Citrus Sinensis ID: 015281

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
Protein Sequence
MADKVSLSVESNKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLLLCFVTQKHKCF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccEEEEEEEccccccccccccccccccccEEEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHcccccHccccccccEEEEEEEccccccccEEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEEccccccccccEEEEccccccccEEEEEEEEcccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MADKVSLSvesnkdnpmangpgvsgngrskpqrpnyqypyldpnsshgrgglstvvpspsyqdpgysfdgihspitwldtsifgggqskhnanagytspishsnnfpsgrnqnhrphlanfhhtrptsdafgymsqmyannpmyghygntfragpgygsfgydswisgrgwypvdskykprgrgygasgsgkenvdglnelnkgprakgfknqegfdpatvaakgqnlkssestpednlplipdkekysgedfpesysdAKFFIIKsyseddvhksvkynmwtstpngnkKLDAAYREAkekssdcpvfLLFSVNASGQFVgvaemvgpvdfdkTVEYWQqdkwvgcfplkwliikdvpnsslrhitlennenkpvtnsrdtqevcPFLFLSLIFILLLLCFVTQKHKCF
Flexible Loop (DISEMBL)
madkvslsvesnkdnpmangpgvsgngrskpQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRgygasgsgkenvdglNELNKGPRAKGFKNQEGFDPATVAAKgqnlkssestpednlplipdkekysgedFPESYSDAKFFIIKSYSEDDVHKSVKynmwtstpngnKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLennenkpvtnsrdtQEVCPFLFLSLIFILLLLCFVTQKHKCF
Low Complexity Region (SEG)
MADKVSLSVESNKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPflflslifillllCFVTQKHKCF
Disordered region (IsUnstruct)
****************************************************************GYSFDGIHSPITWLDTSIFGG*******************************************DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSK*********************************************************************************DAKFFIIKSYSEDDVHKSVKYNMWT*********************DCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITL**************QEVCPFLFLSLIFILLLLCFVTQ*****
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************************************************************************************************************PESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLLLCFVTQKHKCF
Disordered Region (DISEMBL)
************KDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVA***************NLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAA*********DCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLLLCFVTQKHKCF
Disordered Region (DISPRO)
************************************QYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSI*****************************************************Q**ANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVD*************************************************************DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLLLCFVTQK*KCF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADKVSLSVESNKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLLLCFVTQKHKCF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	410	2.2.26 [Sep-21-2011]
Q4R5D9	579	YTH domain family protein	N/A	no	0.385	0.272	0.560	1e-45
Q9Y5A9	579	YTH domain family protein	yes	no	0.385	0.272	0.560	1e-45
Q0VCZ3	580	YTH domain family protein	yes	no	0.385	0.272	0.560	1e-45
P59326	559	YTH domain family protein	no	no	0.329	0.241	0.594	5e-43
Q8BYK6	585	YTH domain family protein	no	no	0.329	0.230	0.594	2e-42
Q9BYJ9	559	YTH domain family protein	no	no	0.329	0.241	0.586	2e-42
Q5RFL8	585	YTH domain family protein	no	no	0.329	0.230	0.594	3e-42
Q7Z739	585	YTH domain family protein	no	no	0.329	0.230	0.594	3e-42
Q06390	306	YTH domain-containing pro	yes	no	0.324	0.434	0.416	3e-23
Q9QY02	738	YTH domain-containing pro	no	no	0.295	0.163	0.315	3e-11

>sp|Q4R5D9|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1

 Score =  184 bits (467), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/164 (56%), Positives = 113/164 (68%), Gaps = 6/164 (3%)

Query: 225 GQNLKSSESTPEDNLPLIPDKEK---YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNM 281
           GQ+   S STP +  P++        Y+ +DF  +    + FIIKSYSEDD+H+S+KYN+
Sbjct: 372 GQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNI 431

Query: 282 WTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQ 341
           W ST +GNK+LDAAYR    K    PV+LLFSVN SG F GVAEM   VD++     W Q
Sbjct: 432 WCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQ 488

Query: 342 DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
           DKW G F ++W+ +KDVPNS LRHI LENNENKPVTNSRDTQEV
Sbjct: 489 DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEV 532

Macaca fascicularis (taxid: 9541)

>sp|Q9Y5A9|YTHD2_HUMAN YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2

 Score =  184 bits (467), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/164 (56%), Positives = 113/164 (68%), Gaps = 6/164 (3%)

Query: 225 GQNLKSSESTPEDNLPLIPDKEK---YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNM 281
           GQ+   S STP +  P++        Y+ +DF  +    + FIIKSYSEDD+H+S+KYN+
Sbjct: 372 GQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNI 431

Query: 282 WTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQ 341
           W ST +GNK+LDAAYR    K    PV+LLFSVN SG F GVAEM   VD++     W Q
Sbjct: 432 WCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQ 488

Query: 342 DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
           DKW G F ++W+ +KDVPNS LRHI LENNENKPVTNSRDTQEV
Sbjct: 489 DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEV 532

Homo sapiens (taxid: 9606)

>sp|Q0VCZ3|YTHD2_BOVIN YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/164 (56%), Positives = 112/164 (68%), Gaps = 6/164 (3%)

Query: 225 GQNLKSSESTPEDNLPLIPDKEK---YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNM 281
           GQ    S STP +  P++        Y+ +DF  +    + FIIKSYSEDD+H+S+KYN+
Sbjct: 373 GQTQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNI 432

Query: 282 WTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQ 341
           W ST +GNK+LDAAYR    K    PV+LLFSVN SG F GVAEM   VD++     W Q
Sbjct: 433 WCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQ 489

Query: 342 DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
           DKW G F ++W+ +KDVPNS LRHI LENNENKPVTNSRDTQEV
Sbjct: 490 DKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEV 533

Bos taurus (taxid: 9913)

>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1

 Score =  175 bits (444), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 103/138 (74%), Gaps = 3/138 (2%)

Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
           Y+ ++F  +    + FIIKSYSEDD+H+S+KY++W ST +GNK+LD A+R     SS  P
Sbjct: 377 YNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSM---SSKGP 433

Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
           V+LLFSVN SG F GVAEM  PVD+  +   W QDKW G F +KW+ +KDVPN+ LRHI 
Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIR 493

Query: 368 LENNENKPVTNSRDTQEV 385
           LENN+NKPVTNSRDTQEV
Sbjct: 494 LENNDNKPVTNSRDTQEV 511

Mus musculus (taxid: 10090)

>sp|Q8BYK6|YTHD3_MOUSE YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 103/138 (74%), Gaps = 3/138 (2%)

Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
           Y+ +DF  +  + + FIIKSYSEDD+H+S+KY++W ST +GNK+LDAAYR    K    P
Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460

Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
           ++LLFSVN SG F GVAEM   VD++     W QDKW G F +KW+ +KDVPN+ LRHI 
Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520

Query: 368 LENNENKPVTNSRDTQEV 385
           LENN+NKPVTNSRDTQEV
Sbjct: 521 LENNDNKPVTNSRDTQEV 538

Mus musculus (taxid: 10090)

>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/138 (58%), Positives = 104/138 (75%), Gaps = 3/138 (2%)

Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
           Y+ ++F  +    + FIIKSYSEDD+H+S+KY++W ST +GNK+LD+A+R     SS  P
Sbjct: 377 YNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCM---SSKGP 433

Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
           V+LLFSVN SG F GVAEM  PVD+  +   W QDKW G F ++W+ +KDVPN+ LRHI 
Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIR 493

Query: 368 LENNENKPVTNSRDTQEV 385
           LENN+NKPVTNSRDTQEV
Sbjct: 494 LENNDNKPVTNSRDTQEV 511

Homo sapiens (taxid: 9606)

>sp|Q5RFL8|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1

 Score =  173 bits (438), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 103/138 (74%), Gaps = 3/138 (2%)

Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
           Y+ +DF  +  + + FIIKSYSEDD+H+S+KY++W ST +GNK+LDAAYR    K    P
Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460

Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
           ++LLFSVN SG F GVAEM   VD++     W QDKW G F +KW+ +KDVPN+ LRHI 
Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520

Query: 368 LENNENKPVTNSRDTQEV 385
           LENN+NKPVTNSRDTQEV
Sbjct: 521 LENNDNKPVTNSRDTQEV 538

Pongo abelii (taxid: 9601)

>sp|Q7Z739|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1

 Score =  173 bits (438), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 103/138 (74%), Gaps = 3/138 (2%)

Query: 248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
           Y+ +DF  +  + + FIIKSYSEDD+H+S+KY++W ST +GNK+LDAAYR    K    P
Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460

Query: 308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
           ++LLFSVN SG F GVAEM   VD++     W QDKW G F +KW+ +KDVPN+ LRHI 
Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520

Query: 368 LENNENKPVTNSRDTQEV 385
           LENN+NKPVTNSRDTQEV
Sbjct: 521 LENNDNKPVTNSRDTQEV 538

Homo sapiens (taxid: 9606)

>sp|Q06390|YD374_YEAST YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR374C PE=4 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 88/137 (64%), Gaps = 4/137 (2%)

Query: 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASG 318
           +++FF+IKS S   V +S    +W+ST  GNK+L  AY   K+ +S   VFL FS+N SG
Sbjct: 154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAY---KKLNSGAKVFLFFSINTSG 210

Query: 319 QFVGVAEMVGPVDFDKTVEYWQQDKWVG-CFPLKWLIIKDVPNSSLRHITLENNENKPVT 377
           +F GVAEMV  +  D     W+ ++  G  F ++W+I++D+ N SL+   + +NE KP+T
Sbjct: 211 RFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPIT 270

Query: 378 NSRDTQEVCPFLFLSLI 394
           +SRDTQE+   + +S+I
Sbjct: 271 HSRDTQEIPYSIGISII 287

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 12/133 (9%)

Query: 259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASG 318
           DA+FF+IKS + ++V  +    +W++ P   KKL+ A+R A+       V L+FSV  SG
Sbjct: 357 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR------SVILIFSVRESG 410

Query: 319 QFVGVAEMVGPVDFDKTVEYW------QQDKWVGCFPLKWLIIKDVPNSSLRHITLENNE 372
           +F G A +        +  +W            G F + W+  +++P +   H+T   NE
Sbjct: 411 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 470

