T 390 (410)
Q Consensus 365 -------------------------------------------~~~----~~~~~~~~~i~~~~~i~~~~~v-------~ 390 (410)
+.- .....+.+.|++++++|.++.+ .
T Consensus 87 ~~~~~~i~~~~~~~~~~ig~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~ 166 (201)
T d2oi6a1 87 LLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGK 166 (201)
T ss_dssp ECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECT
T ss_pred eeeeeeecceeeeeeeeeCCCeEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEECC
Confidence 000 0011223788888888888877 6
Q ss_pred ceEEcCCcEEcccCCCccc
Q 015259 391 NSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 391 ~~~v~~~~~v~~~~~~~~~ 409 (410)
+|+|+++++|++|+|+..+
T Consensus 167 ~s~IgagsvV~kdVp~~si 185 (201)
T d2oi6a1 167 GATIAAGTTVTRNVGENAL 185 (201)
T ss_dssp TCEECTTCEECSCBCTTCE
T ss_pred CCEECCCCEEeeecCCCCE
Confidence 8899999999999998754
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=5e-13 Score=113.85 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=50.5
Q ss_pred CCcEECCCcEECCCCEEe---eeEECCCCEECCCCEEE-------------------eeEECCCCEECCCcEEccCCCCC
Q 015259 312 PNVSISANARIGAGVRLI---SCIILDGVEIMENAVVT-------------------NAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 312 ~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
.++.||++|.|+.+|+|. ...||++|.|++++.|. .++|+++|+||.++.|.++
T Consensus 73 ~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~G---- 148 (200)
T d1krra_ 73 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG---- 148 (200)
T ss_dssp TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTT----
T ss_pred CccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccc----
Confidence 355566666666666663 35677777777777774 2467777777777777666
Q ss_pred cceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 370 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+.||++|.|++|++|.+. |.+++++.
T Consensus 149 -----v~IG~~~vIgagSvV~kd-vp~~~iv~ 174 (200)
T d1krra_ 149 -----VTIGDNSVIGAGSIVTKD-IPPNVVAA 174 (200)
T ss_dssp -----CEECTTCEECTTCEECSC-BCTTEEEE
T ss_pred -----cccCCCcEEeCCCEEeeE-cCCCcEEE
Confidence 677777777777776443 34554443
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.39 E-value=1.4e-12 Score=109.18 Aligned_cols=100 Identities=19% Similarity=0.156 Sum_probs=71.1
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEE----------------------Eee
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVV----------------------TNA 348 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i----------------------~~~ 348 (410)
.+.||++|.|+++|+|.+++.||++|.|+++|.|. ...+++++.++..+.+ ..+
T Consensus 10 ~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (173)
T d1v3wa_ 10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGA 89 (173)
T ss_dssp CCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESC
T ss_pred CCEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeee
Confidence 34666666666666666677777777777777774 3456777766666655 247
Q ss_pred EECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc-ceEEcCCcEEccc
Q 015259 349 IVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 403 (410)
Q Consensus 349 ~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~v~~~~~v~~~ 403 (410)
.|+++|+||.+|.|.++ +.||++|+|+++++|. ++.|+|++++..+
T Consensus 90 ~Ig~~~~ig~~~~i~~g---------v~Ig~~~vIgagsvV~~~~~i~~~~iv~G~ 136 (173)
T d1v3wa_ 90 KVGNYVIIGISSVILDG---------AKIGDHVIIGAGAVVPPNKEIPDYSLVLGV 136 (173)
T ss_dssp EECSSEEECTTCEECTT---------CEECSSEEECTTCEECTTCEECTTEEEEET
T ss_pred ecCCcccccceeeecCC---------EEEcceeEEcCCcEEeCCeEeCCCCEEcCC
Confidence 77778888888888777 7888888888888884 5777888777653
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=99.38 E-value=2.5e-12 Score=107.44 Aligned_cols=104 Identities=12% Similarity=0.127 Sum_probs=81.6
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEEe-----eEECCCCEECCCcEEccC
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVTN-----AIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~ 365 (410)
.+.||+++.|+++|+|.+++.||++|.|+++|.|. ..+||+++.++.++.+.. +++++++.++.++.+.+
T Consensus 12 ~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~- 90 (172)
T d1xhda_ 12 KPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHS- 90 (172)
T ss_dssp CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEES-
T ss_pred CCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccc-
Confidence 35788888888888888888899999999999886 368999999999999973 78899999888888776
Q ss_pred CCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcc--cCCCcc
Q 015259 366 GDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNV--SVHQEI 408 (410)
Q Consensus 366 ~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~--~~~~~~ 408 (410)
+.|+++++|+.++++ .+|+|+++++|.+ ++++..
T Consensus 91 ---------~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~ 133 (172)
T d1xhda_ 91 ---------CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNT 133 (172)
T ss_dssp ---------CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTE
T ss_pred ---------cccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECCCe
Confidence 555555555555554 6888899999985 466654
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.35 E-value=3.1e-11 Score=106.50 Aligned_cols=224 Identities=17% Similarity=0.225 Sum_probs=136.1
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
+..+||+|.| .++|+.. |+|++++|+|||+|+++.+.+ |+|++. .+.+..... .++.++.
T Consensus 2 k~i~iIpAR~--~SkRl~~------Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td--~~~i~~~~~----~~~~~~~ 67 (245)
T d1h7ea_ 2 KAVIVIPARY--GSSRLPG------KPLLDIVGKPMIQHVYERALQVAGVAEVWVATD--DPRVEQAVQ----AFGGKAI 67 (245)
T ss_dssp CEEEEEECCS--CCSSSTT------GGGCEETTEEHHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHH----HTTCEEE
T ss_pred CEEEEEcCCC--CCcCCCC------ccccccCCccHHHHHHHHHHhCCCCCeEEEecc--cccchhhhh----hcCceEE
Confidence 5789999999 8999843 999999999999999999876 555544 233334333 2444444
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--CChHHHHHHHHhcCCceEEEEEec-C-cccccccc-eEE
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHRNYGGMGTILVIKV-S-AESASQFG-ELV 156 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--~~l~~~l~~~~~~~~~~~l~~~~~-~-~~~~~~~~-~v~ 156 (410)
+.. ....+..+.+..+.+.+. .+.++.+.||.++- ..+..+++.+.............. . ........ ...
T Consensus 68 ~~~-~~~~~~~~~~~~~~~~~~---~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~ 143 (245)
T d1h7ea_ 68 MTR-NDHESGTDRLVEVMHKVE---ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVV 143 (245)
T ss_dssp ECC-SCCSSHHHHHHHHHHHSC---CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEE
T ss_pred Eec-CccccccHHHHHHHHhcC---CCEEEEecchhhhcccccchhhhhcccccccccccccccccccccccCCcceeec
Confidence 433 333344566666667675 46777889999863 347777887766544332222221 1 11111111 222
Q ss_pred EcCCCCcEEEEecCCC------CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeee
Q 015259 157 ADPDTNELLHYTEKPE------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRL 230 (410)
Q Consensus 157 ~d~~~~~v~~i~ekp~------~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (410)
.. .......+...+. .........|+|.|+++.+..+........+ . .+ .
