Citrus Sinensis ID: 015305

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MAMLLRRVWETMSSRTCSTGDSSARPSCTTESSSLGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLATGLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNKQ
cHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccccccccEEEEcccccEEccccccccccEEEccccccccccccccccHHHHHHHHHHccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHcccccEEEEEEcccccEEEEccccccccccccEEEcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccHHHHHccccccEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHccccEEcccccccccccccccccccc
cHHHHHHHHHHHHccccccccccccccccccccccccHccccHHHHHHHHHHcccHHHHEEEEEEHcccHccccccEEEEEEHccccccccEEEEEEEccccccHHHHHcccEEEEEcccccccccEEEEEcccccEEcccccccccccccccEccccccccccHcHHHHHHHHHHHHHccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHcccccEEEEEEccccEEEEEEEccccccHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccHHHHcccHHcccccccHHHHHHHHHHHccccccHHHHHHHHcEEEcccccccccHHHcHHHHccc
MAMLLRRVWETmssrtcstgdssarpscttessslgafdqipWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHqqepwdsiffgettlgsgypyqtlaTGLSFMHiygqraqvpgsviidggsgyckfgwskydcpsgrtatflefgniespmySRLRHFFATIYSrmqvkpstqpivvsipichyddtenakASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQqnninfgsLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERfqtgeilfqprmadvrTMGLDQAVALCMDHChyaelsgddawFKTVILTggsaclpglagirnsfnkq
MAMLLRRVWetmssrtcstgdssarpsCTTEssslgafdqiPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLATGLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAclpglagirnsfnkq
MAMLLRRVWETMSSRTCSTGDSSARPSCTTESSSLGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLATGLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNKQ
**********************************LGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLATGLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGI*******
*AMLLRRVW***************************AFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDS*FF***************************AQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAEL******SLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFN**
MAMLLRRVWE***********************SLGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLATGLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNKQ
***LLRRVWE*********************SSSLGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLATGLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNS****
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SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAMLLRRVWETMSSRTCSTGDSSARPSCTTESSSLGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLATGLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query409 2.2.26 [Sep-21-2011]
Q9FKT0471 Actin-related protein 8 O yes no 0.973 0.845 0.700 1e-170
Q7XR80484 Actin-related protein 8 O yes no 0.977 0.826 0.620 1e-152
A8WAT2484 Actin-related protein 8 O N/A no 0.977 0.826 0.620 1e-152
O74258376 Actin OS=Pichia angusta ( N/A no 0.635 0.691 0.276 2e-23
Q96481336 Actin-105 (Fragment) OS=S N/A no 0.515 0.627 0.322 2e-23
P02578375 Actin-1 OS=Acanthamoeba c N/A no 0.635 0.693 0.276 3e-23
P60010375 Actin OS=Saccharomyces ce yes no 0.638 0.696 0.269 4e-23
P60011375 Actin OS=Saccharomyces ba N/A no 0.638 0.696 0.269 4e-23
P60009375 Actin OS=Candida glabrata yes no 0.638 0.696 0.269 4e-23
O65316377 Actin OS=Mesostigma virid N/A no 0.520 0.564 0.313 5e-23
>sp|Q9FKT0|ARP8_ARATH Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1 Back     alignment and function desciption
 Score =  597 bits (1540), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/408 (70%), Positives = 344/408 (84%), Gaps = 10/408 (2%)

Query: 3   MLLRRVWETMSSRTCSTGD-------SSARPSCTTESSSLGAFDQIPWDVLIQIVKLIGP 55
           M+L++VW ++ +R+ S  D           P   + SSSLGAFDQ+P D+L+QI+ ++ P
Sbjct: 1   MILKKVWGSVWNRSNSGKDLVNHQRAIDVPPLLLSSSSSLGAFDQLPMDILVQILMMMEP 60

Query: 56  KEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLATG---L 112
           K+A KL +  K+W+ + S NRLWIF+LQ  QEPWDSIFF ET+L SGYP + +++    L
Sbjct: 61  KDAVKLGLTCKAWKCVASGNRLWIFYLQCSQEPWDSIFFAETSLRSGYPLRMISSQSGEL 120

Query: 113 SFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFF 172
           SFMHIY QRAQVPGS+IIDGGSGYCKFGWSKY  PSGR+ATFLEFGNIESP+Y+RL+ FF
Sbjct: 121 SFMHIYSQRAQVPGSIIIDGGSGYCKFGWSKYASPSGRSATFLEFGNIESPIYARLQQFF 180

Query: 173 ATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQA 232
           ATI++RMQVKPS QPIVVS+P+CH+DDTE+AKASRRQLK     VLFD+NVPAVCA+NQA
Sbjct: 181 ATIFTRMQVKPSMQPIVVSLPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240

Query: 233 TLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN 292
            LALYAA+RTSGIVVNIGFQV +++PILHGKVMR+VGVEV+G GALKLTG+L+  MQ+NN
Sbjct: 241 VLALYAARRTSGIVVNIGFQVITILPILHGKVMRQVGVEVIGFGALKLTGFLKEKMQENN 300

Query: 293 INFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPR 352
           I+F SLYTVRTLKEKLCYVA DYKAELSKDTQAS+E++GEGWFTLSKERFQTGEILFQPR
Sbjct: 301 ISFQSLYTVRTLKEKLCYVALDYKAELSKDTQASVEVSGEGWFTLSKERFQTGEILFQPR 360