Query: 373 NKPVTNSRDTQEV 385
           +KPV   RD QE+
Sbjct: 471 HKPVKIGRDGQEI 483

May be part of a signal transduction pathway that influences splice site selection.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	410
297739755	694	unnamed protein product [Vitis vinifera]	0.926	0.547	0.633	1e-132
147861284	696	hypothetical protein VITISV_009052 [Viti	0.926	0.545	0.633	1e-130
359481843	646	PREDICTED: uncharacterized protein LOC10	0.929	0.589	0.626	1e-130
255568928	677	yth domain-containing protein, putative	0.914	0.553	0.544	1e-117
225435800	705	PREDICTED: uncharacterized protein LOC10	0.970	0.564	0.563	1e-117
356525319	707	PREDICTED: uncharacterized protein LOC10	0.958	0.555	0.556	1e-114
118489688	615	unknown [Populus trichocarpa x Populus d	0.939	0.626	0.554	1e-113
356525321	659	PREDICTED: uncharacterized protein LOC10	0.929	0.578	0.563	1e-113
224056931	538	predicted protein [Populus trichocarpa]	0.909	0.693	0.563	1e-112
224075964	522	predicted protein [Populus trichocarpa]	0.939	0.737	0.554	1e-112

>gi|297739755|emb|CBI29937.3| unnamed protein product [Vitis vinifera]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/390 (63%), Positives = 293/390 (75%), Gaps = 10/390 (2%)

Query: 3   DKVSLSVESNKDNPMANGPGVSGNGRSKPQ--RPNYQYPYLDPNSSHGRGGLSTVVPSPS 60
           D+V LSVE+ K N      G + NG + P+  RP++Q   L  N S+GR  L T VPS  
Sbjct: 176 DQVPLSVEAAKGNTNNLVNGGNVNGNNGPKALRPSHQNSSLSSNGSYGRASLPTGVPSSG 235

Query: 61  YQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLAN 120
           YQDP + FDG  S I   D  +F  GQSKH A+ G++SP+SH+NNFPSGRNQN RP +  
Sbjct: 236 YQDPRFGFDGTRSLIPSAD--MFSEGQSKHVASVGFSSPVSHANNFPSGRNQNFRP-IPQ 292

Query: 121 FHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSK 177
             H R  S    A G+MS+MY NN MY  YGN FR G G+GS GYDS  SGRGW  VDS+
Sbjct: 293 LMHARAASGLGQASGFMSRMYPNNRMYDQYGNAFRTGSGFGSNGYDSRTSGRGWLTVDSR 352

Query: 178 YKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLK--SSESTP 235
           Y+ + R     G G EN+DGLNELN+GPRAKGFKNQ+GF P T+A +GQNL+   + S  
Sbjct: 353 YRNKSRANSVLGYGNENMDGLNELNRGPRAKGFKNQKGFGPVTLAVRGQNLQLNGNNSNS 412

Query: 236 EDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAA 295
           + NL L+PDKE+Y+ EDFPE+YSDAKFFIIKSYSEDDVHKS+KYNMW ST NGNKKLDAA
Sbjct: 413 DGNLTLVPDKEQYNSEDFPENYSDAKFFIIKSYSEDDVHKSIKYNMWASTANGNKKLDAA 472

Query: 296 YREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLII 355
           Y+EA+ KS  CP+FLLFSVNASGQFVGVAEMVG VDF++++EYWQQDKW GCFP+KW +I
Sbjct: 473 YQEAQGKSGSCPIFLLFSVNASGQFVGVAEMVGSVDFNRSLEYWQQDKWTGCFPVKWHVI 532

Query: 356 KDVPNSSLRHITLENNENKPVTNSRDTQEV 385
           KD+PNS L+HITLENNENKPVTNSRDTQEV
Sbjct: 533 KDIPNSLLKHITLENNENKPVTNSRDTQEV 562

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147861284|emb|CAN81896.1| hypothetical protein VITISV_009052 [Vitis vinifera]

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/390 (63%), Positives = 293/390 (75%), Gaps = 10/390 (2%)

Query: 3   DKVSLSVESNKDNPMANGPGVSGNGRSKPQ--RPNYQYPYLDPNSSHGRGGLSTVVPSPS 60
           D+V LSVE+ K N      G + NG + P+  RP++Q   L  N S+GR  L T VPS  
Sbjct: 231 DQVPLSVEAAKGNTNNLVNGGNVNGNNGPKALRPSHQNSSLSSNGSYGRASLPTGVPSSG 290

Query: 61  YQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLAN 120
           YQDP + FDG  S I   D  +F  GQSKH A+ G++SP+SH+NNFPSGRNQN RP +  
Sbjct: 291 YQDPRFGFDGTRSLIPSAD--MFSEGQSKHVASVGFSSPVSHANNFPSGRNQNFRP-IPQ 347

Query: 121 FHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSK 177
             H R  S    A G+MS+MY NN MY  YGN FR G G+GS GYDS  SGRGW  VDS+
Sbjct: 348 LMHARAASGLGQASGFMSRMYPNNRMYDQYGNAFRTGSGFGSNGYDSRTSGRGWLTVDSR 407

Query: 178 YKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLK--SSESTP 235
           Y+ + R     G G EN+DGLNELN+GPRAKGFKNQ+GF P T+A +GQNL+   + S  
Sbjct: 408 YRNKSRANSVJGYGNENMDGLNELNRGPRAKGFKNQKGFGPVTLAVRGQNLQLNGNNSNS 467

Query: 236 EDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAA 295
           + NL L+PDKE+Y+ EDFPE+YSDAKFFIIKSYSEDDVHKS+KYNMW ST NGNKKLDAA
Sbjct: 468 DGNLTLVPDKEQYNSEDFPENYSDAKFFIIKSYSEDDVHKSIKYNMWASTANGNKKLDAA 527

Query: 296 YREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLII 355
           Y+EA+ KS  CP+FLLFSVNASGQFVGVAEMVG VDF++++EYWQQDKW GCFP+KW +I
Sbjct: 528 YQEAQGKSGSCPIFLLFSVNASGQFVGVAEMVGSVDFNRSLEYWQQDKWTGCFPVKWHVI 587

Query: 356 KDVPNSSLRHITLENNENKPVTNSRDTQEV 385
           KD+PNS L+HITLENNENKPVTNSRDTQEV
Sbjct: 588 KDIPNSLLKHITLENNENKPVTNSRDTQEV 617

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481843|ref|XP_002276915.2| PREDICTED: uncharacterized protein LOC100245287 [Vitis vinifera]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/394 (62%), Positives = 292/394 (74%), Gaps = 13/394 (3%)

Query: 3   DKVSLSVESNKDNPMANGPGVSGNGRSKPQ--RPNYQYPYLDPNSSHGRGGLSTVVPSPS 60
           D+V LSVE+ K N      G + NG + P+  RP++Q   L  N S+GR  L T VPS  
Sbjct: 176 DQVPLSVEAAKGNTNNLVNGGNVNGNNGPKALRPSHQNSSLSSNGSYGRASLPTGVPSSG 235

Query: 61  YQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRP---- 116
           YQDP + FDG  S I   D  +F  GQSKH A+ G++SP+SH+NNFPSGRNQN RP    
Sbjct: 236 YQDPRFGFDGTRSLIPSAD--MFSEGQSKHVASVGFSSPVSHANNFPSGRNQNFRPIPQL 293

Query: 117 HLANFHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYP 173
                 H R  S    A G+MS+MY NN MY  YGN FR G G+GS GYDS  SGRGW  
Sbjct: 294 MSLGLQHARAASGLGQASGFMSRMYPNNRMYDQYGNAFRTGSGFGSNGYDSRTSGRGWLT 353

Query: 174 VDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLK--SS 231
           VDS+Y+ + R     G G EN+DGLNELN+GPRAKGFKNQ+GF P T+A +GQNL+   +
Sbjct: 354 VDSRYRNKSRANSVLGYGNENMDGLNELNRGPRAKGFKNQKGFGPVTLAVRGQNLQLNGN 413

Query: 232 ESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKK 291
            S  + NL L+PDKE+Y+ EDFPE+YSDAKFFIIKSYSEDDVHKS+KYNMW ST NGNKK
Sbjct: 414 NSNSDGNLTLVPDKEQYNSEDFPENYSDAKFFIIKSYSEDDVHKSIKYNMWASTANGNKK 473

Query: 292 LDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLK 351
           LDAAY+EA+ KS  CP+FLLFSVNASGQFVGVAEMVG VDF++++EYWQQDKW GCFP+K
Sbjct: 474 LDAAYQEAQGKSGSCPIFLLFSVNASGQFVGVAEMVGSVDFNRSLEYWQQDKWTGCFPVK 533

Query: 352 WLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
           W +IKD+PNS L+HITLENNENKPVTNSRDTQEV
Sbjct: 534 WHVIKDIPNSLLKHITLENNENKPVTNSRDTQEV 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568928|ref|XP_002525434.1| yth domain-containing protein, putative [Ricinus communis] gi|223535247|gb|EEF36924.1| yth domain-containing protein, putative [Ricinus communis]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/413 (54%), Positives = 278/413 (67%), Gaps = 38/413 (9%)

Query: 2   ADKVSLSVESNKDNP--MANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSP 59
           ADK +LSV +   NP    N   V+ +   KP RP+ Q    + + ++  GGL T  PS 
Sbjct: 188 ADKAALSVGTAGGNPNNAVNSGCVNRSNGPKPFRPSNQNSSSNFSGAYKSGGLQTGFPSS 247

Query: 60  SYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLA 119
            Y DP + +D   SP+ WLD  ++    + H  N G +SP+                   
Sbjct: 248 GYHDPRFGYDAFQSPMPWLDAPMYSNAPAGHAMNTGLSSPL------------------- 288

Query: 120 NFHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDS 176
           N H TRP S      G M+ MY +N MYG YG  +RAG G+GSFG +SW +GRGW  VD+
Sbjct: 289 NLHPTRPISGLGQGSGAMNLMYPDNRMYGQYG--YRAGAGFGSFGANSWTNGRGWVVVDN 346

Query: 177 KYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPE 236
           KYKP+ RGYG      EN+DGL+ELN+GPRAKGF+N   F P + A +GQNL  S++T E
Sbjct: 347 KYKPKARGYG-----NENIDGLSELNRGPRAKGFRNHTEFGPVSQAVQGQNLPLSDNTKE 401

Query: 237 DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAY 296
           DN   +PD E+Y+ EDFPE YS+AKFF+IKSYSEDDVHKS+KY +W ST NGNKKLDAAY
Sbjct: 402 DNSSQVPDNEQYNREDFPEDYSNAKFFVIKSYSEDDVHKSIKYGVWASTANGNKKLDAAY 461

Query: 297 REAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIK 356
            EAKE S  CP+FLLFSVN SGQFVG+AEMVGPVDF+KTVEYWQQ+KW+GCFP+KW IIK
Sbjct: 462 HEAKETSGGCPIFLLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQQEKWIGCFPVKWHIIK 521

Query: 357 DVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLLLCFVTQKHKC 409
           DVPN+SLRH+TLENNENKPVTNSRDTQEV   +F   I +L +     + H+C
Sbjct: 522 DVPNNSLRHVTLENNENKPVTNSRDTQEV---IFEKGIQMLKIF----KGHRC 567

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435800|ref|XP_002285750.1| PREDICTED: uncharacterized protein LOC100253534 [Vitis vinifera]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/410 (56%), Positives = 283/410 (69%), Gaps = 12/410 (2%)

Query: 2   ADKVSLSVES--NKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSP 59
           AD+  LSVE+     N +A+G  + GN  S P +P YQ    + N S+GRG L   VP+ 
Sbjct: 191 ADQKPLSVETANGNSNGIASGGAMKGNNGSAPVKPTYQNSPFNSNGSYGRGALPGGVPAS 250

Query: 60  SYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLA 119
            YQDP ++FDG+ SP+ WLD  +F     +   +   TS IS++NN  + RN     H  
Sbjct: 251 GYQDPRFAFDGLRSPLPWLDGPVFS--DPRPVTSTSITSSISNANNVTASRNLRPHSHFM 308

Query: 120 NFHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDS 176
              H RP S    A G+M++MY N  +YG YGNT R+G G+GS  YDS  +GR W  VD+
Sbjct: 309 GLQHPRPMSGMGTAHGFMNRMYPNK-LYGQYGNTVRSGLGFGSNAYDSRTNGRSWLAVDN 367

Query: 177 KYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPE 236
           KYKPRGRG G  G G EN+DGLNELN+GPRAK  KNQ+G  P T  AKGQN++S+ S  E
Sbjct: 368 KYKPRGRGIGFFGYGNENMDGLNELNRGPRAKSSKNQKGLAPVT--AKGQNVQSNGSNDE 425

Query: 237 --DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDA 294
             D   + PD+++Y+  DFP  +++AKFFIIKSYSEDDVHKS+KYN+W STPNGNKKLDA
Sbjct: 426 EKDRTSVFPDRDQYNHADFPVEHTEAKFFIIKSYSEDDVHKSIKYNVWASTPNGNKKLDA 485

Query: 295 AYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLI 354
           AYREA+EKS+ CPVFL FSVN SGQFVG+AEMVG VDF K VEYWQQDKW GCF +KW +
Sbjct: 486 AYREAQEKSAGCPVFLFFSVNTSGQFVGLAEMVGHVDFHKNVEYWQQDKWNGCFSVKWHV 545

Query: 355 IKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLLLCFVT 404
           +KDVPNS L+HITLENNENKPVTNSRDTQEV     L ++ I    C  T
Sbjct: 546 VKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLQMLKIFKEHCSKT 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525319|ref|XP_003531272.1| PREDICTED: uncharacterized protein LOC100819200 isoform 1 [Glycine max]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/406 (55%), Positives = 276/406 (67%), Gaps = 13/406 (3%)

Query: 2   ADKVSLSVES--NKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSP 59
           AD+  L VE+     N ++NG    GN  + P +   Q       +S+ R  +    P+ 
Sbjct: 192 ADQKPLPVEAANGNSNGVSNGGNAKGNNAAAPIKQANQNSSFSSKASNERVAMPGRGPTS 251

Query: 60  SYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRP--H 117
            YQDP + +DG+ SPI WLD  +F  GQ +  ++   TS IS  NN  S R+Q  RP   
Sbjct: 252 GYQDPRFGYDGVRSPIPWLDAPLFSDGQPRPVSSTTITSSISGGNNTAS-RSQTFRPNSQ 310

Query: 118 LANFHHTRPTSDAFG----YMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYP 173
               HH RP   A G    ++++MY N  +YG YGNT R+G GYG+ GYDS  +GR W  
Sbjct: 311 FMGLHHPRPMP-AMGATHSFINRMYPNK-LYGQYGNTVRSGMGYGTHGYDSRANGRAWLA 368

Query: 174 VDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSES 233
           VDSKYK RGR  G  G G ENVDGLNELN+GPRAKG KNQ+GF P  +A KGQNL +S  
Sbjct: 369 VDSKYKTRGRSGGYFGYGNENVDGLNELNRGPRAKGGKNQKGFAPTILAVKGQNLPASLG 428

Query: 234 TPE--DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKK 291
           T E  D    +PD+++Y+  DFPE Y+DAKFF+IKSYSEDD+HKS+KYN+W ST NGNKK
Sbjct: 429 TDEEKDKTSTVPDRDQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKYNVWASTQNGNKK 488

Query: 292 LDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLK 351
           LDAAY EA++K   CPVFL FSVN SGQFVG+AEM+GPVDF+K+VEYWQQDKW GCFPLK
Sbjct: 489 LDAAYHEAQQKPGGCPVFLFFSVNTSGQFVGLAEMIGPVDFNKSVEYWQQDKWNGCFPLK 548

Query: 352 WLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFIL 397
           W ++KDVPN+ LRHITL+NNENKPVTNSRDTQEV     L LI I 
Sbjct: 549 WHVVKDVPNNLLRHITLDNNENKPVTNSRDTQEVMLEPGLKLIKIF 594

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489688|gb|ABK96645.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/406 (55%), Positives = 281/406 (69%), Gaps = 21/406 (5%)

Query: 2   ADKVSLSVESNKDNP--MANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSP 59
           AD+ SL VE+ K+N   +ANG  V G   + P +P YQ       +S+GRG  +  +P+ 
Sbjct: 168 ADQKSLPVETGKENSNGIANGGDVKGANGAVPYKPKYQ-------NSYGRGSYTKGIPAS 220

Query: 60  SYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQN--HRPH 117
            Y+D    FD +   I  LD+S+   G  +   N   +S  S ++N PS RNQN     H
Sbjct: 221 GYKDLRSCFDRLQPDIPLLDSSVLSDGLYR---NTDISSSFSKASNAPSSRNQNFHQNSH 277

Query: 118 LANFHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPV 174
              + H    S      GYM++MY+N  +YG YGN F++G G+GS GY++ I+G+GW P+
Sbjct: 278 FMGWQHPGLASGMGSTHGYMNRMYSNK-LYGQYGNGFKSGVGFGSGGYNAGINGQGWLPI 336

Query: 175 DSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKG-FKNQEGFDPATVAAKGQNLKSSES 233
           DSKYKP+G+G G  G   EN+DGLNELN+GPRAKG FKNQ+GF P+TVA KGQ++ SS++
Sbjct: 337 DSKYKPKGQGNGYFGFRNENIDGLNELNRGPRAKGYFKNQKGFVPSTVAVKGQSVPSSDA 396

Query: 234 TPE--DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKK 291
             E  D    +PD+E+Y+  DFP  Y DAKFFIIKSYSEDDVHK +KYN+W STPNGNKK
Sbjct: 397 NAEEKDKTTEVPDREQYNKADFPVEYVDAKFFIIKSYSEDDVHKCIKYNVWASTPNGNKK 456

Query: 292 LDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLK 351
           LDAAY+EA +KS  CPVFLLFSVN SGQFVG+AEM G VDFDK+VEYWQQDKW G FP+K
Sbjct: 457 LDAAYQEAGQKSGGCPVFLLFSVNTSGQFVGLAEMTGRVDFDKSVEYWQQDKWTGYFPVK 516

Query: 352 WLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFIL 397
           W  +KDVPNS L+HITLENNENKPVTNSRDTQEV     L +I I 
Sbjct: 517 WHFVKDVPNSLLKHITLENNENKPVTNSRDTQEVKLEQGLEMIKIF 562

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525321|ref|XP_003531273.1| PREDICTED: uncharacterized protein LOC100819200 isoform 2 [Glycine max]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/394 (56%), Positives = 272/394 (69%), Gaps = 13/394 (3%)

Query: 2   ADKVSLSVES--NKDNPMANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSP 59
           AD+  L VE+     N ++NG    GN  + P +   Q       +S+ R  +    P+ 
Sbjct: 192 ADQKPLPVEAANGNSNGVSNGGNAKGNNAAAPIKQANQNSSFSSKASNERVAMPGRGPTS 251

Query: 60  SYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRP--H 117
            YQDP + +DG+ SPI WLD  +F  GQ +  ++   TS IS  NN  S R+Q  RP   
Sbjct: 252 GYQDPRFGYDGVRSPIPWLDAPLFSDGQPRPVSSTTITSSISGGNNTAS-RSQTFRPNSQ 310

Query: 118 LANFHHTRPTSDAFG----YMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYP 173
               HH RP   A G    ++++MY N  +YG YGNT R+G GYG+ GYDS  +GR W  
Sbjct: 311 FMGLHHPRPMP-AMGATHSFINRMYPNK-LYGQYGNTVRSGMGYGTHGYDSRANGRAWLA 368

Query: 174 VDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSES 233
           VDSKYK RGR  G  G G ENVDGLNELN+GPRAKG KNQ+GF P  +A KGQNL +S  
Sbjct: 369 VDSKYKTRGRSGGYFGYGNENVDGLNELNRGPRAKGGKNQKGFAPTILAVKGQNLPASLG 428

Query: 234 TPE--DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKK 291
           T E  D    +PD+++Y+  DFPE Y+DAKFF+IKSYSEDD+HKS+KYN+W ST NGNKK
Sbjct: 429 TDEEKDKTSTVPDRDQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKYNVWASTQNGNKK 488

Query: 292 LDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLK 351
           LDAAY EA++K   CPVFL FSVN SGQFVG+AEM+GPVDF+K+VEYWQQDKW GCFPLK
Sbjct: 489 LDAAYHEAQQKPGGCPVFLFFSVNTSGQFVGLAEMIGPVDFNKSVEYWQQDKWNGCFPLK 548

Query: 352 WLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
           W ++KDVPN+ LRHITL+NNENKPVTNSRDTQEV
Sbjct: 549 WHVVKDVPNNLLRHITLDNNENKPVTNSRDTQEV 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056931|ref|XP_002299095.1| predicted protein [Populus trichocarpa] gi|222846353|gb|EEE83900.1| predicted protein [Populus trichocarpa]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/394 (56%), Positives = 277/394 (70%), Gaps = 21/394 (5%)

Query: 2   ADKVSLSVESNKDNP--MANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSP 59
           AD+ SL VE+ K+N   +ANG  V G   + P +P YQ       +S+GRG  +  +P+ 
Sbjct: 140 ADQKSLPVETGKENSNGIANGGDVKGANGAVPYKPKYQ-------NSYGRGSYTKGIPAS 192

Query: 60  SYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQN--HRPH 117
            Y+D    FD +   I  LD+S+   G  +   N   +S  S ++N PS RNQN     H
Sbjct: 193 GYKDLRSCFDRLQPDIPLLDSSVLSDGLYR---NTDISSSFSKASNAPSSRNQNFHQNSH 249