T Consensus 144 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~s~~e---~-----------------~e--~- 199 (245)
T d1h7ea_ 144 VN-TRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPE---Q-----------------AE--S- 199 (245)
T ss_dssp EC-TTCBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHH---H-----------------HH--T-
T ss_pred cc-hhhhhhhhhhhhhhhhhcccccccceeeeeEEeeeccccccccccCChhh---h-----------------hh--h-
Confidence 32 3455666655432 1234455689999999988765432211100 0 00 0
Q ss_pred ccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhhhh
Q 015259 231 DQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFR 274 (410)
Q Consensus 231 ~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~ 274 (410)
-+.++.+-.+..+..+...+.+.+|||++||..|...+.....
T Consensus 200 -ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~~~~ 242 (245)
T d1h7ea_ 200 -LEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQELA 242 (245)
T ss_dssp -CTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHhhhh
Confidence 2344433355688888888888999999999999877665543
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=99.34 E-value=5.1e-12 Score=109.22 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=88.7
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEee-eEECCCCEECCCCEEE---------eeEECCCCEEC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVVT---------NAIVGWKSSIG 357 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~i~~~~~i~ 357 (410)
.++.++.++||++++.+.| +++.-+++||++|.|..+++|++ +.||++|+|+.++.|. .++|+++|.||
T Consensus 107 Pga~VR~GayI~~~vVlmp-s~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IG 185 (274)
T d3tdta_ 107 PPATVRQGAFIARNTVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIG 185 (274)
T ss_dssp TTCEEBTTCEECTTCEECS-EEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEEC
T ss_pred CCceeccCcEECCCcEEee-eEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEec
Confidence 3666777888888887764 78888999999999999999985 5799999999999886 36799999999
Q ss_pred CCcEEccCCCCCcceeeeEECCCCEECCCcEEcce--------------EEcCCcEEcc
Q 015259 358 RWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS--------------IVLPNKTLNV 402 (410)
Q Consensus 358 ~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~--------------~v~~~~~v~~ 402 (410)
++|.|..+ ++||++++|++|++|..+ .|+|+++|-+
T Consensus 186 a~s~v~eg---------v~Vg~~avi~~gv~i~~~t~i~d~~~g~~~~g~vP~~svvv~ 235 (274)
T d3tdta_ 186 ARSEVVEG---------VIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVS 235 (274)
T ss_dssp TTCEECTT---------CEECTTCEECTTCEECTTCCEEETTTCCEESSEECTTEEEEE
T ss_pred cCceEecC---------EEecCceEeccceEEeccccceeccCCcEeccccCCCCEEec
Confidence 99999988 999999999999999554 5777777743
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.34 E-value=6.9e-12 Score=111.77 Aligned_cols=110 Identities=18% Similarity=0.152 Sum_probs=59.9
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-------------eeEECCCCE
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-------------NAIVGWKSS 355 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~~~~~ 355 (410)
+.|.+++.||+++.|+++|+|++++.||++|.|++++.|. ++.+++++.+.+++.+. ...|++++.
T Consensus 12 a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~v~IG~~v~ 91 (262)
T d2jf2a1 12 AIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNR 91 (262)
T ss_dssp CEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCE
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCceEEECCeee
Confidence 3344444444444444444444445555555555555554 45556666665555553 367899999
Q ss_pred ECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEc
Q 015259 356 IGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLN 401 (410)
Q Consensus 356 i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~ 401 (410)
|++++.|..+.... .+.+.||+++.+.+++.| ++|.|+.+.++.
T Consensus 92 ig~~~~i~~~~~~~--~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~ 136 (262)
T d2jf2a1 92 IRESVTIHRGTVQG--GGLTKVGSDNLLMINAHIAHDCTVGNRCILA 136 (262)
T ss_dssp ECTTCEEECCCTTT--TSEEEECSSCEECTTCEECTTCEECSSCEEC
T ss_pred ecceEeccCccccC--ccceEECCCCEEecccccccccccCCCeeec
Confidence 99999887653211 111456666666655555 455555544443
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.31 E-value=5.4e-12 Score=112.47 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=40.8
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEEC
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVG 351 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~ 351 (410)
+|++.++|+|+|.|++++.|+++++||++++|+++|.|+ +++|+.+|.||+++.+. +++|+
T Consensus 2 ~Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig 64 (259)
T d1j2za_ 2 KIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLG 64 (259)
T ss_dssp CBCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEES
T ss_pred cCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEEC
Confidence 466677777777777777777777777777777777665 56666666666666665 45553
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.30 E-value=4e-12 Score=101.59 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=56.0
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCC-------------------CEECCCCEEEeeEECCCCE
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDG-------------------VEIMENAVVTNAIVGWKSS 355 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~i~~~~~ 355 (410)
+++|+++|.|. ++.|. +++||++|+|++++.|.+++++++ +.||++|.|.+++|+++|.
T Consensus 14 ~s~Ig~g~~I~-~~~i~-~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~ 91 (135)
T d1yp2a1 14 DSVIGEGCVIK-NCKIH-HSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNAR 91 (135)
T ss_dssp EEEECTTCEEE-EEEEE-SCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCE
T ss_pred eCEECCCCEEe-CCEEe-ccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCE
Confidence 46677777775 44553 788888888888888887776654 7899999999999999999
Q ss_pred ECCCcEEccC
Q 015259 356 IGRWSRVQAE 365 (410)
Q Consensus 356 i~~~~~i~~~ 365 (410)
||+++.+.+.
T Consensus 92 IG~g~~i~~~ 101 (135)
T d1yp2a1 92 IGDNVKIINK 101 (135)
T ss_dssp ECTTCEECCS
T ss_pred ECCCcEECCC
Confidence 9999999886
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=5.6e-12 Score=106.74 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=74.6
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
|.++.||||||| +|+||+. .||+|++++|+|||+|+++.+.. ++|++..+.+... ..+..+.
T Consensus 1 M~~i~~iILAgG--~ssRmG~----~~K~ll~~~g~~ll~~~l~~l~~~~~~ivv~~~~~~~~~~--------~~~~~v~ 66 (188)
T d1e5ka_ 1 MTTITGVVLAGG--KARRMGG----VDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIYQ--------ASGLKVI 66 (188)
T ss_dssp CCSEEEEEECCC--CCSSSCS----SCGGGSEETTEEHHHHHHHHHHHHCSCEEEECSSSHHHHH--------TTSCCEE
T ss_pred CCceeEEEEcCC--CCcCCCC----CCcccCEECCEehhHHHHhhhcccccccccccCccHHhhh--------hcCCCcc
Confidence 456899999999 9999973 38999999999999999999887 7777665543321 1233333
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCC-hHHHHH
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEMLD 128 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~-l~~~l~ 128 (410)
........+...++..+..... .+.+++++||.++ ..+ +..+++
T Consensus 67 ~d~~~~~~~~~~g~~~~~~~~~---~~~vlv~~~D~P~i~~~~i~~L~~ 112 (188)
T d1e5ka_ 67 EDSLADYPGPLAGMLSVMQQEA---GEWFLFCPCDTPYIPPDLAARLNH 112 (188)
T ss_dssp CCCTTCCCSHHHHHHHHHHHCC---SSEEEEEETTCTTCCTTHHHHHHH
T ss_pred ccccccccchhHHHHHHHHhcc---cceEEEeccCCCCCCHHHHHHHHH
Confidence 3222344566777776665554 4789999999985 444 555544
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.28 E-value=7.8e-11 Score=103.98 Aligned_cols=220 Identities=15% Similarity=0.099 Sum_probs=133.2
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
+.|||+|.| .++|+.. |+|.+++|+|||+|+++.+.+ |+|.+. .+.+.++... ++.++.+.
T Consensus 2 ~i~iIpAR~--gSkrip~------KnL~~i~GkpLI~~~i~~a~~s~i~~iiVsTd--~~~i~~~~~~----~g~~v~~~ 67 (246)
T d1vh1a_ 2 FVVIIPARY--ASTRLPG------KPLVDINGKPMIVHVLERARESGAERIIVATD--HEDVARAVEA----AGGEVCMT 67 (246)
T ss_dssp CEEEEECCC--CCC--CC------TTTCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEEC
T ss_pred EEEEEecCC--CCcCCCC------chhhhcCCccHHHHHHHHHHHcCCCcEEEEec--Cccccchhhc----ccccceee
Confidence 579999999 8888833 999999999999999999887 566553 3455555443 46666666
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--CChHHHHHHHHhcCCceEEEEEecCccc-cc--ccceEEEc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHRNYGGMGTILVIKVSAES-AS--QFGELVAD 158 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--~~l~~~l~~~~~~~~~~~l~~~~~~~~~-~~--~~~~v~~d 158 (410)
.+....++....... ........+.++.+.||.++. .++..+++.+.....+............ .. ....+..+
T Consensus 68 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~ 146 (246)
T d1vh1a_ 68 RADHQSGTERLAEVV-EKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLD 146 (246)
T ss_dssp C-----CHHHHHHHH-HHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCEEEEC
T ss_pred cccccccchHHHHHH-HhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchhcccCCCcceeeec
Confidence 655555555444433 333322245788889999863 4578888888777766555555442111 11 11224455
Q ss_pred CCCCcEEEEecCCC-------------CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCC
Q 015259 159 PDTNELLHYTEKPE-------------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225 (410)
Q Consensus 159 ~~~~~v~~i~ekp~-------------~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (410)
.++.+..+.+.+. .....+...|+|+|++..+...........+ ..
T Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E---~~----------------- 205 (246)
T d1vh1a_ 147 -AEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLE---HI----------------- 205 (246)
T ss_dssp -TTSBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHSCCCHHH---HH-----------------
T ss_pred -ccCcccccccccchhhhhhhhhhhhccchhhheecceeeechhhhhhhccCCCChHH---HH-----------------
Confidence 5678887766532 1233455789999999987655543221110 00
Q ss_pred CeeeeccchhccccCCCceeEEeccc-eeeecCCccchhhhhHH
Q 015259 226 DFVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGL 268 (410)
Q Consensus 226 ~~~~l~~d~l~~l~~~~~i~~~~~~g-~~~~i~t~~~~~~an~~ 268 (410)
+ + .+.++.+-.+..+..+.... ...+|||++|+..|...
T Consensus 206 e--~--le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~ 245 (246)
T d1vh1a_ 206 E--M--LEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAE 245 (246)
T ss_dssp H--T--CTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHH
T ss_pred H--h--HHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhc
Confidence 0 0 23444333455788777654 46799999999887653
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.27 E-value=1.4e-10 Score=102.73 Aligned_cols=223 Identities=13% Similarity=0.141 Sum_probs=137.8
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
+.|||+|.| .++|+.. |.|.+++|+|||+|+++.+.+ |+|++. .+.+..... .++..+.+.
T Consensus 2 ~~~iIpAR~--gSkRlp~------Knl~~i~GkpLI~~~i~~a~~s~i~~IiVsTd--~~~i~~~~~----~~~~~~~~~ 67 (255)
T d1vica_ 2 FTVIIPARF--ASSRLPG------KPLADIKGKPMIQHVFEKALQSGASRVIIATD--NENVADVAK----SFGAEVCMT 67 (255)
T ss_dssp CEEEEECCC--CCSSSTT------GGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH----HTTCEEEEC
T ss_pred EEEEEecCC--CCCCCCC------chhhhhCCcCHHHHHHHHHHHCCCCeEEEEcC--Ccccchhhh----hhcccccee
Confidence 579999999 8888833 999999999999999998876 555553 233444333 356667777
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--CChHHHHHHHHhcCCceEEEEEecCc-cc--ccccceEEEc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHRNYGGMGTILVIKVSA-ES--ASQFGELVAD 158 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--~~l~~~l~~~~~~~~~~~l~~~~~~~-~~--~~~~~~v~~d 158 (410)
.+....|+..+...+..... ...+.++.+.||.++. .++..+++.+.......+........ .. ...+.....+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~-~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 146 (255)
T d1vica_ 68 SVNHNSGTERLAEVVEKLAI-PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTD 146 (255)
T ss_dssp CCSSCCHHHHHHHHHHHTTC-CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEEC
T ss_pred eeccCCcchhhHHHHHHhhc-cCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhhccCccceeeeec
Confidence 66666566555444444433 2245678889999863 34788888887776665555554321 11 1122233455
Q ss_pred CCCCcEEEEecCCC-----------------CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhcc
Q 015259 159 PDTNELLHYTEKPE-----------------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATR 221 (410)
Q Consensus 159 ~~~~~v~~i~ekp~-----------------~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (410)
+.+.+..+.+.+. .........|+|+|++..+..+........+
T Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~le------------------ 207 (255)
T d1vica_ 147 -KDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLE------------------ 207 (255)
T ss_dssp -TTSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHH------------------
T ss_pred -cCCcccccccccccccchhhhhccchhhcccccchheeeeeecccHHHHhhhhccCCChhH------------------
Confidence 5677777766532 1223345689999999887665432211100
Q ss_pred CCCCCeeeeccchhccccCCCceeEEeccc-eeeecCCccchhhhhHHHHh
Q 015259 222 NLTTDFVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 222 ~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g-~~~~i~t~~~~~~an~~~~~ 271 (410)
.... .+.++.+-.+..|..+.... .+.+|||++|+..|...+..
T Consensus 208 ----~~e~--le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilkk 252 (255)
T d1vica_ 208 ----NLEK--LEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAA 252 (255)
T ss_dssp ----HHHT--CTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred ----HHHh--HHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHHH
Confidence 0000 12233333455777776543 47899999999999766543
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=1.9e-12 Score=113.64 Aligned_cols=112 Identities=17% Similarity=0.198 Sum_probs=81.2
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+..||||||| .|+||++++. .||+|+|++|+|||+|+++.+.. ++|++.+... .....
T Consensus 2 ~~~avIlA~G--~~~r~~r~g~-~~K~L~~i~Gkpli~~~~~~l~~~~~~~vvv~~~~~~~-------------~~~~~- 64 (231)
T d2dpwa1 2 RPSAIVLAGG--KEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV-------------PAPAL- 64 (231)
T ss_dssp CCEEEEECCC--BCSGGGTTTC-SBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSSCS-------------SCCSE-
T ss_pred CceEEEECCC--CCCCCCCCCC-CCceeeEECCeeHHHHHHHHHHhcCCCeEEeeeecccc-------------ceeee-
Confidence 6789999999 9999998873 48999999999999999999987 5555443211 11111
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEe
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIK 143 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~ 143 (410)
......|..++++.+++.+. ++++++.||.++ ...+..+++.+.+ .+..+.+..
T Consensus 65 -~~~~~~~~~~~v~~al~~~~----~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~ 120 (231)
T d2dpwa1 65 -TLPDRGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLDKAPE--AALVYPIVP 120 (231)
T ss_dssp -EECCCSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHHHCCS--CSEEEEEEE
T ss_pred -ecccchHHHHHHHHHHHhhc----CceEEeeCCCccCCHHHHHHHHHHhhh--cCceEEEEe
Confidence 12456688999999998885 789999999975 3447888776543 343444433
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=4.8e-12 Score=106.10 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=60.1
Q ss_pred cCeEECCCCEECCCcEEC--CCcEECCCcEECCCCEEee-eEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCC
Q 015259 294 GDVYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLIS-CIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
.++.||+++.|+++|+|. ..+.||++|.|+++|.|.+ +.+++.+....++.+. .++|+++|+||.+|.|.++
T Consensus 71 ~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~G---- 146 (182)
T d1ocxa_ 71 YNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPG---- 146 (182)
T ss_dssp TTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTT----
T ss_pred cceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCc----
Confidence 344555555555555553 3446666666666666653 3345555555555555 4577777777777777777
Q ss_pred cceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 370 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+.||++|+||+|++|.+. |.+++++..
T Consensus 147 -----v~IG~~~vIgagsvV~kd-vp~~~i~~G 173 (182)
T d1ocxa_ 147 -----VTIGDNVVVASGAVVTKD-VPDNVVVGG 173 (182)
T ss_dssp -----CEECTTCEECTTCEECSC-BCSSEEEET
T ss_pred -----EEECCCCEECCCCEEccC-CCCCeEEEe
Confidence 777777777777777543 355554433
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=5.6e-12 Score=105.67 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=49.6
Q ss_pred EECCCCEECCCCEEEe-eEE------CCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 332 IILDGVEIMENAVVTN-AIV------GWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 332 ~i~~~~~i~~~~~i~~-~~i------~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
.||++|.|+++|.|.. +.+ ..++.++..++|+.+ +.||.+|.|.+|++| .+|+|++|++|..+
T Consensus 94 ~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~---------~~iG~~~~I~~Gv~IG~~~vIgagsvV~kd 164 (182)
T d1ocxa_ 94 RIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNN---------VWIGGRAVINPGVTIGDNVVVASGAVVTKD 164 (182)
T ss_dssp EECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTT---------CEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred EECCCeEECcCceEeecccccceeeeeccceEcceeEECce---------EeeCceeeccCcEEECCCCEECCCCEEccC
Confidence 5788888888888873 333 344455555555555 666666666666667 79999999999999
Q ss_pred CCCccc
Q 015259 404 VHQEII 409 (410)
Q Consensus 404 ~~~~~~ 409 (410)
+|+..+
T Consensus 165 vp~~~i 170 (182)
T d1ocxa_ 165 VPDNVV 170 (182)
T ss_dssp BCSSEE
T ss_pred CCCCeE
Confidence 998765
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=6.8e-11 Score=100.42 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=54.6
Q ss_pred ECCCcEECCCcEE--CCCcEECCCCEEeeeEECCCCEECCCCEEE---eeEECCCCEECCCcEEccCCC---------CC
Q 015259 304 IHPTAKIGPNVSI--SANARIGAGVRLISCIILDGVEIMENAVVT---NAIVGWKSSIGRWSRVQAEGD---------FN 369 (410)
Q Consensus 304 i~~~~~i~~~~~i--g~~~~i~~~~~i~~~~i~~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~~---------~~ 369 (410)
|++++.|++++++ |.+++||+++.| +.+|+|. .++||++|.|++++.|..... ..
T Consensus 57 iG~~~~I~p~~~i~~G~nv~IG~~~~I-----------~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~ 125 (200)
T d1krra_ 57 VGENAWVEPPVYFSYGSNIHIGRNFYA-----------NFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGE 125 (200)
T ss_dssp CCSSCEECSCEEESCSTTEEECSSCEE-----------CSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCC
T ss_pred CCCCCEEcCCEEEecCCccEECCccEE-----------CceEEEecCCCcEeCCCccccceeEEecccccceecccccce
Confidence 3333444444444 555555555444 3333332 346777777777776654211 11
Q ss_pred cceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 370 AKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
...+.++||++|+||.+++| .+|+|++|++|..++|+..+
T Consensus 126 ~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~kdvp~~~i 172 (200)
T d1krra_ 126 MYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVV 172 (200)
T ss_dssp BEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred eecceEEEccCcccceeeecccccccCCCcEEeCCCEEeeEcCCCcE
Confidence 11233567777777666666 67888888888888888765
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.22 E-value=9e-11 Score=99.76 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=38.8
Q ss_pred eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 348 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 348 ~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
++|+++|++|.++.|.++ +.||+++.|++++.+.+. |.|++++..+
T Consensus 143 ~~Ig~~~~iG~~~~I~~g---------v~IG~~s~IgagsvVtkd-vp~~~i~~G~ 188 (196)
T d1g97a1 143 TVIGNNVFVGSNSTIIAP---------VELGDNSLVGAGSTITKD-VPADAIAIGR 188 (196)
T ss_dssp EEECTTCEECTTCEEESS---------CEECTTCEECTTCEECSC-BCTTCEECCC
T ss_pred eEEecCCEEeeeeEEcCC---------cEECCCCEECCCCEECcC-cCCCCEEEec
Confidence 557888888888888887 999999999999999766 6888887764
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=99.17 E-value=1.2e-10 Score=100.44 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=56.8
Q ss_pred ECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCCcceeeeEECCCC
Q 015259 304 IHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAV 381 (410)
Q Consensus 304 i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~ 381 (410)
+-|++.++.+++|++++++.+ +.|. +++||++|.|..++.|. .+.||++|.|+.++.|++.-+.... ..++|+|+|
T Consensus 105 vvPga~VR~GayI~~~vVlmp-s~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~-~p~iIed~~ 182 (274)
T d3tdta_ 105 VVPPATVRQGAFIARNTVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQA-NPTIIEDNC 182 (274)
T ss_dssp ECTTCEEBTTCEECTTCEECS-EEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCS-SCCEECTTC
T ss_pred eCCCceeccCcEECCCcEEee-eEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCC-CCcEEecCc
Confidence 333333333444444443322 3332 34445555555555555 3467777777777777665333333 336777777
Q ss_pred EECCCcEE-------cceEEcCCcEEcccC
Q 015259 382 GVEDEVVV-------TNSIVLPNKTLNVSV 404 (410)
Q Consensus 382 ~i~~~~~v-------~~~~v~~~~~v~~~~ 404 (410)
.||+++.+ ++++|++|++|++++
T Consensus 183 ~IGa~s~v~egv~Vg~~avi~~gv~i~~~t 212 (274)
T d3tdta_ 183 FIGARSEVVEGVIVEEGSVISMGVYLGQST 212 (274)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred EeccCceEecCEEecCceEeccceEEeccc
Confidence 77777776 677888888887753
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.15 E-value=3.1e-10 Score=98.41 Aligned_cols=170 Identities=15% Similarity=0.109 Sum_probs=105.8
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCc
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRI 78 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~ 78 (410)
|.++-.|||+|.| .++|+ | .|+|++++|+|||+|+|+.+.+ |+|.+ . .+.+.+.++. ++.
T Consensus 1 m~~~~iaiIpar~--~S~R~-p-----~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~t-d-~~~i~~i~~~----~~~ 66 (225)
T d1eyra_ 1 MEKQNIAVILARQ--NSKGL-P-----LKNLRKMNGISLLGHTINAAISSKCFDRIIVST-D-GGLIAEEAKN----FGV 66 (225)
T ss_dssp CCCEEEEEEECCS--CCSSS-T-----TGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEE-S-CHHHHHHHHH----TTC
T ss_pred CCCCEEEEEccCC--CCcCC-C-----CccccccCCeEHHHHHHHHHHHcCCCceEEEee-c-cchhhhhhhh----hcc
Confidence 4456778999999 88898 5 4999999999999999999887 44444 2 3455555543 444
Q ss_pred cEEEeeC---CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--CChHHHHHHHHhcCCceEEEEEecCcccccccc
Q 015259 79 PVRYLRE---DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 79 ~i~~i~~---~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (410)
.+..... ....++...+..+.+.+.. ..+.++.+.||.++- .++..+++.+.+.+.+..+.+... .... +.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~--~~~~-~~ 142 (225)
T d1eyra_ 67 EVVLRPAELASDTASSISGVIHALETIGS-NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPM--EHHP-LK 142 (225)
T ss_dssp EEEECCHHHHSTTCCHHHHHHHHHHHHTC-CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEEC--SSCT-TS
T ss_pred eeeeeccccccccccchhhcccccccccc-ccceEEEeeccccccccccccccceeeccccccccceeecc--cccc-cc
Confidence 3322221 2334455666666666642 246788999999863 458888888777766655554443 2222 33
Q ss_pred eEEEcCCCCcEEEEecCCC-------CccccceeeeEEEEcHHHHHH
Q 015259 154 ELVADPDTNELLHYTEKPE-------TFVSDLINCGVYVFTPDIFNA 193 (410)
Q Consensus 154 ~v~~d~~~~~v~~i~ekp~-------~~~~~l~~~Giy~~~~~~~~~ 193 (410)
.+... +++.+..+..... .......+.++|+++.+.+..
T Consensus 143 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~iy~~~~~~l~~ 188 (225)
T d1eyra_ 143 TLLQI-NNGEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIA 188 (225)
T ss_dssp CEEEC-SSSCEEESSCGGGGTSCGGGSCCEEEEEEEEEEEEHHHHHH
T ss_pred ccccc-ccccccccccccccccccccCcceeeecceeEEeeHHHHHH
Confidence 33333 3455554433211 112234567899999887643
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=99.15 E-value=3.9e-11 Score=102.51 Aligned_cols=116 Identities=15% Similarity=0.242 Sum_probs=82.2
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
++.+|||||| .|+||+. +.||.|++++|+|||+|+++.+.+ |+|++.. .+ +++. +...+.
T Consensus 1 ~is~IILAaG--~g~Rmg~---~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~-~~----~~~~----~~~~~~ 66 (205)
T d1w55a1 1 EMSLIMLAAG--NSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSN-IT----YMKK----FTKNYE 66 (205)
T ss_dssp CEEEEEECCS--CCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESC-HH----HHHT----TCSSSE
T ss_pred CeEEEEeCCc--cCeeCCc---CCCceeEEECCEEHHHHHHHHHHhhcccccccccccc-cc----cccc----cccccc
Confidence 3679999999 9999986 789999999999999999999875 6555542 22 2222 223455
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHHhcCCceEEEEEec
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHRNYGGMGTILVIKV 144 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~~~~~~~~l~~~~~ 144 (410)
++. .+.+..+|++.+++.++ .+.+++..||.++ + ..+.++++.+.+ .++.+.+.+.
T Consensus 67 ~v~--Gg~~r~~Sv~~gl~~~~---~~~VlIhd~~rP~i~~~~i~~li~~~~~--~~~~i~~~~~ 124 (205)
T d1w55a1 67 FIE--GGDTRAESLKKALELID---SEFVMVSDVARVLVSKNLFDRLIENLDK--ADCITPALKV 124 (205)
T ss_dssp EEE--CCSSHHHHHHHHHTTCC---SSEEEEEETTCTTCCHHHHHHHHTTGGG--CSEEEEEECC
T ss_pred ccc--cccchhhhhhhhhhhhh---hcceeeeccCcccCcHHHHHHHHhhhhc--cccccccccc
Confidence 554 33446788999888885 4678889999985 3 337787776543 3445555544
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.13 E-value=1.4e-10 Score=92.30 Aligned_cols=70 Identities=16% Similarity=0.268 Sum_probs=58.2
Q ss_pred cEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCC-------------------CEECCCcEEccCCCC
Q 015259 308 AKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWK-------------------SSIGRWSRVQAEGDF 368 (410)
Q Consensus 308 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~~~ 368 (410)
+.+. ++.||++|.|+ ++.|.+|+||++|.|++++.|++++++++ +.||++|.|.+
T Consensus 10 ~~i~-~s~Ig~g~~I~-~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~---- 83 (135)
T d1yp2a1 10 ADVT-DSVIGEGCVIK-NCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKR---- 83 (135)
T ss_dssp EEEE-EEEECTTCEEE-EEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEES----
T ss_pred CEEE-eCEECCCCEEe-CCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEecc----
Confidence 4443 68888888885 67788999999999999999998877765 57888888875
Q ss_pred CcceeeeEECCCCEECCCcEE
Q 015259 369 NAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v 389 (410)
++|+++|.||+|+++
T Consensus 84 ------~iIg~~~~IG~g~~i 98 (135)
T d1yp2a1 84 ------AIIDKNARIGDNVKI 98 (135)
T ss_dssp ------EEECTTCEECTTCEE
T ss_pred ------ceecCCCEECCCcEE
Confidence 899999999999998
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=99.10 E-value=8e-12 Score=107.02 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=18.0
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCcc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEI 408 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~ 408 (410)
++||++|+||.+++| .+|+|++|++|..++++..
T Consensus 114 v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~~~ 154 (203)
T d1mr7a_ 114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYM 154 (203)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTE
T ss_pred eEECCEEEECCceeEEeEEEEcCCCEEecCeEEeeeCCCCE
Confidence 444444444444444 4556666666666665544
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=8.3e-10 Score=94.11 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=40.9
Q ss_pred eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcccCCC
Q 015259 348 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVHQ 406 (410)
Q Consensus 348 ~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~~~~ 406 (410)
++|+++|++|.++.|.++ +.||+++.|++++++.+.+ .|++.+-..+|.
T Consensus 144 ~~Ig~~v~iG~~~~I~~~---------v~IG~~s~IgagsvV~kdV-p~~si~vg~~~~ 192 (201)
T d2oi6a1 144 TIIGDDVFVGSDTQLVAP---------VTVGKGATIAAGTTVTRNV-GENALAISRVPQ 192 (201)
T ss_dssp EEECTTCEECTTCEEESS---------EEECTTCEECTTCEECSCB-CTTCEECCCCCC
T ss_pred cEeCCcEEEeEeeeEcCC---------cEECCCCEECCCCEEeeec-CCCCEEEecccc
Confidence 688889999999988888 9999999999999997765 888875555554
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=99.03 E-value=5.6e-10 Score=97.42 Aligned_cols=93 Identities=22% Similarity=0.236 Sum_probs=61.3
Q ss_pred eEECCCCEECCCcEEC--CCcEECCCcEECCCCEEeeeEECCCCEECCCCEE---EeeEECCCCEECCCcEEccCCCCCc
Q 015259 296 VYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLISCIILDGVEIMENAVV---TNAIVGWKSSIGRWSRVQAEGDFNA 370 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i---~~~~i~~~~~i~~~~~i~~~~~~~~ 370 (410)
+-|++++.|++++.|. .+++||+++.||+++.| ..+++++..... ...+|+++|.||.+++|.++
T Consensus 138 ~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i-----~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~----- 207 (241)
T d1ssqa_ 138 VDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSI-----LQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGN----- 207 (241)
T ss_dssp CEECTTCEECSSCEESSCTTCEECTTCEECTTCEE-----CTTCEEECCSSSCSSCSCEECTTCEECTTCEEESS-----
T ss_pred eccccCCEEccCcccCccceEEEeccceecCCeee-----cccccccccccCCCCCCCccCCCeEECCCCEEcCC-----
Confidence 3444444444444443 25566666666555555 333333322111 25789999999999999998
Q ss_pred ceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 371 KLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 371 ~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
..||++++||+|++|.+. |.+++++...
T Consensus 208 ----v~IG~~a~IgAgsvV~kd-Vp~~~vv~G~ 235 (241)
T d1ssqa_ 208 ----IEVGKYAKIGANSVVLNP-VPEYATAAGV 235 (241)
T ss_dssp ----CEECTTCEECTTCEECSC-BCTTCEEETT
T ss_pred ----cEECCCCEECCCCEECCC-CCCCCEEEec
Confidence 999999999999999766 5777776543
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=99.02 E-value=8.7e-11 Score=100.42 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=60.0
Q ss_pred ECCCcEECCCcEECCCcEECCCCEEe---eeEECCCCEECC---------------CCEEE-eeEECCCCEECCCcEEcc
Q 015259 304 IHPTAKIGPNVSISANARIGAGVRLI---SCIILDGVEIME---------------NAVVT-NAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 304 i~~~~~i~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~---------------~~~i~-~~~i~~~~~i~~~~~i~~ 364 (410)
+++.+.|++++.||++|.|+++|.|. ...+++++.+.. ++.+. .++|+++|+||.+|.|.+
T Consensus 51 i~~~~~I~~~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~ 130 (203)
T d1mr7a_ 51 LYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMP 130 (203)
T ss_dssp ESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECT
T ss_pred EeeeCEECCccEECCCeEECCCCcEeeecCcEeccCceEeeeeecccccCcccccccccCccCeEECCEEEECCceeEEe
Confidence 33444444556666666666666653 222333332211 11122 588999999999999999
Q ss_pred CCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 365 EGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 365 ~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
+ +.||++|.|+++++|.+. |.|++++..+
T Consensus 131 g---------v~IG~~~~IgagSvV~kd-v~~~~i~~G~ 159 (203)
T d1mr7a_ 131 G---------VKIGDGAIVAANSVVVKD-IAPYMLAGGN 159 (203)
T ss_dssp T---------CEECTTCEECTTCEECSC-BCTTEEEEET
T ss_pred E---------EEEcCCCEEecCeEEeee-CCCCEEEEEe
Confidence 8 999999999999999765 5788777553
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.98 E-value=2.9e-09 Score=88.38 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=19.0
Q ss_pred eeEECCCCEECCCCEEE----eeEECCCCEECCCcEEcc
Q 015259 330 SCIILDGVEIMENAVVT----NAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 330 ~~~i~~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~ 364 (410)
+++||++|.|+++|+|. ..++++++.++..+.+..
T Consensus 28 ~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~ 66 (173)
T d1v3wa_ 28 DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHT 66 (173)
T ss_dssp EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEEC
T ss_pred ceEECCCCEECCCcccccccccccccccccccccccccc
Confidence 34445555555555553 345666666666665543
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.95 E-value=2.9e-09 Score=92.33 Aligned_cols=120 Identities=15% Similarity=0.222 Sum_probs=79.4
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
++.|||+|.| .++|| | -|+|++++|+|||+|+++.+.+ |+|.+ . .+.+.+.... ++..+.
T Consensus 3 ki~aiIpaR~--~S~Rl-p-----~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivst-d-~~~i~~~~~~----~~~~~~ 68 (228)
T d1qwja_ 3 HLAALVLARG--GSKGI-P-----LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVST-D-HDEIENVAKQ----FGAQVH 68 (228)
T ss_dssp CEEEEEECCS--CCSSS-S-----CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEE-S-CHHHHHHHHH----TTCEEE
T ss_pred CEEEEeccCC--CCCCC-C-----CcchhhhCCeeHHHHHHHHHHhcCCcceEEEec-c-hhhhhhhhhh----cCcccc
Confidence 7999999999 99999 5 4999999999999999999887 45544 3 3344444433 444333
Q ss_pred EeeCCC---CCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEe
Q 015259 82 YLREDK---PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIK 143 (410)
Q Consensus 82 ~i~~~~---~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~ 143 (410)
...... .....+.+..+.+... ..+.++++.+|.++ ..++.++++.+.+.+.+..+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~ 133 (228)
T d1qwja_ 69 RRSSETSKDSSTSLDAIVEFLNYHN--EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVR 133 (228)
T ss_dssp ECCGGGSSTTCCHHHHHHHHHTTCT--TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred ccccccccccchhhhhhhhcccccc--ccceeeeecccccccCchhhhhhhhhhhccCccccccccc
Confidence 322221 2233344443333322 24667888899986 345899999888877776555544
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.84 E-value=8.9e-09 Score=89.64 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=11.7
Q ss_pred cceEEcCCcEEcccCCCccc
Q 015259 390 TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 390 ~~~~v~~~~~v~~~~~~~~~ 409 (410)
.+++||+|++|.+++|+..+
T Consensus 212 ~~a~IgAgsvV~kdVp~~~v 231 (241)
T d1ssqa_ 212 KYAKIGANSVVLNPVPEYAT 231 (241)
T ss_dssp TTCEECTTCEECSCBCTTCE
T ss_pred CCCEECCCCEECCCCCCCCE
Confidence 45566666666666665543
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.83 E-value=2.1e-09 Score=91.80 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=23.8
Q ss_pred eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc
Q 015259 347 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 347 ~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
+++|+++|+||.+|.|.++ +.||++|+||++++|.
T Consensus 108 ~v~Igd~v~IG~~s~I~~g---------v~IG~~~vIgagSvVt 142 (208)
T d1xata_ 108 DTLIGHEVWIGTEAMFMPG---------VRVGHGAIIGSRALVT 142 (208)
T ss_dssp CEEECTTCEECTTCEECTT---------CEECTTCEECTTCEEC
T ss_pred CEEEcCCeEECccccccCC---------eEeCCCCEEeCceEEe
Confidence 4667777777777777666 6777777777666664
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.81 E-value=8e-08 Score=88.68 Aligned_cols=182 Identities=15% Similarity=0.187 Sum_probs=123.1
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccC-CccchhhhHhhccc----------EEEe-cccchHHHHHHHHhhcc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR----------IYLV-GFYEEREFALYVSSISN 74 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~-g~pli~~~l~~l~~----------i~vv-~~~~~~~i~~~~~~~~~ 74 (410)
.++.+|+|||| .||||+- +.||+++|++ |+++++..++.+.. .+|- ....++...+++++. .
T Consensus 73 ~kvavv~LaGG--~GTRLG~---~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~-~ 146 (378)
T d2icya2 73 DKLVVLKLNGG--LGTTMGC---TGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKY-T 146 (378)
T ss_dssp TTEEEEEEECC--BSGGGTC---CSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGG-T
T ss_pred CCEEEEEecCC--cccccCC---CCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHh-c
Confidence 57899999999 9999975 8899999996 77999999999875 4444 444567788888874 4
Q ss_pred cCCccEEEeeCC------------------------CCCCcHHHHHH-----hHHHhcccCCCcEEEEcCCcccCCChHH
Q 015259 75 ELRIPVRYLRED------------------------KPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCCSFPLPE 125 (410)
Q Consensus 75 ~~~~~i~~i~~~------------------------~~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~i~~~~l~~ 125 (410)
.++..+.+..|. .+.|.++.+.. .++.+.+..-+++.+.+.|.+....-..
T Consensus 147 ~fg~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~ 226 (378)
T d2icya2 147 NSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLT 226 (378)
T ss_dssp TSSSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHH
T ss_pred cCCCceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchH
Confidence 455555543210 14577765543 2444544556899999999987544567
Q ss_pred HHHHHHhcCCceEEEEEecCcccccccceE-EEcCCCCcEEEEecCCCC--------ccccceeeeEEEEcHHHHHHhhh
Q 015259 126 MLDAHRNYGGMGTILVIKVSAESASQFGEL-VADPDTNELLHYTEKPET--------FVSDLINCGVYVFTPDIFNAIQG 196 (410)
Q Consensus 126 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v-~~d~~~~~v~~i~ekp~~--------~~~~l~~~Giy~~~~~~~~~l~~ 196 (410)
++-.|.++++++++-+.+....+. .-|.+ ..+ ..-+++.+.+.|.+ ....+.+++.++|+-..++.+.+
T Consensus 227 ~lG~~~~~~~~~~~kvv~Kt~~de-k~G~l~~~d-g~~~vvEyse~p~e~~~~~~~~~~~~~~N~nn~~~~l~~l~~~~~ 304 (378)
T d2icya2 227 ILKHLIQNKNEYCMEVTPKTLADV-KGGTLISYE-GKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVE 304 (378)
T ss_dssp HHHHHHHHTCSEEEEEEECCTTCC-SSCEEEEET-TEEEEECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHHHHHHHHH
T ss_pred HHHHHHhcCCcceeEEEecCCCCC-ceeEEEEEC-CceeeeehhcCChhHHhhhcCCcCcceeeeeeeeeeHHHHHHHHh
Confidence 888888888888877766422222 23443 333 23356666666542 12335689999999988876644
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.68 E-value=2e-07 Score=84.96 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=57.4
Q ss_pred CcEEcc-CeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEE------EeeEECCCCEECCCcE
Q 015259 289 NATIIG-DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV------TNAIVGWKSSIGRWSR 361 (410)
Q Consensus 289 ~~~i~~-~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i------~~~~i~~~~~i~~~~~ 361 (410)
.+++.+ ++++.+++.|+.++.|.+++.|+.+++|++++.|+++.|.+++.|+++|.| .++.+..++.+.+++.
T Consensus 56 ~~wv~~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~ 135 (320)
T d2f9ca1 56 DCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSE 135 (320)
T ss_dssp SCEECSTTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCE
T ss_pred CCEEECCCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcE
Confidence 344432 355555555555555555555555555555555544444444444444444 4555666666666666
Q ss_pred EccCCC------------CCcceeeeEECCCCEECCCcEEcceEEcC
Q 015259 362 VQAEGD------------FNAKLGITILGEAVGVEDEVVVTNSIVLP 396 (410)
Q Consensus 362 i~~~~~------------~~~~~~~~~i~~~~~i~~~~~v~~~~v~~ 396 (410)
+.+... .....+.+.|.+++.|+.++.+....+..
T Consensus 136 i~g~~~~~~~~~~~~~i~~~~~~~~~~I~~~~~Iggna~i~~~~i~~ 182 (320)
T d2f9ca1 136 ILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEH 182 (320)
T ss_dssp ECCCCCCSSSTTCCCEECSSCEEESCEECSSCEECSSCEEESCEECS
T ss_pred EECCCceeecccCcceecccceeeeeEEeeeeeeCCCccccceeecc
Confidence 654211 12233446777777777777774444333
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=98.49 E-value=4.2e-07 Score=82.70 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=20.7
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI 329 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~ 329 (410)
++.+.+.+.|++++.|+++++|+ ++.|..+++|++++.|.
T Consensus 75 na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~ 114 (320)
T d2f9ca1 75 NARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQ 114 (320)
T ss_dssp TCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEE
T ss_pred CCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeec
Confidence 44555555555555555555543 44455555555555554
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.32 E-value=1.5e-07 Score=79.98 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=25.2
Q ss_pred eEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
|.||.+|.|.++++| .+|+|++|++|+.++|+.-+
T Consensus 115 v~IG~~s~I~~gv~IG~~~vIgagSvVtkdvp~~si 150 (208)
T d1xata_ 115 VWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAI 150 (208)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred eEECccccccCCeEeCCCCEEeCceEEeecCCcCcE
Confidence 555555555555666 68888999999999887654
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=97.75 E-value=0.00062 Score=64.32 Aligned_cols=180 Identities=14% Similarity=0.227 Sum_probs=112.2
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCcccccc---CCccchhhhHhhccc----------------EEE-ecccchHHHH
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR----------------IYL-VGFYEEREFA 66 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi---~g~pli~~~l~~l~~----------------i~v-v~~~~~~~i~ 66 (410)
.++.+|+|||| .|+||+- ..||.++|+ .++++++..++.+.. .+| .....++...
T Consensus 101 gkvavvllaGG--~GTRLG~---~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~ 175 (501)
T d1jv1a_ 101 NKVAVLLLAGG--QGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTK 175 (501)
T ss_dssp TCEEEEEECCC--CCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHH
T ss_pred CCEEEEEECCC--ccccCCC---CCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHH
Confidence 36889999999 9999976 789999998 578999987776532 344 4445567888
Q ss_pred HHHHhhcccCCc---cEEEeeCC---------------------CCCCcHHHHHH-----hHHHhcccCCCcEEEEcCCc
Q 015259 67 LYVSSISNELRI---PVRYLRED---------------------KPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDV 117 (410)
Q Consensus 67 ~~~~~~~~~~~~---~i~~i~~~---------------------~~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~ 117 (410)
+++++. ..+|. .+.+..|. .+.|.++.+.. .++.+.+..-+++.+...|.
T Consensus 176 ~~l~~~-~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN 254 (501)
T d1jv1a_ 176 EFFTKH-KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDN 254 (501)
T ss_dssp HHHHHT-GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTB
T ss_pred HHHHhc-cccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCC
Confidence 888874 33443 23332211 24466554432 23344444467899999998
Q ss_pred cc-CCChHHHHHHHHhcCCceEEEEEecCccccc-ccceEEEcCCCCc--EEEEecCCC----------CccccceeeeE
Q 015259 118 CC-SFPLPEMLDAHRNYGGMGTILVIKVSAESAS-QFGELVADPDTNE--LLHYTEKPE----------TFVSDLINCGV 183 (410)
Q Consensus 118 i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~~d~~~~~--v~~i~ekp~----------~~~~~l~~~Gi 183 (410)
+. ..--..+|-.+...++++.+-+.+. ..+. .-|++... +++ ++.+.+-|. .......+++.
T Consensus 255 ~l~~~~Dp~~lG~~~~~~~~~~~kvv~k--~~~~e~~G~l~~~--dg~~~vvEysel~~~~~~~~~~~g~l~f~~~Ni~~ 330 (501)
T d1jv1a_ 255 ILVKVADPRFIGFCIQKGADCGAKVVEK--TNPTEPVGVVCRV--DGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIAN 330 (501)
T ss_dssp TTCCTTCHHHHHHHHHTTCSEEEEEEEC--CSTTCSCCEEEEE--TTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEE
T ss_pred ccccccCHHHHHHHHhcccceeEEEEEc--CCCCcccceEEEE--CCeEEEEEeccCCHHHHhhccCCCcccccccceeh
Confidence 74 3334567788888888877776654 2222 34554432 343 444433321 11233467888
Q ss_pred EEEcHHHHHHhhh
Q 015259 184 YVFTPDIFNAIQG 196 (410)
Q Consensus 184 y~~~~~~~~~l~~ 196 (410)
++|+-+.++.+.+
T Consensus 331 ~~fsl~fl~~~~~ 343 (501)
T d1jv1a_ 331 HFFTVPFLRDVVN 343 (501)
T ss_dssp EEEEHHHHHHHHH
T ss_pred eeeEHHHHHHHHH
Confidence 9999988766543
|
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.14 E-value=2.5 Score=36.24 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=61.4
Q ss_pred cccCCc--cchhhhHhhccc---------EEEe--cccch---HHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhH
Q 015259 36 FPLGGQ--PMVHHPISACKR---------IYLV--GFYEE---REFALYVSSISNELRIPVRYLREDKPHGSAGALYNFR 99 (410)
Q Consensus 36 lpi~g~--pli~~~l~~l~~---------i~vv--~~~~~---~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~ 99 (410)
+|.-|. ..|..+|+.+.+ |+|| ++.+. +.+.++++ .+..++.++......|.+.+.-.+.
T Consensus 28 Ip~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~----~~~~~i~vi~~~~n~G~~~a~N~Gi 103 (328)
T d1xhba2 28 IVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVK----KLKVPVHVIRMEQRSGLIRARLKGA 103 (328)
T ss_dssp EEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHH----SSSSCEEEEECSSCCCHHHHHHHHH
T ss_pred EeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHH----hcCCCeEEEEecccccchHHHHHHH
Confidence 344464 256777776543 5666 33332 22344443 3345688887777888888888887
Q ss_pred HHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCce
Q 015259 100 DLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMG 137 (410)
Q Consensus 100 ~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~ 137 (410)
+... .+.++++++|.+...+ +..+++...+.+..+
T Consensus 104 ~~a~---gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~ 139 (328)
T d1xhba2 104 AVSR---GQVITFLDAHCECTAGWLEPLLARIKHDRRTV 139 (328)
T ss_dssp HHCC---SSEEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred Hhhh---cceeeecCcccccChhHHHHHHHHHhcCCCeE
Confidence 7765 4788899999987555 888888776655543
|