Query: 353 MADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLA 400
           +A +R M L QAV+LCMDHC  A L+GDD+WFKTV+LTGGSACLPGL+
Sbjct: 361 LAGMRAMSLHQAVSLCMDHCDAAGLTGDDSWFKTVVLTGGSACLPGLS 408

Arabidopsis thaliana (taxid: 3702)
>sp|Q7XR80|ARP8_ORYSJ Actin-related protein 8 OS=Oryza sativa subsp. japonica GN=ARP8 PE=2 SV=1 Back     alignment and function description
>sp|A8WAT2|ARP8_ORYSI Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8 PE=2 SV=1 Back     alignment and function description
>sp|O74258|ACT_PICAD Actin OS=Pichia angusta (strain ATCC 26012 / NRRL Y-7560 / DL-1) GN=ACT PE=3 SV=2 Back     alignment and function description
>sp|Q96481|ACT4_SOLLC Actin-105 (Fragment) OS=Solanum lycopersicum PE=3 SV=1 Back     alignment and function description
>sp|P02578|ACT1_ACACA Actin-1 OS=Acanthamoeba castellanii PE=1 SV=1 Back     alignment and function description
>sp|P60010|ACT_YEAST Actin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ACT1 PE=1 SV=1 Back     alignment and function description
>sp|P60011|ACT_SACBA Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1 Back     alignment and function description
>sp|P60009|ACT_CANGA Actin OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ACT1 PE=3 SV=1 Back     alignment and function description
>sp|O65316|ACT_MESVI Actin OS=Mesostigma viride PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query409
449463701466 PREDICTED: actin-related protein 8-like 0.970 0.851 0.752 1e-178
449519501466 PREDICTED: LOW QUALITY PROTEIN: actin-re 0.970 0.851 0.75 1e-177
224061655473 actin related protein [Populus trichocar 0.977 0.845 0.740 1e-176
297796489473 hypothetical protein ARALYDRAFT_495706 [ 0.973 0.841 0.697 1e-168
30696705471 actin-related protein 8 [Arabidopsis tha 0.973 0.845 0.700 1e-168
356508163477 PREDICTED: actin-related protein 8-like 0.977 0.838 0.701 1e-162
356559153469 PREDICTED: actin-related protein 8-like 0.968 0.844 0.693 1e-160
255581945455 Actin, macronuclear, putative [Ricinus c 0.914 0.821 0.712 1e-159
357456057471 Actin related protein [Medicago truncatu 0.977 0.849 0.669 1e-158
225463512473 PREDICTED: actin-related protein 8 [Viti 0.973 0.841 0.682 1e-158
>gi|449463701|ref|XP_004149570.1| PREDICTED: actin-related protein 8-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 304/404 (75%), Positives = 350/404 (86%), Gaps = 7/404 (1%)

Query: 1   MAMLLRRVWETMSSRTCSTGDSSARPSCTTESSSLGAFDQIPWDVLIQIVKLIGPKEAAK 60
           MAMLLR+VW ++S+R+    ++S   S   E SSLG FD+IP ++L+QI++L GPK  AK
Sbjct: 1   MAMLLRKVWGSVSTRSRLHLENS---STGFEESSLGDFDRIPVEILMQILQLAGPKTTAK 57

Query: 61  LCVVSKSWRALVS-DNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLA---TGLSFMH 116
           + ++ KSWR+LVS DN LWIFFLQ+Q EPWDS+ FGET L SGYP +T +     LSFM 
Sbjct: 58  MGMLCKSWRSLVSSDNTLWIFFLQNQLEPWDSVLFGETKLASGYPLETFSGQMMPLSFMK 117

Query: 117 IYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIY 176
           +Y +RA+VPGSVIIDGGSGYCKFGWSKYD PSGR+ATFLEFGNIESPMYSRLRHFFATIY
Sbjct: 118 VYNKRAEVPGSVIIDGGSGYCKFGWSKYDGPSGRSATFLEFGNIESPMYSRLRHFFATIY 177

Query: 177 SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLAL 236
           SRM+VK S  P+VVS+PICHYDDTE+AKASR+QLK+    VLFD+NVP+VCAINQATLAL
Sbjct: 178 SRMRVKTSFYPVVVSLPICHYDDTESAKASRQQLKEAIYSVLFDMNVPSVCAINQATLAL 237

Query: 237 YAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG 296
           YAA++TSGIVVN+GFQVTS+VPILHGKVMRKVGVEV+GLGALKLTGYLR LMQQNNI+F 
Sbjct: 238 YAARKTSGIVVNVGFQVTSIVPILHGKVMRKVGVEVVGLGALKLTGYLRELMQQNNIHFE 297

Query: 297 SLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADV 356
           S+YTVRTLKE LCYVA DY+AEL+KDTQAS E AGEGWFTLSKERFQTGEILFQPRM  V
Sbjct: 298 SMYTVRTLKENLCYVAEDYEAELTKDTQASYEAAGEGWFTLSKERFQTGEILFQPRMGGV 357

Query: 357 RTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLA 400
           R MGL +AVALCMDHCH AELS DD+WFKTV+L+GGSACLPGLA
Sbjct: 358 RAMGLHEAVALCMDHCHAAELSYDDSWFKTVVLSGGSACLPGLA 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449519501|ref|XP_004166773.1| PREDICTED: LOW QUALITY PROTEIN: actin-related protein 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224061655|ref|XP_002300588.1| actin related protein [Populus trichocarpa] gi|222847846|gb|EEE85393.1| actin related protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297796489|ref|XP_002866129.1| hypothetical protein ARALYDRAFT_495706 [Arabidopsis lyrata subsp. lyrata] gi|297311964|gb|EFH42388.1| hypothetical protein ARALYDRAFT_495706 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30696705|ref|NP_568836.2| actin-related protein 8 [Arabidopsis thaliana] gi|75309169|sp|Q9FKT0.1|ARP8_ARATH RecName: Full=Actin-related protein 8; AltName: Full=F-box protein ARP8 gi|21427471|gb|AAM53248.1|AF507916_2 actin-related protein 8B [Arabidopsis thaliana] gi|9758638|dbj|BAB09300.1| unnamed protein product [Arabidopsis thaliana] gi|21489926|tpg|DAA00031.1| TPA_exp: actin-related protein 8B; AtARP8B [Arabidopsis thaliana] gi|332009347|gb|AED96730.1| actin-related protein 8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356508163|ref|XP_003522829.1| PREDICTED: actin-related protein 8-like [Glycine max] Back     alignment and taxonomy information
>gi|356559153|ref|XP_003547865.1| PREDICTED: actin-related protein 8-like [Glycine max] Back     alignment and taxonomy information
>gi|255581945|ref|XP_002531771.1| Actin, macronuclear, putative [Ricinus communis] gi|223528607|gb|EEF30627.1| Actin, macronuclear, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357456057|ref|XP_003598309.1| Actin related protein [Medicago truncatula] gi|355487357|gb|AES68560.1| Actin related protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225463512|ref|XP_002264128.1| PREDICTED: actin-related protein 8 [Vitis vinifera] gi|296090034|emb|CBI39853.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query409
TAIR|locus:2161795471 ARP8 "AT5G56180" [Arabidopsis 0.973 0.845 0.705 2.1e-155
UNIPROTKB|Q562R1376 ACTBL2 "Beta-actin-like protei 0.525 0.571 0.304 2.5e-24
MGI|MGI:2444552376 Actbl2 "actin, beta-like 2" [M 0.525 0.571 0.308 2.5e-24
RGD|1309504376 Actbl2 "actin, beta-like 2" [R 0.525 0.571 0.304 3e-24
UNIPROTKB|H9KYU9316 ACTG2 "Actin, gamma-enteric sm 0.518 0.670 0.303 6.3e-24
WB|WBGene00000067375 act-5 [Caenorhabditis elegans 0.518 0.565 0.295 9.1e-24
SGD|S000001855375 ACT1 "Actin" [Saccharomyces ce 0.520 0.568 0.296 1e-23
POMBASE|SPBC32H8.12c375 act1 "actin Act1" [Schizosacch 0.518 0.565 0.320 1.7e-23
UNIPROTKB|F2Z3T1295 Actg1 "Actin, cytoplasmic 2" [ 0.442 0.613 0.319 2.9e-23
UNIPROTKB|P29751375 ACTB "Actin, cytoplasmic 1" [O 0.518 0.565 0.303 3e-23
TAIR|locus:2161795 ARP8 "AT5G56180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
 Identities = 288/408 (70%), Positives = 347/408 (85%)

Query:     3 MLLRRVWETMSSRTCSTGD--SSAR-----PSCTTESSSLGAFDQIPWDVLIQIVKLIGP 55
             M+L++VW ++ +R+ S  D  +  R     P   + SSSLGAFDQ+P D+L+QI+ ++ P
Sbjct:     1 MILKKVWGSVWNRSNSGKDLVNHQRAIDVPPLLLSSSSSLGAFDQLPMDILVQILMMMEP 60

Query:    56 KEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLAT--G-L 112
             K+A KL +  K+W+ + S NRLWIF+LQ  QEPWDSIFF ET+L SGYP + +++  G L
Sbjct:    61 KDAVKLGLTCKAWKCVASGNRLWIFYLQCSQEPWDSIFFAETSLRSGYPLRMISSQSGEL 120

Query:   113 SFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFF 172
             SFMHIY QRAQVPGS+IIDGGSGYCKFGWSKY  PSGR+ATFLEFGNIESP+Y+RL+ FF
Sbjct:   121 SFMHIYSQRAQVPGSIIIDGGSGYCKFGWSKYASPSGRSATFLEFGNIESPIYARLQQFF 180

Query:   173 ATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQA 232
             ATI++RMQVKPS QPIVVS+P+CH+DDTE+AKASRRQLK     VLFD+NVPAVCA+NQA
Sbjct:   181 ATIFTRMQVKPSMQPIVVSLPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240

Query:   233 TLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN 292
              LALYAA+RTSGIVVNIGFQV +++PILHGKVMR+VGVEV+G GALKLTG+L+  MQ+NN
Sbjct:   241 VLALYAARRTSGIVVNIGFQVITILPILHGKVMRQVGVEVIGFGALKLTGFLKEKMQENN 300

Query:   293 INFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPR 352
             I+F SLYTVRTLKEKLCYVA DYKAELSKDTQAS+E++GEGWFTLSKERFQTGEILFQPR
Sbjct:   301 ISFQSLYTVRTLKEKLCYVALDYKAELSKDTQASVEVSGEGWFTLSKERFQTGEILFQPR 360

Query:   353 MADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLA 400
             +A +R M L QAV+LCMDHC  A L+GDD+WFKTV+LTGGSACLPGL+
Sbjct:   361 LAGMRAMSLHQAVSLCMDHCDAAGLTGDDSWFKTVVLTGGSACLPGLS 408
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005634 "nucleus" evidence=TAS
GO:0030029 "actin filament-based process" evidence=TAS
UNIPROTKB|Q562R1 ACTBL2 "Beta-actin-like protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2444552 Actbl2 "actin, beta-like 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309504 Actbl2 "actin, beta-like 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|H9KYU9 ACTG2 "Actin, gamma-enteric smooth muscle" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00000067 act-5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
SGD|S000001855 ACT1 "Actin" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPBC32H8.12c act1 "actin Act1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z3T1 Actg1 "Actin, cytoplasmic 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P29751 ACTB "Actin, cytoplasmic 1" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XR80ARP8_ORYSJNo assigned EC number0.62070.97790.8264yesno
A8WAT2ARP8_ORYSINo assigned EC number0.62070.97790.8264N/Ano
Q9FKT0ARP8_ARATHNo assigned EC number0.70090.97310.8450yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
smart00268373 smart00268, ACTIN, Actin 1e-38
pfam00022367 pfam00022, Actin, Actin 8e-35
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 1e-25
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 3e-22
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 5e-21
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 3e-17
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 1e-15
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 3e-08
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 4e-08
pfam0064648 pfam00646, F-box, F-box domain 4e-07
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 1e-06
pfam1293747 pfam12937, F-box-like, F-box-like 1e-05
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information 
 Score =  142 bits (360), Expect = 1e-38
 Identities = 82/325 (25%), Positives = 146/325 (44%), Gaps = 72/325 (22%)

Query: 128 VIIDGGSGYCKFGWSKYDCPS-------GRT-----------ATFL--------EFGNIE 161
           ++ID GSG  K G++  D P        GR              F+            ++
Sbjct: 4   IVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKGMVGDAKDIFVGDEAQEKRGGLELK 63

Query: 162 SPMYSR-----------LRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQL 210
            P+ +              +   T ++ ++V+P   P++++ P        N K++R + 
Sbjct: 64  YPIENGIVENWDDMEKIWDY---TFFNELRVEPEEHPVLLTEP------PMNPKSNREK- 113

Query: 211 KDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVG 269
                +++F+  N PA+    QA L+LYA+ RT+G+V++ G  VT VVP++ G V+    
Sbjct: 114 ---ILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPH-A 169

Query: 270 VEVMGLGALKLTGYLRLLMQQNNINFGS---LYTVRTLKEKLCYVAADYKAELSKDTQAS 326
           ++ + +    +T YL+ L+ +    F S      VR +KEKLCYVA D++ E+    ++S
Sbjct: 170 IKRIDIAGRDITDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKLARESS 229

Query: 327 LEIAGEGWFTL--------SKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCH---YA 375
                E  + L          ERF+  EILF P +  +   G+ + V   +  C      
Sbjct: 230 ESSKLEKTYELPDGNTIKVGNERFRIPEILFSPELIGLEQKGIHELVYESIQKCDIDVRK 289

Query: 376 ELSGDDAWFKTVILTGGSACLPGLA 400
           +L      ++ ++L+GGS  +PG  
Sbjct: 290 DL------YENIVLSGGSTLIPGFG 308

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 409
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
PTZ00004378 actin-2; Provisional 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0681 645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 99.96
PRK13927334 rod shape-determining protein MreB; Provisional 99.96
PRK13929335 rod-share determining protein MreBH; Provisional 99.94
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.93
PRK13928336 rod shape-determining protein Mbl; Provisional 99.9
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.88
KOG0797 618 consensus Actin-related protein [Cytoskeleton] 99.84
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.73
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.47
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.38
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 99.18
PTZ00400 663 DnaK-type molecular chaperone; Provisional 99.15
CHL00094 621 dnaK heat shock protein 70 99.13
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 99.12
PTZ00009 653 heat shock 70 kDa protein; Provisional 99.11
PLN03184 673 chloroplast Hsp70; Provisional 99.1
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 99.1
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 99.1
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 99.1
PRK13411 653 molecular chaperone DnaK; Provisional 99.09
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 99.08
PRK01433 595 hscA chaperone protein HscA; Provisional 99.05
PRK13410 668 molecular chaperone DnaK; Provisional 99.05
PRK05183 616 hscA chaperone protein HscA; Provisional 99.02
PRK09472420 ftsA cell division protein FtsA; Reviewed 98.93
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 98.89
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.88
PRK11678450 putative chaperone; Provisional 98.85
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.82
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 98.72
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 98.46
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 98.38
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 98.19
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 98.14
PRK13917344 plasmid segregation protein ParM; Provisional 98.11
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 97.9
COG4820277 EutJ Ethanolamine utilization protein, possible ch 97.82
KOG2997366 consensus F-box protein FBX9 [General function pre 97.35
PRK10719 475 eutA reactivating factor for ethanolamine ammonia 97.15
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 97.08
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 96.96
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 96.64
PF06277 473 EutA: Ethanolamine utilisation protein EutA; Inter 96.35
KOG0281499 consensus Beta-TrCP (transducin repeats containing 96.21
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 96.1
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 95.9
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 95.88
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 95.76
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 95.69
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 95.46
PRK11031 496 guanosine pentaphosphate phosphohydrolase; Provisi 95.43
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 95.43
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 94.93
COG1548330 Predicted transcriptional regulator/sugar kinase [ 94.73
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 94.47
PRK10854 513 exopolyphosphatase; Provisional 94.37
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 94.28
COG0248 492 GppA Exopolyphosphatase [Nucleotide transport and 93.95
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 93.16
KOG3926332 consensus F-box proteins [Amino acid transport and 93.05
KOG0102 640 consensus Molecular chaperones mortalin/PBP74/GRP7 91.46
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 90.92
COG1924396 Activator of 2-hydroxyglutaryl-CoA dehydratase (HS 89.47
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 89.41
KOG4341483 consensus F-box protein containing LRR [General fu 88.86
PF06881109 Elongin_A: RNA polymerase II transcription factor 88.72
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 87.28
PRK13321256 pantothenate kinase; Reviewed 82.81
PF13013109 F-box-like_2: F-box-like domain 81.92
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 81.54
PF03309206 Pan_kinase: Type III pantothenate kinase; InterPro 80.78
COG4819 473 EutA Ethanolamine utilization protein, possible ch 80.6
PRK13324258 pantothenate kinase; Reviewed 80.27
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-61  Score=488.08  Aligned_cols=279  Identities=23%  Similarity=0.475  Sum_probs=250.4

Q ss_pred             CccccccCCCCCCCceEEEeCCCCeEEEEEeCCCCCCcccccccc-----------------cCC----------ccchH
Q 015305          112 LSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM  164 (409)
Q Consensus       112 ~s~~~~y~~~~~~~~~VVID~GS~~iKaGfage~~P~~~~~t~~~-----------------~G~----------~~~Pi  164 (409)
                      .+||+.+..     .+||||+||+++||||||++.|+.++|++++                 +|+          +.+|+
T Consensus         4 ~~~~~~~~~-----~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi   78 (380)
T PTZ00466          4 EYAKQLYSN-----QPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPI   78 (380)
T ss_pred             chHHHhccC-----CeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccc
Confidence            467777754     5799999999999999999999999998652                 232          35687


Q ss_pred             -------HHHHHHHHHHHHhhcccCCCCCCeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHH
Q 015305          165 -------YSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLAL  236 (409)
Q Consensus       165 -------~~~le~~~~~~~~~L~v~p~~~pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal  236 (409)
                             ||.++.+|+++|++|+++|+++||+++|+++++      +..|+    .+.|+||| |++|++++.++++||+
T Consensus        79 ~~G~v~dwd~~e~iw~~~f~~l~v~~~~~pvllte~~~~~------~~~re----~~~e~lFE~~~~p~~~~~~~~~lsl  148 (380)
T PTZ00466         79 NHGIIENWNDMENIWIHVYNSMKINSEEHPVLLTEAPLNP------QKNKE----KIAEVFFETFNVPALFISIQAILSL  148 (380)
T ss_pred             cCCeECCHHHHHHHHHHHHhhcccCCccCeEEEecCcccc------HHHHH----HHHHHHhccCCCCeEEEecchHHHH
Confidence                   899999999999999999999999999998764      55665    46777888 9999999999999999


Q ss_pred             HHcCCcceEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhccccc
Q 015305          237 YAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAA  313 (409)
Q Consensus       237 ~a~G~~sglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~v~~  313 (409)
                      ||+|++||+|||+|++.|+|+||+||+++.+ ++.++++||++++++|+++|++++..+.   ..+.+++|||++|||+.
T Consensus       149 ~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~  227 (380)
T PTZ00466        149 YSCGKTNGTVLDCGDGVCHCVSIYEGYSITN-TITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSF  227 (380)
T ss_pred             HhcCCceEEEEeCCCCceEEEEEECCEEeec-ceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecC
Confidence            9999999999999999999999999999998 8999999999999999999998876554   25789999999999999


Q ss_pred             chHHhhhcc----ccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEE
Q 015305          314 DYKAELSKD----TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVIL  389 (409)
Q Consensus       314 d~~~e~~~~----~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvL  389 (409)
                      |+.+++++.    ....|+||||+.+.++.|||.+||+||+|+++|.+..||+++|.++|.+|++ |+  |++|++||||
T Consensus       228 d~~~e~~~~~~~~~~~~y~LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~-d~--r~~L~~nIvL  304 (380)
T PTZ00466        228 NMNKEKNSSEKALTTLPYILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADM-DL--RRTLYSHIVL  304 (380)
T ss_pred             ChHHHHhhccccccceeEECCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCCh-hh--HHHHhhcEEE
Confidence            988765421    2367999999999999999999999999999999999999999999999998 98  8999999999


Q ss_pred             eccCCCCccHHHHHhhhhcC
Q 015305          390 TGGSACLPGLAGIRNSFNKQ  409 (409)
Q Consensus       390 tGG~S~ipGf~eRL~~E~k~  409 (409)
                      +||+|++|||.+||++|+++
T Consensus       305 ~GG~Sl~~Gf~~RL~~EL~~  324 (380)
T PTZ00466        305 SGGTTMFHGFGDRLLNEIRK  324 (380)
T ss_pred             eCCccccCCHHHHHHHHHHH
Confidence            99999999999999999974

>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>PRK13321 pantothenate kinase; Reviewed Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway Back     alignment and domain information
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13324 pantothenate kinase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 2e-24
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 3e-24
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 3e-24
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 6e-24
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 2e-23
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 2e-23
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 2e-23
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 3e-23
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 3e-23
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 3e-23
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 3e-23
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 3e-23
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 6e-23
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 8e-23
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 9e-23
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 9e-23
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 1e-22
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 1e-22
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 2e-22
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 2e-22
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 3e-22
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 3e-22
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 3e-22
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 3e-22
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 3e-22
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 3e-22
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 3e-22
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 3e-22
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 3e-22
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 3e-22
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 3e-22
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 3e-22
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 3e-22
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 3e-22
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 3e-22
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 3e-22
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 3e-22
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 3e-22
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 3e-22
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 4e-13
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 4e-13
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 7e-08
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 6e-06
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 146/318 (45%), Gaps = 58/318 (18%)
Query: 127 SVIIDGGSGYCKFGWSKYDCPS-------GR---TATFLEFGNIES-------------P 163
           +++ID GSG CK G++  D P        GR   T   +  G  +S              
Sbjct: 7   ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 164 MYSRLRH------------FFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLK 211
           +   + H            +  T Y+ ++V P   P++++      +   N KA+R ++ 
Sbjct: 67  LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT------EAPLNPKANREKMT 120
Query: 212 DCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGV 270
               Q++F+  N PA+    QA L+LYA+ RT+GIV++ G  VT  VPI  G  +    +
Sbjct: 121 ----QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH-AI 175
Query: 271 EVMGLGALKLTGYLRLLMQQNNINFGSL---YTVRTLKEKLCYVAADYKAEL-----SKD 322
             + L    LT YL  ++ +   +F +      VR +KEKLCYVA D++ E+     S  
Sbjct: 176 LRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAASSSA 235
Query: 323 TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDA 382
            + S E+      T+  ERF+  E LFQP    + + G+ +     +  C   ++  D  
Sbjct: 236 LEKSYELPDGQVITIGNERFRAPEALFQPSFLGMESAGIHETTYNSIMKCD-VDIRKD-- 292
Query: 383 WFKTVILTGGSACLPGLA 400
            +  V+L+GG+   PG+A
Sbjct: 293 LYGNVVLSGGTTMFPGIA 310
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 3e-41
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 7e-37
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-36
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 5e-33
3qb0_A 498 Actin-related protein 4; actin fold, ATP binding, 2e-27
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 3e-06
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 9e-06
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 1e-04
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 2e-04
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
 Score =  148 bits (376), Expect = 3e-41
 Identities = 83/317 (26%), Positives = 141/317 (44%), Gaps = 58/317 (18%)

Query: 128 VIIDGGSGYCKFGWSKYDCPS-------GR---TATFLEFG-----------------NI 160
           ++ D GSG  K G++  D P        GR       +  G                  +
Sbjct: 8   LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 67

Query: 161 ESPMYSRLRHFFA--------TIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKD 212
           + P+   +   +         T Y+ ++V P   P +++          N KA+R ++  
Sbjct: 68  KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPL------NPKANREKM-- 119

Query: 213 CFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVE 271
              Q++F+  NVPA+    QA L+LYA+ RT+GIV++ G  VT  VPI  G  +    + 
Sbjct: 120 --TQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPH-AIM 176

Query: 272 VMGLGALKLTGYLRLLMQQNNINF---GSLYTVRTLKEKLCYVAADYKAELSK-DTQASL 327
            + L    LT YL  ++ +   +F        VR +KEKLCYVA D++ E++   + +SL
Sbjct: 177 RLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSL 236

Query: 328 EIAGEGW----FTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAW 383
           E + E       T+  ERF+  E LFQP    + + G+ +     +  C   ++      
Sbjct: 237 EKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKC---DIDIRKDL 293

Query: 384 FKTVILTGGSACLPGLA 400
           +   +++GG+   PG+A
Sbjct: 294 YANNVMSGGTTMYPGIA 310
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query409
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A 655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.93
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.72
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.71
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.68
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 99.65
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.63
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.57
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.39
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 99.39
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.39
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 99.31
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.28
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.19
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 99.12
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 99.11
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 98.94
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 98.81
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 98.58
3js6_A355 Uncharacterized PARM protein; partition, segregati 98.49
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.4
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.34
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.32
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 98.31
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 98.28
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 98.24
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.77
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.48
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 96.11
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 95.99
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 95.78
3hi0_A 508 Putative exopolyphosphatase; 17739545, structural 95.56
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 95.51
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 94.84
3cer_A343 Possible exopolyphosphatase-like protein; NESG, BL 94.71
1u6z_A 513 Exopolyphosphatase; alpha/beta protein, askha (ace 94.7
3aap_A353 Ectonucleoside triphosphate diphosphohydrolase I; 94.34
3zx3_A 452 Ectonucleoside triphosphate diphosphohydrolase 1; 85.07
3cj1_A456 Ectonucleoside triphosphate diphosphohydrolase 2; 84.53
2h3g_X268 Biosynthetic protein; pantothenate kinase, anthrax 83.64
3djc_A266 Type III pantothenate kinase; structural genomics, 82.38
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.5e-59  Score=485.63  Aligned_cols=277  Identities=21%  Similarity=0.362  Sum_probs=241.9

Q ss_pred             cccCCCCCCCceEEEeCCCCeEEEEEeCCCCCCcccccccc-----------cCC-----------ccchH-------HH
Q 015305          116 HIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------FGN-----------IESPM-------YS  166 (409)
Q Consensus       116 ~~y~~~~~~~~~VVID~GS~~iKaGfage~~P~~~~~t~~~-----------~G~-----------~~~Pi-------~~  166 (409)
                      .+|+++++  .+||||+||++|||||||++.|+.++|++++           +|+           +.+|+       |+
T Consensus        16 ~~yggde~--~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dwd   93 (498)
T 3qb0_A           16 QVYGGDEV--SAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWD   93 (498)
T ss_dssp             ---CCCCB--SCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCSSCCEECCTTGGGSCCTTEEEEESEETTEESCHH
T ss_pred             cccCCCCC--CeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCCCccEEEecHHHhcCcCceEEeccCcCCEEccHH
Confidence            57999998  8899999999999999999999999988653           453           24676       89


Q ss_pred             HHHHHHHHHHh-hcccCCCCC-CeEEEecCCCCCCCcchHHhHHHHHHHHHHHHhh-cCCCeeeeeccchHHHHHcCCcc
Q 015305          167 RLRHFFATIYS-RMQVKPSTQ-PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTS  243 (409)
Q Consensus       167 ~le~~~~~~~~-~L~v~p~~~-pVll~ep~~~~~~~~~~~~~R~~~~E~l~e~lFE-~~vpav~~~~~~vlal~a~G~~s  243 (409)
                      .++++|+++|. .|+++|.++ ||||+||++++      +..|++    +.|++|| ||+|+++++++++||+||+|+++
T Consensus        94 ~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~------~~~Re~----~~eilFE~f~vpav~l~~~~vlalya~G~~t  163 (498)
T 3qb0_A           94 TAQEQWQWALQNELYLNSNSGIPALLTEPVWNS------TENRKK----SLEVLLEGMQFEACYLAPTSTCVSFAAGRPN  163 (498)
T ss_dssp             HHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCC------HHHHHH----HHHHHHTTSCCSEEEEEEHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHhhhCCCcccCCceEEEeCCCCc------HHHHHH----HHHHHHhhcCCCeEeecchHHHHHHHcCCCe
Confidence            99999999885 599999999 99999999864      666654    6778888 99999999999999999999999


Q ss_pred             eEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcC------------------CCCC---------
Q 015305          244 GIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN------------------INFG---------  296 (409)
Q Consensus       244 glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~------------------~~~~---------  296 (409)
                      |+|||+|++.|+|+||++|+++.+ ++.++++||+++|++|.++|+.++                  +.+.         
T Consensus       164 glVVDiG~g~T~vvPI~~G~~l~~-ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~  242 (498)
T 3qb0_A          164 CLVVDIGHDTCSVSPIVDGMTLSK-STRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYA  242 (498)
T ss_dssp             EEEEEECSSCEEEEEEETTEECGG-GCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHH
T ss_pred             EEEEEcCCCcEEEEEEeCCEEccc-cceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHH
Confidence            999999999999999999999998 899999999999999999998652                  2221         


Q ss_pred             -cHHHHHHHHHhhcccccc--hHHhh---hccccceEEeCCCcEEEecce-eeccccccccCCcCCc-------------
Q 015305          297 -SLYTVRTLKEKLCYVAAD--YKAEL---SKDTQASLEIAGEGWFTLSKE-RFQTGEILFQPRMADV-------------  356 (409)
Q Consensus       297 -~~~~ve~iKe~~c~v~~d--~~~e~---~~~~~~~y~Lpdg~~i~l~~e-rf~~~E~LF~P~~~g~-------------  356 (409)
                       ..+++++|||++|||+.|  ++++.   .....+.|+||||+.|.+++| ||.+||.||+|+++|.             
T Consensus       243 ~~~~iv~~iKE~~c~Va~~~~~~~~~~~~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~  322 (498)
T 3qb0_A          243 NNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVK  322 (498)
T ss_dssp             HHHTHHHHHHHHTCCCCSSCHHHHHHHHHHTCCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCC
T ss_pred             HHHHHHHHHHHhhEEecCCccHhHHhhhccCcCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCccccccccccccc
Confidence             123799999999999987  55542   233567899999999999999 9999999999987654             


Q ss_pred             -------------------------------------------------------------------cCCchHHHHHHHH
Q 015305          357 -------------------------------------------------------------------RTMGLDQAVALCM  369 (409)
Q Consensus       357 -------------------------------------------------------------------~~~gL~~~I~~sI  369 (409)
                                                                                         +..||+++|.+||
T Consensus       323 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI  402 (498)
T 3qb0_A          323 TWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSI  402 (498)
T ss_dssp             CCSCCCCCCCBCC-----------------------------------------------------CCSCCHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHH
Confidence                                                                               5679999999999


Q ss_pred             hcCCCCCccchHhhcCCcEEeccCCCCccHHHHHhhhhc
Q 015305          370 DHCHYAELSGDDAWFKTVILTGGSACLPGLAGIRNSFNK  408 (409)
Q Consensus       370 ~~~~~~dl~~r~~L~~NIvLtGG~S~ipGf~eRL~~E~k  408 (409)
                      ++|++ |+  |++|++||||+||+|++|||.+||++||+
T Consensus       403 ~~cd~-d~--r~~L~~nIvLsGGst~~pGf~~Rl~~El~  438 (498)
T 3qb0_A          403 MSSDV-DL--RATLAHNVVLTGGTSSIPGLSDRLMTELN  438 (498)
T ss_dssp             HTSCT-TT--HHHHHTTEEEESGGGGSTTHHHHHHHHHH
T ss_pred             HhCCH-HH--HHHHhcCEEEeCCccCchhHHHHHHHHHH
Confidence            99999 98  89999999999999999999999999986
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A* Back     alignment and structure
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A* Back     alignment and structure
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A* Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 409
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 2e-26
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 3e-25
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 2e-17
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 9e-11
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 5e-08
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 7e-08
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 7e-06
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 1e-05
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 2e-05
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  103 bits (258), Expect = 2e-26
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 241 RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINF---GS 297
           RT+GIV++ G  VT  VPI  G  +    +  + L    LT YL  ++ +   +F     
Sbjct: 1   RTTGIVLDSGDGVTHNVPIYEGYALPH-AIMRLDLAGRDLTDYLMKILTERGYSFVTTAE 59

Query: 298 LYTVRTLKEKLCYVAADYKAEL-----SKDTQASLEIAGEGWFTLSKERFQTGEILFQPR 352
              VR +KEKLCYVA D++ E+     S   + S E+      T+  ERF+  E LFQP 
Sbjct: 60  REIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPS 119

Query: 353 MADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLA 400
              + + G+ +     +  C   ++      +   +++GG+   PG+A
Sbjct: 120 FIGMESAGIHETTYNSIMKC---DIDIRKDLYANNVMSGGTTMYPGIA 164
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query409
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.9
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.88
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.35
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.15
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 99.12
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.95
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.87
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 98.85
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 98.29
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 97.94
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 97.73
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 97.27
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 95.47
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 93.27
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 92.97
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 89.97
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 89.88
d1q18a1110 Glucokinase Glk {Escherichia coli [TaxId: 562]} 83.65
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-37  Score=281.75  Aligned_cols=162  Identities=28%  Similarity=0.460  Sum_probs=150.5

Q ss_pred             eEEEEeCCceeEEEEEecCeEeecccEEEEccchhHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhhcccccchHHhhh
Q 015305          244 GIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELS  320 (409)
Q Consensus       244 glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~ve~iKe~~c~v~~d~~~e~~  320 (409)
                      |||||+|++.|+|+||+||+++++ ++.++++||++++++|+++|.+++..+.   ..+.++++|++.||++.++.++..
T Consensus         1 GlVVDiG~~~T~v~PV~dG~~l~~-a~~~~~igG~~lt~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~e~~   79 (190)
T d1k8kb1           1 GVVVDSGDGVTHICPVYEGFSLPH-LTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQK   79 (190)
T ss_dssp             CCEEEECSSCEEEECEETTEECST-TCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHH
T ss_pred             CEEEEcCCCcEEEEEeECCEEccc-ceEEEeccHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhhhhhhcccHHHHHH
Confidence            799999999999999999999998 9999999999999999999999887654   367999999999999999877653


Q ss_pred             c-----cccceEEeCCCcEEEecceeeccccccccCCcCCccCCchHHHHHHHHhcCCCCCccchHhhcCCcEEeccCCC
Q 015305          321 K-----DTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC  395 (409)
Q Consensus       321 ~-----~~~~~y~Lpdg~~i~l~~erf~~~E~LF~P~~~g~~~~gL~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~  395 (409)
                      .     .....|++|||+.+.+++|||.+||+||+|+..+.+..||+++|.++|.+||+ |+  |+.|++|||||||+|+
T Consensus        80 ~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~-d~--r~~L~~NIvl~GG~Sl  156 (190)
T d1k8kb1          80 LALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADI-DT--RSEFYKHIVLSGGSTM  156 (190)
T ss_dssp             HHHHCSTTCEEEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCT-TT--HHHHHTTCEEESGGGC
T ss_pred             hhhcccceeeeeecCCCcEEEEChhhccccccccChhhcCcccccHHHHHHHHHHhCCH-hH--HHHHHcCEEEECcccC
Confidence            2     24578999999999999999999999999999999999999999999999999 98  8999999999999999


Q ss_pred             CccHHHHHhhhhcC
Q 015305          396 LPGLAGIRNSFNKQ  409 (409)
Q Consensus       396 ipGf~eRL~~E~k~  409 (409)
                      +|||.+||++|+++
T Consensus       157 ~pGf~~RL~~EL~~  170 (190)
T d1k8kb1         157 YPGLPSRLERELKQ  170 (190)
T ss_dssp             STTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999999864
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure