Citrus Sinensis ID: 015270

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
MDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAARAVQVAEKRLSRDKWPEYYDTKRARFIGKQAQLFQTWSIAGYLVSKILLADPSAAKILTTEEDSELVNAFSCMISANPRRKRGRKNLNQTYII
ccccccccccccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccccccccHHHHHHccccccEEEEEEcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccEEcccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccccccccc
cccccccccccccEEEEEEEccccccccccEEEcccccHHHEcccccccHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHccccccccEEEccccccHccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcEEcHHHHHHHEccccHHccHHHHcccccccccccHHHHHHccccccEEEEccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHcccccccEccHHHHHHHHHHHHHHHHHHHHHHcHHHccEEEccccHHHHHHHHHHHccccccccccHHcccEEEc
mdchspgqglmpasfkvrtvpldgddsateevldpdfgeaaigrvapvdsgLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLadgfdmfptllvtdgscmidrrmgihghpLEIQALFYSALLCARemlapedgsADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRykteeysydavnkfniypdqippwlvewmpnkggylignlqpahmdfRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADmplkicypalegqewqiitgsdpkntpwsyhnagswptLLWQFTVACIKMNRPEIAARAVQVAEKRlsrdkwpeyydtKRARFIGKQAQLFQTWSIAGYLVSKIlladpsaakiltteeDSELVNAFSCmisanprrkrgrknlnqtyii
mdchspgqglmpasfKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAARAVQVaekrlsrdkwpeyyDTKRARFIGKQAQLFQTWSIAGYLVSKILLADPSAAKILTTEEDSELVNAFScmisanprrkrgrknlnqtyii
MDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAARAVQVAEKRLSRDKWPEYYDTKRARFIGKQAQLFQTWSIAGYLVSKILLADPSAAKILTTEEDSELVNAFSCMISANPRRKRGRKNLNQTYII
**********************************PDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAARAVQVAEKRLSRDKWPEYYDTKRARFIGKQAQLFQTWSIAGYLVSKILLADPSAAKILTTEEDSELVNAFSCMI*******************
***HSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAARAVQVAEKRLSRDKWPEYYDTKRARFIGKQAQLFQTWSIAGYLVSKILLADPSAAKILTTEEDSELVNA*********************YII
********GLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAARAVQVAEKRLSRDKWPEYYDTKRARFIGKQAQLFQTWSIAGYLVSKILLADPSAAKILTTEEDSELVNAFSCMISANPRRKRGRKNLNQTYII
*DCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAARAVQVAEKRLSRDKWPEYYDTKRARFIGKQAQLFQTWSIAGYLVSKILLADPSAAKILTTEEDSELVNAFSCMISAN****************
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MDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAARAVQVAEKRLSRDKWPEYYDTKRARFIGKQAQLFQTWSIAGYLVSKILLADPSAAKILTTEEDSELVNAFSCMISANPRRKRGRKNLNQTYII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
399138444 650 neutral invertase [Litchi chinensis] 1.0 0.630 0.934 0.0
359486945 714 PREDICTED: uncharacterized protein LOC10 1.0 0.574 0.919 0.0
255582448 663 beta-fructofuranosidase, putative [Ricin 1.0 0.618 0.924 0.0
384371330 663 neutral/alkaline invertase [Manihot escu 1.0 0.618 0.919 0.0
224100641486 predicted protein [Populus trichocarpa] 1.0 0.843 0.917 0.0
357519691 645 Alkaline/neutral invertase [Medicago tru 0.992 0.631 0.892 0.0
449465541 638 PREDICTED: uncharacterized protein LOC10 1.0 0.642 0.887 0.0
356525551 652 PREDICTED: uncharacterized protein LOC10 0.992 0.624 0.890 0.0
224113485487 predicted protein [Populus trichocarpa] 1.0 0.841 0.900 0.0
356512768 652 PREDICTED: uncharacterized protein LOC10 0.992 0.624 0.892 0.0
>gi|399138444|gb|AFP23358.1| neutral invertase [Litchi chinensis] Back     alignment and taxonomy information
 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/410 (93%), Positives = 400/410 (97%)

Query: 1   MDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRA 60
           MDCHSPGQGLMPASFKV TVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRA
Sbjct: 241 MDCHSPGQGLMPASFKVCTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRA 300

Query: 61  YGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEI 120
           YGKCSGDL VQER+DVQTGIKMIL+LCLADGFDMFPTLLVTDGSCM+DRRMGIHGHPLEI
Sbjct: 301 YGKCSGDLSVQERVDVQTGIKMILRLCLADGFDMFPTLLVTDGSCMVDRRMGIHGHPLEI 360

Query: 121 QALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEE 180
           QALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEE
Sbjct: 361 QALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEE 420

Query: 181 YSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATR 240
           YSYDAVNKFNIYPDQI PWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGN+WSIV+ LAT 
Sbjct: 421 YSYDAVNKFNIYPDQISPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNLWSIVSSLATT 480

Query: 241 DQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLL 300
           DQSHAILDL++ KWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLL
Sbjct: 481 DQSHAILDLIDTKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLL 540

Query: 301 WQFTVACIKMNRPEIAARAVQVAEKRLSRDKWPEYYDTKRARFIGKQAQLFQTWSIAGYL 360
           WQ TVACIKMNRPEI+ARAVQVAE+++SRDKWPEYYDTKRARFIGKQA+LFQTWSIAGYL
Sbjct: 541 WQLTVACIKMNRPEISARAVQVAERQISRDKWPEYYDTKRARFIGKQARLFQTWSIAGYL 600