Query: 118 LANFHHTRPTS---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPV 174
              + H    S      GYM++MY+N  +YG YGN F++G G+GS GY++ I+G+GW P+
Sbjct: 250 FMGWQHPGLASGMGSTHGYMNRMYSNK-LYGQYGNGFKSGMGFGSGGYNAGINGQGWLPI 308

Query: 175 DSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKG-FKNQEGFDPATVAAKGQNLKSSES 233
           DSKYKP+G+G G  G   EN+DGLNELN+GPRAKG FKNQ+GF P+TVA KGQ++ SS++
Sbjct: 309 DSKYKPKGQGNGYFGFRNENIDGLNELNRGPRAKGYFKNQKGFVPSTVAVKGQSVPSSDA 368

Query: 234 TPE--DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKK 291
             E  D    +PD+E+Y+  DFP  Y DAKFFIIKSYSEDDVHK +KYN+W STPNGNKK
Sbjct: 369 NAEEKDKTTEVPDREQYNKADFPVEYVDAKFFIIKSYSEDDVHKCIKYNVWASTPNGNKK 428

Query: 292 LDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLK 351
           LDAAY+EA +KS  CPVFLLFSVN SGQFVG+AEM G VDFDK+VEYWQQDKW G FP+K
Sbjct: 429 LDAAYQEAGQKSGGCPVFLLFSVNTSGQFVGLAEMTGRVDFDKSVEYWQQDKWTGYFPVK 488

Query: 352 WLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
           W  +KDVPNS L+HITLENNENKPVTNSRDTQEV
Sbjct: 489 WHFVKDVPNSLLKHITLENNENKPVTNSRDTQEV 522

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075964|ref|XP_002304850.1| predicted protein [Populus trichocarpa] gi|222842282|gb|EEE79829.1| predicted protein [Populus trichocarpa]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/406 (55%), Positives = 278/406 (68%), Gaps = 21/406 (5%)

Query: 2   ADKVSLSVESNKDNP--MANGPGVSGNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSP 59
            D+  L VE+ K+N   +ANG  V G+  + P +P YQ       +S+GRGG +  +P+ 
Sbjct: 71  TDQKPLPVETAKENSNGIANGVDVKGSNGAVPYKPKYQ-------NSYGRGGFTKGLPAS 123

Query: 60  SYQDPGYSFDGIHSPITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQN--HRPH 117
            Y+D    FD +      LDTS+   G  K   N   +S  S + N PS RNQN     H
Sbjct: 124 GYKDLKSRFDRLQPDSPLLDTSVLSSGLYK---NTEISSSFSKAGNAPSSRNQNFHQNSH 180

Query: 118 LANFHH---TRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPV 174
              + H           GYM++MY N   YG YGN F++G G+GS GY++ I+G GW  +
Sbjct: 181 FMGWQHPALAPGVGSTHGYMNRMYPNK-FYGQYGNGFKSGMGFGSGGYNAGINGHGWLAI 239

Query: 175 DSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKG-FKNQEGFDPATVAAKGQNLKSSES 233
           DSKYKP+GRG G  G   +++DGLNELN+GPRAKG FKNQ+GF PATVA KGQ++ SS++
Sbjct: 240 DSKYKPKGRGNGYFGYHNDSIDGLNELNRGPRAKGYFKNQKGFVPATVAVKGQSVPSSDT 299

Query: 234 TPE--DNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKK 291
             E  D   ++PD+E+Y+  DFPE Y +AKFFIIKSYSEDDVHK +KYN+W STPNGNKK
Sbjct: 300 NVEEKDKTTVVPDREQYNKADFPEEYDNAKFFIIKSYSEDDVHKCIKYNVWASTPNGNKK 359

Query: 292 LDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLK 351
           LDAAY+EA++KS  CPVFLLFSVN SGQFVG+AEM G VDFDK+VEYWQQDKW G FP+K
Sbjct: 360 LDAAYQEAEQKSGGCPVFLLFSVNTSGQFVGLAEMTGRVDFDKSVEYWQQDKWTGYFPVK 419

Query: 352 WLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFIL 397
           W I+KDVPNS L+HITLENNENKPVTNSRDTQEV     L LI I 
Sbjct: 420 WHIVKDVPNSFLKHITLENNENKPVTNSRDTQEVKLEQGLKLIKIF 465

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	410
TAIR|locus:2092815	667	ECT2 "evolutionarily conserved	0.890	0.547	0.531	2.3e-101
TAIR|locus:2159391	495	ECT3 "AT5G61020" [Arabidopsis	0.670	0.555	0.592	1.9e-90
TAIR|locus:2095938	428	ECT1 "evolutionarily conserved	0.712	0.682	0.550	6e-87
TAIR|locus:2089280	634	ECT5 "AT3G13060" [Arabidopsis	0.592	0.383	0.546	2e-67
TAIR|locus:2023807	639	ECT7 "AT1G48110" [Arabidopsis	0.453	0.291	0.557	7.8e-58
TAIR|locus:2010494	539	ECT9 "AT1G27960" [Arabidopsis	0.570	0.434	0.489	7.8e-58
TAIR|locus:2088995	595	ECT6 "AT3G17330" [Arabidopsis	0.817	0.563	0.408	1.4e-57
TAIR|locus:2207405	528	ECT8 "AT1G79270" [Arabidopsis	0.507	0.393	0.524	3.4e-54
TAIR|locus:2161213	528	ECT10 "evolutionarily conserve	0.763	0.592	0.372	1.7e-52
TAIR|locus:2024286	470	ECT11 "AT1G09810" [Arabidopsis	0.690	0.602	0.400	2e-49

TAIR|locus:2092815 ECT2 "evolutionarily conserved C-terminal region 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 203/382 (53%), Positives = 263/382 (68%)

Query:    15 NPMANGPGVS-GNGRSKPQRPNYQYPYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHS 73
             N +A+  G++ G+  S P +P  Q      ++ +G G     + +  YQDP Y+++G ++
Sbjct:   192 NNVASAAGITKGSNGSAPVKPTNQATLNTSSNLYGMGAPGGGLAA-GYQDPRYAYEGYYA 250

Query:    74 PITWLDTSIFGGGQSKHNANAGYTSPISHSNNFPSGRNQNHRPHLANFHHT---RPTS-- 128
             P+ W D S +   Q +  + +G  S  S S+  PS RNQN+R   +N H+T   +P+S  
Sbjct:   251 PVPWHDGSKYSDVQ-RPVSGSGVASSYSKSSTVPSSRNQNYR---SNSHYTSVHQPSSVT 306

Query:   129 ---DAFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGY 185
                 A GY ++MY N  +YG YG+T R+  GYGS GYDS  +GRGW   D+KY+  GRG 
Sbjct:   307 GYGTAQGYYNRMYQNK-LYGQYGSTGRSALGYGSSGYDSRTNGRGWAATDNKYRSWGRGN 365

Query:   186 GASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSS--ESTPEDNLPLIP 243
                   + NVDGLNELN+GPRAKG KNQ+G    ++  K Q  +S+  E    DN  ++P
Sbjct:   366 SYYYGNENNVDGLNELNRGPRAKGTKNQKGNLDDSLEVKEQTGESNVTEVGEADNTCVVP 425

Query:   244 DKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKS 303
             D+E+Y+ EDFP  Y++A FFIIKSYSEDDVHKS+KYN+W STPNGNKKL AAY+EA++K+
Sbjct:   426 DREQYNKEDFPVDYANAMFFIIKSYSEDDVHKSIKYNVWASTPNGNKKLAAAYQEAQQKA 485

Query:   304 SDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSL 363
               CP+FL FSVNASGQFVG+AEM GPVDF+  VEYWQQDKW G FPLKW I+KDVPNS L
Sbjct:   486 GGCPIFLFFSVNASGQFVGLAEMTGPVDFNTNVEYWQQDKWTGSFPLKWHIVKDVPNSLL 545

Query:   364 RHITLENNENKPVTNSRDTQEV 385
             +HITLENNENKPVTNSRDTQEV
Sbjct:   546 KHITLENNENKPVTNSRDTQEV 567

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2159391 ECT3 "AT5G61020" [Arabidopsis thaliana (taxid:3702)]

 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 169/285 (59%), Positives = 214/285 (75%)

Query:   102 HSNNFPSGRNQNHRPHLANFHHTRPTSDAFG-YMSQMYANNPMYGHYGNTFRAGPGYGSF 160
             ++ ++ SG+      +L     +     ++G YM  +Y+N  M G Y N    G GYGS+
Sbjct:   111 YTGSYASGKTNLQYQYLTQQGRSAGNGQSYGGYMDNIYSNYGMCGPYTN----GYGYGSY 166

Query:   161 GYDSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPAT 220
             GYDSW     WY V++ YKPR  GY   G GKEN++GLNE+N+GPRAKGF +Q+G     
Sbjct:   167 GYDSWKYMPNWYAVNNTYKPRN-GY--HGYGKENIEGLNEMNRGPRAKGFNSQDGSKVMA 223

Query:   221 VAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYN 280
             V+ K Q +  +E   ED + L+  K+ Y+  DFPE+Y++AKF++IKSYSEDD+HKS+KY+
Sbjct:   224 VSLKEQRVTETEKLSED-VSLLDPKD-YNKIDFPETYTEAKFYVIKSYSEDDIHKSIKYS 281

Query:   281 MWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQ 340
             +W+STPNGNKKLDA+Y EAK+KS  CPVFLLFSVN SGQFVG+AEMVGPVDF+KTVEYWQ
Sbjct:   282 VWSSTPNGNKKLDASYNEAKQKSDGCPVFLLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQ 341

Query:   341 QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
             QDKW+GCFP+KW  +KD+PNSSLRHITLENNENKPVTNSRDTQEV
Sbjct:   342 QDKWIGCFPVKWHFVKDIPNSSLRHITLENNENKPVTNSRDTQEV 386

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2095938 ECT1 "evolutionarily conserved C-terminal region 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 173/314 (55%), Positives = 213/314 (67%)

Query:    81 SIFGGGQSKHNANAGYTSPISHSNNFPS---G--RNQNHRP--HLANFHHTR--PTSDAF 131
             ++  GG S  +   GY      S  +P    G  RN NH    HL N H ++  P+ D  
Sbjct:    70 NLLNGGDSIGSYPWGYIPANYPSGGYPDPRFGYDRNSNHSSFSHLMNPHSSQEVPSFDQL 129

Query:   132 GYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSG 191
             GY   +Y+N+ +YG YGN   +G  YG+FGYDSW  GRGWYPVD   K R   +G  G  
Sbjct:   130 GYNDHLYSNHGLYGLYGNVIDSGHAYGTFGYDSWKLGRGWYPVDGYRKTRSFNHGR-GYS 188

Query:   192 KENVDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGE 251
              E  D LNEL +GPR+  FKN +  + + + A  Q++ +             D ++Y+GE
Sbjct:   189 DEKADRLNELCRGPRSSDFKNPQVLNSSMLDAMKQDVSAV------------DLQRYNGE 236

Query:   252 DFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLL 311
             +FPES+  AKFF+IKSYSEDDVH  +KY  W+STP GNKKL+AAY EAKE S +CPV+LL
Sbjct:   237 NFPESFVKAKFFVIKSYSEDDVHNCIKYGAWSSTPTGNKKLNAAYYEAKENSQECPVYLL 296

Query:   312 FSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENN 371
             FSVNASGQFVG+AEMVGPVDF+KT+EYWQQDKW+GCFP+KW IIKD+PNS LRHITL NN
Sbjct:   297 FSVNASGQFVGLAEMVGPVDFNKTMEYWQQDKWIGCFPVKWHIIKDIPNSLLRHITLANN 356

Query:   372 ENKPVTNSRDTQEV 385
             ENKPVTNSRDTQEV
Sbjct:   357 ENKPVTNSRDTQEV 370

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019722 "calcium-mediated signaling" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

TAIR|locus:2089280 ECT5 "AT3G13060" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
 Identities = 141/258 (54%), Positives = 172/258 (66%)

Query:   131 FGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDS-WISGRGWYPVDSKYKPRGRGYGASG 189
             +G+ S   + N  Y H G   + G  YGS    +  +  +GW  VD+  + RGR    S 
Sbjct:   278 YGFGSGSNSYNRGYMHSGGRGQ-GSNYGSRLISNVGMGNQGWIGVDNS-RGRGRVSDPSL 335

Query:   190 SGKEN--VDGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEK 247
              G  N   D LNE N+GPRA   K Q       V    + L S+  + ++N     + E+
Sbjct:   336 GGAYNGTFDILNEQNRGPRASKPKTQ-------VL---EELDSAADSKKNNKGSAKEHEE 385

Query:   248 YSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCP 307
              +  DF   Y++AK FIIKSYSED+VHKS+KYN+W STPNGNKKLDAAYREAK++   CP
Sbjct:   386 SNNADFVTDYTNAKLFIIKSYSEDNVHKSIKYNVWASTPNGNKKLDAAYREAKDEKEPCP 445

Query:   308 VFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHIT 367
             +FLLFSVNAS QF GVAEMVGPVDF+K+V+YWQQDKW G FP+KW IIKDVPNS  RHI 
Sbjct:   446 LFLLFSVNASSQFCGVAEMVGPVDFEKSVDYWQQDKWSGQFPVKWHIIKDVPNSQFRHII 505

Query:   368 LENNENKPVTNSRDTQEV 385
             LENN+NKPVTNSRDTQEV
Sbjct:   506 LENNDNKPVTNSRDTQEV 523

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2023807 ECT7 "AT1G48110" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
 Identities = 112/201 (55%), Positives = 142/201 (70%)

Query:   191 GKENV--DGLNELNKGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKY 248
             G  N+  D + E N+G R++   NQ       +  K    K+  +  E N+ + P +  Y
Sbjct:   259 GHANIIPDTVREQNRGRRSRALGNQ-------LIVKAYTTKAGNADAEGNIVINPSQ--Y 309

Query:   249 SGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAK----EKSS 304
             + ED    YS+AKFF+IKSYSEDDVHKS+KYN+W+ST +GNKKL +AY +A+    EKS 
Sbjct:   310 NKEDLRIDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLHGNKKLQSAYEDAQRIATEKSC 369

Query:   305 DCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLR 364
             +CP+FL FSVNASG F G+AEM GPV FDK +++WQQDKW G FP+KW IIKDVPNS  R
Sbjct:   370 ECPIFLFFSVNASGLFCGMAEMTGPVSFDKDMDFWQQDKWSGSFPVKWHIIKDVPNSYFR 429

Query:   365 HITLENNENKPVTNSRDTQEV 385
             HI L+NNENKPVTNSRDTQE+
Sbjct:   430 HIILQNNENKPVTNSRDTQEI 450

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010494 ECT9 "AT1G27960" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
 Identities = 119/243 (48%), Positives = 157/243 (64%)

Query:   149 NTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRG-YGASGSGK--ENVDGLNELNKGP 205
             N F  GP +G   +D++ S       +  Y    R  + AS S    EN   L  L++  
Sbjct:   216 NDFNMGPAHGGL-HDAFESAANLSYREQAYAQCKRSPFSASSSSPTWENDYNLPPLDEA- 273

Query:   206 RAKGFKNQEGFDPATV---AAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKF 262
             R++ + N     PA +       +  ++S    +  +      +++  ++    + DAKF
Sbjct:   274 RSESY-NDFSHCPAMLDMLTESNRGPRASRLNSKSKMISYDRVDRFCQQELLSQFRDAKF 332

Query:   263 FIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVG 322
             F+IKSYSED+VHKS+K+ +W ST NGNKKLDAAYREAK+K   CPVFLLFSVNAS QF G
Sbjct:   333 FVIKSYSEDNVHKSIKHCVWASTKNGNKKLDAAYREAKKKDVACPVFLLFSVNASSQFCG 392

Query:   323 VAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDT 382
             VAEMVGPVDF+ +VEYWQQD+W G FP++WLI+KDVPNS  RHI +E+N+NKPVTNSRDT
Sbjct:   393 VAEMVGPVDFNTSVEYWQQDRWSGHFPVQWLIVKDVPNSLFRHIIIESNDNKPVTNSRDT 452

Query:   383 QEV 385
             QEV
Sbjct:   453 QEV 455

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016571 "histone methylation" evidence=RCA

TAIR|locus:2088995 ECT6 "AT3G17330" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 150/367 (40%), Positives = 195/367 (53%)

Query:    32 QRPNYQY-PYLDPNSSHGRGGLSTVVPSPSYQDPGYSFDGIHSPITWLDTSIFGGGQSKH 90
             Q P   Y PY+ P +S G    S V     Y DP Y      SP T++   I    Q   
Sbjct:    52 QSPYNPYNPYI-PGASIGVDS-SFVGFQQYYSDPPYE-SAASSP-TYVPYVI----QPDM 103

Query:    91 NANAGYTSPISHSNNFPS-GRNQNHRPHLANFHHTRPTSDAFG-YMSQMYANNPMYGHYG 148
              +N+   S +++       G  Q +   +A      P S   G Y       N       
Sbjct:   104 VSNSSTDSLVANGGQSDGRGSMQRNGSAIAGLPKDAPKSTTTGQYKQPGIPKNVSTTASA 163

Query:   149 NTFRAGPGYGS--FGYDSWISGRGWYPVDS-KYKPRGRGYGASGSGKENVDG---LNELN 202
             ++ +    Y +    Y       G   + S  YKP  + Y A G    N  G    +E N
Sbjct:   164 HSLQGKTAYANTLLPYGKSDIANGVSSIASYSYKPCSKIYDARGDN--NTTGSTYTSEQN 221

Query:   203 KGPRAKGFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKF 262
             +G R +  +NQ       +  K    K+  +  E N+ + PD+  Y+ EDF   YSDA+F
Sbjct:   222 RGSRTRRSRNQ-------LIVKAYTTKAGNADAEGNIVINPDR--YNKEDFSIEYSDARF 272

Query:   263 FIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAK----EKSSDCPVFLLFSVNASG 318
             F+IKSYSEDDVHKS+KY +W+ST NGNKKL + Y +A+    EKS +CP+FL FSVN+SG
Sbjct:   273 FVIKSYSEDDVHKSIKYGVWSSTLNGNKKLQSVYEDAQRIATEKSRECPIFLFFSVNSSG 332

Query:   319 QFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTN 378
              F GVAEM GPV FD+ +++WQQDKW G FP+KW IIKDVPNS  RHI L NNENKPVTN
Sbjct:   333 LFCGVAEMTGPVSFDRDMDFWQQDKWSGSFPVKWHIIKDVPNSYFRHIILHNNENKPVTN 392

Query:   379 SRDTQEV 385
             SRDTQE+
Sbjct:   393 SRDTQEI 399

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2207405 ECT8 "AT1G79270" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 119/227 (52%), Positives = 154/227 (67%)

Query:   168 GRGWYPVDSKYKPRG-----RGYGASGSGKENVDGLNELNKGPRAKGFKNQEGFDPATVA 222
             GR  YP+D   K  G         A    KEN   +N+L  G       N E  +  ++ 
Sbjct:   234 GRIAYPMDPVKKKSGALNRDETEKAKARTKENGTSMNDLANGQ--DHITNGE-CESCSLD 290

Query:   223 AKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMW 282
             A+G N +S+       +  +  +++Y+   F   Y +A FF+IKSYSEDD+HKS+KYN+W
Sbjct:   291 AEG-NERSN------GVGSVIRRDQYNLPSFQTKYEEAIFFVIKSYSEDDIHKSIKYNVW 343

Query:   283 TSTPNGNKKLDAAYREAKEKSSD----CPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEY 338
             +ST NGNKKLD+AY+E+++K++D    CPVFL FSVNASGQF GVAEM+G VD++K++E+
Sbjct:   344 SSTLNGNKKLDSAYQESQKKAADKSGKCPVFLFFSVNASGQFCGVAEMIGRVDYEKSMEF 403

Query:   339 WQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
             WQQDKW G FP+KW IIKDVPN  LRHI LENNENKPVTNSRDTQEV
Sbjct:   404 WQQDKWTGYFPVKWHIIKDVPNPQLRHIILENNENKPVTNSRDTQEV 450

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2161213 ECT10 "evolutionarily conserved C-terminal region 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 129/346 (37%), Positives = 185/346 (53%)

Query:    61 YQDPGYSFDGIHSPITWLDTSI----------FGGGQSKHNANAGYTSPISHSNNFPSGR 110
             YQ PGY F+    P   L+  I          FG   + H   +    P S +   P G+
Sbjct:   117 YQYPGYGFNPY--PSVMLEGQIPVSPAYYPQPFGAPSAMHYLPSDI-DPTSAAYMIPYGQ 173

Query:   111 --NQNHRPHLANFHHTR--PTSDAFGYMSQMYANNPMYGHYGNTFRAGPGYGSF----GY 162
                 N+  +  +   T   P     G +     N      +G+   +    G +     Y
Sbjct:   174 YGGGNYSGNQGDISLTSHIPYPQTMGILGPYDHNASQVALHGSGVASSSSLGGYYHVGSY 233

Query:   163 DSWISGRGWYPVDSKYKPRGRGYGASGSGKENVDGLNEL--NKGPRAKG-FKNQEGFDPA 219
              +  S   +Y VD++ +            + ++   ++L  N+GPRA    K++    P 
Sbjct:   234 QNPSSTPSYYGVDNRVRLTPDIGKRREKDQGSISSTSDLYGNRGPRASSRVKSKNSSKPC 293

Query:   220 TVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKY 279
             +      +  SS + P  +L        Y+  +F   Y +AKFFI+KS+SED+VH+S+KY
Sbjct:   294 STIGDSAS-DSSTAGPNPSL--------YNHPEFVTDYKNAKFFIVKSFSEDNVHRSIKY 344

Query:   280 NMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYW 339
             N+W STP+GNKKLD AYR+A++    CP+FL FSVNASGQF GV+EMVGPVDF+K   YW
Sbjct:   345 NVWASTPHGNKKLDTAYRDAEKMGGKCPIFLFFSVNASGQFCGVSEMVGPVDFEKDAGYW 404

Query:   340 QQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEV 385
             QQD+W G FP+KW I+KD+PN+   HI L+NN+NKPVT+SRD+QEV
Sbjct:   405 QQDRWSGQFPVKWHIVKDIPNNRFCHILLQNNDNKPVTHSRDSQEV 450

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2024286 ECT11 "AT1G09810" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 121/302 (40%), Positives = 171/302 (56%)

Query:   101 SHSNNFPSG--RNQNHRPHLAN--FHHTRPTSDAFGYMSQMYANNPMYGHYGNTFRAGPG 156
             +H+ +F  G  R++N     A+      RP        +   A  P+ G++    R  P 
Sbjct:    61 AHTTDFRKGNHRDKNSSDVYADSTLRGDRPKGSNCLSQTSFSAPKPL-GNFNGAGRLPPN 119

Query:   157 YGSFGYDSWISGR---GWYPVDSKYKPRGRGYGASGSGKENVDGL---NELNKGPRAKGF 210
               +  +     G+   G +   S  K     Y    +G  N +G     + NK P   G 
Sbjct:   120 TQAHAFRPPFKGKEAAGQFLTFSNQKTSCVPYSGYINGNSN-NGFWDQRDHNKKPERNGE 178

Query:   211 KNQEGFDPATVAAKGQNLKSSESTP---EDNLPLIPDKEKYSGEDFPESYSDAKFFIIKS 267
              +          A  +    SES+P    ++  L   +E Y+  DF   Y DAKFF+IKS
Sbjct:   179 SDYLVELKCGPRANAKTRPPSESSPLKQNNSFALALRREMYNLPDFQTDYEDAKFFVIKS 238

Query:   268 YSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDC----PVFLLFSVNASGQFVGV 323
             YSEDDVHKS+KY++W+ST NGNKKLDAA+R+A+ K+ +     P+FL FSVNAS QFVG+
Sbjct:   239 YSEDDVHKSIKYSVWSSTINGNKKLDAAFRDAETKTLEDGKKRPIFLFFSVNASRQFVGL 298

Query:   324 AEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQ 383
             AEMVG VDF+K +++WQ DKW G FP++W ++KD+PN  LRHI L+NNE+KPVT++RDT 
Sbjct:   299 AEMVGYVDFNKDLDFWQVDKWSGFFPVEWHVVKDIPNWELRHIILDNNEDKPVTHTRDTH 358

Query:   384 EV 385
             E+
Sbjct:   359 EI 360

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	410
pfam04146	135	pfam04146, YTH, YT521-B-like domain	1e-61

>gnl|CDD|217926 pfam04146, YTH, YT521-B-like domain

 Score =  194 bits (496), Expect = 1e-61
 Identities = 67/127 (52%), Positives = 88/127 (69%), Gaps = 8/127 (6%)

Query: 261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQF 320
           +FFIIKSY+ED+VH S+KY +W ST + NKKL+ A++EA+      PV+L+FSVN SG+F
Sbjct: 1   RFFIIKSYNEDNVHLSIKYGVWASTSHNNKKLNKAFKEAE------PVYLIFSVNKSGKF 54

Query: 321 VGVAEMVGPVDFDKTV--EYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTN 378
            G A M  P+DFD T   +     KW G F ++WL +KD+P   LRH+   NNENKPVT 
Sbjct: 55  CGYARMTSPIDFDSTANSQDSSSQKWGGPFKVEWLSVKDLPFHRLRHLKNPNNENKPVTI 114

Query: 379 SRDTQEV 385
           SRD QE+
Sbjct: 115 SRDGQEI 121

A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	410
KOG1901	487	consensus Uncharacterized high-glucose-regulated p	100.0
PF04146	140	YTH: YT521-B-like domain; InterPro: IPR007275 A pr	100.0
KOG1902	441	consensus Putative signal transduction protein inv	100.0
PRK00809	144	hypothetical protein; Provisional	94.97
PF01878	143	EVE: EVE domain; InterPro: IPR002740 The EVE domai	84.08

>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]

Probab=100.00  E-value=1.9e-70  Score=561.27  Aligned_cols=271  Identities=53%  Similarity=0.803  Sum_probs=236.7

Q ss_pred             CCCccCccccCCCCcccCCCcccCCCCCCCCCCCCCCCCCccccCCCccccCCCCCCCCCCCCC-CcccccccCCCCCCC
Q 015281          130 AFGYMSQMYANNPMYGHYGNTFRAGPGYGSFGYDSWISGRGWYPVDSKYKPRGRGYGASGSGKE-NVDGLNELNKGPRAK  208 (410)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~w~~~~~k~~~r~~~~~~~~~~~~-~~d~~~e~nrgpr~~  208 (410)
                      ..+|.+.++.+.+.||.+..+...+..|+...|.....+|+|..+++..+..+ ........++ ..+.++|+|||||+.
T Consensus       176 ~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~nrg~~s~  254 (487)
T KOG1901|consen  176 AQGYYDQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWG-INYPRLPSDEAGSDSLNEQNRGPRSS  254 (487)
T ss_pred             ccccccccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCccccc-ccCCCccccccccccccccccCcccc
Confidence            57788889988889999888877788999999999999999999986544333 2222223333 378999999999999


Q ss_pred             CCCCCCCCCCceecccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEecCChhhHHHHhhcCeeecCCch
Q 015281          209 GFKNQEGFDPATVAAKGQNLKSSESTPEDNLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNG  288 (410)
Q Consensus       209 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~df~~~~~~aRFFIIKS~nedNIhkSikygVWaTTp~n  288 (410)
                      ..+++.........+...       +......+++++++||.++|+..+.+||||||||++|||||+||||+||++|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~-------s~~~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~G  327 (487)
T KOG1901|consen  255 DSRGQDINSSGPTEAGSA-------SAPESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNG  327 (487)
T ss_pred             cccCccccCCcchhcccc-------ccccccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCC
Confidence            998887655433333221       1212235788999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCCCCCCCcccccccccccccceeEEEeecCCCCCcccccc
Q 015281          289 NKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITL  368 (410)
Q Consensus       289 nkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~AeM~Spvdf~k~~~~Wqqdkw~G~F~VkWl~vkdVPf~~lkHI~N  368 (410)
                      |||||+||++++++.++||||||||||.||||||+|||++||||+++++||+||||.|.|+|+||+|||||+..|+||++
T Consensus       328 NKkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~L  407 (487)
T KOG1901|consen  328 NKKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIIL  407 (487)
T ss_pred             chhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccCCCCcccChHHHHHHHHHHHhccccccccc
Q 015281          369 ENNENKPVTNSRDTQEVCPFLFLSLIFILLLLCFVTQKHK  408 (410)
Q Consensus       369 ~~NeNKPVt~SRDgQEI~~e~G~qLLkIF~~~~~~~q~~~  408 (410)
                      ++|||||||++||+|||.+++|+|||+||..+.++|-.-|
T Consensus       408 eNNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiLD  447 (487)
T KOG1901|consen  408 ENNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSILD  447 (487)
T ss_pred             ecCCCCCcccccccceecHHHHHHHHHHHHhhcceeeecc
Confidence            9999999999999999999999999999999998875443

>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []

Probab=100.00  E-value=3.6e-51  Score=360.38  Aligned_cols=136  Identities=46%  Similarity=0.818  Sum_probs=114.2

Q ss_pred             CceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCCCCCCCccc
Q 015281          259 DAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEY  338 (410)
Q Consensus       259 ~aRFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~AeM~Spvdf~k~~~~  338 (410)
                      ++|||||||++++||++|++||||+|+++++++|++||+++      ++||||||||+|++|||||+|+|+++++....+
T Consensus         1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~------~~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~   74 (140)
T PF04146_consen    1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKES------RNVYLFFSVNGSGHFQGYARMTSPIDPDSPKPF   74 (140)
T ss_dssp             --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHS------S-EEEEEEETTTSEEEEEEEEECECCSSS----
T ss_pred             CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhC------CCEEEEEeecCcceEEEEEEEccCCCCcccCcc
Confidence            58999999999999999999999999999999999999998      489999999999999999999999999988999


Q ss_pred             cc----ccccccccceeEEEeecCCCCCccccccCCCCCCCcccCCCCcccChHHHHHHHHHHHhc
Q 015281          339 WQ----QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLLL  400 (410)
Q Consensus       339 Wq----qdkw~G~F~VkWl~vkdVPf~~lkHI~N~~NeNKPVt~SRDgQEI~~e~G~qLLkIF~~~  400 (410)
                      |.    ..+|+|.|+|+||++++|||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus        75 w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~~G~~l~~~f~~~  140 (140)
T PF04146_consen   75 WQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPEIGEQLLKIFDNQ  140 (140)
T ss_dssp             --SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CCHHHHHHHHCGT-
T ss_pred             ccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHHHHHHHHHHHhhC
Confidence            95    368999999999999999999999999999999999999999999999999999999864

It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.

>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]

Probab=100.00  E-value=8.2e-44  Score=351.80  Aligned_cols=150  Identities=35%  Similarity=0.545  Sum_probs=137.7

Q ss_pred             CCCCCCCCCCCCCCceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEE
Q 015281          246 EKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAE  325 (410)
Q Consensus       246 ~qyN~~df~~~~~~aRFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~Ae  325 (410)
                      ++++....+.  ..+|||||||.|.+||++|++.|||+||+.|++||+.||+++      ..||||||||.||||||||+
T Consensus        60 ~~~~~ss~~~--~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s------~~ViLIFSVn~SghFQG~Ar  131 (441)
T KOG1902|consen   60 DQTSKLKYVL--QDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSS------RSVILIFSVNESGHFQGFAR  131 (441)
T ss_pred             hhcccccccC--CceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhc------CcEEEEEEecccccchhhhh
Confidence            4555554444  689999999999999999999999999999999999999998      58999999999999999999


Q ss_pred             eeCCCCCCCCcccccc-----cccccccceeEEEeecCCCCCccccccCCCCCCCcccCCCCcccChHHHHHHHHHHHhc
Q 015281          326 MVGPVDFDKTVEYWQQ-----DKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLLL  400 (410)
Q Consensus       326 M~Spvdf~k~~~~Wqq-----dkw~G~F~VkWl~vkdVPf~~lkHI~N~~NeNKPVt~SRDgQEI~~e~G~qLLkIF~~~  400 (410)
                      |+|+|-..++...|.+     ..|++.|+||||++++|||.++.||+|||||||||++|||||||++++|+|||.|+...
T Consensus       132 MsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~Ll~~~  211 (441)
T KOG1902|consen  132 MSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLLLPPD  211 (441)
T ss_pred             hcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHhcCCC
Confidence            9999988888767865     67999999999999999999999999999999999999999999999999999999876


Q ss_pred             ccc
Q 015281          401 CFV  403 (410)
Q Consensus       401 ~~~  403 (410)
                      +-.
T Consensus       212 p~~  214 (441)
T KOG1902|consen  212 PSI  214 (441)
T ss_pred             cch
Confidence            543

>PRK00809 hypothetical protein; Provisional

Probab=94.97  E-value=0.12  Score=46.78  Aligned_cols=122  Identities=13%  Similarity=0.183  Sum_probs=74.6

Q ss_pred             eEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC------CCCCeeEEEEeeCCCCCCC
Q 015281          261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN------ASGQFVGVAEMVGPVDFDK  334 (410)
Q Consensus       261 RFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN------~Sg~FqG~AeM~Spvdf~k  334 (410)
                      +|+|+=+ ++||+..+.++|||-.....-.-|.    ..    .....+||++-+      .-..|.|+|++++..-.+.
T Consensus         2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr----~M----k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~   72 (144)
T PRK00809          2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIE----KV----KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDS   72 (144)
T ss_pred             ceEEEec-CHHHHHHHHhCCEeecchhhhhHHh----hC----CCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCC
Confidence            6777777 8999999999999999654222111    11    124678888887      5789999999998752222


Q ss_pred             Cccccc------ccccccccceeEEEeec--CCCCCcc----ccccCCCCCCCc-ccCCCCcccChHHHHHHH
Q 015281          335 TVEYWQ------QDKWVGCFPLKWLIIKD--VPNSSLR----HITLENNENKPV-TNSRDTQEVCPFLFLSLI  394 (410)
Q Consensus       335 ~~~~Wq------qdkw~G~F~VkWl~vkd--VPf~~lk----HI~N~~NeNKPV-t~SRDgQEI~~e~G~qLL  394 (410)
                      + .+|.      .+.+--..+|+++...+  ||...|.    -|++.-.=...+ ..++  .||+.+--+-|+
T Consensus        73 t-~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L~~~L~fik~~~~w~~~l~R~~~--~~I~~~d~~~I~  142 (144)
T PRK00809         73 T-PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPLIPKLKFIENKKQWSGHLRNRAM--RPIPEEDYKLIE  142 (144)
T ss_pred             c-cCCCccccCCCCCceEEEEEEEeeecCCcccHHHHHhhhhhhhcccccchhhhcCCC--ccCCHHHHHHHh
Confidence            2 2332      22233467899998888  7765551    112211101222 5566  788777665444

>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily

Probab=84.08  E-value=3.5  Score=36.20  Aligned_cols=128  Identities=14%  Similarity=0.221  Sum_probs=63.7

Q ss_pred             eEEEEecC----ChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC-CCCCeeEEEEeeCCCCCC--
Q 015281          261 KFFIIKSY----SEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN-ASGQFVGVAEMVGPVDFD--  333 (410)
Q Consensus       261 RFFIIKS~----nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN-~Sg~FqG~AeM~Spvdf~--  333 (410)
                      +|+|+|+.    +-+++ .-.+..+|.-..+...+-  ++++.+   . ..-+||+.-. ..+.|.|+|+.++..-.+  
T Consensus         1 ~YWl~~~~P~~~~~~~~-~~~~~~~~~gv~~~~~~~--~l~~mk---~-GD~vifY~s~~~~~~ivai~~V~~~~~~d~~   73 (143)
T PF01878_consen    1 RYWLLKANPENFSIDDL-EHWGVTVWDGVRNYQARK--NLKRMK---P-GDKVIFYHSGCKERGIVAIGEVVSEPYPDPT   73 (143)
T ss_dssp             -EEEEEEBTTTSHHHHH-HHHSEEECHTEEEHHHHH--HHHC-----T-T-EEEEEETSSSS-EEEEEEEEEEEEEE-GG
T ss_pred             CEEEEEeCCcccCHHHh-cccceEEEcCEeehhhhh--hhhcCC---C-CCEEEEEEcCCCCCEEEEEEEEeccccCCCc
Confidence            58999997    55555 444455555443322221  444432   2 3466667666 679999999999864221  


Q ss_pred             ---CCcccccccc--cccccceeEEEeec--CCCCCccccccCCCCCCCcccC-CCCcccChHHHHHHHHH
Q 015281          334 ---KTVEYWQQDK--WVGCFPLKWLIIKD--VPNSSLRHITLENNENKPVTNS-RDTQEVCPFLFLSLIFI  396 (410)
Q Consensus       334 ---k~~~~Wqqdk--w~G~F~VkWl~vkd--VPf~~lkHI~N~~NeNKPVt~S-RDgQEI~~e~G~qLLkI  396 (410)
                         ....++....  ....++|+++..-+  |+...|+.. ..+.+-.-+... .--.+|..+.-..|+++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk~~-~~l~~l~~i~~~r~s~~~it~~~~~~I~~~  143 (143)
T PF01878_consen   74 AFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELKAE-PELENLSFIRNKRLSVFPITEEDFEAIMEM  143 (143)
T ss_dssp             GTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHHC--GGGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred             cccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHhcC-CccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence               1111122211  23467888886554  444555432 112222223222 33457777777666654

The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	410
2yud_A	180	Solution Structure Of The Yth Domain In Yth Domain-		3e-12
2yu6_A	141	Solution Structure Of The Yth Domain In Yth Domain-		3e-11

>pdb|2YUD|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 1 (Putative Splicing Factor Yt521) Length = 180

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 257 YSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNA 316
             DA+FF+IKS + ++V  +    +W++ P   KKL+ A+R A+       V L+FSV  
Sbjct: 23  LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRE 76
Query: 317 SGQFVGVAEMVGPVDFDKTVEYW-----QQDKWV-GCFPLKWLIIKDVPNSSLRHITLEN 370
           SG+F G A +        +  +W        K + G F + W+  +++P +   H+T   
Sbjct: 77  SGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPW 136
Query: 371 NENKPVTNSRDTQEV 385
           NE+KPV   RD QE+
Sbjct: 137 NEHKPVKIGRDGQEI 151

>pdb|2YU6|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 2 Length = 141

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 7/130 (5%)
Query: 258 SDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNAS 317
           S  ++FI+KS +  ++  S +  +W++TP+  +KL+ A+ E+        V+L+FSV  S
Sbjct: 6   SGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWES------SIVYLVFSVQGS 59
Query: 318 GQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVT 377
           G F G + M   +  +K+ + W      G F ++W+  + +P     H+    N+NK V 
Sbjct: 60  GHFQGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQ 118
Query: 378 NSRDTQEVCP 387
            SRD QE+ P
Sbjct: 119 ISRDGQELEP 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	410
2yu6_A	141	YTH domain-containing protein 2; structural genomi	2e-56
2yud_A	180	YTH domain-containing protein 1; structure genomic	6e-52
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 141

 Score =  181 bits (460), Expect = 2e-56
 Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 7/132 (5%)

Query: 256 SYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN 315
             S  ++FI+KS +  ++  S +  +W++TP+  +KL+ A+ E+        V+L+FSV 
Sbjct: 4   GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------IVYLVFSVQ 57

Query: 316 ASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKP 375
            SG F G + M   +  +K+   W      G F ++W+  + +P     H+    N+NK 
Sbjct: 58  GSGHFQGFSRMSSEIGREKSQ-DWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKK 116

Query: 376 VTNSRDTQEVCP 387
           V  SRD QE+ P
Sbjct: 117 VQISRDGQELEP 128

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 180

 Score =  171 bits (433), Expect = 6e-52
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 12/152 (7%)

Query: 242 IPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKE 301
           +    K           DA+FF+IKS + ++V  +    +W++ P   KKL+ A+R A+ 
Sbjct: 8   VRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR- 66

Query: 302 KSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKTVEYWQ------QDKWVGCFPLKWLII 355
                 V L+FSV  SG+F G A +        +  +W            G F + W+  
Sbjct: 67  -----SVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICR 121

Query: 356 KDVPNSSLRHITLENNENKPVTNSRDTQEVCP 387
           +++P +   H+T   NE+KPV   RD QE+  
Sbjct: 122 RELPFTKSAHLTNPWNEHKPVKIGRDGQEIEL 153

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 46/267 (17%), Positives = 64/267 (23%), Gaps = 97/267 (36%)

Query: 185 YGASGSGKENVDGLNELNKGPRAKGFKNQ-------EGFDPATVAAKGQNLKSSESTPED 237
            G  GSGK     L+             +           P TV    Q L         
Sbjct: 156 DGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 238 NLPLIPDKEKYSGEDFPESYSDAKFFIIKSYSE-----DDV------------------- 273
           +        K                  K Y        +V                   
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 274 ---------------HKSVKYNMWTSTPNGNKKLDAAY---------REAKEKSSDCPVF 309
                          H S+ ++  T TP+  K L   Y         RE    +   P  
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---P-- 327

Query: 310 LLFSVNASGQFVGVAEMVGPVDFDKTVEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLE 369
              S+        +AE +   D   T + W+    V C  L   II+    SSL    LE
Sbjct: 328 RRLSI--------IAESI--RDGLATWDNWKH---VNCDKLT-TIIE----SSLNV--LE 367

Query: 370 NNENKPVTNSRDTQEVCPFLFLSL-IF 395
             E +              +F  L +F
Sbjct: 368 PAEYRK-------------MFDRLSVF 381

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	410
2yu6_A	141	YTH domain-containing protein 2; structural genomi	100.0
2yud_A	180	YTH domain-containing protein 1; structure genomic	100.0
2hd9_A	145	UPF0310 protein PH1033; pyrococcus horikoshii OT3,	96.68
2p5d_A	147	UPF0310 protein mjecl36; NPPSFA, national project	96.45

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=6.9e-55  Score=385.30  Aligned_cols=137  Identities=29%  Similarity=0.495  Sum_probs=131.8

Q ss_pred             CCCCceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 015281          256 SYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQFVGVAEMVGPVDFDKT  335 (410)
Q Consensus       256 ~~~~aRFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~FqG~AeM~Spvdf~k~  335 (410)
                      ...++|||||||++++|||+|++||||+||++||++|++||+++      .+||||||||+||+|||||+|++++|+ ..
T Consensus         4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~------~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~   76 (141)
T 2yu6_A            4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWES------SIVYLVFSVQGSGHFQGFSRMSSEIGR-EK   76 (141)
T ss_dssp             CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHS------SCEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred             CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcC------CcEEEEEEECCCCeEEEEEEEcccCCC-CC
Confidence            35799999999999999999999999999999999999999998      499999999999999999999999999 55


Q ss_pred             cccccccccccccceeEEEeecCCCCCccccccCCCCCCCcccCCCCcccChHHHHHHHHHHHh
Q 015281          336 VEYWQQDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSLIFILLL  399 (410)
Q Consensus       336 ~~~Wqqdkw~G~F~VkWl~vkdVPf~~lkHI~N~~NeNKPVt~SRDgQEI~~e~G~qLLkIF~~  399 (410)
                      ..+|++++|+|.|+|+||+++||||..++||+|++||||||+++||||||++++|++||+||++
T Consensus        77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~  140 (141)
T 2yu6_A           77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWER  140 (141)
T ss_dssp             CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGT
T ss_pred             CccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhh
Confidence            6679999999999999999999999999999999999999999999999999999999999985

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=8.1e-55  Score=398.61  Aligned_cols=155  Identities=29%  Similarity=0.429  Sum_probs=145.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCCCC
Q 015281          240 PLIPDKEKYSGEDFPESYSDAKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNASGQ  319 (410)
Q Consensus       240 ~~~~~~~qyN~~df~~~~~~aRFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~Sg~  319 (410)
                      ...+++++||+.+++.  +++|||||||++++|||+|++||||+||++||++|++||+++      .+||||||||+||+
T Consensus         8 ~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~------~~V~L~FSVn~Sg~   79 (180)
T 2yud_A            8 VRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSA------RSVILIFSVRESGK   79 (180)
T ss_dssp             CCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHS------SCEEEEEEETTTSE
T ss_pred             hhhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhC------CeEEEEEEeCCCCc
Confidence            3445789999988875  799999999999999999999999999999999999999998      48999999999999


Q ss_pred             eeEEEEeeCCCCCCCCccccc------ccccccccceeEEEeecCCCCCccccccCCCCCCCcccCCCCcccChHHHHHH
Q 015281          320 FVGVAEMVGPVDFDKTVEYWQ------QDKWVGCFPLKWLIIKDVPNSSLRHITLENNENKPVTNSRDTQEVCPFLFLSL  393 (410)
Q Consensus       320 FqG~AeM~Spvdf~k~~~~Wq------qdkw~G~F~VkWl~vkdVPf~~lkHI~N~~NeNKPVt~SRDgQEI~~e~G~qL  393 (410)
                      |||||+|+++++++....+|+      +++|+|.|+|+||+++||||..++||+|++||||||+++||||||++++|++|
T Consensus        80 F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L  159 (180)
T 2yud_A           80 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL  159 (180)
T ss_dssp             EEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHH
T ss_pred             EEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHH
Confidence            999999999999988888896      46799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccc
Q 015281          394 IFILLLLCF  402 (410)
Q Consensus       394 LkIF~~~~~  402 (410)
                      |+||..+..
T Consensus       160 ~~lf~~~~~  168 (180)
T 2yud_A          160 CLLFPPDES  168 (180)
T ss_dssp             HHHSCCCSS
T ss_pred             HHhcccCcC
Confidence            999987654

>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A

Probab=96.68  E-value=0.0052  Score=53.95  Aligned_cols=125  Identities=13%  Similarity=0.191  Sum_probs=81.0

Q ss_pred             eEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCC--------CCeeEEEEeeCCCCC
Q 015281          261 KFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNAS--------GQFVGVAEMVGPVDF  332 (410)
Q Consensus       261 RFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~S--------g~FqG~AeM~Spvdf  332 (410)
                      +|.|+|| +.|++...++.|+|-. .+..+..-++   -    .....+|||+-+..        ..|.|+|++++..-.
T Consensus         2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~---m----k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~   72 (145)
T 2hd9_A            2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSR---V----KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV   72 (145)
T ss_dssp             CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTT---C----CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred             ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHh---C----CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence            5899999 8999999999999977 5544422221   1    12367778887665        899999999986522


Q ss_pred             CCCccccc-----ccccccccceeEEEeecCCCCCccccccCCCCC-----CCcccCCCCcccChHHHHHHHHHH
Q 015281          333 DKTVEYWQ-----QDKWVGCFPLKWLIIKDVPNSSLRHITLENNEN-----KPVTNSRDTQEVCPFLFLSLIFIL  397 (410)
Q Consensus       333 ~k~~~~Wq-----qdkw~G~F~VkWl~vkdVPf~~lkHI~N~~NeN-----KPVt~SRDgQEI~~e~G~qLLkIF  397 (410)
                      +.+ .+|.     .+..--...|+++.+..||+..+.. .+++=.|     .++ .-+--++|+.+....||+.+
T Consensus        73 D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m  144 (145)
T 2hd9_A           73 DFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL  144 (145)
T ss_dssp             CCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred             CCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh-hhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence            221 1222     2222224568899899999877665 3333222     112 12338999999999988753

>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}

Probab=96.45  E-value=0.005  Score=54.17  Aligned_cols=124  Identities=14%  Similarity=0.136  Sum_probs=77.5

Q ss_pred             ceEEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeC------CCCCeeEEEEeeCCCC--
Q 015281          260 AKFFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVN------ASGQFVGVAEMVGPVD--  331 (410)
Q Consensus       260 aRFFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN------~Sg~FqG~AeM~Spvd--  331 (410)
                      .+|.|+|+ +++++...++.|+|-. .+..+..-++   -   .. ...+||+...      .-..|.|+|++++..-  
T Consensus         4 m~YWL~~s-e~~~~~~~~~~g~wGV-n~~arn~lr~---M---k~-GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D   74 (147)
T 2p5d_A            4 MAYWLCIT-NEDNWKVIKEKKIWGV-AERYKNTINK---V---KV-GDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD   74 (147)
T ss_dssp             CCEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTT---C---CT-TCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred             ccceeeec-CHHHHHHHHHcCeeec-CHHHHHHHHh---C---CC-CCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence            47999999 6888999999999977 4443322221   1   12 3566666332      3468999999998542  


Q ss_pred             ---CCCCcccccccccccccceeEEEe--ecCCCCCcc----ccccC--CCCCCCcccCCCCcccChHHHHHHHH
Q 015281          332 ---FDKTVEYWQQDKWVGCFPLKWLII--KDVPNSSLR----HITLE--NNENKPVTNSRDTQEVCPFLFLSLIF  395 (410)
Q Consensus       332 ---f~k~~~~Wqqdkw~G~F~VkWl~v--kdVPf~~lk----HI~N~--~NeNKPVt~SRDgQEI~~e~G~qLLk  395 (410)
                         |+....|...+..--..+|+++..  ..||+..++    +|++.  |.+ .-|..+  -++|+.+.-..||+
T Consensus        75 ~t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g--v~pV~~~~~~~I~~  146 (147)
T 2p5d_A           75 SSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA--MREIPEEDYKLIVG  146 (147)
T ss_dssp             CCCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS--EEEECHHHHHHHHT
T ss_pred             CcccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHH-HHhcCC--ceECCHHHHHHHHh
Confidence               222222221222223788999988  888877776    12122  222 224555  89999998888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	410
d2hd9a1	145	Hypothetical protein PH1033 {Pyrococcus horikoshii	94.6

>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PH1033
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.60  E-value=0.039  Score=46.27  Aligned_cols=122  Identities=11%  Similarity=0.151  Sum_probs=76.6

Q ss_pred             EEEEecCChhhHHHHhhcCeeecCCchhHHHHHHHHHHHhhCCCCCEEEEEEeCCC--------CCeeEEEEeeCCCCCC
Q 015281          262 FFIIKSYSEDDVHKSVKYNMWTSTPNGNKKLDAAYREAKEKSSDCPVFLLFSVNAS--------GQFVGVAEMVGPVDFD  333 (410)
Q Consensus       262 FFIIKS~nedNIhkSikygVWaTTp~nnkKLn~AFkea~e~~~~~~V~LfFSVN~S--------g~FqG~AeM~Spvdf~  333 (410)
                      |+|+=+ ++||+...++.|+|.......+.|..-        ....-+|||+.-..        ++|.|+++.++....+
T Consensus         3 YWi~v~-s~e~~~~~~~~g~~~~~~~k~~~~~ri--------kpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~d   73 (145)
T d2hd9a1           3 YWICIT-NRENWEVIKRHNVWGVPKKHKNTLSRV--------KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVD   73 (145)
T ss_dssp             EEEEEE-CHHHHHHHHHHCEEEECGGGHHHHTTC--------CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEEC
T ss_pred             eEEEeC-CHHHHHHHHhCCEEeccCCchhhHhhC--------CCCCEEEEEeCccccCCCcccccEEEEEEEEeccceec
Confidence            666655 799999999999999975533333221        12467778885433        4799999999876444


Q ss_pred             CCccccccccccc-----ccceeEEEeecCCCCCccccccCCC--CCCC---cccCCCC-cccChHHHHHHHHH
Q 015281          334 KTVEYWQQDKWVG-----CFPLKWLIIKDVPNSSLRHITLENN--ENKP---VTNSRDT-QEVCPFLFLSLIFI  396 (410)
Q Consensus       334 k~~~~Wqqdkw~G-----~F~VkWl~vkdVPf~~lkHI~N~~N--eNKP---Vt~SRDg-QEI~~e~G~qLLkI  396 (410)
                      .+ ..|...+..+     .++|+|+.+.+||+..   |...|+  .||.   ...-|-| .||+.+-...|-+.
T Consensus        74 ~t-~i~~~~~~~~~~~P~R~~v~~~~~~ev~i~~---l~~~L~fi~~k~~W~~y~~r~g~~~I~~~D~~lI~~~  143 (145)
T d2hd9a1          74 FS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKP---LINDLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEKL  143 (145)
T ss_dssp             CC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGG---GGGGCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHHH
T ss_pred             cc-ccccccccCCceEEEEEEeEEeecccccHHH---HHhHHHhhcCchhhhHHHhcCCceecCHHHHHHHHHH
Confidence            33 3465433322     4789999999999754   332322  3332   3333443 46877766655443