Query: 361 VSKILLADPSAAKILTTEEDSELVNAFSCMISANPRRKRGRKNLNQTYII 410
           V+K+LLADPSAAKIL TEEDSELVN+FSCMISANPRRKRGRK+  QTYI+
Sbjct: 601 VAKLLLADPSAAKILITEEDSELVNSFSCMISANPRRKRGRKDSKQTYIV 650

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359486945|ref|XP_002264960.2| PREDICTED: uncharacterized protein LOC100248981 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255582448|ref|XP_002532011.1| beta-fructofuranosidase, putative [Ricinus communis] gi|223528323|gb|EEF30366.1| beta-fructofuranosidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|384371330|gb|AFH77954.1| neutral/alkaline invertase [Manihot esculenta] Back     alignment and taxonomy information
>gi|224100641|ref|XP_002311958.1| predicted protein [Populus trichocarpa] gi|222851778|gb|EEE89325.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357519691|ref|XP_003630134.1| Alkaline/neutral invertase [Medicago truncatula] gi|355524156|gb|AET04610.1| Alkaline/neutral invertase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449465541|ref|XP_004150486.1| PREDICTED: uncharacterized protein LOC101217778 [Cucumis sativus] gi|449516272|ref|XP_004165171.1| PREDICTED: uncharacterized protein LOC101226610 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356525551|ref|XP_003531388.1| PREDICTED: uncharacterized protein LOC100788719 [Glycine max] Back     alignment and taxonomy information
>gi|224113485|ref|XP_002316508.1| predicted protein [Populus trichocarpa] gi|222865548|gb|EEF02679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512768|ref|XP_003525088.1| PREDICTED: uncharacterized protein LOC100813457 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
TAIR|locus:2171112617 INV-E "alkaline/neutral invert 1.0 0.664 0.853 2.5e-200
TAIR|locus:2027600616 A/N-InvA "alkaline/neutral inv 0.973 0.647 0.735 9.1e-171
TAIR|locus:2084329664 A/N-InvC "alkaline/neutral inv 0.973 0.600 0.707 1.4e-165
TAIR|locus:2074434659 INVH "invertase H" [Arabidopsi 0.973 0.605 0.714 7.3e-162
TAIR|locus:2014676551 CINV1 "cytosolic invertase 1" 0.9 0.669 0.617 8.4e-129
TAIR|locus:2133737558 CINV2 "cytosolic invertase 2" 0.907 0.666 0.596 1.7e-128
TAIR|locus:2116870571 A/N-InvB "alkaline/neutral inv 0.907 0.651 0.578 8.9e-125
TAIR|locus:2199690534 A/N-InvD "alkaline/neutral inv 0.904 0.694 0.590 6.3e-124
TAIR|locus:2016064499 A/N-InvF "alkaline/neutral inv 0.907 0.745 0.580 1.9e-122
TAIR|locus:2171112 INV-E "alkaline/neutral invertase E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1939 (687.6 bits), Expect = 2.5e-200, P = 2.5e-200
 Identities = 350/410 (85%), Positives = 388/410 (94%)

Query:     1 MDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRA 60
             MDCHSPGQGLMP SFKV+TVPLDGDDS TEEVLDPDFGEAAIGRVAPVDSGLWWIILLRA
Sbjct:   208 MDCHSPGQGLMPCSFKVKTVPLDGDDSMTEEVLDPDFGEAAIGRVAPVDSGLWWIILLRA 267

Query:    61 YGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEI 120
             YGKC+GDL VQER+DVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEI
Sbjct:   268 YGKCTGDLSVQERVDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEI 327

Query:   121 QALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEE 180
             QALFYSAL+CAREML PEDGSADLIRALNNRLVAL+FHIREYYW+DL+K+NEIYRY+TEE
Sbjct:   328 QALFYSALVCAREMLTPEDGSADLIRALNNRLVALNFHIREYYWLDLKKINEIYRYQTEE 387

Query:   181 YSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATR 240
             YSYDAVNKFNIYPDQIP WLV++MPN+GGYLIGNLQPAHMDFRFF+LGN+WSIV+ LA+ 
Sbjct:   388 YSYDAVNKFNIYPDQIPSWLVDFMPNRGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLASN 447

Query:   241 DQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLL 300
             DQSHAILD +EAKWA+LVADMPLKICYPA+EG+EW+IITGSDPKNTPWSYHN G+WPTLL
Sbjct:   448 DQSHAILDFIEAKWAELVADMPLKICYPAMEGEEWRIITGSDPKNTPWSYHNGGAWPTLL 507

Query:   301 WQFTVACIKMNRPEIAARAVQVAEKRLSRDKWPEYYDTKRARFIGKQAQLFQTWSIAGYL 360
             WQ TVA IKM RPEIA +AV++AE+R+S DKWPEYYDTKRARFIGKQA+L+QTWSIAGYL
Sbjct:   508 WQLTVASIKMGRPEIAEKAVELAERRISLDKWPEYYDTKRARFIGKQARLYQTWSIAGYL 567

Query:   361 VSKILLADPSAAKILTTEEDSELVNAFSCMISANPRRKRGRKNLNQTYII 410
             V+K+LLA+P+AAK LT+EEDS+L NAFSCM+SANPRR RG K   Q +I+
Sbjct:   568 VAKLLLANPAAAKFLTSEEDSDLRNAFSCMLSANPRRTRGPKKAQQPFIV 617
GO:0003824 "catalytic activity" evidence=IEA
GO:0004564 "beta-fructofuranosidase activity" evidence=ISS
GO:0004575 "sucrose alpha-glucosidase activity" evidence=IDA;IMP
GO:0005982 "starch metabolic process" evidence=IMP
GO:0009507 "chloroplast" evidence=IDA
GO:0005987 "sucrose catabolic process" evidence=IDA
GO:0048825 "cotyledon development" evidence=IMP
TAIR|locus:2027600 A/N-InvA "alkaline/neutral invertase A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084329 A/N-InvC "alkaline/neutral invertase C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074434 INVH "invertase H" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014676 CINV1 "cytosolic invertase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133737 CINV2 "cytosolic invertase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116870 A/N-InvB "alkaline/neutral invertase B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199690 A/N-InvD "alkaline/neutral invertase D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016064 A/N-InvF "alkaline/neutral invertase F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.25LOW CONFIDENCE prediction!
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
PLN02703618 PLN02703, PLN02703, beta-fructofuranosidase 0.0
pfam12899437 pfam12899, Glyco_hydro_100, Alkaline and neutral i 0.0
PLN03005550 PLN03005, PLN03005, beta-fructofuranosidase 0.0
PLN02973571 PLN02973, PLN02973, beta-fructofuranosidase 1e-170
>gnl|CDD|178306 PLN02703, PLN02703, beta-fructofuranosidase Back     alignment and domain information 
 Score =  832 bits (2151), Expect = 0.0
 Identities = 352/410 (85%), Positives = 388/410 (94%)

Query: 1   MDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRA 60
           MDCHSPGQGLMP SFKV+TVPLDGDDS TEEVLDPDFGEAAIGRVAPVDSGLWWIILLRA
Sbjct: 209 MDCHSPGQGLMPCSFKVKTVPLDGDDSMTEEVLDPDFGEAAIGRVAPVDSGLWWIILLRA 268

Query: 61  YGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEI 120
           YGKC+GDL VQER+DVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEI
Sbjct: 269 YGKCTGDLSVQERVDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEI 328

Query: 121 QALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEE 180
           QALFYSAL+CAREML PEDGS DLIRALNNRLVAL+FHIREYYW+DL+K+NEIYRY+TEE
Sbjct: 329 QALFYSALVCAREMLTPEDGSVDLIRALNNRLVALNFHIREYYWLDLKKINEIYRYQTEE 388

Query: 181 YSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATR 240
           YSYDAVNKFNIYPDQIP WLV++MPN+GGYLIGNLQPAHMDFRFF+LGN+WSIV+ LAT 
Sbjct: 389 YSYDAVNKFNIYPDQIPSWLVDFMPNRGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLATN 448

Query: 241 DQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLL 300
           DQSHAILDL+EAKWA+LVADMPLKICYPA+EG+EW+IITGSDPKNTPWSYHN G+WPTLL
Sbjct: 449 DQSHAILDLIEAKWAELVADMPLKICYPAMEGEEWRIITGSDPKNTPWSYHNGGAWPTLL 508

Query: 301 WQFTVACIKMNRPEIAARAVQVAEKRLSRDKWPEYYDTKRARFIGKQAQLFQTWSIAGYL 360
           WQ TVA IKM RPEIA +AV++AE+R+S DKWPEYYDTKRARFIGKQA+L+QTWSIAGYL
Sbjct: 509 WQLTVASIKMGRPEIAEKAVELAERRISLDKWPEYYDTKRARFIGKQARLYQTWSIAGYL 568

Query: 361 VSKILLADPSAAKILTTEEDSELVNAFSCMISANPRRKRGRKNLNQTYII 410
           V+K+LLA+P+AAK LT+EEDS+L NAFSCMISANPRR RG K   Q +I+
Sbjct: 569 VAKLLLANPAAAKFLTSEEDSDLRNAFSCMISANPRRTRGPKKAQQPFIV 618

Length = 618
>gnl|CDD|221840 pfam12899, Glyco_hydro_100, Alkaline and neutral invertase Back     alignment and domain information
>gnl|CDD|178582 PLN03005, PLN03005, beta-fructofuranosidase Back     alignment and domain information
>gnl|CDD|178556 PLN02973, PLN02973, beta-fructofuranosidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 410
PLN02703618 beta-fructofuranosidase 100.0
PLN02973571 beta-fructofuranosidase 100.0
PF12899436 Glyco_hydro_100: Alkaline and neutral invertase; I 100.0
PLN03005550 beta-fructofuranosidase 100.0
PF06202370 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR 100.0
TIGR015311464 glyc_debranch glycogen debranching enzymye. glycog 100.0
TIGR01561575 gde_arch glycogen debranching enzyme, archaeal typ 100.0
COG3408641 GDB1 Glycogen debranching enzyme [Carbohydrate tra 100.0
PRK10137786 alpha-glucosidase; Provisional 99.9
KOG36251521 consensus Alpha amylase [Carbohydrate transport an 99.85
TIGR01577616 oligosac_amyl oligosaccharide amylase. The name of 99.64
PRK13271569 treA trehalase; Provisional 99.6
PLN02567554 alpha,alpha-trehalase 99.46
PRK13270549 treF trehalase; Provisional 99.36
PF04685365 DUF608: Protein of unknown function, DUF608; Inter 99.33
PRK13272542 treA trehalase; Provisional 99.31
PF01204512 Trehalase: Trehalase; InterPro: IPR001661 O-Glycos 99.13
PF03200801 Glyco_hydro_63: Mannosyl oligosaccharide glucosida 99.11
COG34591056 Cellobiose phosphorylase [Carbohydrate transport a 99.07
PF05592509 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; Int 98.9
COG3387612 SGA1 Glucoamylase and related glycosyl hydrolases 98.84
COG1626558 TreA Neutral trehalase [Carbohydrate transport and 98.04
KOG2161849 consensus Glucosidase I [Carbohydrate transport an 97.97
TIGR01535648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 97.87
PF06824424 DUF1237: Protein of unknown function (DUF1237); In 97.49
COG4354721 Predicted bile acid beta-glucosidase [Carbohydrate 97.37
KOG2119879 consensus Predicted bile acid beta-glucosidase [Ca 96.45
KOG0602600 consensus Neutral trehalase [Carbohydrate transpor 96.2
PF00723448 Glyco_hydro_15: Glycosyl hydrolases family 15; Int 96.0
COG3538434 Uncharacterized conserved protein [Function unknow 93.8
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 85.19
>PLN02703 beta-fructofuranosidase Back     alignment and domain information 
Probab=100.00  E-value=2.9e-104  Score=812.52  Aligned_cols=410  Identities=86%  Similarity=1.460  Sum_probs=402.0

Q ss_pred             CCCCCCCCCCccceeEeeeccCCCCCCCCcccccccCCccccCCcCCCCcHHHHHHHHHHHHHHhCChhHHhhHHHHHHH
Q 015270            1 MDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGI   80 (410)
Q Consensus         1 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ge~a~~~~~sVDatLWfi~a~~~Y~~~TgD~~f~~~~~l~~al   80 (410)
                      ||+||+++|+|||||||+++|++++++.+||.+++||||.+|+++++|||+|||||+++.|.+.|||.+|.+++.+|++|
T Consensus       209 ld~~q~g~G~mPaSfkv~~~~~~~~~~~~ee~l~aDfGe~AIgRV~pVDS~LWWIIllraY~k~TgD~sf~e~~~~Q~gI  288 (618)
T PLN02703        209 MDCHSPGQGLMPCSFKVKTVPLDGDDSMTEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCTGDLSVQERVDVQTGI  288 (618)
T ss_pred             HHhccCCCCCcCceeeecccccccccccccccccCCcCccceeeeccccchhHHHHHHHHHHHhhccHHHhhhhhHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcCCCCCCceeeeCCCcccccccccCCCceehhHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH
Q 015270           81 KMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIR  160 (410)
Q Consensus        81 ~~i~~~~~~~~f~~~~~ll~~dG~~~~Dr~~~~~G~pVEINALwYnAL~~~~~La~~~~~~~~~~~~l~~~a~~L~~~f~  160 (410)
                      +.|++.|+.++|+++|+++++||++|+||||+++|+|+|||||||.||+++.+|.....+..+.++++..|+.+|+.+++
T Consensus       289 ~liL~LcLa~~Fd~fPtLlVpDgs~miDRrMgv~G~PLEiQaLfy~ALR~a~~~L~~~~~~~e~i~~i~~rl~~L~~hir  368 (618)
T PLN02703        289 KMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALVCAREMLTPEDGSVDLIRALNNRLVALNFHIR  368 (618)
T ss_pred             HHHHHHHccCcCCCCceEeccCCCchhccccCcCCccHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhhhhhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999877655567888999999999999999


Q ss_pred             HhhhhhhhhhhhhhhhcccchhhhhhhhcCCCCCCCCccccccccCCCCccccccCCCccccchhccchhHHHhcCCCCH
Q 015270          161 EYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATR  240 (410)
Q Consensus       161 ~~FW~~~~~~~~~~~~~~e~~~~~~~n~~~~~~~~~~~~l~d~v~~~~~y~~~~~rP~~~d~r~~a~gN~LAl~~~ll~~  240 (410)
                      ++||++.++++++|||+||+|++++.|+|||+|++||+||.||++++|||++|+++|+++|||||++||+||+++|++++
T Consensus       369 ~~yWld~~~ln~iyRykteey~~~A~NkfNi~p~siP~WL~dwlp~~gGYligNv~Pa~mDfRffsLGNlLAILs~Lat~  448 (618)
T PLN02703        369 EYYWLDLKKINEIYRYQTEEYSYDAVNKFNIYPDQIPSWLVDFMPNRGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLATN  448 (618)
T ss_pred             HHHhhcHHHhhHHHhhhhhhcchhhhhhcccCCCCcchHhhhhccccCceeeeeecccccccchhhhhhHHHHHhcCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcCCCCcccCCCcCCCCceeeeCCCCCCCCcccccCCCccchHHHHHHHHHHcCChHHHHHHH
Q 015270          241 DQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAARAV  320 (410)
Q Consensus       241 ~~a~~Vl~~v~~~~~~Lltp~GLRsL~P~~~d~~y~~~y~g~~~~rp~aYHNGtVWP~LlG~y~~A~~r~g~~~~A~~~L  320 (410)
                      +|+++|+++++++|.+|...|||+.|+|++.+++|++.|+++++|.|||||||++||.|+|+|++|++|.|+.+.|++++
T Consensus       449 ~Qs~aIm~lIe~~w~~Lvg~MPlkIcyPaie~~EWRi~TG~DpKN~PWSYHNGGsWP~LlWf~~aA~iK~Gr~~lA~ral  528 (618)
T PLN02703        449 DQSHAILDLIEAKWAELVADMPLKICYPAMEGEEWRIITGSDPKNTPWSYHNGGAWPTLLWQLTVASIKMGRPEIAEKAV  528 (618)
T ss_pred             HHHHHHHHHHHHHHHHHhccCccccccCCcCCccceeeeCcCCCCCCccccCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccCCCCCCCCCCcchHhHHHHHHHHHHHHHhcCCCccccccccccHhHHhhcchhcccCcccccc
Q 015270          321 QVAEKRLSRDKWPEYYDTKRARFIGKQAQLFQTWSIAGYLVSKILLADPSAAKILTTEEDSELVNAFSCMISANPRRKRG  400 (410)
Q Consensus       321 ~~~~~~l~~~~l~ElFdG~~g~~~G~~ac~~QAWSvAe~Lr~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (410)
                      ..++.++..+.|||+|||.+|+++|.+++..|+||+|++|.+.++|++|+++.+|+++|++++++.|+|++++++|+|++
T Consensus       529 ~~ae~rl~~d~WpEYyDGktGr~iGkqar~yQTWSiAGyLlAk~~l~~P~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  608 (618)
T PLN02703        529 ELAERRISLDKWPEYYDTKRARFIGKQARLYQTWSIAGYLVAKLLLANPAAAKFLTSEEDSDLRNAFSCMISANPRRTRG  608 (618)
T ss_pred             HHHHHHhhhccChhhccCCCCcCcceeccccCchHHHHHHHHHHHHhChhhccccccccchhhhhhheeecccCCcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccC
Q 015270          401 RKNLNQTYII  410 (410)
Q Consensus       401 ~~~~~~~~~~  410 (410)
                      |+...|+||+
T Consensus       609 ~~~~~~~~~~  618 (618)
T PLN02703        609 PKKAQQPFIV  618 (618)
T ss_pred             CccccCCccC
Confidence            9999999996

>PLN02973 beta-fructofuranosidase Back     alignment and domain information
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases Back     alignment and domain information
>PLN03005 beta-fructofuranosidase Back     alignment and domain information
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT Back     alignment and domain information
>TIGR01531 glyc_debranch glycogen debranching enzymye Back     alignment and domain information
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative Back     alignment and domain information
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10137 alpha-glucosidase; Provisional Back     alignment and domain information
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>PRK13271 treA trehalase; Provisional Back     alignment and domain information
>PLN02567 alpha,alpha-trehalase Back     alignment and domain information
>PRK13270 treF trehalase; Provisional Back     alignment and domain information
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide [] Back     alignment and domain information
>PRK13272 treA trehalase; Provisional Back     alignment and domain information
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes Back     alignment and domain information
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1626 TreA Neutral trehalase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2161 consensus Glucosidase I [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3538 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
1v7w_A807 Chitobiose phosphorylase; beta-sandwich, (alpha/al 1e-06
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A* Length = 807 Back     alignment and structure
 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 42/334 (12%), Positives = 86/334 (25%), Gaps = 61/334 (18%)

Query: 49  DSGLWWIILLRAYGKCSGDL-LVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMI 107
           D  LW I  +  Y   +G+     + I    G +  +   +    D         G   I
Sbjct: 426 DDHLWLIPTICKYVMETGETSFFDQMIPYADGGEASVYEHMKAALD---FSAEYVGQTGI 482

Query: 108 ---------DRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFH 158
                    D      G    +  L + AL    + LA   G    +         +   
Sbjct: 483 CKGLRADWNDCLNLGGGESSMVSFLHFWALQEFID-LAKFLGKDQDVNTYTEMAANVREA 541

Query: 159 IREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPA 218
              + W                             D    W +  +   G  +       
Sbjct: 542 CETHLW-----------------------------DDEGGWYIRGLTKNGDKIGT---AQ 569

Query: 219 HMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQII 278
             + R     N  ++++GLA++++    +D ++     L +   L +  P+         
Sbjct: 570 QQEGRVHLESNTLAVLSGLASQERGEQAMDAVDEH---LFSPYGLHLNAPSF--STPNDD 624

Query: 279 TGSDPKNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAARAVQVAEKRLSRDKW------ 332
            G   +       N   +        VA  K+ R + A +           D        
Sbjct: 625 IGFVTRVYQGVKENGAIFSHPNPWAWVAETKLGRGDRAMKFYDALNPYNQNDIIEKRIAE 684

Query: 333 ----PEYYDTKRARFIGKQAQLFQTWSIAGYLVS 362
                ++   +  +  G+    + T +      +
Sbjct: 685 PYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYFA 718

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
3qde_A811 Cellobiose phosphorylase; cellulase, phosphate, tr 99.96
3rrs_A822 Cellobiose phosphorylase; GH94, alpha barrel, disa 99.96
2z07_A420 Putative uncharacterized protein TTHA0978; unchara 99.95
3c68_A761 Uncharacterized protein YGJK; GH63, processing alp 99.94
2jg0_A535 Periplasmic trehalase; family 37, hydrolase, inhib 99.94
1v7w_A807 Chitobiose phosphorylase; beta-sandwich, (alpha/al 99.94
3cih_A739 Putative alpha-rhamnosidase; structural genomics, 99.82
2okx_A956 Rhamnosidase B; alpha barrel, glycoside hydrolase 99.74
1lf6_A684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 99.39
1ulv_A 1020 Glucodextranase; GH family 15, (alpha-alpha)6-barr 99.3
2p0v_A489 Hypothetical protein BT3781; alpha-beta protein, s 99.04
3p2c_A463 Putative glycosyl hydrolase; structural genomics, 98.85
3qt9_A427 Putative uncharacterized protein CPE0426; alpha-al 98.57
3qry_B426 Putative uncharacterized protein; alpha-alpha six 98.41
2fba_A492 Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy 98.3
1gai_A472 Glucoamylase-471; hydrolase, glycosidase, polysacc 98.24
2vn4_A 599 Glucoamylase; hydrolase, carbohydrate binding, gly 98.17
2rdy_A803 BH0842 protein; PSI-II, structural genomics, prote 91.0
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 89.34
2eab_A899 Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifi 87.56
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum} Back     alignment and structure
Probab=99.96  E-value=3.6e-29  Score=275.15  Aligned_cols=287  Identities=16%  Similarity=0.134  Sum_probs=207.4

Q ss_pred             CCCCCCCccceeEeeeccCCCCCCCCcccccccCCccccCCcCCCCcHHHHHHHHHHHHHHhCChhHHhh----------
Q 015270            4 HSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQER----------   73 (410)
Q Consensus         4 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ge~a~~~~~sVDatLWfi~a~~~Y~~~TgD~~f~~~----------   73 (410)
                      +|-.+|-+|.-|.    |..+      +      |...+ +.+.+|.+||+|+++++|++.|||.+|+++          
T Consensus       387 ~Q~~dG~~~h~~~----p~~~------~------g~~~~-~~~~~D~~lW~i~av~~Y~~~TGD~~~L~e~~p~~~~~~~  449 (811)
T 3qde_A          387 TQLEDGSAYHQYQ----PLTK------K------GNNEI-GSNFNDDPLWLILATAAYIKETGDYSILKEQVPFNNDPSK  449 (811)
T ss_dssp             TBCTTSCBCSEEC----TTTC------C------EECTT-CCCBTTHHHHHHHHHHHHHHHHCCGGGGGSEEEETTEEEE
T ss_pred             hcccCCCccceec----CCCC------C------CCCCC-CCCcccchhHHHHHHHHHHHHHCCHHHHHhhhhhhcCCcc
Confidence            5778899988884    4210      0      21111 134699999999999999999999999974          


Q ss_pred             -----HHHHHHHHHHHHhhhhcCCCCCCceeeeCCCccccc--------cc-----------ccCCCceehhHHHHHHHH
Q 015270           74 -----IDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDR--------RM-----------GIHGHPLEIQALFYSALL  129 (410)
Q Consensus        74 -----~~l~~al~~i~~~~~~~~f~~~~~ll~~dG~~~~Dr--------~~-----------~~~G~pVEINALwYnAL~  129 (410)
                           +++.++++++++..     +.+. +......+|+|.        ++           +..|.+|++|+|||+||+
T Consensus       450 ~~tl~eh~~ra~~~~~~~~-----g~~G-L~~~g~~DWnD~ln~~~~~~~vg~~~~~vtp~~~~~gesv~~~al~y~AL~  523 (811)
T 3qde_A          450 ADTMFEHLTRSFYHVVNNL-----GPHG-LPLIGRADWNDCLNLNCFSTVPDESFQTTTSKDGKVAESVMIAGMFVFIGK  523 (811)
T ss_dssp             EEEHHHHHHHHHHHHHTCB-----CTTS-SBBCBTCSSSTTCCSSCCCCCTTSCTTTSCCCCCSSCEEHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcC-----CCCC-CcccccCCchhhccccccccccCccccccccccCCcccCHHHHHHHHHHHH
Confidence                 25677777765321     2221 111111123331        11           246999999999999999


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccchhhhhhhhcCCCCCCCCccccccccCCCC
Q 015270          130 CAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGG  209 (410)
Q Consensus       130 ~~~~La~~~~~~~~~~~~l~~~a~~L~~~f~~~FW~~~~~~~~~~~~~~e~~~~~~~n~~~~~~~~~~~~l~d~v~~~~~  209 (410)
                      .+++|++.+ ++.+.++++.++|++|++.|+++||..                               +|..+.++.+|.
T Consensus       524 ~~a~lA~~l-Gd~~~A~~~~~~A~~lk~a~~~~~Wdg-------------------------------~~y~ra~~~dg~  571 (811)
T 3qde_A          524 DYVKLCEYM-GLEEEARKAQQHIDAMKEAILKYGYDG-------------------------------EWFLRAYDDFGR  571 (811)
T ss_dssp             HHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHSBCS-------------------------------SSBCCEECTTSC
T ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHhccCc-------------------------------CeEEEEEcCCCC
Confidence            999999985 456778888999999999999999942                               133343443332


Q ss_pred             cc-ccccCCCccccchhccchhHHHhcCCCCHH-HHHHHHHHHHHhhhhhhcCCCCcccCCCcC----CCCceeeeCCCC
Q 015270          210 YL-IGNLQPAHMDFRFFSLGNIWSIVNGLATRD-QSHAILDLMEAKWADLVADMPLKICYPALE----GQEWQIITGSDP  283 (410)
Q Consensus       210 y~-~~~~rP~~~d~r~~a~gN~LAl~~~ll~~~-~a~~Vl~~v~~~~~~Lltp~GLRsL~P~~~----d~~y~~~y~g~~  283 (410)
                      -. ....++++    +++.++.+++++|+++++ |++++++.|.+   +|+||+|||+|+|+..    |+||.      .
T Consensus       572 ~~gs~~~~~~q----i~~~~q~~avlsGia~~e~ra~~~m~~v~~---~L~t~~Glrll~p~f~~~~~d~g~~------~  638 (811)
T 3qde_A          572 KVGSKENEEGK----IFIESQGFCVMAEIGLEDGKALKALDSVKK---YLDTPYGLVLQNPAFTRYYIEYGEI------S  638 (811)
T ss_dssp             EESSTTSSSCC----EESHHHHHHHHTTCSSSSSHHHHHHHHHHH---HHCCTTCCCSEESCCCSCCTTTGGG------G
T ss_pred             CCCccCCCCce----EEecchhHHHHhCCCCchHHHHHHHHHHHH---HhCCCcceEeecCCccccCCCCCce------e
Confidence            11 12345677    577888899999999999 99999999998   9999999999999743    44443      3


Q ss_pred             CCCCcccccCCCccchHHHHHHHHHHcCChHHHHHHHHHHHHHh------cCCCCCccccCCCCC-CCCCCcchHhHHHH
Q 015270          284 KNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAARAVQVAEKRL------SRDKWPEYYDTKRAR-FIGKQAQLFQTWSI  356 (410)
Q Consensus       284 ~~rp~aYHNGtVWP~LlG~y~~A~~r~g~~~~A~~~L~~~~~~l------~~~~l~ElFdG~~g~-~~G~~ac~~QAWSv  356 (410)
                      .+.|.+||||++|||-+..++.|++|+|+.++|.+++..+....      ...+.||.|+|+... .....||..|+|..
T Consensus       639 ~Y~pg~~enG~iy~H~~~w~~~a~a~~G~~~~A~~~~~~l~p~~~~~~~~~~~~~Py~~~~~~~~~~~p~~Gr~~~~w~t  718 (811)
T 3qde_A          639 TYPPGYKENAGIFCHNNAWIICAETVVGRGDMAFDYYRKIAPAYIEDVSDIHKLEPYVYAQMVAGKDAKRHGEAKNSWLT  718 (811)
T ss_dssp             TSCTTSTTTTCEEHHHHHHHHHHHHHTTCHHHHHHHHHHHCGGGSGGGHHHHCSCTTSCEEEECCTTSTTTTCEEEESCS
T ss_pred             ccCCCccccccccchHHHHHHHHHHHcCCHHHHHHHHHHhChhhhcchhhhcCcCcEEeccccccccCCCCCCCcchhHH
Confidence            46788999999999999999999999999999999886543311      125789999998621 12245678999965


Q ss_pred             HH
Q 015270          357 AG  358 (410)
Q Consensus       357 Ae  358 (410)
                      |+
T Consensus       719 Gs  720 (811)
T 3qde_A          719 GT  720 (811)
T ss_dssp             TH
T ss_pred             HH
Confidence            55
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A* Back     alignment and structure
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Back     alignment and structure
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A* Back     alignment and structure
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A* Back     alignment and structure
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP} Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* Back     alignment and structure
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8 Back     alignment and structure
>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A* Back     alignment and structure
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A Back     alignment and structure
>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A* Back     alignment and structure
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A Back     alignment and structure
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A* Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>2rdy_A BH0842 protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.03A {Bacillus halodurans c-125} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 410
d1v7wa1531 a.102.1.4 (A:271-801) Chitobiose phosphorylase Chb 9e-10
>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]} Length = 531 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Chitobiose phosphorylase ChbP
species: Vibrio proteolyticus [TaxId: 671]

 Score = 58.0 bits (139), Expect = 9e-10
 Identities = 38/277 (13%), Positives = 76/277 (27%), Gaps = 45/277 (16%)

Query: 49  DSGLWWIILLRAYGKCSGDL-LVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMI 107
           D  LW I  +  Y   +G+     + I    G +  +   +    D     +   G C  
Sbjct: 156 DDHLWLIPTICKYVMETGETSFFDQMIPYADGGEASVYEHMKAALDFSAEYVGQTGICKG 215

Query: 108 ------DRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIRE 161
                 D      G    +  L + AL    ++ A   G    +         +      
Sbjct: 216 LRADWNDCLNLGGGESSMVSFLHFWALQEFIDL-AKFLGKDQDVNTYTEMAANVREACET 274

Query: 162 YYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMD 221
           + W D                                W +  +   G  +         +
Sbjct: 275 HLWDDEGG-----------------------------WYIRGLTKNGDKI---GTAQQQE 302

Query: 222 FRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGS 281
            R     N  ++++GLA++++    +D +      L +   L +  P+       I   +
Sbjct: 303 GRVHLESNTLAVLSGLASQERGEQAMDAV---DEHLFSPYGLHLNAPSFSTPNDDIGFVT 359

Query: 282 DPKNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAAR 318
             +       N   +        VA  K+ R + A +
Sbjct: 360 --RVYQGVKENGAIFSHPNPWAWVAETKLGRGDRAMK 394

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
d1v7wa1531 Chitobiose phosphorylase ChbP {Vibrio proteolyticu 99.82
d1lf6a1397 Bacterial glucoamylase, C-terminal domain {Thermoa 99.74
d2jg0a1511 Periplasmic trehalase TreA {Escherichia coli [TaxI 99.69
d1ulva1413 Glucodextranase, domain A {Arthrobacter globiformi 99.38
d2fbaa1492 Glucoamylase {Yeast (Saccharomycopsis fibuligera) 98.16
d1gaia_472 Glucoamylase {Aspergillus awamori, variant x100 [T 98.03
d2p0va1443 Hypothetical protein BT3781 {Bacteroides thetaiota 97.71
d2nvpa1426 Hypothetical protein CPF0428 {Clostridium perfring 97.5
>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Chitobiose phosphorylase ChbP
species: Vibrio proteolyticus [TaxId: 671]

Probab=99.82  E-value=8.1e-21  Score=192.06  Aligned_cols=232  Identities=16%  Similarity=0.113  Sum_probs=167.2

Q ss_pred             CCCCcHHHHHHHHHHHHHHhCChhHHhh--HHHH-----------HHHHHHHHhhhhcCCCCCCcee-eeCCCccccccc
Q 015270           46 APVDSGLWWIILLRAYGKCSGDLLVQER--IDVQ-----------TGIKMILKLCLADGFDMFPTLL-VTDGSCMIDRRM  111 (410)
Q Consensus        46 ~sVDatLWfi~a~~~Y~~~TgD~~f~~~--~~l~-----------~al~~i~~~~~~~~f~~~~~ll-~~dG~~~~Dr~~  111 (410)
                      ..+|.++|+++++++|+++|||.+|+++  |.+.           +..++...      + ..++++ +.....|.|.--
T Consensus       153 ~~~d~~~~i~~a~~~Y~~~TgD~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~gl~~~g~~dw~d~~~  225 (531)
T d1v7wa1         153 TCSDDHLWLIPTICKYVMETGETSFFDQMIPYADGGEASVYEHMKAALDFSAE------Y-VGQTGICKGLRADWNDCLN  225 (531)
T ss_dssp             CBSSGGGGHHHHHHHHHHHHCCGGGGGCEEECTTSCEEEHHHHHHHHHHHHHH------S-BCTTSCBEEETCSSSTTCC
T ss_pred             cccccHHHHHHHHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhh------e-eCCCCCcccCCCccccccc
Confidence            4579999999999999999999999976  3222           22222211      1 112232 222334444322


Q ss_pred             ccCCCceehhHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccchhhhhhhhcCC
Q 015270          112 GIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNI  191 (410)
Q Consensus       112 ~~~G~pVEINALwYnAL~~~~~La~~~~~~~~~~~~l~~~a~~L~~~f~~~FW~~~~~~~~~~~~~~e~~~~~~~n~~~~  191 (410)
                      ...|..+++|+++|.||+.+++|++.+ ++.+.++++.+.+++|++.|+++||.++..                      
T Consensus       226 ~~~~~~~~~~~~~~~al~~~~~la~~~-g~~~~a~~~~~~a~~l~~~~~~~~~~~~~~----------------------  282 (531)
T d1v7wa1         226 LGGGESSMVSFLHFWALQEFIDLAKFL-GKDQDVNTYTEMAANVREACETHLWDDEGG----------------------  282 (531)
T ss_dssp             CEEEEEHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHSEETTTT----------------------
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHhcCCcccc----------------------
Confidence            234677999999999999999999874 566777788889999999999999975311                      


Q ss_pred             CCCCCCccccccccCCCCccccccCCCccccchhccchhHHHhcCCCCHHHHHHHHHHHHHhhhhhhcCCCCcccCCCcC
Q 015270          192 YPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALE  271 (410)
Q Consensus       192 ~~~~~~~~l~d~v~~~~~y~~~~~rP~~~d~r~~a~gN~LAl~~~ll~~~~a~~Vl~~v~~~~~~Lltp~GLRsL~P~~~  271 (410)
                             +..+..+.++ ...+...+..  .+++..+|.+++++++++++|++++++.+..   +|+++.+++++.|+  
T Consensus       283 -------~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~--  347 (531)
T d1v7wa1         283 -------WYIRGLTKNG-DKIGTAQQQE--GRVHLESNTLAVLSGLASQERGEQAMDAVDE---HLFSPYGLHLNAPS--  347 (531)
T ss_dssp             -------EECCEECTTS-CEESCTTCSS--CCEEHHHHHHHHHTTCSCHHHHHHHHHHHHH---HHEETTEECSEESC--
T ss_pred             -------ceeEEEcCCC-CcccccCccc--cccchhhcchhhhcCCCCHHHHHHHHHHHHH---hhcCchhhhccccc--
Confidence                   1222333222 2223333322  2367778889999999999999999999988   99999999999995  


Q ss_pred             CCCceeeeCCCCCCCCcccccCCCccchHHHHHHHHHHcCChHHHHHHHHH
Q 015270          272 GQEWQIITGSDPKNTPWSYHNAGSWPTLLWQFTVACIKMNRPEIAARAVQV  322 (410)
Q Consensus       272 d~~y~~~y~g~~~~rp~aYHNGtVWP~LlG~y~~A~~r~g~~~~A~~~L~~  322 (410)
                      ...+......-..+.|..||||++||+..+.++.|+++.|+.+.|.+++..
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~al~~~G~~d~A~~~~~~  398 (531)
T d1v7wa1         348 FSTPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAETKLGRGDRAMKFYDA  398 (531)
T ss_dssp             CCSCCTTTCGGGGSCTTBTTBTSEESTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccchhhcccccccCCccccCCCcCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            333333333334577889999999999999999999999999999987754
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d2fbaa1 a.102.1.1 (A:1-492) Glucoamylase {Yeast (Saccharomycopsis fibuligera) [TaxId: 4944]} Back     information, alignment and structure
>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant x100 [TaxId: 105351]} Back     information, alignment and structure
>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428 {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure