Citrus Sinensis ID: 015306
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 409 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SU94 | 390 | Protein arginine N-methyl | yes | no | 0.904 | 0.948 | 0.785 | 1e-176 | |
| Q0J2C6 | 387 | Probable protein arginine | yes | no | 0.797 | 0.842 | 0.851 | 1e-172 | |
| A2Z0C0 | 387 | Probable protein arginine | N/A | no | 0.797 | 0.842 | 0.851 | 1e-172 | |
| O82210 | 366 | Probable protein arginine | no | no | 0.823 | 0.920 | 0.813 | 1e-166 | |
| Q9JIF0 | 371 | Protein arginine N-methyl | yes | no | 0.882 | 0.973 | 0.555 | 1e-117 | |
| Q99873 | 361 | Protein arginine N-methyl | yes | no | 0.872 | 0.988 | 0.558 | 1e-117 | |
| Q28F07 | 351 | Protein arginine N-methyl | yes | no | 0.836 | 0.974 | 0.569 | 1e-117 | |
| Q5RGQ2 | 419 | Protein arginine N-methyl | yes | no | 0.799 | 0.780 | 0.595 | 1e-116 | |
| Q8AV13 | 369 | Protein arginine N-methyl | N/A | no | 0.845 | 0.937 | 0.574 | 1e-116 | |
| Q63009 | 353 | Protein arginine N-methyl | yes | no | 0.863 | 1.0 | 0.563 | 1e-116 |
| >sp|Q9SU94|ANM11_ARATH Protein arginine N-methyltransferase 1.1 OS=Arabidopsis thaliana GN=PRMT11 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 619 bits (1596), Expect = e-176, Method: Compositional matrix adjust.
Identities = 301/383 (78%), Positives = 333/383 (86%), Gaps = 13/383 (3%)
Query: 29 HNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDGE--DDKTSADY 86
NT RF DA+ED+ S VA +DE+M DA S E DD TSADY
Sbjct: 19 QNTKIRFEDADEDEVAEGS----GVAGE---ETPQDESMFDAGESADTAEVTDDTTSADY 71
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
YFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFL KDK+VLDVGAGTGILSLFCAKAGAA
Sbjct: 72 YFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLIKDKIVLDVGAGTGILSLFCAKAGAA 131
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
HVYAVECSQMA+MAK+IV+ANGFS+VITVLKGKIEEIELP KVD+IISEWMGYFLLFEN
Sbjct: 132 HVYAVECSQMADMAKEIVKANGFSDVITVLKGKIEEIELPTPKVDVIISEWMGYFLLFEN 191
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAM 266
ML++VLYARDKWLV+ G+VLPDKASL+LTAIED+EYK+DKIEFWN+VYGFDMSCIKK+AM
Sbjct: 192 MLDSVLYARDKWLVEGGVVLPDKASLHLTAIEDSEYKEDKIEFWNSVYGFDMSCIKKKAM 251
Query: 267 MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTF 326
MEPLVDTVDQNQIVT+ +LLKTMDISKM GDASFTAPFKLVAQRNDYIHALVAYFDV+F
Sbjct: 252 MEPLVDTVDQNQIVTDSRLLKTMDISKMSSGDASFTAPFKLVAQRNDYIHALVAYFDVSF 311
Query: 327 TKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVD 386
T CHKL+GFS TGPKSRATHWKQTVLYLEDVLTICEGE I+G+++V+PNKKNPRD+D
Sbjct: 312 TMCHKLLGFS----TGPKSRATHWKQTVLYLEDVLTICEGETITGTMSVSPNKKNPRDID 367
Query: 387 IMLKYSLQGRHSAISRIQYYKMR 409
I L YSL G+H ISR Q+YKMR
Sbjct: 368 IKLSYSLNGQHCKISRTQHYKMR 390
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Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain. Type I arginine methyltransferase active on both histones and non-histone proteins. Required for leaves and flowers development. Mediates the methylation of MBD7. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 5 |
| >sp|Q0J2C6|ANM1_ORYSJ Probable protein arginine N-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=PRMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 605 bits (1559), Expect = e-172, Method: Compositional matrix adjust.
Identities = 281/330 (85%), Positives = 305/330 (92%), Gaps = 4/330 (1%)
Query: 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLF 139
DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVI QN FLFKDK+VLDVGAGTGILSLF
Sbjct: 62 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVITQNSFLFKDKIVLDVGAGTGILSLF 121
Query: 140 CAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199
CAKAGA HVYA+ECSQMA+MAK+IV+ NG+SNVITV+KGK+EEIELPV KVD+IISEWMG
Sbjct: 122 CAKAGAKHVYAIECSQMADMAKEIVKTNGYSNVITVIKGKVEEIELPVPKVDVIISEWMG 181
Query: 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 259
YFLLFENMLNTVLYARDKWL D G+VLPDKASL+LTAIEDAEYK+DKIEFWNNVYGFDM
Sbjct: 182 YFLLFENMLNTVLYARDKWLADGGVVLPDKASLHLTAIEDAEYKEDKIEFWNNVYGFDMR 241
Query: 260 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALV 319
CIKKQAMMEPLVDTVD NQIVTNCQLLKTMDISKM PGDASFT PFKLVA+RNDYIHALV
Sbjct: 242 CIKKQAMMEPLVDTVDANQIVTNCQLLKTMDISKMTPGDASFTVPFKLVAERNDYIHALV 301
Query: 320 AYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNK 379
AYF+V+FTKCHK+MGFS TGP+S+ATHWKQTVLYLEDVLTICEGE I+GS+TV PNK
Sbjct: 302 AYFNVSFTKCHKMMGFS----TGPRSKATHWKQTVLYLEDVLTICEGETITGSMTVTPNK 357
Query: 380 KNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
KNPRD+DI L Y+L G +SR Q+YKMR
Sbjct: 358 KNPRDIDIKLCYALSGHRCQVSRTQHYKMR 387
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A2Z0C0|ANM1_ORYSI Probable protein arginine N-methyltransferase 1 OS=Oryza sativa subsp. indica GN=PRMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 605 bits (1559), Expect = e-172, Method: Compositional matrix adjust.
Identities = 281/330 (85%), Positives = 305/330 (92%), Gaps = 4/330 (1%)
Query: 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLF 139
DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVI QN FLFKDK+VLDVGAGTGILSLF
Sbjct: 62 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVITQNSFLFKDKIVLDVGAGTGILSLF 121
Query: 140 CAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199
CAKAGA HVYA+ECSQMA+MAK+IV+ NG+SNVITV+KGK+EEIELPV KVD+IISEWMG
Sbjct: 122 CAKAGAKHVYAIECSQMADMAKEIVKTNGYSNVITVIKGKVEEIELPVPKVDVIISEWMG 181
Query: 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 259
YFLLFENMLNTVLYARDKWL D G+VLPDKASL+LTAIEDAEYK+DKIEFWNNVYGFDM
Sbjct: 182 YFLLFENMLNTVLYARDKWLADGGVVLPDKASLHLTAIEDAEYKEDKIEFWNNVYGFDMR 241
Query: 260 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALV 319
CIKKQAMMEPLVDTVD NQIVTNCQLLKTMDISKM PGDASFT PFKLVA+RNDYIHALV
Sbjct: 242 CIKKQAMMEPLVDTVDANQIVTNCQLLKTMDISKMTPGDASFTVPFKLVAERNDYIHALV 301
Query: 320 AYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNK 379
AYF+V+FTKCHK+MGFS TGP+S+ATHWKQTVLYLEDVLTICEGE I+GS+TV PNK
Sbjct: 302 AYFNVSFTKCHKMMGFS----TGPRSKATHWKQTVLYLEDVLTICEGETITGSMTVTPNK 357
Query: 380 KNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
KNPRD+DI L Y+L G +SR Q+YKMR
Sbjct: 358 KNPRDIDIKLCYALSGHRCQVSRTQHYKMR 387
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Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O82210|ANM12_ARATH Probable protein arginine N-methyltransferase 1.2 OS=Arabidopsis thaliana GN=PRMT12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 585 bits (1508), Expect = e-166, Method: Compositional matrix adjust.
Identities = 283/348 (81%), Positives = 313/348 (89%), Gaps = 11/348 (3%)
Query: 69 DADVSMIDGEDDK-------TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLF 121
DAD SM DG+D+ TSADYYFDSYSHFGIHEEMLKDVVRTKSYQ+VIY+NKFL
Sbjct: 23 DADESMHDGDDNNADVADDITSADYYFDSYSHFGIHEEMLKDVVRTKSYQDVIYKNKFLI 82
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE 181
KDK+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+ AK+IV++NGFS+VITVLKGKIE
Sbjct: 83 KDKIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADTAKEIVKSNGFSDVITVLKGKIE 142
Query: 182 EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241
EIELPV KVD+IISEWMGYFLL+ENML+TVLYAR+KWLVD GIVLPDKASLY+TAIEDA
Sbjct: 143 EIELPVPKVDVIISEWMGYFLLYENMLDTVLYARNKWLVDGGIVLPDKASLYVTAIEDAH 202
Query: 242 YKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASF 301
YKDDK+EFW++VYGFDMSCIK++A+ EPLVDTVD NQIVT+ +LLKTMDISKM GDASF
Sbjct: 203 YKDDKVEFWDDVYGFDMSCIKRRAITEPLVDTVDGNQIVTDSKLLKTMDISKMAAGDASF 262
Query: 302 TAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVL 361
TAPFKLVAQRND+IHALVAYFDV+FT CHK MGFS TGPKSRATHWKQTVLYLEDVL
Sbjct: 263 TAPFKLVAQRNDHIHALVAYFDVSFTMCHKKMGFS----TGPKSRATHWKQTVLYLEDVL 318
Query: 362 TICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
TICEGE I+GS+T+A NKKNPRDVDI L YSL G+H ISR +YKMR
Sbjct: 319 TICEGETITGSMTIAQNKKNPRDVDIKLSYSLNGQHCNISRTHFYKMR 366
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Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9JIF0|ANM1_MOUSE Protein arginine N-methyltransferase 1 OS=Mus musculus GN=Prmt1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/369 (55%), Positives = 270/369 (73%), Gaps = 8/369 (2%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 126
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 127 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLA 186
Query: 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIV 280
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V
Sbjct: 187 PDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLV 246
Query: 281 TNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYN 340
TN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFS
Sbjct: 247 TNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFS---- 302
Query: 341 TGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAI 400
T P+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +
Sbjct: 303 TSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCEL 362
Query: 401 SRIQYYKMR 409
S Y+MR
Sbjct: 363 SCSTDYRMR 371
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q99873|ANM1_HUMAN Protein arginine N-methyltransferase 1 OS=Homo sapiens GN=PRMT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/365 (55%), Positives = 267/365 (73%), Gaps = 8/365 (2%)
Query: 49 LDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDV 104
+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEMLKD
Sbjct: 1 MENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDE 60
Query: 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164
VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV
Sbjct: 61 VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 120
Query: 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI 224
+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL DG+
Sbjct: 121 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLAPDGL 180
Query: 225 VLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQ 284
+ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN
Sbjct: 181 IFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNAC 240
Query: 285 LLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPK 344
L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFS T P+
Sbjct: 241 LIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFS----TSPE 296
Query: 345 SRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQ 404
S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 297 SPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 356
Query: 405 YYKMR 409
Y+MR
Sbjct: 357 DYRMR 361
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q28F07|ANM1_XENTR Protein arginine N-methyltransferase 1 OS=Xenopus tropicalis GN=prmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 421 bits (1081), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/353 (56%), Positives = 260/353 (73%), Gaps = 11/353 (3%)
Query: 64 DEAMCDADVSMIDGE-------DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQ 116
+ + C+ +VS E +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++
Sbjct: 3 EASTCNMEVSCTQPESSVKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFH 62
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVL 176
N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++
Sbjct: 63 NRHLFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTII 122
Query: 177 KGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTA 236
KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL DG++ PD+A+LY+TA
Sbjct: 123 KGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYVTA 182
Query: 237 IEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGP 296
IED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI +
Sbjct: 183 IEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKV 242
Query: 297 GDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLY 356
D +FT+PF L +RNDYIHALVAYF++ FT+CHK GFS T P+S THWKQTV Y
Sbjct: 243 DDLTFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFS----TSPESPYTHWKQTVFY 298
Query: 357 LEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
+ED LT+ GE I G++++ PN KN RD+D + +G+ +S Y+MR
Sbjct: 299 MEDYLTVKTGEEIFGTISMKPNAKNNRDLDFTVDIDFKGQLCELSCSTDYRMR 351
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice (By similarity). Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q5RGQ2|ANM8B_DANRE Protein arginine N-methyltransferase 8-B OS=Danio rerio GN=prmt8b PE=2 SV=2 | Back alignment and function description |
|---|
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/331 (59%), Positives = 249/331 (75%), Gaps = 4/331 (1%)
Query: 79 DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSL 138
++ TS DYYFDSY+HFGIHEEMLKD VRT +Y+N +Y NK +FKDK+VLDVG+GTGILS+
Sbjct: 93 EEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHIFKDKIVLDVGSGTGILSM 152
Query: 139 FCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198
F AKAGA HVY +ECS ++ +++I+++N +VIT+LKGK+EE ELPV +VDIIISEWM
Sbjct: 153 FAAKAGAKHVYGIECSSISEYSEKIIKSNHLDSVITILKGKVEETELPVDQVDIIISEWM 212
Query: 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDM 258
GY L +E+MLNTV+YARDKWL G + PD+A+LY+ AIED +YKD KI +W NVYGFDM
Sbjct: 213 GYCLFYESMLNTVIYARDKWLKPGGFMFPDRATLYVVAIEDRQYKDFKIHWWENVYGFDM 272
Query: 259 SCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHAL 318
+CI+ AMMEPLVD VD Q+VTN L+K +DI + D SFT+ F L QRNDY+HAL
Sbjct: 273 TCIRNVAMMEPLVDIVDPKQVVTNSCLVKEVDIYTVKTEDLSFTSAFCLQIQRNDYVHAL 332
Query: 319 VAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPN 378
V YF++ FTKCHK GFS T P + +THWKQTV YLED LT+ GE I GS+TV PN
Sbjct: 333 VTYFNIEFTKCHKKTGFS----TAPDAPSTHWKQTVFYLEDYLTVRRGEEILGSITVRPN 388
Query: 379 KKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
+ N RD+D + +G+ + YKMR
Sbjct: 389 ENNERDLDFTFELDFKGQLCDAAISHDYKMR 419
|
Membrane-associated arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Able to mono- and dimethylate ews protein; however its precise role toward ews remains unclear as it still interacts with fully methylated ews. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8AV13|ANM1A_XENLA Protein arginine N-methyltransferase 1-A OS=Xenopus laevis GN=prmt1-a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/350 (57%), Positives = 256/350 (73%), Gaps = 4/350 (1%)
Query: 60 TAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKF 119
T IED + + +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+
Sbjct: 24 TPIEDVNSAPPEGGVKTNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRH 83
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK
Sbjct: 84 LFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGK 143
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239
+EE+ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL DG++ PD+A+LY+TAIED
Sbjct: 144 VEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYITAIED 203
Query: 240 AEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA 299
+YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V+N L+K +DI + D
Sbjct: 204 RQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVSNACLIKEVDIYTVKVDDL 263
Query: 300 SFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLED 359
SFT+PF L +RNDYIHALVAYF++ FT+CHK GFS T P+S THWKQTV Y+ED
Sbjct: 264 SFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFS----TSPESPYTHWKQTVFYMED 319
Query: 360 VLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
LT+ GE I G++ + PN KN RD+D +G+ +S Y+MR
Sbjct: 320 YLTVKTGEEIFGTIGMKPNAKNNRDLDFTFDIDFKGQLCELSCSTDYRMR 369
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q63009|ANM1_RAT Protein arginine N-methyltransferase 1 OS=Rattus norvegicus GN=Prmt1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/357 (56%), Positives = 260/357 (72%), Gaps = 4/357 (1%)
Query: 53 VAAPVDGTAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQN 112
+AA I + + A+ S +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N
Sbjct: 1 MAAAEAANCIMEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRN 60
Query: 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNV 172
++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V
Sbjct: 61 SMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHV 120
Query: 173 ITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232
+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL DG++ PD+A+L
Sbjct: 121 VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATL 180
Query: 233 YLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDIS 292
Y+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI
Sbjct: 181 YVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIY 240
Query: 293 KMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQ 352
+ D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFS T P+S THWKQ
Sbjct: 241 TVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFS----TSPESPYTHWKQ 296
Query: 353 TVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
TV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S Y+MR
Sbjct: 297 TVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 353
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 409 | ||||||
| 255546199 | 387 | protein arginine n-methyltransferase 1, | 0.943 | 0.997 | 0.787 | 0.0 | |
| 118487693 | 384 | unknown [Populus trichocarpa] | 0.929 | 0.989 | 0.817 | 0.0 | |
| 224122474 | 377 | arginine methyltransferease [Populus tri | 0.907 | 0.984 | 0.822 | 0.0 | |
| 363806956 | 376 | uncharacterized protein LOC100795951 [Gl | 0.919 | 1.0 | 0.767 | 0.0 | |
| 356520854 | 379 | PREDICTED: probable protein arginine N-m | 0.926 | 1.0 | 0.772 | 1e-180 | |
| 255647533 | 379 | unknown [Glycine max] | 0.926 | 1.0 | 0.772 | 1e-180 | |
| 225444983 | 406 | PREDICTED: protein arginine N-methyltran | 0.921 | 0.928 | 0.777 | 1e-177 | |
| 15233606 | 390 | protein arginine N-methyltransferase 1 [ | 0.904 | 0.948 | 0.785 | 1e-175 | |
| 17381028 | 390 | putative arginine methyltransferase pam1 | 0.904 | 0.948 | 0.783 | 1e-174 | |
| 190683457 | 385 | putative protein arginine N-methyltransf | 0.941 | 1.0 | 0.733 | 1e-173 |
| >gi|255546199|ref|XP_002514159.1| protein arginine n-methyltransferase 1, putative [Ricinus communis] gi|223546615|gb|EEF48113.1| protein arginine n-methyltransferase 1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/410 (78%), Positives = 358/410 (87%), Gaps = 24/410 (5%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVD-G 59
M R KNN++S + STK+ RF DA+ED T SS L +S D G
Sbjct: 1 MSRSKNNEASMSQ--STKI--------------RFEDADEDLTTESSYLGESTVVGDDKG 44
Query: 60 TAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKF 119
AI+DE+M +ADVS ID DKTSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKF
Sbjct: 45 IAIDDESMGEADVSCID---DKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKF 101
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
LFK+KVVLDVGAGTGILSLFCAKAGAAHVYAVECS MA+MAK+IVE+NGFSNV+TVLKGK
Sbjct: 102 LFKNKVVLDVGAGTGILSLFCAKAGAAHVYAVECSAMADMAKEIVESNGFSNVVTVLKGK 161
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239
+EE+ELPV KVDIIISEWMGYFLL+ENMLNTVLYARDKWLV+DGI+LPDKASL+LTAIED
Sbjct: 162 VEELELPVAKVDIIISEWMGYFLLYENMLNTVLYARDKWLVNDGILLPDKASLFLTAIED 221
Query: 240 AEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA 299
AEYK+DKIEFWN VYGFDMSCIKKQAMMEPLVDTVDQNQ+VTNCQLLKTMDISKM GDA
Sbjct: 222 AEYKEDKIEFWNRVYGFDMSCIKKQAMMEPLVDTVDQNQVVTNCQLLKTMDISKMASGDA 281
Query: 300 SFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLED 359
SFT PFKLVA+R+DYIHALVAYFDV+FT+CHKLMGFS TGP+SRATHWKQTVLYLED
Sbjct: 282 SFTVPFKLVAERDDYIHALVAYFDVSFTRCHKLMGFS----TGPRSRATHWKQTVLYLED 337
Query: 360 VLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
VLTICEGEAI+GS+TVAPNKKNPRD+DIM+KY+L GR A++R QYYKMR
Sbjct: 338 VLTICEGEAITGSMTVAPNKKNPRDIDIMVKYALNGRRCAVTRTQYYKMR 387
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118487693|gb|ABK95671.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/388 (81%), Positives = 341/388 (87%), Gaps = 8/388 (2%)
Query: 23 NPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDG-EDDK 81
N R Q I RF D EE SS LDDS+ A AI+D AM D DVS +DG +DDK
Sbjct: 4 NNTRHQATKI-RFNDEEE--EEESSNLDDSIVATEKSIAIDDVAMQDPDVSFVDGCDDDK 60
Query: 82 TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA 141
TSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA
Sbjct: 61 TSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA 120
Query: 142 KAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201
KAGAAHVYAVECS MANMAK+IVE+NG+SNVITVLKGKIEEIELPV KVDIIISEWMGYF
Sbjct: 121 KAGAAHVYAVECSHMANMAKEIVESNGYSNVITVLKGKIEEIELPVAKVDIIISEWMGYF 180
Query: 202 LLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCI 261
LLFENMLN+VLY RDKWLV+DGIVLPD+ SLYLTAIEDAEYK+DKIEFWNNVYGFDM+CI
Sbjct: 181 LLFENMLNSVLYTRDKWLVNDGIVLPDQTSLYLTAIEDAEYKEDKIEFWNNVYGFDMTCI 240
Query: 262 KKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAY 321
KKQAM EPLVDTVDQNQIVTNCQ LKTMDISKM GD SFTAPFKLVA+R+D+IHALVAY
Sbjct: 241 KKQAMGEPLVDTVDQNQIVTNCQKLKTMDISKMVSGDTSFTAPFKLVAERDDFIHALVAY 300
Query: 322 FDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKN 381
FDV+FTKCHK GFS TGP+SRATHWKQTVLYLEDVLTIC+GEA+SGS+TVAPNKKN
Sbjct: 301 FDVSFTKCHKFTGFS----TGPRSRATHWKQTVLYLEDVLTICQGEALSGSMTVAPNKKN 356
Query: 382 PRDVDIMLKYSLQGRHSAISRIQYYKMR 409
PRD+DIM+KYSL GR SR Q+YKMR
Sbjct: 357 PRDIDIMIKYSLNGRRCVASRTQHYKMR 384
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122474|ref|XP_002330490.1| arginine methyltransferease [Populus trichocarpa] gi|222872424|gb|EEF09555.1| arginine methyltransferease [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/378 (82%), Positives = 338/378 (89%), Gaps = 7/378 (1%)
Query: 33 TRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDG-EDDKTSADYYFDSY 91
TR +E++ SS LDDS+ A AI+D AM D DVS +DG +DDKTSADYYFDSY
Sbjct: 6 TRHQATKEEEE--SSNLDDSIVATEKSIAIDDVAMQDPDVSFVDGCDDDKTSADYYFDSY 63
Query: 92 SHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAV 151
SHFGIHEEMLKDVVRTK+YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAV
Sbjct: 64 SHFGIHEEMLKDVVRTKTYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAV 123
Query: 152 ECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTV 211
ECS MANMAK+IVE+NG+SNVITVLKGKIEEIELPV KVDIIISEWMGYFLLFENMLN+V
Sbjct: 124 ECSHMANMAKEIVESNGYSNVITVLKGKIEEIELPVAKVDIIISEWMGYFLLFENMLNSV 183
Query: 212 LYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLV 271
LY RDKWLV+DGIVLPD+ SLYLTAIEDAEYK+DKIEFWNNVYGFDM+CIKKQAM EPLV
Sbjct: 184 LYTRDKWLVNDGIVLPDQTSLYLTAIEDAEYKEDKIEFWNNVYGFDMTCIKKQAMGEPLV 243
Query: 272 DTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHK 331
DTVDQNQIVTNCQ LKTMDISKM GD SFTAPFKLVA+R+D+IHALVAYFDV+FTKCHK
Sbjct: 244 DTVDQNQIVTNCQKLKTMDISKMVSGDTSFTAPFKLVAERDDFIHALVAYFDVSFTKCHK 303
Query: 332 LMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKY 391
GFS TGP+SRATHWKQTVLYLEDVLTIC+GEA+SGS+TVAPNKKNPRD+DIM+KY
Sbjct: 304 FTGFS----TGPRSRATHWKQTVLYLEDVLTICQGEALSGSMTVAPNKKNPRDIDIMIKY 359
Query: 392 SLQGRHSAISRIQYYKMR 409
SL GR SR Q+YKMR
Sbjct: 360 SLNGRRCVASRTQHYKMR 377
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363806956|ref|NP_001242055.1| uncharacterized protein LOC100795951 [Glycine max] gi|255639209|gb|ACU19903.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/409 (76%), Positives = 343/409 (83%), Gaps = 33/409 (8%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGT 60
MG+RKN DNN + S S D +N RF +A VD +
Sbjct: 1 MGQRKN----DNN--INQCSSSKEDADMNNNHLRFEEA------------------VDES 36
Query: 61 AIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+ D++MCD I+ DDKTSADYYFDSYSHFGIHEEMLKD VRTK+YQNVIYQN+FL
Sbjct: 37 SNLDQSMCD-----IEESDDKTSADYYFDSYSHFGIHEEMLKDTVRTKTYQNVIYQNRFL 91
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
FK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+MAK+IVEANG+SNV+TVLKGKI
Sbjct: 92 FKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSNVVTVLKGKI 151
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWLVD G+VLPDKASL+LTAIED
Sbjct: 152 EEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDGGVVLPDKASLHLTAIEDT 211
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
+YK+DKIEFWNNVYGFDMSCIKKQA+MEPLVDTVDQNQI TNCQLLKTMDISKM PGDAS
Sbjct: 212 DYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDAS 271
Query: 301 FTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDV 360
FT PFKLVA+R+DYIHALVAYFDV+FTKCHKLMGFS TGP+SRATHWKQTVLYLEDV
Sbjct: 272 FTVPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFS----TGPRSRATHWKQTVLYLEDV 327
Query: 361 LTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
LTICEGEAI GS+ VAPNKKNPRDVDIMLKYSL GR +SR+QYYKMR
Sbjct: 328 LTICEGEAIVGSMAVAPNKKNPRDVDIMLKYSLNGRRCNVSRVQYYKMR 376
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520854|ref|XP_003529075.1| PREDICTED: probable protein arginine N-methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 316/409 (77%), Positives = 349/409 (85%), Gaps = 30/409 (7%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGT 60
MGRRKNN +++ SS + +D N + RF +A+E VD +
Sbjct: 1 MGRRKNNSNNNQCSSSKEDADMNSNH------LRFEEADE---------------AVDES 39
Query: 61 AIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+ D++MCD I+ DDKTSADYYFDSYSHFGIHEEMLKD VRTK+YQNVIYQNKFL
Sbjct: 40 SNLDQSMCD-----IEESDDKTSADYYFDSYSHFGIHEEMLKDSVRTKTYQNVIYQNKFL 94
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
FK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+MAK+IVEANG+SNV+TVLKGKI
Sbjct: 95 FKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSNVVTVLKGKI 154
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWLVD G+VLPDKASL+LTAIEDA
Sbjct: 155 EEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDGGVVLPDKASLHLTAIEDA 214
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
+YK+DKIEFWNNVYGFDMSCIKKQA+MEPLVDTVDQNQI TNCQLLKTMDISKM PGDAS
Sbjct: 215 DYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDAS 274
Query: 301 FTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDV 360
F APFKLVA+R+DYIHALVAYFDV+FTKCHKLMGFS TGP+SRATHWKQTVLYLEDV
Sbjct: 275 FAAPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFS----TGPRSRATHWKQTVLYLEDV 330
Query: 361 LTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
LT+CEGEAI GS+TVAPNKKNPRDVDIMLKYSL GR +SR+QYYKMR
Sbjct: 331 LTVCEGEAIVGSMTVAPNKKNPRDVDIMLKYSLNGRRCNVSRVQYYKMR 379
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255647533|gb|ACU24230.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 316/409 (77%), Positives = 348/409 (85%), Gaps = 30/409 (7%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGT 60
MGRRKNN +++ SS + +D N + RF +A+E VD +
Sbjct: 1 MGRRKNNSNNNQCSSSKEDTDMNSNH------LRFEEADE---------------AVDES 39
Query: 61 AIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+ D++MCD I+ DDKTSADYYFDSYSHFGIHEEMLKD VRTK+YQNVIYQNKFL
Sbjct: 40 SNLDQSMCD-----IEESDDKTSADYYFDSYSHFGIHEEMLKDSVRTKTYQNVIYQNKFL 94
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
FK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+MAK+IVEANG+SNV+TVLKGKI
Sbjct: 95 FKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSNVVTVLKGKI 154
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWLVD G+VLPDKASL+LTAIEDA
Sbjct: 155 EEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDGGVVLPDKASLHLTAIEDA 214
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
+YK+DKIEFWNNVYGFDMSCIKKQA+MEPLVDTVDQNQI TNCQLLKTMDISKM PGDAS
Sbjct: 215 DYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDAS 274
Query: 301 FTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDV 360
F APFKLVA+R+DYIHALVAYFDV+FTKCHKLMGFS TGP+SRATHWKQTVLYLEDV
Sbjct: 275 FAAPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFS----TGPRSRATHWKQTVLYLEDV 330
Query: 361 LTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
LT+CEGEAI GS TVAPNKKNPRDVDIMLKYSL GR +SR+QYYKMR
Sbjct: 331 LTVCEGEAIVGSTTVAPNKKNPRDVDIMLKYSLNGRRCNVSRVQYYKMR 379
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444983|ref|XP_002282760.1| PREDICTED: protein arginine N-methyltransferase 1.1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust.
Identities = 308/396 (77%), Positives = 338/396 (85%), Gaps = 19/396 (4%)
Query: 29 HNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEA----MC-----DADVSMIDGED 79
T TRF D + ++AT SS L+D + + T +D+A MC D D++ D
Sbjct: 15 QGTHTRFEDEQIEEATESSNLEDPMCDADESTIGQDKAIDDTMCEPGESDKDIARSFELD 74
Query: 80 D------KTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGT 133
D KTSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIY+NKFLFK+KVVLDVGAGT
Sbjct: 75 DSVIGSDKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYKNKFLFKNKVVLDVGAGT 134
Query: 134 GILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193
GILSLFCAKAGA HVYAVECS MA+MAK+IVE NGFS+VITV+KGK+EEI LPV +VDII
Sbjct: 135 GILSLFCAKAGAKHVYAVECSHMADMAKEIVEVNGFSDVITVMKGKVEEIVLPVAQVDII 194
Query: 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNV 253
ISEWMGYFLLFENMLNTVLYARDKWLV+DGIVLPDKASLYLTAIEDAEYK+DKIEFWN+V
Sbjct: 195 ISEWMGYFLLFENMLNTVLYARDKWLVNDGIVLPDKASLYLTAIEDAEYKEDKIEFWNSV 254
Query: 254 YGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRND 313
YGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKM PGDASFTAPFKLVA R+D
Sbjct: 255 YGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMAPGDASFTAPFKLVASRDD 314
Query: 314 YIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSL 373
YIHALVAYFDV+FTKCHKL GFS TGP+SRATHWKQTVLYLEDVLTICEGE + GS+
Sbjct: 315 YIHALVAYFDVSFTKCHKLTGFS----TGPRSRATHWKQTVLYLEDVLTICEGETVVGSM 370
Query: 374 TVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
TVA NKKNPRDVDIM+KYS G+ +SR QYYKMR
Sbjct: 371 TVAQNKKNPRDVDIMIKYSFNGQRCQVSRTQYYKMR 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233606|ref|NP_194680.1| protein arginine N-methyltransferase 1 [Arabidopsis thaliana] gi|75208030|sp|Q9SU94.1|ANM11_ARATH RecName: Full=Protein arginine N-methyltransferase 1.1; Short=AtPRMT11; AltName: Full=Arginine methyltransferase pam1; AltName: Full=Histone-arginine N-methyltransferase PRMT11 gi|5123545|emb|CAB45311.1| arginine methyltransferase (pam1) [Arabidopsis thaliana] gi|7269850|emb|CAB79709.1| arginine methyltransferase (pam1) [Arabidopsis thaliana] gi|21593404|gb|AAM65371.1| arginine methyltransferase pam1 [Arabidopsis thaliana] gi|23297369|gb|AAN12952.1| arginine methyltransferase pam1 [Arabidopsis thaliana] gi|332660238|gb|AEE85638.1| protein arginine N-methyltransferase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust.
Identities = 301/383 (78%), Positives = 333/383 (86%), Gaps = 13/383 (3%)
Query: 29 HNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDGE--DDKTSADY 86
NT RF DA+ED+ S VA +DE+M DA S E DD TSADY
Sbjct: 19 QNTKIRFEDADEDEVAEGS----GVAGE---ETPQDESMFDAGESADTAEVTDDTTSADY 71
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
YFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFL KDK+VLDVGAGTGILSLFCAKAGAA
Sbjct: 72 YFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLIKDKIVLDVGAGTGILSLFCAKAGAA 131
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
HVYAVECSQMA+MAK+IV+ANGFS+VITVLKGKIEEIELP KVD+IISEWMGYFLLFEN
Sbjct: 132 HVYAVECSQMADMAKEIVKANGFSDVITVLKGKIEEIELPTPKVDVIISEWMGYFLLFEN 191
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAM 266
ML++VLYARDKWLV+ G+VLPDKASL+LTAIED+EYK+DKIEFWN+VYGFDMSCIKK+AM
Sbjct: 192 MLDSVLYARDKWLVEGGVVLPDKASLHLTAIEDSEYKEDKIEFWNSVYGFDMSCIKKKAM 251
Query: 267 MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTF 326
MEPLVDTVDQNQIVT+ +LLKTMDISKM GDASFTAPFKLVAQRNDYIHALVAYFDV+F
Sbjct: 252 MEPLVDTVDQNQIVTDSRLLKTMDISKMSSGDASFTAPFKLVAQRNDYIHALVAYFDVSF 311
Query: 327 TKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVD 386
T CHKL+GFS TGPKSRATHWKQTVLYLEDVLTICEGE I+G+++V+PNKKNPRD+D
Sbjct: 312 TMCHKLLGFS----TGPKSRATHWKQTVLYLEDVLTICEGETITGTMSVSPNKKNPRDID 367
Query: 387 IMLKYSLQGRHSAISRIQYYKMR 409
I L YSL G+H ISR Q+YKMR
Sbjct: 368 IKLSYSLNGQHCKISRTQHYKMR 390
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|17381028|gb|AAL36326.1| putative arginine methyltransferase pam1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 300/383 (78%), Positives = 332/383 (86%), Gaps = 13/383 (3%)
Query: 29 HNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDGE--DDKTSADY 86
NT RF DA+ED+ S VA +DE+M DA S E DD TSADY
Sbjct: 19 QNTKIRFEDADEDEVAEGS----GVAGE---ETPQDESMFDAGESADTAEVTDDTTSADY 71
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
YFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFL KDK+VLDVGAGTGILSLFCAKAGAA
Sbjct: 72 YFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLIKDKIVLDVGAGTGILSLFCAKAGAA 131
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
HVYAVECSQMA+MAK+IV+ANGFS+VITVLKGKIEEIELP KVD+IISEWMGYFLLFEN
Sbjct: 132 HVYAVECSQMADMAKEIVKANGFSDVITVLKGKIEEIELPTPKVDVIISEWMGYFLLFEN 191
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAM 266
ML++VLYARDKWLV+ G+VLPDKASL+LTAIED+EYK+DKIEFWN+VYGFDMSCIKK+AM
Sbjct: 192 MLDSVLYARDKWLVEGGVVLPDKASLHLTAIEDSEYKEDKIEFWNSVYGFDMSCIKKKAM 251
Query: 267 MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTF 326
MEPLVDTV QNQIVT+ +LLKTMDISKM GDASFTAPFKLVAQRNDYIHALVAYFDV+F
Sbjct: 252 MEPLVDTVGQNQIVTDSRLLKTMDISKMSSGDASFTAPFKLVAQRNDYIHALVAYFDVSF 311
Query: 327 TKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVD 386
T CHKL+GFS TGPKSRATHWKQTVLYLEDVLTICEGE I+G+++V+PNKKNPRD+D
Sbjct: 312 TMCHKLLGFS----TGPKSRATHWKQTVLYLEDVLTICEGETITGTMSVSPNKKNPRDID 367
Query: 387 IMLKYSLQGRHSAISRIQYYKMR 409
I L YSL G+H ISR Q+YKMR
Sbjct: 368 IKLSYSLNGQHCKISRTQHYKMR 390
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|190683457|gb|ACE82047.1| putative protein arginine N-methyltransferase 1 [Musa acuminata AAA Group] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 300/409 (73%), Positives = 335/409 (81%), Gaps = 24/409 (5%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGT 60
MGRRK N + S PD N D + A ++ ++ + +
Sbjct: 1 MGRRKGG----NKALAPSGQKSTPDADGMNL-----DGGKGQEEAPEVV--AIEEKAESS 49
Query: 61 AIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+ED + +D KTSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIYQN FL
Sbjct: 50 NLEDSPLIGSD---------KTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNSFL 100
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
FK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+MAK+IV+ NG+SNVITVLKGK+
Sbjct: 101 FKNKVVLDVGAGTGILSLFCAKAGAKHVYAVECSLMADMAKEIVQTNGYSNVITVLKGKV 160
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELPV VD+IISEWMGYFLLFENMLNTVLYARDKWL ++GIVLPDKASLYLTAIEDA
Sbjct: 161 EEIELPVAHVDVIISEWMGYFLLFENMLNTVLYARDKWLNNNGIVLPDKASLYLTAIEDA 220
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
EYK+DKIEFWNNVYGFDMSCI+KQAM+EPLVDTVDQNQIVTNCQLLKTMDISKM PGD S
Sbjct: 221 EYKEDKIEFWNNVYGFDMSCIEKQAMIEPLVDTVDQNQIVTNCQLLKTMDISKMAPGDVS 280
Query: 301 FTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDV 360
F APFKLVA+RNDYIHALVAYFDV+FTKCHKL+GFS TGP+S+ATHWKQTVLYLEDV
Sbjct: 281 FMAPFKLVAERNDYIHALVAYFDVSFTKCHKLVGFS----TGPRSKATHWKQTVLYLEDV 336
Query: 361 LTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
LTICEGEA+ GSLTV PN++NPRDVDIMLKYSL G+H +SR Q+YKMR
Sbjct: 337 LTICEGEAVVGSLTVEPNERNPRDVDIMLKYSLNGQHCQVSRTQHYKMR 385
|
Source: Musa acuminata AAA Group Species: Musa acuminata Genus: Musa Family: Musaceae Order: Zingiberales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 409 | ||||||
| TAIR|locus:2134328 | 390 | PRMT11 "arginine methyltransfe | 0.838 | 0.879 | 0.830 | 1.7e-155 | |
| TAIR|locus:2051995 | 366 | PRMT1A "protein arginine methy | 0.836 | 0.934 | 0.817 | 2.3e-151 | |
| UNIPROTKB|F6XFY9 | 371 | PRMT1 "Uncharacterized protein | 0.882 | 0.973 | 0.558 | 1.1e-108 | |
| UNIPROTKB|H7C2I1 | 371 | PRMT1 "Protein arginine N-meth | 0.882 | 0.973 | 0.558 | 1.1e-108 | |
| MGI|MGI:107846 | 371 | Prmt1 "protein arginine N-meth | 0.882 | 0.973 | 0.555 | 3.9e-108 | |
| UNIPROTKB|Q99873 | 361 | PRMT1 "Protein arginine N-meth | 0.872 | 0.988 | 0.558 | 8.1e-108 | |
| UNIPROTKB|E2R6B6 | 374 | PRMT1 "Uncharacterized protein | 0.882 | 0.965 | 0.553 | 2.7e-107 | |
| UNIPROTKB|Q5E949 | 353 | HRMT1L2 "HMT1 hnRNP methyltran | 0.833 | 0.966 | 0.580 | 5.7e-107 | |
| UNIPROTKB|Q28F07 | 351 | prmt1 "Protein arginine N-meth | 0.833 | 0.971 | 0.578 | 7.2e-107 | |
| UNIPROTKB|Q8AV13 | 369 | prmt1-a "Protein arginine N-me | 0.845 | 0.937 | 0.574 | 7.2e-107 |
| TAIR|locus:2134328 PRMT11 "arginine methyltransferase 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1516 (538.7 bits), Expect = 1.7e-155, P = 1.7e-155
Identities = 290/349 (83%), Positives = 320/349 (91%)
Query: 63 EDEAMCDADVSMIDGE--DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+DE+M DA S E DD TSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFL
Sbjct: 46 QDESMFDAGESADTAEVTDDTTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFL 105
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
KDK+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+MAK+IV+ANGFS+VITVLKGKI
Sbjct: 106 IKDKIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADMAKEIVKANGFSDVITVLKGKI 165
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELP KVD+IISEWMGYFLLFENML++VLYARDKWLV+ G+VLPDKASL+LTAIED+
Sbjct: 166 EEIELPTPKVDVIISEWMGYFLLFENMLDSVLYARDKWLVEGGVVLPDKASLHLTAIEDS 225
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
EYK+DKIEFWN+VYGFDMSCIKK+AMMEPLVDTVDQNQIVT+ +LLKTMDISKM GDAS
Sbjct: 226 EYKEDKIEFWNSVYGFDMSCIKKKAMMEPLVDTVDQNQIVTDSRLLKTMDISKMSSGDAS 285
Query: 301 FTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDV 360
FTAPFKLVAQRNDYIHALVAYFDV+FT CHKL+GFST GPKSRATHWKQTVLYLEDV
Sbjct: 286 FTAPFKLVAQRNDYIHALVAYFDVSFTMCHKLLGFST----GPKSRATHWKQTVLYLEDV 341
Query: 361 LTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
LTICEGE I+G+++V+PNKKNPRD+DI L YSL G+H ISR Q+YKMR
Sbjct: 342 LTICEGETITGTMSVSPNKKNPRDIDIKLSYSLNGQHCKISRTQHYKMR 390
|
|
| TAIR|locus:2051995 PRMT1A "protein arginine methyltransferase 1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1477 (525.0 bits), Expect = 2.3e-151, P = 2.3e-151
Identities = 283/346 (81%), Positives = 313/346 (90%)
Query: 64 DEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKD 123
DE+M D D + D DD TSADYYFDSYSHFGIHEEMLKDVVRTKSYQ+VIY+NKFL KD
Sbjct: 25 DESMHDGDDNNADVADDITSADYYFDSYSHFGIHEEMLKDVVRTKSYQDVIYKNKFLIKD 84
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI 183
K+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+ AK+IV++NGFS+VITVLKGKIEEI
Sbjct: 85 KIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADTAKEIVKSNGFSDVITVLKGKIEEI 144
Query: 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK 243
ELPV KVD+IISEWMGYFLL+ENML+TVLYAR+KWLVD GIVLPDKASLY+TAIEDA YK
Sbjct: 145 ELPVPKVDVIISEWMGYFLLYENMLDTVLYARNKWLVDGGIVLPDKASLYVTAIEDAHYK 204
Query: 244 DDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTA 303
DDK+EFW++VYGFDMSCIK++A+ EPLVDTVD NQIVT+ +LLKTMDISKM GDASFTA
Sbjct: 205 DDKVEFWDDVYGFDMSCIKRRAITEPLVDTVDGNQIVTDSKLLKTMDISKMAAGDASFTA 264
Query: 304 PFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTI 363
PFKLVAQRND+IHALVAYFDV+FT CHK MGFST GPKSRATHWKQTVLYLEDVLTI
Sbjct: 265 PFKLVAQRNDHIHALVAYFDVSFTMCHKKMGFST----GPKSRATHWKQTVLYLEDVLTI 320
Query: 364 CEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
CEGE I+GS+T+A NKKNPRDVDI L YSL G+H ISR +YKMR
Sbjct: 321 CEGETITGSMTIAQNKKNPRDVDIKLSYSLNGQHCNISRTHFYKMR 366
|
|
| UNIPROTKB|F6XFY9 PRMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
Identities = 206/369 (55%), Positives = 270/369 (73%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 126
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL
Sbjct: 127 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLA 186
Query: 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIV 280
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V
Sbjct: 187 PDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLV 246
Query: 281 TNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYN 340
TN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST
Sbjct: 247 TNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFST--- 303
Query: 341 TGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAI 400
P+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +
Sbjct: 304 -SPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCEL 362
Query: 401 SRIQYYKMR 409
S Y+MR
Sbjct: 363 SCSTDYRMR 371
|
|
| UNIPROTKB|H7C2I1 PRMT1 "Protein arginine N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
Identities = 206/369 (55%), Positives = 270/369 (73%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 126
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL
Sbjct: 127 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLA 186
Query: 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIV 280
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V
Sbjct: 187 PDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLV 246
Query: 281 TNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYN 340
TN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST
Sbjct: 247 TNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFST--- 303
Query: 341 TGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAI 400
P+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +
Sbjct: 304 -SPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCEL 362
Query: 401 SRIQYYKMR 409
S Y+MR
Sbjct: 363 SCSTDYRMR 371
|
|
| MGI|MGI:107846 Prmt1 "protein arginine N-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
Identities = 205/369 (55%), Positives = 270/369 (73%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 126
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 127 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLA 186
Query: 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIV 280
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V
Sbjct: 187 PDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLV 246
Query: 281 TNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYN 340
TN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST
Sbjct: 247 TNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFST--- 303
Query: 341 TGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAI 400
P+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +
Sbjct: 304 -SPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCEL 362
Query: 401 SRIQYYKMR 409
S Y+MR
Sbjct: 363 SCSTDYRMR 371
|
|
| UNIPROTKB|Q99873 PRMT1 "Protein arginine N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 204/365 (55%), Positives = 267/365 (73%)
Query: 49 LDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDV 104
+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEMLKD
Sbjct: 1 MENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDE 60
Query: 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164
VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV
Sbjct: 61 VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 120
Query: 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI 224
+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL DG+
Sbjct: 121 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLAPDGL 180
Query: 225 VLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQ 284
+ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN
Sbjct: 181 IFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNAC 240
Query: 285 LLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPK 344
L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P+
Sbjct: 241 LIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFST----SPE 296
Query: 345 SRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQ 404
S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 297 SPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 356
Query: 405 YYKMR 409
Y+MR
Sbjct: 357 DYRMR 361
|
|
| UNIPROTKB|E2R6B6 PRMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
Identities = 206/372 (55%), Positives = 270/372 (72%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYA---VECSQMA 157
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS ++
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGGPQIECSSIS 126
Query: 158 NMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDK 217
+ A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDK
Sbjct: 127 DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDK 186
Query: 218 WLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQN 277
WL DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD
Sbjct: 187 WLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPK 246
Query: 278 QIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFST 337
Q+VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST
Sbjct: 247 QLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFST 306
Query: 338 VYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRH 397
P+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+
Sbjct: 307 ----SPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQL 362
Query: 398 SAISRIQYYKMR 409
+S Y+MR
Sbjct: 363 CELSCSTDYRMR 374
|
|
| UNIPROTKB|Q5E949 HRMT1L2 "HMT1 hnRNP methyltransferase-like 2 isoform 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
Identities = 201/346 (58%), Positives = 256/346 (73%)
Query: 65 EAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKD 123
E C A+ S +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+ LFKD
Sbjct: 12 EVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKD 71
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI 183
KVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK+EE+
Sbjct: 72 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV 131
Query: 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK 243
ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL DG++ PD+A+LY+TAIED +YK
Sbjct: 132 ELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLAPDGLIFPDRATLYVTAIEDRQYK 191
Query: 244 DDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTA 303
D KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI + D +FT+
Sbjct: 192 DYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTS 251
Query: 304 PFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTI 363
PF L +RNDY+HALVAYF++ FT+CHK GFST P+S THWKQTV Y+ED LT+
Sbjct: 252 PFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFST----SPESPYTHWKQTVFYMEDYLTV 307
Query: 364 CEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
GE I G++ + PN KN RD+D + +G+ +S Y+MR
Sbjct: 308 KTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 353
|
|
| UNIPROTKB|Q28F07 prmt1 "Protein arginine N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
Identities = 200/346 (57%), Positives = 256/346 (73%)
Query: 65 EAMCDADVSMID-GEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKD 123
E C S + +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+ LFKD
Sbjct: 10 EVSCTQPESSVKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKD 69
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI 183
KVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK+EE+
Sbjct: 70 KVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVEEV 129
Query: 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK 243
ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL DG++ PD+A+LY+TAIED +YK
Sbjct: 130 ELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYVTAIEDRQYK 189
Query: 244 DDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTA 303
D KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI + D +FT+
Sbjct: 190 DYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVDDLTFTS 249
Query: 304 PFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTI 363
PF L +RNDYIHALVAYF++ FT+CHK GFST P+S THWKQTV Y+ED LT+
Sbjct: 250 PFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFST----SPESPYTHWKQTVFYMEDYLTV 305
Query: 364 CEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
GE I G++++ PN KN RD+D + +G+ +S Y+MR
Sbjct: 306 KTGEEIFGTISMKPNAKNNRDLDFTVDIDFKGQLCELSCSTDYRMR 351
|
|
| UNIPROTKB|Q8AV13 prmt1-a "Protein arginine N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
Identities = 201/350 (57%), Positives = 256/350 (73%)
Query: 60 TAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKF 119
T IED + + +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+
Sbjct: 24 TPIEDVNSAPPEGGVKTNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRH 83
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK
Sbjct: 84 LFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGK 143
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239
+EE+ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL DG++ PD+A+LY+TAIED
Sbjct: 144 VEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYITAIED 203
Query: 240 AEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA 299
+YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V+N L+K +DI + D
Sbjct: 204 RQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVSNACLIKEVDIYTVKVDDL 263
Query: 300 SFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLED 359
SFT+PF L +RNDYIHALVAYF++ FT+CHK GFST P+S THWKQTV Y+ED
Sbjct: 264 SFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFST----SPESPYTHWKQTVFYMED 319
Query: 360 VLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
LT+ GE I G++ + PN KN RD+D +G+ +S Y+MR
Sbjct: 320 YLTVKTGEEIFGTIGMKPNAKNNRDLDFTFDIDFKGQLCELSCSTDYRMR 369
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q54EF2 | ANM1_DICDI | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5670 | 0.7921 | 0.9501 | yes | no |
| Q9URX7 | ANM1_SCHPO | 2, ., 1, ., 1, ., - | 0.5619 | 0.7603 | 0.9147 | yes | no |
| Q5RGQ2 | ANM8B_DANRE | 2, ., 1, ., 1, ., - | 0.5951 | 0.7995 | 0.7804 | yes | no |
| Q9JIF0 | ANM1_MOUSE | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5555 | 0.8826 | 0.9730 | yes | no |
| Q9SU94 | ANM11_ARATH | 2, ., 1, ., 1, ., 1, 2, 5 | 0.7859 | 0.9046 | 0.9487 | yes | no |
| Q99873 | ANM1_HUMAN | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5589 | 0.8728 | 0.9889 | yes | no |
| Q63009 | ANM1_RAT | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5630 | 0.8630 | 1.0 | yes | no |
| Q8AV13 | ANM1A_XENLA | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5742 | 0.8459 | 0.9376 | N/A | no |
| Q28F07 | ANM1_XENTR | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5694 | 0.8361 | 0.9743 | yes | no |
| O82210 | ANM12_ARATH | 2, ., 1, ., 1, ., - | 0.8132 | 0.8239 | 0.9207 | no | no |
| Q0J2C6 | ANM1_ORYSJ | 2, ., 1, ., 1, ., - | 0.8515 | 0.7970 | 0.8423 | yes | no |
| A2Z0C0 | ANM1_ORYSI | 2, ., 1, ., 1, ., - | 0.8515 | 0.7970 | 0.8423 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 409 | |||
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-13 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 2e-09 | |
| COG4076 | 252 | COG4076, COG4076, Predicted RNA methylase [General | 3e-09 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 1e-08 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-08 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 3e-08 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 6e-08 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 8e-07 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 1e-06 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 3e-06 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 4e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 4e-06 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-06 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 8e-06 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 1e-05 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 1e-05 | |
| COG1189 | 245 | COG1189, COG1189, Predicted rRNA methylase [Transl | 2e-05 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 5e-05 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 6e-05 | |
| COG2265 | 432 | COG2265, TrmA, SAM-dependent methyltransferases re | 8e-05 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 9e-05 | |
| TIGR01444 | 144 | TIGR01444, fkbM_fam, methyltransferase, FkbM famil | 1e-04 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 1e-04 | |
| pfam03602 | 183 | pfam03602, Cons_hypoth95, Conserved hypothetical p | 1e-04 | |
| COG1092 | 393 | COG1092, COG1092, Predicted SAM-dependent methyltr | 2e-04 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 2e-04 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 5e-04 | |
| COG2520 | 341 | COG2520, COG2520, Predicted methyltransferase [Gen | 6e-04 | |
| PRK14896 | 258 | PRK14896, ksgA, 16S ribosomal RNA methyltransferas | 7e-04 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 8e-04 | |
| TIGR00536 | 284 | TIGR00536, hemK_fam, HemK family putative methylas | 0.001 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 0.001 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 0.002 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 0.003 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 0.003 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 0.003 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 0.004 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-13
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI-E 184
VLD+G GTG L+L A A V V+ S +A + A ++ + VLKG EE+
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
D+IIS L E++ + AR L G+++
Sbjct: 62 EADESFDVIIS-DPPLHHLVEDLARFLEEARRL-LKPGGVLV 101
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 119 FLFKDKVVLDVGAGTGILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL 176
+ K +LD+GAG G L L A + A + VE + A MA++ V N I V+
Sbjct: 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100
Query: 177 KGKIEEIE--LPVTKVDIIIS 195
+ I+E L D+II
Sbjct: 101 EADIKEFLKALVFASFDLIIC 121
|
Length = 248 |
| >gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 3e-09
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 16/138 (11%)
Query: 97 HEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-Q 155
H ++L+DV R + + I + + D+GAG+GILS+ A A A V A+E +
Sbjct: 11 HLDLLRDVERLAVFTSAIAE----VAEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPK 65
Query: 156 MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN---MLNTVL 212
A +A++ + G N V+ G + + D++I E + L+ E ++N VL
Sbjct: 66 RARLAEENLHVPGDVN-WEVVVGDARDYD--FENADVVICEMLDTALIEEKQVPVINAVL 122
Query: 213 YARDKWLVDDGIVLPDKA 230
++L D ++P +
Sbjct: 123 ----EFLRYDPTIIPQEV 136
|
Length = 252 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-08
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K + K VLDVG G+GIL++ AK GA V AV+ A A++ E NG + +
Sbjct: 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLP 174
Query: 177 KGKIEEIELPVTKVDIII 194
+G K D+I+
Sbjct: 175 QGD--------LKADVIV 184
|
Length = 250 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK 179
VLD+G GTG L++ A+ A V V+ S +M +A++ + IT ++G
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-ITFVQGD 59
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ + D + G +L+ + L G ++
Sbjct: 60 APDALDLLEGFDAVFI--GGGGGDLLELLDALA----SLLKPGGRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 120 LFKDKVVLDVGAGTGILSLFCA-KAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVL 176
L VLD+G GTG L+ A K G A V ++ S + AK+ + G+ NV +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENV-EFI 59
Query: 177 KGKIEEIE---LPVTKVDIIIS 195
+G IEE+ L D++IS
Sbjct: 60 QGDIEELPQLQLEDNSFDVVIS 81
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-08
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 123 DKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
VLD GAG+G L A+AG A V VE + A +A++ + G + + V+ G
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 181 EEI-ELPVTKVDIII-----SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
E+ ELP D+++ G ++ + L A + L G+++
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 8e-07
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
+ + VLDVG G+GIL++ K GA V V+ +A AK+ E NG + V
Sbjct: 156 SLVKPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVY 215
Query: 177 KGKIEEIELPVTKVDIII 194
+LP K D+++
Sbjct: 216 LPG----DLPEGKADVVV 229
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
DK +LD+G G+G +++ AK G A V AV+ S A +A++ E NG V+ V
Sbjct: 110 LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL 169
Query: 180 IEEIELPVTKVDIIIS 195
E + K D+I+S
Sbjct: 170 FEPLR---GKFDLIVS 182
|
Length = 280 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGK 179
+ D+GAGTG +++ A AG + V A+E + + ++ G N+ V++G
Sbjct: 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNL-EVVEGD 92
Query: 180 IEEIELPVTKVDII 193
E + D I
Sbjct: 93 APEALPDLPSPDAI 106
|
Length = 187 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEE 182
K VLD+GAGTGIL++ A GA+ V AV+ + +A+ E G +E
Sbjct: 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---------GDVEF 97
Query: 183 IELPVTKVD 191
+ V+
Sbjct: 98 VVADVSDFR 106
|
Length = 198 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-06
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LD+G GTG + A+AG + V V+ S+ +AK+ + G + + ++
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLP 58
Query: 185 LPVTKVDIIISEWMGYFLLFE 205
D++I
Sbjct: 59 FEEGSFDLVIC-AGLSLDYLS 78
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-06
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 127 LDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 185
LDVG GTG+L+ A+ G A V V+ +M +A++ + G E++
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-------APRKFVVGDAEDLPF 53
Query: 186 PVTKVDIIISEWM 198
P D+++S +
Sbjct: 54 PDESFDVVVSSLV 66
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K L K K VLDVG G+GIL++ AK GA V V+ A A++ NG ++
Sbjct: 158 KLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217
Query: 177 KGKIEEIELPVTKVDIII 194
+ E D+I+
Sbjct: 218 GFLLLE-VPENGPFDVIV 234
|
Length = 300 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 125 VVLDVGAGTGILSLFCAKA-GA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 181
VLD+G+G G A+ G V V+ + +M A+ G++NV G+IE
Sbjct: 80 TVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFRLGEIE 138
Query: 182 EIELPVTKVDIIIS 195
+ + VD+IIS
Sbjct: 139 ALPVADNSVDVIIS 152
|
Length = 272 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
VLD+G G G+L AK V V+ + A A+ + ANG N
Sbjct: 31 LGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDL 90
Query: 180 IEEIELPVTKVDIIIS 195
+E K D+IIS
Sbjct: 91 YSAVE--PGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE 152
+ K KVVLD+G+ TG + + GA HVYAV+
Sbjct: 75 ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVD 109
|
Length = 245 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 116 QNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVE-CSQMANMAKQIVEANGFSNVI 173
+ K +F VLD+G GTG L+ K A A + + M AK + N +
Sbjct: 28 KEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSEN-----V 82
Query: 174 TVLKGKIEEIELPVTKVDIIIS 195
+ G E++ L + D+I+S
Sbjct: 83 QFICGDAEKLPLEDSSFDLIVS 104
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITV-L 176
KDK V+DVG G+GILS+ K GAA V ++ A++ E N S+ + V L
Sbjct: 156 LDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 215
Query: 177 KGKIEEIELPVTKVDIII 194
+ IE D+I+
Sbjct: 216 IYLEQPIEGK---ADVIV 230
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178
L + VLD+ G G L AK V+ VE S A++ ANG NV + G
Sbjct: 291 LAGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGIDNV-EFIAG 348
Query: 179 KIEEI 183
EE
Sbjct: 349 DAEEF 353
|
Length = 432 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 9e-05
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
VLD+G G+G ++L AK A V AV+ S A +A++ G NV L+
Sbjct: 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNV-EFLQSD 145
Query: 180 IEEIELPVTKVDIIIS 195
E LP K D+I+S
Sbjct: 146 WFE-PLPGGKFDLIVS 160
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 125 VVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITV---LKGK 179
VV+DVGA G SL+ A+ GA V A E + ++ V+ N NV+ + + +
Sbjct: 1 VVIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60
Query: 180 IEEIELPVT 188
E+E V+
Sbjct: 61 DGELEFNVS 69
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-04
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
+ VLD+G G+G ++L AK A V AV+ S A +A++ + + V L+G
Sbjct: 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARV-EFLQGD 166
Query: 180 IEEIELPVTKVDIIIS 195
E LP + D+I+S
Sbjct: 167 WFE-PLPGGRFDLIVS 181
|
Length = 275 |
| >gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95 | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 29/138 (21%)
Query: 103 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQ 162
D VR ++ N++ F VLD+ AG+G L L GAA V VE + A
Sbjct: 26 DRVR-EALFNIL-APYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVEKDK---KAVA 80
Query: 163 IVEAN----GFSNVITVLKGKIEEIELPVTK----VDIIISEWMGYFL-------LFENM 207
++ N G VL+ L + D++ FL L E
Sbjct: 81 TLKENLEALGLEGETAVLRNDAARALLRLAGKGPPFDLV-------FLDPPYAKGLIEEA 133
Query: 208 LNTVLYARDKWLVDDGIV 225
L + A + WL + ++
Sbjct: 134 LELL--AENGWLNPNALI 149
|
Length = 183 |
| >gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFS 170
K VL++ + TG S+ A GA+ V +V+ S+ A A++ E NG
Sbjct: 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD 266
|
Length = 393 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
+LD G G G LS+ A+ G A V A + S QM A++ G + IT G +
Sbjct: 63 TGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL 121
Query: 181 EEI 183
E +
Sbjct: 122 ESL 124
|
Length = 230 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHV------YAVECSQMANMAKQIVEANGFSN 171
K VL+VG G+GI+++ AK G V YAVEC AK + N N
Sbjct: 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVEC------AKCNAKLNNIRN 72
|
Length = 188 |
| >gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
+ + + + VLD+ AG G S+ AK G VYA++ + A K+ + N + +
Sbjct: 184 ELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPI 243
Query: 177 KGKIEEIELPVTKVDIIISEWMGYF 201
G E+ + D II MG
Sbjct: 244 LGDAREVAPELGVADRII---MGLP 265
|
Length = 341 |
| >gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVLKG 178
VL++G G G L+ AK A VYA+E ++A + + NV +++G
Sbjct: 27 DTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRD--DEIAAGNV-EIIEG 82
Query: 179 KIEEIELPVTKVDIIIS 195
+++LP + + ++S
Sbjct: 83 DALKVDLP--EFNKVVS 97
|
Length = 258 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 176
+ VL+ G G+G L+ + A+A HV E A A++ + G + +T+
Sbjct: 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLK 151
Query: 177 KGKIEEIELPVTKVDIII 194
G + E VD +
Sbjct: 152 LGDVREGIDE-EDVDAVF 168
|
Length = 256 |
| >gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGA-AHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEI 183
+LD+G G+G ++L A A V AV+ S A +A++ E N + + ++ + E
Sbjct: 118 ILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE- 176
Query: 184 ELPVTKVDIIIS 195
L K+DII+S
Sbjct: 177 PLAGQKIDIIVS 188
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVL 176
K K K VLD G GTG+LS+ AK G A V AV+ S QM MA+ + + +
Sbjct: 51 KDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFE 109
Query: 177 KGKIEEIE 184
+ +
Sbjct: 110 VNDLLSLC 117
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM-AKQIVEANGFSNVITV 175
+F VLDVG G GILS A+ G A V ++ S+ AK +G + I
Sbjct: 54 LRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN--IDY 110
Query: 176 LKGKIEEIELPVTKVDIIIS 195
+ +E++ + D++
Sbjct: 111 RQATVEDLASAGGQFDVVTC 130
|
Length = 243 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 119 FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVL 176
+ VLDV GTG ++L AK G V ++ M +A++ ++ G NV V+
Sbjct: 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVV 107
Query: 177 KGKIEEIELP 186
G E + P
Sbjct: 108 -GDAENLPFP 116
|
Length = 238 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA 157
VLD+ G+G L++ A AGA V AV+ S+ A
Sbjct: 40 VLDLCTGSGALAVAAAAAGAGSVTAVDISRRA 71
|
Length = 223 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LD+G G G L+++ A+ V V S+ A++ + A G + + V + E
Sbjct: 76 LLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE 135
Query: 185 LPVTKVDIIIS----EWMG---YFLLFENMLNTVLYARDKWLVDDGIVL 226
D I+S E +G Y F+ + L G +L
Sbjct: 136 ---EPFDRIVSVGMFEHVGKENYDDFFKKV--------YALLKPGGRML 173
|
Length = 283 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.004
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIE 184
VLD+G+G G + + AHV+ V+ C +M N+AK N I I + +
Sbjct: 56 VLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKD 112
Query: 185 LPVTKVDIIISEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 242
P D+I S L + + L Y KWL +GI+L I D Y
Sbjct: 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCY---KWLKPNGILL----------ITD--Y 157
Query: 243 KDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNC--QLLKTMDIS 292
DKIE W+ F K++ + P+ + D ++ +C Q + DIS
Sbjct: 158 CADKIENWDE--EFKAYIKKRKYTLIPIQEYGD---LIKSCNFQNVVAKDIS 204
|
Length = 263 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 409 | |||
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 100.0 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 100.0 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 100.0 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 99.96 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 99.88 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 99.87 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.81 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.8 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.76 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.74 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.73 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.72 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.64 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.63 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.63 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.63 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.63 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.62 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.61 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.61 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 99.6 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.6 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.6 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.6 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.6 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.59 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.59 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.58 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.57 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.56 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.56 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.55 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.55 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.54 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.53 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.53 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.53 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.51 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.51 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.51 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.51 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.5 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.5 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.49 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.49 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.48 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.47 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.47 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.47 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.46 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.46 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.46 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.45 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.45 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.44 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.44 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.43 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.43 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.43 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.43 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.43 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.43 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.43 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.43 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.42 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.41 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.41 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.41 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.41 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.41 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.41 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.4 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.4 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.4 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.39 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.39 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.38 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.38 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.38 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.38 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.37 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.36 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.36 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.36 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.36 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.35 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.35 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.35 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.34 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.34 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.33 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.33 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.33 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.33 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.32 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.32 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.32 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.31 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.31 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.31 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.3 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.3 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.29 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.29 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.28 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.28 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.27 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.27 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.27 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.26 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.26 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.25 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.25 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.25 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.25 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.24 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.24 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.24 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.24 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.24 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.24 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.24 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.23 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.23 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.23 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.23 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.22 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.22 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.21 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.21 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.2 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.2 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.2 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.19 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.19 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.17 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.16 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.16 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.15 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.15 | |
| PLN02476 | 278 | O-methyltransferase | 99.15 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.14 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.13 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.13 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.11 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.11 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.11 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.09 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.08 | |
| PLN02366 | 308 | spermidine synthase | 99.08 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.07 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.07 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.07 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.06 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.04 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.03 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.03 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.03 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.02 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.01 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.01 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.0 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.99 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.98 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.98 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.98 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.96 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.95 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.94 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.93 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.91 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.88 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.87 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 98.87 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.87 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.85 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.83 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.83 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.82 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.79 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.78 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.77 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.75 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.75 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.74 | |
| PLN02823 | 336 | spermine synthase | 98.74 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.74 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.72 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.69 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.68 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.67 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.67 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.66 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.66 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.65 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.65 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.65 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.65 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.64 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.62 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.6 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.58 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.58 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.55 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.54 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.53 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.51 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.49 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.48 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.48 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.47 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.46 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.43 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.41 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.37 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.36 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.32 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.32 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.31 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.3 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.29 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.27 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.25 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.24 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.24 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.24 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.22 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.21 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.19 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.14 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.12 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.12 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.11 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.08 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.05 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.0 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.97 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.96 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.96 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.9 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.9 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.87 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.84 | |
| PHA01634 | 156 | hypothetical protein | 97.77 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.76 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.74 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.74 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.73 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.7 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.69 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.69 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.64 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.63 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.59 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.54 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.52 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.45 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.43 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.39 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.34 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.3 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.19 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.18 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.11 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.06 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.99 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.95 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.91 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.83 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.79 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.62 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.59 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.53 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.53 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.47 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.37 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.31 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.28 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.23 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.22 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.11 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.08 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.06 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 95.98 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.94 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.87 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.83 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 95.71 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.67 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.53 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.15 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.11 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.92 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 94.82 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 94.8 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.59 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 94.53 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.49 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.22 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 94.21 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 94.11 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 94.08 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.98 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.91 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 93.77 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 93.63 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.45 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 93.41 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 93.33 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 93.22 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.18 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.15 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 92.91 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 92.89 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.39 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.39 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 92.37 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 92.32 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.22 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 92.13 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 92.0 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 91.88 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 91.85 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.63 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 91.55 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.55 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 91.32 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 91.24 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.15 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 91.09 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 91.04 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 90.96 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 90.89 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 90.82 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 90.79 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 90.56 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 90.34 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 90.17 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 90.01 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 89.63 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.42 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 89.31 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 88.65 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 88.59 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 88.56 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 88.44 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 88.22 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 88.03 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 87.92 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 87.59 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 87.46 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 87.11 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.75 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 86.73 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.6 | |
| PLN02494 | 477 | adenosylhomocysteinase | 86.21 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 86.2 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 85.7 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.61 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 85.54 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 85.48 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 85.48 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 85.38 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 85.27 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 85.14 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.95 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 84.69 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.57 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 84.51 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 84.5 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 84.38 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 84.34 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 84.23 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 84.13 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 84.11 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 83.93 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 83.75 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.75 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 83.34 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 83.29 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 83.25 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 83.1 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.08 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 82.96 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 82.77 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 82.61 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 82.58 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 82.14 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 82.1 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 82.02 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 81.72 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 81.7 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 81.65 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 81.64 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 81.5 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 81.42 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 81.33 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 81.3 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 81.29 | |
| TIGR00853 | 95 | pts-lac PTS system, lactose/cellobiose family IIB | 81.07 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 80.72 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 80.46 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 80.28 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 80.21 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 80.08 |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=469.45 Aligned_cols=326 Identities=64% Similarity=1.070 Sum_probs=316.0
Q ss_pred CCccccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHH
Q 015306 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM 159 (409)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~ 159 (409)
....++.||+.|.++++|.+||+|.+|+.+|+.++..+.++..+++|||||||+|++++++|++|+++|+|||.|.+++.
T Consensus 18 d~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~ 97 (346)
T KOG1499|consen 18 DMTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADF 97 (346)
T ss_pred ccchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999997799
Q ss_pred HHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccc
Q 015306 160 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239 (409)
Q Consensus 160 a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~ 239 (409)
|++.+..|++.+.|+++++.++++.+|.+++|+|+|+||||+++.+.+++.++.+..++|+|||.++|..+++|++++..
T Consensus 98 a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d 177 (346)
T KOG1499|consen 98 ARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIED 177 (346)
T ss_pred HHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccC
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhccccccccccchhhhhhhccCCeEEeeCCCcccCcccceeEeeCCCCCCCCCceeeeeEEEEeecceEeEEE
Q 015306 240 AEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALV 319 (409)
Q Consensus 240 ~~~~~~~~~~w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 319 (409)
+.+....+.||.++|||||+++.+.+..+|+++.+.+.+++++|+.+.++|+.+...+++.++.+|++.+.+++.+|||+
T Consensus 178 ~~~~~~~i~fW~~Vygfdms~~~~~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~F~s~f~l~v~r~~~i~g~v 257 (346)
T KOG1499|consen 178 DSYKDDKIGFWDDVYGFDMSCIKKIAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLSFTSPFKLKVTRNGYLHAFV 257 (346)
T ss_pred chhhhhhcCccccccccchhhhhhhhhcccceeccChhHhcccceeeEEeeeeeeeccceeeccceEEEEccCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCC--ceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEEcce-
Q 015306 320 AYFDVTFTKCH--KLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGR- 396 (409)
Q Consensus 320 ~wf~~~l~~~~--~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~- 396 (409)
.|||+.|..++ ..+.+| |+|.++.|||+|+||+|++|+.|++|+.|.+++.+++++.++|++++.++|+++++
T Consensus 258 ~yFDv~F~~~~~~~~~~fS----T~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~~R~l~~~l~~~~~~~~ 333 (346)
T KOG1499|consen 258 AYFDVEFTGCHGKKRLGFS----TSPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKNNRDLDISLSLNFKGQG 333 (346)
T ss_pred EEEEEeeccCCCCCcceee----cCCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCCCccceEEEEEecCCcc
Confidence 99999999866 789999 99999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecceEEeeeC
Q 015306 397 HSAISRIQYYKMR 409 (409)
Q Consensus 397 ~~~~~~~~~~~~~ 409 (409)
..+++.++.|+|+
T Consensus 334 ~~~~~~~~~y~~~ 346 (346)
T KOG1499|consen 334 LCSFSESDSYPMR 346 (346)
T ss_pred ccccccccccccC
Confidence 7779999999986
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=331.48 Aligned_cols=310 Identities=39% Similarity=0.646 Sum_probs=276.3
Q ss_pred CCCccccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHH
Q 015306 79 DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMAN 158 (409)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~ 158 (409)
....+...||..|+.....++|+.|..|+..|.++|..+.....++.|||+|||+|+++++++++|+++|++||.|+|++
T Consensus 134 tEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAq 213 (517)
T KOG1500|consen 134 TEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQ 213 (517)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHH
Confidence 33445567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEcc
Q 015306 159 MAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 238 (409)
Q Consensus 159 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~ 238 (409)
.|++.+..|.+.++|+++.+.++++.+| +++|+|++++|++.+.+|.+++..+.+. ++|||.|.++|....+.++|+.
T Consensus 214 yA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFs 291 (517)
T KOG1500|consen 214 YARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFS 291 (517)
T ss_pred HHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccc
Confidence 9999999999999999999999999999 9999999999999999999999999988 9999999999999999999999
Q ss_pred ccccchh---hhcccc--ccccccchhhhhhh----ccCCeEEeeCCCcccCcccceeEeeCCCCCCCCC-ceeeeeEEE
Q 015306 239 DAEYKDD---KIEFWN--NVYGFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA-SFTAPFKLV 308 (409)
Q Consensus 239 ~~~~~~~---~~~~w~--~~~g~d~~~~~~~~----~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~-~~~~~~~~~ 308 (409)
+..+..+ +.+||- .+||.|++++.... +.+|.++.+++..++..+ ....+||....++++ ....+++|.
T Consensus 292 DE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~s-v~h~~dF~~~kEedlh~i~iPlkF~ 370 (517)
T KOG1500|consen 292 DEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKS-VFHVIDFLNMKEEDLHEIDIPLKFH 370 (517)
T ss_pred hHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccc-hHhhhhhhhcccchheeecccceeh
Confidence 8877653 567886 58999999886654 678999988776555544 456889999999887 467888999
Q ss_pred EeecceEeEEEEEEEEEEcCCCceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEE
Q 015306 309 AQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIM 388 (409)
Q Consensus 309 ~~~~g~~~g~~~wf~~~l~~~~~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~ 388 (409)
+...|.+||+++|||+.|++..-.+.+| |.|..|.|||.|....|..|+.|++|++|++++.+-.++.+..+.++.
T Consensus 371 ~~~~g~iHGLAfWFDV~F~GS~~~~wls----Tap~apltHwyqvrCll~~Pi~v~aGq~ltGr~~LiA~~~QSY~i~i~ 446 (517)
T KOG1500|consen 371 ALQCGRIHGLAFWFDVLFDGSTVQVWLS----TAPTAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLLIANSRQSYDITIT 446 (517)
T ss_pred hhhhcceeeeeeEEEEEeccceEEEccC----CCCCCCcccceeeeeeccCchhhhcCCeeeeeEEEEEccccceeEEEE
Confidence 9999999999999999999866667889 999999999999999999999999999999999999999887555555
Q ss_pred EEEEEcc
Q 015306 389 LKYSLQG 395 (409)
Q Consensus 389 ~~~~~~~ 395 (409)
++.+-..
T Consensus 447 l~~~~~l 453 (517)
T KOG1500|consen 447 LSAKMTL 453 (517)
T ss_pred EEeeeee
Confidence 5555443
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=338.70 Aligned_cols=274 Identities=32% Similarity=0.486 Sum_probs=223.8
Q ss_pred hhHHhhcChHhHHHHHHHHHhccCC----C----CCCEEEEEcCCCChHHHHHHHcC-----CCEEEEEecHH-HHHHHH
Q 015306 96 IHEEMLKDVVRTKSYQNVIYQNKFL----F----KDKVVLDVGAGTGILSLFCAKAG-----AAHVYAVECSQ-MANMAK 161 (409)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~l~~~~~~----~----~~~~VLDlGcG~G~l~~~la~~g-----~~~V~~vD~s~-~~~~a~ 161 (409)
.+..+.+|..++..|.+||.++... . .++.|||||||+|.|+..+++++ +.+|+|||.|+ ++..++
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 3445678999999999998764321 1 36789999999999999998875 67999999999 888888
Q ss_pred HHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccc
Q 015306 162 QIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241 (409)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 241 (409)
+.+..+++.++|+++++|++++..+ .++|+||||+||+++.+|.. +.++.++.++|||||++||+.+++|++|+.++.
T Consensus 232 ~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nEl~-pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~ 309 (448)
T PF05185_consen 232 KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSELLGSFGDNELS-PECLDAADRFLKPDGIMIPSSYTSYLAPISSPK 309 (448)
T ss_dssp HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE---BTTBTTTSH-HHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HH
T ss_pred HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEeccCCccccccC-HHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHH
Confidence 8888999999999999999999988 79999999999999988854 567899999999999999999999999999998
Q ss_pred cchhhhccccccccccchhhhhhhccCCeEEeeCCCcccCcc-cceeEeeCCCCC---CCCCceeeeeEEEEeecceEeE
Q 015306 242 YKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNC-QLLKTMDISKMG---PGDASFTAPFKLVAQRNDYIHA 317 (409)
Q Consensus 242 ~~~~~~~~w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p-~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~g~~~g 317 (409)
++.+...+|. ...+..|++..+.+...|+++ ..+++|++.+.. .++..+...++|.+.++|.+||
T Consensus 310 l~~~~~~~~~-----------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhG 378 (448)
T PF05185_consen 310 LYQEVRNWWN-----------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHG 378 (448)
T ss_dssp HHHHHHHHHG-----------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEE
T ss_pred HHHHHHhhcc-----------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCcEEEE
Confidence 8776554333 445678998888888889988 899999988776 3566789999999999999999
Q ss_pred EEEEEEEEEcCCCceeEeecccccCCCC----CCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEE
Q 015306 318 LVAYFDVTFTKCHKLMGFSTVYNTGPKS----RATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 393 (409)
Q Consensus 318 ~~~wf~~~l~~~~~~~~ls~~~~t~p~~----~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~ 393 (409)
|++||++.|++ ++.|| |+|.. +.+||+|++|||++|+.|++|++|+++++++.+.. .|+++|.+
T Consensus 379 fagwFd~~Ly~---~V~LS----t~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~~~-----~vWYEW~v 446 (448)
T PF05185_consen 379 FAGWFDAVLYG---DVVLS----TSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTDDR-----KVWYEWSV 446 (448)
T ss_dssp EEEEEEEEEEC---SEEEE----SSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECCST-----CEEEEEEE
T ss_pred EEEEEEEEeeC---Ceeee----cCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcCCC-----cEEEEEEE
Confidence 99999999996 69999 99987 78999999999999999999999999999887653 68888887
Q ss_pred c
Q 015306 394 Q 394 (409)
Q Consensus 394 ~ 394 (409)
+
T Consensus 447 ~ 447 (448)
T PF05185_consen 447 E 447 (448)
T ss_dssp E
T ss_pred e
Confidence 5
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=234.79 Aligned_cols=271 Identities=23% Similarity=0.314 Sum_probs=220.1
Q ss_pred hhcChHhHHHHHHHHHhccCCC-------CCCEEEEEcCCCChHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHH
Q 015306 100 MLKDVVRTKSYQNVIYQNKFLF-------KDKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECSQ-MANMAKQIVEA 166 (409)
Q Consensus 100 ~l~d~~r~~~~~~~l~~~~~~~-------~~~~VLDlGcG~G~l~~~la~~-----g~~~V~~vD~s~-~~~~a~~~~~~ 166 (409)
+-+|......|.+||.+++... ...+|+-+|+|.|-+.....++ -..++++||.+| ++...+. ...
T Consensus 338 FEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~ 416 (649)
T KOG0822|consen 338 FEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNF 416 (649)
T ss_pred hhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hch
Confidence 4557777777877776543211 1347889999999886655442 133899999999 7777665 455
Q ss_pred cCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccchhh
Q 015306 167 NGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDK 246 (409)
Q Consensus 167 ~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~ 246 (409)
..|+++|+++.+|++.+..|.+++|++|++.+|++..+|-. +.+++.+.++|||+|+.||.+++.|+.|+.++.++++.
T Consensus 417 ~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELS-PECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v 495 (649)
T KOG0822|consen 417 ECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELS-PECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEV 495 (649)
T ss_pred hhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCC-HHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHH
Confidence 57889999999999999866689999999999998887654 57888899999999999999999999999999887764
Q ss_pred hccccccccccchhhhhhhccCCeEEeeCCCcccCcccceeEeeCCCCC-CCCCceeeeeEEEEeecceEeEEEEEEEEE
Q 015306 247 IEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMG-PGDASFTAPFKLVAQRNDYIHALVAYFDVT 325 (409)
Q Consensus 247 ~~~w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~ 325 (409)
...- ..-.+..|++.++.+...|++|+.+++|...... .-+..+....+|.+..+|.+|||++||++.
T Consensus 496 ~a~~-----------~~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd~~ 564 (649)
T KOG0822|consen 496 KATN-----------DPNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFDAV 564 (649)
T ss_pred HhcC-----------CccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEeecchhhhhh
Confidence 3210 0134678899999999999999999999877653 223356788899999999999999999999
Q ss_pred EcCCCceeEeecccccCCCCC---CCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEEcc
Q 015306 326 FTKCHKLMGFSTVYNTGPKSR---ATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 395 (409)
Q Consensus 326 l~~~~~~~~ls~~~~t~p~~~---~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~ 395 (409)
|+. +|.|| +.|.+. ..+|++++|||++|+.|.+|++|+++||+..+. ..||++|.++.
T Consensus 565 LYk---dI~LS----I~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d~-----~kVWYEW~v~~ 625 (649)
T KOG0822|consen 565 LYK---DIFLS----IEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVDS-----TKVWYEWSVES 625 (649)
T ss_pred hhh---eeeEe----eccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeCC-----ceeEEEEEeee
Confidence 996 89999 888754 468999999999999999999999999988766 47999999884
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=190.56 Aligned_cols=285 Identities=18% Similarity=0.202 Sum_probs=198.9
Q ss_pred HhhcChHhHHHHHHHHHhccCC------------------------------C---CCCEEEEEcCCCChHHHHHHH---
Q 015306 99 EMLKDVVRTKSYQNVIYQNKFL------------------------------F---KDKVVLDVGAGTGILSLFCAK--- 142 (409)
Q Consensus 99 ~~l~d~~r~~~~~~~l~~~~~~------------------------------~---~~~~VLDlGcG~G~l~~~la~--- 142 (409)
.+-+|....+.|.++|.+.+.. . ....|+-+|+|.|-|...+.+
T Consensus 644 VFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak 723 (1072)
T PTZ00357 644 VFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVS 723 (1072)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHH
Confidence 3556778888888877665410 0 113689999999988555444
Q ss_pred -cC-CCEEEEEecHH-HHHHHHHHH-HHcCC-------CCcEEEEEcccccccCCC-----------CceeEEEEecccc
Q 015306 143 -AG-AAHVYAVECSQ-MANMAKQIV-EANGF-------SNVITVLKGKIEEIELPV-----------TKVDIIISEWMGY 200 (409)
Q Consensus 143 -~g-~~~V~~vD~s~-~~~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~~-----------~~~DvVvs~~~~~ 200 (409)
.| ..+|++||.++ .+.....+. ....| .++|+++..|++.+..+. +++|+||||++|+
T Consensus 724 ~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGS 803 (1072)
T PTZ00357 724 ALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGS 803 (1072)
T ss_pred HcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhcc
Confidence 23 23899999996 554444433 33455 346999999999986431 3799999999999
Q ss_pred cccChhHHHHHHHHHHhcccC----Ce-------EEEccCCceEEEEccccccchhhhccccccccccch-----hhhhh
Q 015306 201 FLLFENMLNTVLYARDKWLVD----DG-------IVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS-----CIKKQ 264 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~Lkp----gG-------~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~d~~-----~~~~~ 264 (409)
+..+|-. +.+|+.+.+.||+ +| +.||+.++.|+.|+.++.++......- ..|+... .....
T Consensus 804 FGDNELS-PECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~~--~~gltvP~p~c~~~haa 880 (1072)
T PTZ00357 804 LGDNELS-PECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEAA--VKGLTVPPPGCHDHHAA 880 (1072)
T ss_pred cccccCC-HHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHhh--hcccccCCccccccchh
Confidence 9888755 4677777788875 55 589999999999999998876532210 1111000 00112
Q ss_pred hccCCeEEeeCCCcccCcccceeEeeCCCCCC-----------------CCCceeeeeEEEEeecceEeEEEEEEEEEEc
Q 015306 265 AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGP-----------------GDASFTAPFKLVAQRNDYIHALVAYFDVTFT 327 (409)
Q Consensus 265 ~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~ 327 (409)
.+..+++..+.....|+.|+++++|...+... .+..+.+.+.|.+..++++|||++||++.|+
T Consensus 881 ~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdAvLY 960 (1072)
T PTZ00357 881 LNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAVLY 960 (1072)
T ss_pred hcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEEEee
Confidence 24567887777777889999999998865442 1124678899999999999999999999999
Q ss_pred CCC--ceeEeecccccCCCCC---CCCceeEEEecC---CceecCCCC---------EEEEEEEEeeCCCCCceeEEEEE
Q 015306 328 KCH--KLMGFSTVYNTGPKSR---ATHWKQTVLYLE---DVLTICEGE---------AISGSLTVAPNKKNPRDVDIMLK 390 (409)
Q Consensus 328 ~~~--~~~~ls~~~~t~p~~~---~~~W~q~v~~l~---~p~~v~~g~---------~i~~~~~~~~~~~~~r~~~~~~~ 390 (409)
... ..+.|| |.|... .-+|++.+|||+ .+..++.|+ .|.+.+.++.+-... .|+++
T Consensus 961 kDVt~~~V~LS----I~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e~---rVwYe 1033 (1072)
T PTZ00357 961 QSATAPATIIA----TAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQ---RVWYE 1033 (1072)
T ss_pred cCCCccceEee----cCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeeeccccccc---eEEEE
Confidence 611 126799 999754 357999999999 667777887 677666655543443 35555
Q ss_pred EEE
Q 015306 391 YSL 393 (409)
Q Consensus 391 ~~~ 393 (409)
|.+
T Consensus 1034 w~v 1036 (1072)
T PTZ00357 1034 WSV 1036 (1072)
T ss_pred EEE
Confidence 544
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-22 Score=187.01 Aligned_cols=258 Identities=22% Similarity=0.298 Sum_probs=192.6
Q ss_pred hhHHhhcChHhHHHHHHHHHhccCCCC-----C-CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC
Q 015306 96 IHEEMLKDVVRTKSYQNVIYQNKFLFK-----D-KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG 168 (409)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~l~~~~~~~~-----~-~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~ 168 (409)
-...|++|..|+.+|+..|.+.....+ | ..|||||+|||+++++++++|+..|+|+|.-. |.+.|++....||
T Consensus 34 sy~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng 113 (636)
T KOG1501|consen 34 SYLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG 113 (636)
T ss_pred hHHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC
Confidence 344699999999999999987643222 2 26999999999999999999999999999999 9999999999999
Q ss_pred CCCcEEEEEcccccccCC-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccchhhh
Q 015306 169 FSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKI 247 (409)
Q Consensus 169 ~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~ 247 (409)
++++|+++....+++... ..+.|+++.+.+..-+.+++.++.+-++..+++++|...+|.++++|++++++..++.-..
T Consensus 114 ~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~~nd 193 (636)
T KOG1501|consen 114 MSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCNLND 193 (636)
T ss_pred CccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhhhhc
Confidence 999999999999998754 3469999999888888889999999999999999999999999999999999876543110
Q ss_pred cc---ccccccccch--hhhhhhccCC------eEEee-CCCcccCcccceeEeeCCCCCCCCCceeeeeEEEEeecceE
Q 015306 248 EF---WNNVYGFDMS--CIKKQAMMEP------LVDTV-DQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYI 315 (409)
Q Consensus 248 ~~---w~~~~g~d~~--~~~~~~~~~p------~~~~~-~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (409)
.+ -....|..+. .+... ...+ +.+.. ...++|+++..+|.+||...........-.+.+.+...|++
T Consensus 194 l~~~~~~ts~gv~~~p~~lesc-~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~~~~~r~~va~~Sg~~ 272 (636)
T KOG1501|consen 194 LRNNEAKTSDGVRLVPPGLESC-FGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSEIEELRPPVAVHSGPL 272 (636)
T ss_pred cccccccccCCcccCCCccccC-CCchhHHHHHHhhcchhhheeecCcceeEEeecchhhhcchhhhhhcCcccccccch
Confidence 00 0011121110 00000 0000 11222 23478999999999999954433222222445567789999
Q ss_pred eEEEEEEEEEEcCCCceeEeecccccCCCCC---------CCCceeEEEecCC
Q 015306 316 HALVAYFDVTFTKCHKLMGFSTVYNTGPKSR---------ATHWKQTVLYLED 359 (409)
Q Consensus 316 ~g~~~wf~~~l~~~~~~~~ls~~~~t~p~~~---------~~~W~q~v~~l~~ 359 (409)
..++.||+.+++. .+..-+. .+|... ..||.|+++++++
T Consensus 273 ~~~l~wwdi~mD~-~g~~f~~----m~p~w~~~~~~~~~~~~~weq~c~y~~~ 320 (636)
T KOG1501|consen 273 RSNLLWWDISMDQ-FGFSFLV----MQPLWTGVTIGNSVFGLLWEQACPYPKE 320 (636)
T ss_pred hheeeeeeeeecc-CcceEEE----ecceecCCChHHHHHHHHHHHhcCCChh
Confidence 9999999999995 3345566 777642 2589999999884
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-20 Score=165.52 Aligned_cols=154 Identities=22% Similarity=0.272 Sum_probs=124.0
Q ss_pred ccCCCcccCCCCCCCccccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCC
Q 015306 67 MCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146 (409)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~ 146 (409)
+.+++..++++|+.++ ..||+..+++...+.+ +..|..-+.+.+.. ....+|.+|||||||.|+++..+|+.|+
T Consensus 9 ~~~id~~e~~~F~~la--~~wwd~~g~f~~LH~~--N~~rl~~i~~~~~~-~~~l~g~~vLDvGCGgG~Lse~mAr~Ga- 82 (243)
T COG2227 9 TQNVDYKELDKFEALA--SRWWDPEGEFKPLHKI--NPLRLDYIREVARL-RFDLPGLRVLDVGCGGGILSEPLARLGA- 82 (243)
T ss_pred cccCCHHHHHHHHHHH--hhhcCCCCceeeeeee--ccchhhhhhhhhhc-ccCCCCCeEEEecCCccHhhHHHHHCCC-
Confidence 3457777888888888 8899988887755533 23333222222221 1126899999999999999999999995
Q ss_pred EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEE
Q 015306 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (409)
Q Consensus 147 ~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (409)
.|+|+|+++ +++.|+.....+++. +.+.+..++++....++||+|+|. .++.|-++++.+++++.+++||||.+
T Consensus 83 ~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cm---EVlEHv~dp~~~~~~c~~lvkP~G~l 157 (243)
T COG2227 83 SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCM---EVLEHVPDPESFLRACAKLVKPGGIL 157 (243)
T ss_pred eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEh---hHHHccCCHHHHHHHHHHHcCCCcEE
Confidence 999999999 999999999999875 889999999988766899999994 44777789999999999999999999
Q ss_pred EccCCc
Q 015306 226 LPDKAS 231 (409)
Q Consensus 226 ip~~~~ 231 (409)
+.++..
T Consensus 158 f~STin 163 (243)
T COG2227 158 FLSTIN 163 (243)
T ss_pred EEeccc
Confidence 987655
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-19 Score=160.87 Aligned_cols=114 Identities=23% Similarity=0.341 Sum_probs=102.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
.|++.+.......+|.+|||||||||.+++.+++ .|..+|+|+|+|+ |++.|++.....++.+ ++|+++|+++++++
T Consensus 38 ~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~ 116 (238)
T COG2226 38 LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFP 116 (238)
T ss_pred HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCC
Confidence 5666666655556899999999999999999999 5778999999999 9999999999988877 99999999999999
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+.+||+|.+ .+.+.+-.+++.+|+++.|+|||||+++
T Consensus 117 D~sFD~vt~---~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 117 DNSFDAVTI---SFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred CCccCEEEe---eehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 999999997 5668888899999999999999999876
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-18 Score=164.31 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=121.4
Q ss_pred cCCCcccCCCCCCCccccccccccCchhhhHHhhcChHhHHHHHHHHHhcc-------CCCCCCEEEEEcCCCChHHHHH
Q 015306 68 CDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNK-------FLFKDKVVLDVGAGTGILSLFC 140 (409)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~-------~~~~~~~VLDlGcG~G~l~~~l 140 (409)
..++..++.+|+.++ +.||+..+.+..++.| +..|...+.+.+.+.. ...++.+|||||||+|.++..+
T Consensus 74 ~s~~~~e~~~f~~~a--~~WW~~~g~~~~lh~~--N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~L 149 (322)
T PLN02396 74 TSLNEDELAKFSAIA--DTWWHSEGPFKPLHQM--NPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPL 149 (322)
T ss_pred CCCCHHHHHHHHHHH--HHhcCCCCCchHHHHh--ChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHH
Confidence 367788888888888 5899998887765555 4444444444443221 1246779999999999999999
Q ss_pred HHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcc
Q 015306 141 AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 219 (409)
Q Consensus 141 a~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~L 219 (409)
++.|+ +|+|||+++ +++.|+++....+...++++++++++++++++++||+|++..+ +.|..++..++.++.++|
T Consensus 150 a~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v---LeHv~d~~~~L~~l~r~L 225 (322)
T PLN02396 150 ARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV---IEHVANPAEFCKSLSALT 225 (322)
T ss_pred HHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH---HHhcCCHHHHHHHHHHHc
Confidence 98865 899999999 9999998877666555799999999998877689999999544 555567889999999999
Q ss_pred cCCeEEEccC
Q 015306 220 VDDGIVLPDK 229 (409)
Q Consensus 220 kpgG~lip~~ 229 (409)
||||.++...
T Consensus 226 kPGG~liist 235 (322)
T PLN02396 226 IPNGATVLST 235 (322)
T ss_pred CCCcEEEEEE
Confidence 9999998653
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=133.96 Aligned_cols=106 Identities=28% Similarity=0.348 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc-ccccCCCCceeEEEEec-
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIISEW- 197 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~DvVvs~~- 197 (409)
|+.+|||||||+|.+++.+++ .+..+|+|+|+|+ +++.|++++...+..++++++++|+ ...... ++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 578999999999999999999 4666999999999 9999999998888888999999999 444443 7899999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
....+.+......+++.+.+.|+|||+++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 2232333366788999999999999999864
|
... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=152.44 Aligned_cols=114 Identities=22% Similarity=0.272 Sum_probs=82.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
|++.+.+.....+|.+|||+|||||.++..+++. + ..+|+|+|+|+ |++.|+++....+.. +|+++++|+++++++
T Consensus 35 wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFP 113 (233)
T ss_dssp --SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-
T ss_pred HHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCC
Confidence 3333443345678899999999999999999884 3 45999999999 999999999988876 699999999999999
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++||+|++. +.+.+..++...++++.|+|||||+++.
T Consensus 114 d~sfD~v~~~---fglrn~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 114 DNSFDAVTCS---FGLRNFPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp TT-EEEEEEE---S-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred CCceeEEEHH---hhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 9999999984 4466667788999999999999999873
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-18 Score=150.73 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=115.8
Q ss_pred CcccCCCCCCCccccccccccCchhhhHHhhcChHhHHHHHHHHHhcc-CCCC------CCEEEEEcCCCChHHHHHHHc
Q 015306 71 DVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNK-FLFK------DKVVLDVGAGTGILSLFCAKA 143 (409)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~-~~~~------~~~VLDlGcG~G~l~~~la~~ 143 (409)
+..++.++..++ ..||+.-+.+...+.| +..|.....+-+.... ...| |++|||+|||+|+++..||+.
T Consensus 35 ~~~eV~~f~~la--~~wwd~~g~~~~Lh~m--n~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArl 110 (282)
T KOG1270|consen 35 DVDEVKKFQALA--FTWWDEEGVRHPLHSM--NQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARL 110 (282)
T ss_pred cHHHHHHHHHhc--ccccccccchhhhhhc--cchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhh
Confidence 335566776666 7799988887766666 5666666666666544 1233 478999999999999999999
Q ss_pred CCCEEEEEecHH-HHHHHHHHHHHcCCCC-----cEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHh
Q 015306 144 GAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDK 217 (409)
Q Consensus 144 g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~ 217 (409)
|+ .|+|||+++ +++.|++........+ ++++.+.+++.+. ++||.|+|..+ +.|..++..+++.+.+
T Consensus 111 ga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsev---leHV~dp~~~l~~l~~ 183 (282)
T KOG1270|consen 111 GA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEV---LEHVKDPQEFLNCLSA 183 (282)
T ss_pred CC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHH---HHHHhCHHHHHHHHHH
Confidence 86 999999999 9999999865544333 3777888887765 56999999554 7777899999999999
Q ss_pred cccCCeEEEccC
Q 015306 218 WLVDDGIVLPDK 229 (409)
Q Consensus 218 ~LkpgG~lip~~ 229 (409)
+|||||.++..+
T Consensus 184 ~lkP~G~lfitt 195 (282)
T KOG1270|consen 184 LLKPNGRLFITT 195 (282)
T ss_pred HhCCCCceEeee
Confidence 999999988654
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=118.54 Aligned_cols=94 Identities=24% Similarity=0.359 Sum_probs=79.2
Q ss_pred EEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccCh
Q 015306 127 LDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFE 205 (409)
Q Consensus 127 LDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~ 205 (409)
||+|||+|..+..+++.+..+|+++|+++ +++.++++.... .+.++.+|++++++++++||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec---
Confidence 89999999999999999777999999999 999999987653 3669999999999999999999997654433
Q ss_pred hHHHHHHHHHHhcccCCeEEEc
Q 015306 206 NMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 206 ~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7888999999999999999873
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=128.68 Aligned_cols=104 Identities=32% Similarity=0.406 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCCCChHHHHHH-Hc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCA-KA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la-~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs 195 (409)
.++.+|||+|||+|.++..++ +. +..+++|+|+|+ +++.|++++...++. +++++++|+.+++ ++ ++||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence 467899999999999999999 43 456999999999 999999999999997 6999999999976 55 89999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..+ +.+......+++.+.++|++||.++...
T Consensus 80 ~~~---l~~~~~~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 80 NGV---LHHFPDPEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp EST---GGGTSHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCc---hhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 755 3455677889999999999999998543
|
... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=131.64 Aligned_cols=100 Identities=25% Similarity=0.293 Sum_probs=87.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||+|||+|.+++.+++ .+..+|+++|+++ +++.|+++++.+++++ ++++++|+.++.. .++||+|++..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-CCCccEEEEcc
Confidence 34589999999999999999987 5567999999999 9999999999999876 9999999999876 57999999864
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+ ..++.++..+.++|||||++++.
T Consensus 121 ~-------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 121 V-------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred c-------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 2 35678899999999999998843
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=139.26 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=92.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHH--cCCCCcEEEEEccccccc
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEA--NGFSNVITVLKGKIEEIE 184 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~--~~~~~~i~~~~~d~~~~~ 184 (409)
+.+.+.+.....++.+|||||||+|.++..+++. | ..+|+|+|+|+ |++.|+++... .....+++++++|+++++
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 4444444445678899999999999999999884 4 35999999999 99999877542 222346999999999999
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++++||+|++... +++..++..++.++.++|||||.++..
T Consensus 141 ~~~~sfD~V~~~~~---l~~~~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 141 FDDCYFDAITMGYG---LRNVVDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred CCCCCEeEEEEecc---cccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 98889999998543 455567889999999999999998754
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-15 Score=144.04 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++....++.++++++.+|+.++++++++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~- 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES- 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc-
Confidence 57789999999999999999995345999999999 9999999999988888899999999999888899999999543
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+..+...++.++.++|||||.++..
T Consensus 196 --~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 196 --GEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred --hhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 344456788999999999999998854
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-15 Score=132.13 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.++++....++.+ ++++..|+.+++++ ++||+|++..+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~fD~I~~~~~ 104 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFD-GEYDFILSTVV 104 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcC-CCcCEEEEecc
Confidence 45678999999999999999999876 999999999 9999999999888854 89999999887765 68999999865
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+++ .......++..+.++|+|||.++
T Consensus 105 ~~~~-~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 105 LMFL-EAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred hhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 4433 34567899999999999999865
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-15 Score=140.97 Aligned_cols=112 Identities=27% Similarity=0.374 Sum_probs=88.2
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
+.++...++|.+. ..++++|||+|||||+|++.+++.|+++|+|+|+++ +++.|++|+..|++.+++.+. ...+
T Consensus 146 ~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~- 220 (295)
T PF06325_consen 146 PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED- 220 (295)
T ss_dssp HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC-
T ss_pred HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc-
Confidence 4466667777754 578899999999999999999999999999999999 999999999999999877663 2222
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
...++||+|++|.+. ..+..++..+.++|+|||.+|.+
T Consensus 221 -~~~~~~dlvvANI~~------~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 221 -LVEGKFDLVVANILA------DVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp -TCCS-EEEEEEES-H------HHHHHHHHHCHHHEEEEEEEEEE
T ss_pred -cccccCCEEEECCCH------HHHHHHHHHHHHhhCCCCEEEEc
Confidence 224899999999753 34556778888999999999943
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=136.10 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=89.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
...+.+.+...+.+|.+|||||||.|.+++.+++. |+ +|+||.+|+ ..+.+++.+...|+.+++++...|..+++
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--
Confidence 34455666678899999999999999999999995 66 999999999 99999999999999999999999998865
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+||.|||-.+..++. ....+.+++.+.++|||||+++.+
T Consensus 126 -~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 -GKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp --S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred -CCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 4899999976544442 357789999999999999999854
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.8e-15 Score=124.38 Aligned_cols=136 Identities=26% Similarity=0.405 Sum_probs=117.8
Q ss_pred hhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 015306 95 GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (409)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (409)
.||.++|.|..|...|..+|.... ...+.|+|+|+|.++..+|++ +.+|+|+|.+| ..+.|.+++.-+|.. ++
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va----~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-n~ 82 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVA----EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-NW 82 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHh----hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-ce
Confidence 578899999999999999998643 368999999999999999998 88999999999 999999999888874 59
Q ss_pred EEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccc
Q 015306 174 TVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239 (409)
Q Consensus 174 ~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~ 239 (409)
+++.+|+.+..+ +.+|+|+|++++..+..+... .++.++..+|+.++.+||+....-+.|+..
T Consensus 83 evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~qV-pV~n~vleFLr~d~tiiPq~v~~~a~pv~~ 145 (252)
T COG4076 83 EVVVGDARDYDF--ENADVVICEMLDTALIEEKQV-PVINAVLEFLRYDPTIIPQEVRIGANPVRR 145 (252)
T ss_pred EEEecccccccc--cccceeHHHHhhHHhhccccc-HHHHHHHHHhhcCCccccHHHhhccCcccc
Confidence 999999999988 689999999988888777766 456666679999999999987766666653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=133.78 Aligned_cols=115 Identities=21% Similarity=0.248 Sum_probs=95.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
.+++.+.+.....++.+|||+|||+|.++..+++. + ..+|+|+|+++ +++.|++++...++ ++++++.+|+.++++
T Consensus 32 ~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPF 110 (231)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCC
Confidence 44455555566678899999999999999999984 3 46999999999 99999999988777 459999999999887
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.++||+|++... +.+......+++++.++|+|||.++.
T Consensus 111 ~~~~fD~V~~~~~---l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 111 DDNSFDYVTIGFG---LRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred CCCCccEEEEecc---cccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 7789999998543 44445677899999999999999874
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-15 Score=132.22 Aligned_cols=103 Identities=19% Similarity=0.178 Sum_probs=85.8
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
...++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.+++++..+++. +.+...|+...+++ ++||+|++..
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD~I~~~~ 102 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYDFIFSTV 102 (195)
T ss_pred ccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCCEEEEec
Confidence 345567999999999999999999875 999999999 999999998888874 78888888766655 6899999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+.+++ +......+++.+.++|||||+++
T Consensus 103 ~~~~~-~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 103 VFMFL-QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ccccC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 54433 33567889999999999999855
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=127.35 Aligned_cols=105 Identities=24% Similarity=0.340 Sum_probs=86.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
....++.++||||||.|..++++|+.|. .|+|+|.|+ .++.+++.+...+++ |+....|+.+..++ +.||+|++.
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~st 101 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIVST 101 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEEEE
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEEEE
Confidence 3345678999999999999999999998 899999999 999999999998886 99999999998886 789999997
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+..++. ....+.+++.+...++|||+++.
T Consensus 102 ~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 102 VVFMFLQ-RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp SSGGGS--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEeccCC-HHHHHHHHHHHHhhcCCcEEEEE
Confidence 6655554 45778999999999999999774
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-15 Score=137.72 Aligned_cols=115 Identities=24% Similarity=0.308 Sum_probs=90.2
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
+.+..-.+++.+. ..++++|||+|||+|.|++.+++.|+++|+|+|+++ +++.|++|+..|++...+.....+....
T Consensus 147 pTT~lcL~~Le~~--~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKL--LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHh--hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 3455566666644 459999999999999999999999999999999999 9999999999999875333333333333
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.. .++||+||+|.+. ..+..+...+.++|||||++|.+
T Consensus 225 ~~-~~~~DvIVANILA------~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 225 PE-NGPFDVIVANILA------EVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred cc-cCcccEEEehhhH------HHHHHHHHHHHHHcCCCceEEEE
Confidence 22 3699999998752 34557788889999999999954
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.7e-15 Score=137.16 Aligned_cols=103 Identities=27% Similarity=0.271 Sum_probs=88.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.++..+++.|. +|+++|+|+ +++.|+++....++.++++++++|+.++. +..++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4567999999999999999999865 999999999 99999999999888778999999998874 44589999998654
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+...+..++..+.++|||||+++.
T Consensus 122 ---l~~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 122 ---LEWVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred ---HHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 33335667889999999999999863
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=133.61 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=100.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
.-.+.+.+...+.+|.+|||||||.|.+++.+|+.-..+|+|+++|+ +.+.+++.+...|+.++++++..|..++.
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence 34456666788999999999999999999999995345999999999 99999999999999988999999999876
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++||-|||-.|..++.. ...+.++..+.++|+|||.++.+.
T Consensus 136 e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 136 EPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred cccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEE
Confidence 55999999766444433 457899999999999999988543
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=126.66 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.+++.++.. +..+|+|+|.|+ +++.++++++.+++.+ ++++++|+.++.. .++||+|+++.+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~-~~~fD~I~s~~~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQH-EEQFDVITSRAL 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccc-cCCccEEEehhh
Confidence 35889999999999999999875 356899999999 9999999999988864 9999999998743 479999998642
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..++.+++.+.++|+|||.++..
T Consensus 119 -------~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 119 -------ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -------hCHHHHHHHHHHhcCCCCEEEEE
Confidence 24556788889999999998843
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-14 Score=122.83 Aligned_cols=114 Identities=27% Similarity=0.327 Sum_probs=89.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCC-EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA-HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~-~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (409)
+..+.+.+... ++.+|||+|||+|.+++.+++.+.. +|+++|+++ +++.+++++..+++.+ ++++..|..+..
T Consensus 20 t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~ 94 (170)
T PF05175_consen 20 TRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL 94 (170)
T ss_dssp HHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC
T ss_pred HHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc
Confidence 33455555432 7789999999999999999996544 899999999 9999999999999987 999999997754
Q ss_pred CCCCceeEEEEecccccccC--hhHHHHHHHHHHhcccCCeEEE
Q 015306 185 LPVTKVDIIISEWMGYFLLF--ENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~li 226 (409)
. .++||+|+++++.+.... ......++....++|||||.++
T Consensus 95 ~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 95 P-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp C-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred c-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 3 589999999986322211 1246888999999999999986
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-14 Score=126.11 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=99.1
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCC------CEEEEEecHH-HHHHHHHHHHHcCCCCc--EEEEEcc
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGA------AHVYAVECSQ-MANMAKQIVEANGFSNV--ITVLKGK 179 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~------~~V~~vD~s~-~~~~a~~~~~~~~~~~~--i~~~~~d 179 (409)
|.+.....+...++.+|||++||||-++..+.+ .+. .+|+.+|+|+ |+..++++..+.++... +.|+.+|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 455555556677889999999999999999988 344 7999999999 99999999988787654 9999999
Q ss_pred cccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 180 ~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++++++++.+||..++ .+.+.+-.++++.+++++|+|||||++.
T Consensus 168 AE~LpFdd~s~D~yTi---afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 168 AEDLPFDDDSFDAYTI---AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred cccCCCCCCcceeEEE---ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 9999999999999996 5667777889999999999999999876
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-14 Score=136.15 Aligned_cols=108 Identities=23% Similarity=0.214 Sum_probs=88.2
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
.....++++|||||||+|.++..+++.|+..|+|+|+|+ ++..++......+...++.++.++++++++ .++||+|+|
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s 195 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFS 195 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEE
Confidence 344467899999999999999999999888899999999 887655443333333469999999999987 589999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+ ++|..++..+++.+++.|+|||.++..
T Consensus 196 ~~v---l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 196 MGV---LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CCh---hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 544 445567788999999999999999865
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=116.60 Aligned_cols=105 Identities=25% Similarity=0.356 Sum_probs=86.8
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEeccc
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMG 199 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~~~ 199 (409)
|.+|||+|||+|.+++.+++.+..+++|+|+++ .++.|+.++..+++.++++++++|+.+.. ++.++||+|++++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 568999999999999999998767999999999 99999999999999888999999999986 667999999999743
Q ss_pred ccccC-----hhHHHHHHHHHHhcccCCeEEEc
Q 015306 200 YFLLF-----ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 200 ~~l~~-----~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..... ......+++.+.++|||||.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 21111 12346889999999999999873
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-14 Score=133.62 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=87.9
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
+.......++++|||||||+|.++..++..|+..|+|+|+|+ |+..++......+...++.+..+++++++.. .+||+
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~ 191 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDT 191 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCE
Confidence 333345677899999999999999999998888999999999 9876544332222234688999999988765 68999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
|+|..+ +.|-..+..++.++++.|||||.++...
T Consensus 192 V~s~gv---L~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 192 VFSMGV---LYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEcch---hhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 999655 4444677889999999999999998643
|
Known examples to date are restricted to the proteobacteria. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=128.68 Aligned_cols=108 Identities=30% Similarity=0.360 Sum_probs=91.2
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCceeEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~DvV 193 (409)
.......+|||+|||+|.+++.+|++ ...++++||+++ +++.|+++++.|+|.++|+++++|+.++.. ...+||+|
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEE
Confidence 33445789999999999999999996 657999999999 999999999999999999999999999863 34579999
Q ss_pred EEecccccccChh----------------HHHHHHHHHHhcccCCeEEE
Q 015306 194 ISEWMGYFLLFEN----------------MLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 194 vs~~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~li 226 (409)
+|+|. |+-.+.. .++.+++...++|||||.+.
T Consensus 120 i~NPP-yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 120 ICNPP-YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred EeCCC-CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 99985 3332221 35788999999999999976
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-14 Score=131.45 Aligned_cols=111 Identities=26% Similarity=0.284 Sum_probs=89.0
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
.....+.++.+|||||||+|..+..+++....+|+|+|+|+ +++.|+++... .+++.++.+|+.+.++++++||+|
T Consensus 45 l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 45 LSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred HHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEE
Confidence 33456788899999999999999999874344999999999 99999987653 256999999999888877899999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++.....++ ...+...+++.+.++|||||.++...
T Consensus 122 ~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 122 YSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 985322222 12367899999999999999998643
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-14 Score=113.05 Aligned_cols=95 Identities=23% Similarity=0.373 Sum_probs=78.2
Q ss_pred EEEEcCCCChHHHHHHHc---C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc-c
Q 015306 126 VLDVGAGTGILSLFCAKA---G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM-G 199 (409)
Q Consensus 126 VLDlGcG~G~l~~~la~~---g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~-~ 199 (409)
|||+|||+|..+..+++. | ..+++|+|+|+ +++.+++.....+. +++++++|+.+++...++||+|++... .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999986 3 26999999999 99999999988766 489999999998877789999999432 3
Q ss_pred ccccChhHHHHHHHHHHhcccCCe
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDG 223 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG 223 (409)
.+ ........+++.+.++|+|||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 33 566778899999999999998
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-14 Score=130.27 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=89.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
..++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+..++++++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 357789999999999999888872 456999999999 9999999999888877899999999987654 5999998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
....+++. ......+++.+.+.|||||.++...
T Consensus 132 ~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLE-PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 76544443 3456789999999999999998653
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=129.53 Aligned_cols=112 Identities=25% Similarity=0.324 Sum_probs=89.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
+....+.+... ..++.+|||+|||+|.+++.+++.|+.+|+|+|+++ +++.|++++..+++.+++.+...+... .
T Consensus 146 t~l~l~~l~~~--~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~ 221 (288)
T TIGR00406 146 TSLCLEWLEDL--DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--P 221 (288)
T ss_pred HHHHHHHHHhh--cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--c
Confidence 33344444432 357899999999999999999999888999999999 999999999999988778888776432 2
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..++||+|+++.+. ..+..++..+.++|||||.++.+
T Consensus 222 ~~~~fDlVvan~~~------~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 222 IEGKADVIVANILA------EVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred cCCCceEEEEecCH------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 34789999997642 34567888899999999999854
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.4e-14 Score=121.17 Aligned_cols=122 Identities=20% Similarity=0.238 Sum_probs=90.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
+....-.++||+|||.|.++..||.+ ..+++++|+|+ +++.|++++.. . .+|++++.++.+.. |.++||+||..
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~-~~V~~~~~dvp~~~-P~~~FDLIV~S 113 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--L-PHVEWIQADVPEFW-PEGRFDLIVLS 113 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--C-CCeEEEECcCCCCC-CCCCeeEEEEe
Confidence 33344468999999999999999998 56999999999 99999999864 3 35999999998875 45999999998
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccchhhhccccccccc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGF 256 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 256 (409)
-++|++....++..++..+...|+|||.+|..+. .......|.+..|-
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~------------rd~~c~~wgh~~ga 161 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA------------RDANCRRWGHAAGA 161 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-------------HHHHHHTT-S--H
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe------------cCCcccccCcccch
Confidence 8899998777889999999999999999996542 23345558877664
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.9e-14 Score=129.73 Aligned_cols=107 Identities=25% Similarity=0.274 Sum_probs=86.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.+.+.....++.+|||+|||+|.++..+++.| .+|+++|+|+ +++.|+++.. .+.++.+|++++++++++|
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcE
Confidence 333333444467899999999999999998876 4999999999 9999987642 2568899999988887899
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|+++.. +.+..++..++.++.++|+|||.++..
T Consensus 105 D~V~s~~~---l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 105 DLAWSNLA---VQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred EEEEECch---hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 99999754 444457789999999999999999854
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-13 Score=111.04 Aligned_cols=104 Identities=23% Similarity=0.307 Sum_probs=84.6
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~DvVv 194 (409)
....++.+|||+|||+|.++..+++. +..+|+++|+++ +++.+++++...++. +++++.+|+... ....++||+|+
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEE
Confidence 44566789999999999999999985 557999999999 999999999888875 489999987653 22236899999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+... ......+++.+.++|+|||.++..
T Consensus 94 ~~~~------~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 94 IGGS------GGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ECCc------chhHHHHHHHHHHHcCCCCEEEEE
Confidence 8532 134568899999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=128.93 Aligned_cols=106 Identities=24% Similarity=0.315 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHH-cCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAK-AGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~-~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
.+.++.+|||||||+|..+..+++ .|. .+|+++|+++ +++.|+++....++. +++++.+|++++++++++||+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEE
Confidence 456889999999999998888777 353 4899999999 999999999888875 699999999998887789999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+. .+......+++++.++|||||+++..
T Consensus 153 ~~v~---~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 153 NCVI---NLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred cCcc---cCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 7653 33356678899999999999999864
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=130.26 Aligned_cols=101 Identities=25% Similarity=0.281 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||+|||+|..+..+++.|. +|+|+|.|+ +++.+++++..+++ ++++...|+....++ ++||+|++..+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~-~~fD~I~~~~vl 194 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQ-EEYDFILSTVVL 194 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccccc-CCccEEEEcchh
Confidence 3456999999999999999999875 999999999 99999999998887 488999998876664 899999998655
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++ .......+++.+.++|+|||+++
T Consensus 195 ~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 195 MFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 444 34567899999999999999965
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=127.42 Aligned_cols=146 Identities=23% Similarity=0.222 Sum_probs=109.6
Q ss_pred CCCcccCCCCCCCccccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEE
Q 015306 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHV 148 (409)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V 148 (409)
++++++..+++..+ +.||+.+.....+..+.. .....+.......++.+|||||||+|.++..+++.+. +|
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v 73 (233)
T PRK05134 3 NVDPAEIAKFSALA--ARWWDPNGEFKPLHRINP------LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DV 73 (233)
T ss_pred cccHHHHHHHHHHH--HHHhccCCCcHHHHHhhH------HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eE
Confidence 34555555666555 778988887766655432 2223344334456789999999999999999998865 89
Q ss_pred EEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++|+++ +++.+++++...+. .++++..++.+.. ...++||+|++..+ +.+...+..++..+.++|+|||.++
T Consensus 74 ~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 74 TGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM---LEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred EEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEEE
Confidence 9999999 99999998877665 3788888888765 23478999998543 4455667788999999999999988
Q ss_pred cc
Q 015306 227 PD 228 (409)
Q Consensus 227 p~ 228 (409)
..
T Consensus 149 v~ 150 (233)
T PRK05134 149 FS 150 (233)
T ss_pred EE
Confidence 54
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-13 Score=127.80 Aligned_cols=102 Identities=18% Similarity=0.223 Sum_probs=83.1
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
.......++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++. +++++++|++++. +.++||+
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~fD~ 92 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKPDTDV 92 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCCCceE
Confidence 33355567899999999999999999985 345899999999 99998752 3789999998874 4579999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|++..+.+ +..+...++..+.++|||||.++..
T Consensus 93 v~~~~~l~---~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 93 VVSNAALQ---WVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEehhhh---hCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 99976533 3356788999999999999998754
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=125.65 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=86.7
Q ss_pred CEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 124 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
++|||||||+|.++..+++. +..+|+|+|+|+ +++.+++++...++.++++++..|+...+++ ++||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~--- 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV--- 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHH---
Confidence 47999999999999999884 456999999999 9999999999999988999999999776655 68999998544
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+......+++.+.++|||||.++..
T Consensus 77 l~~~~~~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred HHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 333356789999999999999999864
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-13 Score=136.64 Aligned_cols=106 Identities=25% Similarity=0.241 Sum_probs=88.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
....++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.. +...+++++.+|+...++++++||+|+|.
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSR 339 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEEC
Confidence 34567889999999999999999985345999999999 9999998765 44456999999999888877899999996
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+ +.+..++..++.++.++|||||.++..
T Consensus 340 ~~---l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 340 DT---ILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred Cc---ccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 44 444467789999999999999999865
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8e-13 Score=128.76 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCC--CcEEEEEcccccccCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
..+.+|||+|||+|.+++.+++. +..+|+++|.|+ +++.|++++..++.. .+++++..|+.... +..+||+|+|+
T Consensus 227 ~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-~~~~fDlIlsN 305 (378)
T PRK15001 227 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-EPFRFNAVLCN 305 (378)
T ss_pred ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC-CCCCEEEEEEC
Confidence 34569999999999999999985 466999999999 999999999988753 36899999886542 33689999999
Q ss_pred ccccccc--ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++.+... .......++....+.|+|||.++.
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYI 338 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEE
Confidence 7543221 223456788889999999999874
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-13 Score=119.08 Aligned_cols=106 Identities=26% Similarity=0.294 Sum_probs=84.0
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
.+.+.....++.+|||||||+|..+..+++. + ..+|+++|.++ +++.|++++..+++.++++++.+|..+......+
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP 142 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence 3444445678899999999999999999884 3 45999999999 9999999999998877799999999875444578
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
||+|++... +. .+..++.+.|+|||+++.
T Consensus 143 fD~Ii~~~~---~~------~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 143 FDAIIVTAA---AS------TIPSALVRQLKDGGVLVI 171 (205)
T ss_pred ccEEEEccC---cc------hhhHHHHHhcCcCcEEEE
Confidence 999998643 11 222456788999999863
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-13 Score=125.57 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=85.3
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
.+.......++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++. .++.++.+|+.++.. .++|
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~-~~~f 94 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP-PQAL 94 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC-CCCc
Confidence 3344455677899999999999999999984 456999999999 999998764 248899999987754 3799
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|+++.+.+ +..+...++..+.++|||||.++..
T Consensus 95 D~v~~~~~l~---~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 95 DLIFANASLQ---WLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred cEEEEccChh---hCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999976533 3356678999999999999998864
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.5e-13 Score=123.44 Aligned_cols=106 Identities=19% Similarity=0.259 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
.++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+...+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 47789999999999999999884 356899999999 9999999988776666799999999988764 58999986
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
...+++. ......+++.+.+.|||||.++...
T Consensus 130 ~~l~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cchhhCC-HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 5444332 3456789999999999999998654
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.3e-13 Score=125.03 Aligned_cols=106 Identities=26% Similarity=0.417 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++++..+++.++++++++|+.+. ++.++||+|++++.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCC
Confidence 34579999999999999999985 456999999999 9999999999999887899999998653 34468999999863
Q ss_pred cccc-----------cCh------------hHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFL-----------LFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l-----------~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|.- .++ .....++..+.++|+|||+++..
T Consensus 199 -y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 199 -YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred -CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 221 111 12357788889999999998854
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.9e-13 Score=119.93 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc-cccc--CCCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~DvVvs~ 196 (409)
++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++. +++++++|+ +.++ +++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6679999999999999999884 456899999999 999999999988874 599999999 7665 556889999986
Q ss_pred ccccccc--C-h--hHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLL--F-E--NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~--~-~--~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
....... + . ...+.+++.+.++|||||.++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 4321111 1 0 12467899999999999998853
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.2e-13 Score=123.02 Aligned_cols=106 Identities=28% Similarity=0.404 Sum_probs=83.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
+....+.+... ..++.+|||+|||+|.+++.+++.|+.+|+|+|+|+ +++.|++++..+++.+.+.+..++
T Consensus 106 t~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~------ 177 (250)
T PRK00517 106 TRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD------ 177 (250)
T ss_pred HHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC------
Confidence 33444455432 457899999999999999999888887899999999 999999999999885555544332
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+||+|+++... ..+..++..+.++|||||.++.+
T Consensus 178 --~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 178 --LKADVIVANILA------NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred --CCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 279999997531 34567788899999999999854
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=119.03 Aligned_cols=105 Identities=26% Similarity=0.285 Sum_probs=85.3
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
...++.+|||+|||+|.++..+++.+..+|+++|+++ +++.+++++..+++ +++++.+|+.+. ++.++||+|++++
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~np 109 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSNP 109 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEECC
Confidence 3567789999999999999999998777999999999 99999999988876 388999998764 3457899999986
Q ss_pred ccccccCh-------------------hHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFE-------------------NMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~-------------------~~~~~~l~~~~~~LkpgG~lip 227 (409)
. |....+ ..+..++..+.++|||||+++.
T Consensus 110 P-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 110 P-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred C-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3 322211 1256678888999999999884
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=119.65 Aligned_cols=116 Identities=21% Similarity=0.257 Sum_probs=93.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
.+.+.+.......++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.++++.. ....+++++.+|+...++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCC
Confidence 34444555566788899999999999999999984 356999999999 9999988733 233569999999998887
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.++||+|++..+ +.+..++..+++.+.++|||||.++...
T Consensus 84 ~~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 84 PDGSFDAVRSDRV---LQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCCceEEEEech---hhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 7789999998654 4444567889999999999999988654
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=116.60 Aligned_cols=106 Identities=26% Similarity=0.338 Sum_probs=87.1
Q ss_pred hccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCcee
Q 015306 116 QNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVD 191 (409)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D 191 (409)
......++.+|||+|||+|.+++.+++. + ..+|+++|.++ +++.|++++..+++.++++++.+|+.+.. ...++||
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 3456788999999999999999999873 3 46999999999 99999999999986667999999997642 2236899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.|++.. +...+..+++.+.++|+|||+++.
T Consensus 114 ~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 114 RIFIGG------GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EEEECC------CcccHHHHHHHHHHHcCCCcEEEE
Confidence 999842 124567889999999999999884
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-12 Score=114.35 Aligned_cols=101 Identities=27% Similarity=0.276 Sum_probs=82.9
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
....++.+|||||||+|.+++.+++. +..+|+++|+++ +++.|++++..+++. +++++.+|+.. .++ ++||+|++
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~-~~~D~v~~ 103 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELP-GKADAIFI 103 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcC-cCCCEEEE
Confidence 44568889999999999999999985 456999999999 999999999988875 59999998753 333 68999998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
... . ..+..++..+.+.|+|||+++.
T Consensus 104 ~~~---~---~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 104 GGS---G---GNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred CCC---c---cCHHHHHHHHHHhcCCCeEEEE
Confidence 532 1 2356788889999999999885
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=124.89 Aligned_cols=104 Identities=26% Similarity=0.454 Sum_probs=84.3
Q ss_pred CCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 123 DKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
+.+|||+|||+|.+++.+++. +..+|+++|+|+ +++.|++++..+++.++++++++|+.+. ++.++||+|++++. |
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPP-y 211 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPP-Y 211 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCC-C
Confidence 368999999999999999984 466999999999 9999999999999887899999998653 33468999999863 2
Q ss_pred cc-----------cCh------------hHHHHHHHHHHhcccCCeEEEcc
Q 015306 201 FL-----------LFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 201 ~l-----------~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.- .++ .....++..+.++|+|||.++..
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 111 12357788889999999998853
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=119.77 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=90.6
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+|||+|||+|.++..+++.+ ..+|+++|+++ +++.+++++..+++..+++++.+|+.+.+++.++||+|+
T Consensus 47 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 47 LGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred hCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEE
Confidence 334577899999999999999999965 47999999999 999999998877666779999999998877668899999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+... +.+...+..++..+.++|+|||.++.
T Consensus 127 ~~~~---l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 127 IAFG---LRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred Eecc---cccCCCHHHHHHHHHHhccCCcEEEE
Confidence 8533 44556778899999999999999874
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=125.85 Aligned_cols=100 Identities=22% Similarity=0.200 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.++.+|||||||+|.++..+++ .+..+|+++|.|+ |++.|+++... .+++++.+|++++++++++||+|++...
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 4678999999999999998887 4556999999999 99999987642 3488999999998887789999998644
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+..+...+++++.++|||||.++.
T Consensus 188 ---L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 188 ---IEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ---hhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 33345567889999999999999864
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=115.23 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=83.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||+|||+|.++..+++.+. +|+++|+++ +++.+++++..++. +++++.+|+.+.. .++||+|++++.
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p 91 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPP 91 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCC
Confidence 34667899999999999999999876 999999999 99999999998876 3899999987653 368999999864
Q ss_pred cccccC------------------hhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLF------------------ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~------------------~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+.... ......++..+.++|||||.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 322211 11256788999999999999874
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=132.76 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=87.1
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIII 194 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVv 194 (409)
...++.+|||||||+|.++..+++ .+..+|+|+|+|+ |++.|+++....+ .++.++++|+.+++ +++++||+|+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEE
Confidence 345788999999999999888887 5567999999999 9999998876554 34889999998876 6678999999
Q ss_pred Eeccccccc----------ChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLL----------FENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~----------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++.+.+.+. ....+..+++++.++|||||.++..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 875433221 1246778999999999999999864
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.5e-13 Score=115.20 Aligned_cols=94 Identities=26% Similarity=0.250 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||||||+|.++..+++.|. +|+|+|+++ +++. ..+.....+......+.++||+|+|..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 57889999999999999999988888 999999999 8877 1133333333344455689999999755
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+..++..+++.+.++|||||.++..
T Consensus 88 ---l~~~~d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 88 ---LEHLPDPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp ---GGGSSHHHHHHHHHHHCEEEEEEEEEE
T ss_pred ---HhhcccHHHHHHHHHHhcCCCCEEEEE
Confidence 445567899999999999999998854
|
... |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=118.25 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=82.4
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.+.....++.+|||||||+|.++..+++.. ..+|+++|.++ +++.|++++..+++. +++++.+|..+......+|
T Consensus 69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~~~~~f 147 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWEPLAPY 147 (215)
T ss_pred HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCcccCCC
Confidence 3333456789999999999999999999853 34799999999 999999999999984 5999999998764444689
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|++.... ..+...+.+.|+|||+++.
T Consensus 148 D~Ii~~~~~---------~~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 148 DRIYVTAAG---------PKIPEALIDQLKEGGILVM 175 (215)
T ss_pred CEEEEcCCc---------ccccHHHHHhcCcCcEEEE
Confidence 999985421 1223456688999999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=117.15 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=82.6
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.......++.+|||||||+|.++..+++. + ..+|+++|+++ +++.|++++...++. +++++.+|......+.++|
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCcCCCc
Confidence 333455678999999999999999999885 3 35999999999 999999999988874 5999999998765555789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|++... . ..+...+.+.|||||+++.
T Consensus 147 D~I~~~~~---~------~~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 147 DRIYVTAA---G------PDIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred CEEEECCC---c------ccchHHHHHhhCCCcEEEE
Confidence 99998532 2 1223455678999999763
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=117.19 Aligned_cols=112 Identities=23% Similarity=0.257 Sum_probs=90.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
+...+.......++.+|||+|||+|.++..+++.+. .+++++|+++ +++.++++.. ...++.++.+|+.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE 103 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC
Confidence 333344334445789999999999999999998654 5999999999 9999988775 335689999999998776
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.++||+|++... +.+...+..+++.+.++|+|||+++.
T Consensus 104 ~~~~D~i~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 104 DNSFDAVTIAFG---LRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred CCcEEEEEEeee---eCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 678999998543 45556788999999999999999884
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-12 Score=110.05 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=91.1
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
....+...++.+++|||||||.+++.++.. +..+|||+|.++ +++..++|.++.+.+ +++++.+++-+.-....++|
T Consensus 26 ~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 26 TLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchHhhcCCCCCC
Confidence 344567889999999999999999999974 477999999999 999999999999975 59999999988644434799
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
.|+... ...++.+++.+...|||||+++.+.
T Consensus 105 aiFIGG-------g~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 105 AIFIGG-------GGNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred EEEECC-------CCCHHHHHHHHHHHcCcCCeEEEEe
Confidence 999632 2577899999999999999999543
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=124.90 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=93.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
...++.......++.+|||+|||+|.+++.++..|. +|+|+|+++ |+..|++++...++.+ +.++.+|+.+++++.+
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccC
Confidence 344444445567889999999999999998888755 899999999 9999999999999877 8999999999887768
Q ss_pred ceeEEEEeccccccc-------ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLL-------FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+||+|+++++ |... .......++..+.++|||||+++.
T Consensus 248 ~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 248 SVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred CCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 9999999864 3221 113357889999999999998773
|
This family is found exclusively in the Archaea. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-14 Score=111.54 Aligned_cols=95 Identities=24% Similarity=0.298 Sum_probs=61.5
Q ss_pred EEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-C-CCCceeEEEEecccccc
Q 015306 127 LDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-L-PVTKVDIIISEWMGYFL 202 (409)
Q Consensus 127 LDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~-~~~~~DvVvs~~~~~~l 202 (409)
||||||+|.++..+++. +..+++++|+|+ |++.|++++...+... ...+..+..+.. . ..++||+|++..+.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999885 566999999999 9999998888876533 334443333332 1 12599999997654444
Q ss_pred cChhHHHHHHHHHHhcccCCeEE
Q 015306 203 LFENMLNTVLYARDKWLVDDGIV 225 (409)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~l 225 (409)
.++..+++.+.++|||||++
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 78889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-12 Score=116.22 Aligned_cols=137 Identities=23% Similarity=0.264 Sum_probs=107.0
Q ss_pred cccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHH
Q 015306 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQI 163 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~ 163 (409)
..||+.++.+..+..+ +..+.+...+.+........+.+|||+|||+|.++..+++.+. +|+++|+++ +++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~ 86 (224)
T TIGR01983 10 HEWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLH 86 (224)
T ss_pred HHhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHH
Confidence 5688888877766655 5666666666665432234578999999999999999988765 799999999 99999999
Q ss_pred HHHcCCCCcEEEEEcccccccCC-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 164 VEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 164 ~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+...+.. ++++...|+.+.... .++||+|++..+ +.+...+..++..+.++|+|||.++..
T Consensus 87 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 87 AKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred HHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 8877653 489999999887644 378999998543 444567788999999999999998753
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=118.55 Aligned_cols=90 Identities=23% Similarity=0.254 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
++.+|||||||||.++..+++....+|+|+|+|+ |++.|++. ..++++|++++++++++||+|++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~--- 118 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSF--- 118 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecC---
Confidence 4789999999999999999986335999999999 99998763 2357899999999889999999954
Q ss_pred cccChhHHHHHHHHHHhcccCCe
Q 015306 201 FLLFENMLNTVLYARDKWLVDDG 223 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG 223 (409)
.+++..+++.+++++.|+|||.+
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcCce
Confidence 35566788899999999999954
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-12 Score=120.89 Aligned_cols=126 Identities=24% Similarity=0.289 Sum_probs=93.9
Q ss_pred hcChHhHHHHHHHHHhcc-CCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE
Q 015306 101 LKDVVRTKSYQNVIYQNK-FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (409)
Q Consensus 101 l~d~~r~~~~~~~l~~~~-~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (409)
+-++..++.+.+.+.... ...++.+|||+|||+|.+++.++.. +..+|+|+|+|+ +++.|++++..+++.+++++++
T Consensus 92 liPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~ 171 (284)
T TIGR00536 92 LIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQ 171 (284)
T ss_pred cCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 334555666665554322 1223369999999999999999985 346999999999 9999999999999877799999
Q ss_pred cccccccCCCCceeEEEEecccccc-----------cChh------------HHHHHHHHHHhcccCCeEEEcc
Q 015306 178 GKIEEIELPVTKVDIIISEWMGYFL-----------LFEN------------MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 178 ~d~~~~~~~~~~~DvVvs~~~~~~l-----------~~~~------------~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|+.+. ++..+||+|++++. |.- .+++ ....++..+.++|+|||+++..
T Consensus 172 ~d~~~~-~~~~~fDlIvsNPP-yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 172 SNLFEP-LAGQKIDIIVSNPP-YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred Cchhcc-CcCCCccEEEECCC-CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 998763 34348999999853 211 1111 3567888889999999998854
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=126.78 Aligned_cols=110 Identities=22% Similarity=0.233 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEccccccc--C--CCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE--L--PVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~--~~~~~DvVv 194 (409)
.++++|||+|||+|.+++.++..|+.+|+++|.|+ +++.|++++..|++. ++++++++|+.++. + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 46889999999999999988887888999999999 999999999999986 47999999998763 1 236899999
Q ss_pred EecccccccChh-------HHHHHHHHHHhcccCCeEEEccCCc
Q 015306 195 SEWMGYFLLFEN-------MLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 195 s~~~~~~l~~~~-------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
++++ ++..... ....++....++|+|||.++..+++
T Consensus 299 lDPP-~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPP-KFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCC-CCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9985 3333221 2345556678999999999865543
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=125.07 Aligned_cols=129 Identities=22% Similarity=0.267 Sum_probs=97.8
Q ss_pred hhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCC
Q 015306 94 FGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSN 171 (409)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~ 171 (409)
+......+-++..++.+.+.+.... .++.+|||+|||+|.+++.+++ .+..+|+|+|+|+ +++.|++++..++.
T Consensus 225 f~V~p~vLIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-- 300 (423)
T PRK14966 225 FAVNPNVLIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-- 300 (423)
T ss_pred EEeCCCccCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--
Confidence 3344445667778888888776543 4567999999999999999887 4567999999999 99999999988775
Q ss_pred cEEEEEcccccccCC-CCceeEEEEecccccccC-----------h------------hHHHHHHHHHHhcccCCeEEEc
Q 015306 172 VITVLKGKIEEIELP-VTKVDIIISEWMGYFLLF-----------E------------NMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 172 ~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~-----------~------------~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++++++|+.+..++ .++||+|+|+++ |.... + .....++..+.+.|+|||.++.
T Consensus 301 rV~fi~gDl~e~~l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 301 RVEFAHGSWFDTDMPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred cEEEEEcchhccccccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 599999999765432 368999999974 32211 1 1234677777889999999774
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-12 Score=112.48 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=84.5
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE-EEEccccccc-CCCCceeEEEEecccc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT-VLKGKIEEIE-LPVTKVDIIISEWMGY 200 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~~DvVvs~~~~~ 200 (409)
..||+||||||..-.+.--.+..+|+++|+++ |-++|.+.+.++...+ ++ |+.++.++++ ++++++|+||+..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d~s~DtVV~Tlv-- 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLADGSYDTVVCTLV-- 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCcccccCCeeeEEEEEE--
Confidence 46899999999776555544566999999999 9999999998886544 55 9999999998 77899999999654
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+....++.+.+++..++|+|||++++
T Consensus 155 -LCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 155 -LCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred -EeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 66667888999999999999999884
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-12 Score=114.70 Aligned_cols=103 Identities=25% Similarity=0.250 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||||||+|.++..+++.+. +|+|+|+|+ ++..|++++...+..+++++.++|+.+++ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 45788999999999999999998755 999999999 99999999988877667999999998765 78999998543
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+++ ....+..++..+.+++++++++..
T Consensus 129 l~~~-~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 129 LIHY-PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHhC-CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3222 234567788888899988877664
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-12 Score=129.88 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=101.3
Q ss_pred hhhhHHhhcChHhHHHHHHHHHhccC------------------------CCCCCEEEEEcCCCChHHHHHHH-cCCCEE
Q 015306 94 FGIHEEMLKDVVRTKSYQNVIYQNKF------------------------LFKDKVVLDVGAGTGILSLFCAK-AGAAHV 148 (409)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~l~~~~~------------------------~~~~~~VLDlGcG~G~l~~~la~-~g~~~V 148 (409)
+......|-+++.++.+.+.+..... ..++.+|||+|||+|.+++.++. .+..+|
T Consensus 86 f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v 165 (506)
T PRK01544 86 FIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANV 165 (506)
T ss_pred EEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeE
Confidence 45556677788888888877654321 11346899999999999998887 466799
Q ss_pred EEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccccc------------Ch----------
Q 015306 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL------------FE---------- 205 (409)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~------------~~---------- 205 (409)
+|+|+|+ +++.|++++..+++.++++++++|+.+. ++.++||+|+|++. |... ++
T Consensus 166 ~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPP-Yi~~~~~~~l~~~v~~~EP~~AL~gg~d 243 (506)
T PRK01544 166 IATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPP-YISHSEKSEMAIETINYEPSIALFAEED 243 (506)
T ss_pred EEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCC-CCCchhhhhcCchhhccCcHHHhcCCcc
Confidence 9999999 9999999999999888899999998653 33468999999863 3221 11
Q ss_pred --hHHHHHHHHHHhcccCCeEEEcc
Q 015306 206 --NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 206 --~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.....++..+.++|+|||.++..
T Consensus 244 Gl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 244 GLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEE
Confidence 12345677888999999998864
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=109.54 Aligned_cols=106 Identities=27% Similarity=0.333 Sum_probs=85.3
Q ss_pred EEEEEcCCCChHHHHHHHcCCCE-EEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc-
Q 015306 125 VVLDVGAGTGILSLFCAKAGAAH-VYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF- 201 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~~~-V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~- 201 (409)
+|||+|||.|.+...|++.|... .+|+|.|+ +++.|+..+++.++++.|+|.+.|+.+..+..++||+|.--.....
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 99999999999999999987544 99999999 9999999999999999999999999987665688999886321111
Q ss_pred -cc---ChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 202 -LL---FENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 202 -l~---~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
|. ..+.+...+..+.++|+|||+++..++
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 11 122334567888899999999986543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-12 Score=118.06 Aligned_cols=108 Identities=20% Similarity=0.147 Sum_probs=83.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
.....|++|||||||.|..+..+++.|++.|+|+|++. .....+......+....+.++..-+++++. .+.||+|+|-
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~M 189 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSM 189 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEe
Confidence 44578999999999999999999999999999999998 554433333333333445555567788776 5899999996
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
.+ +.|...+-..+..++..|+|||.+|..+
T Consensus 190 GV---LYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 190 GV---LYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred ee---hhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 55 4555677788999999999999988543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-12 Score=113.67 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=84.2
Q ss_pred CCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~DvVvs~ 196 (409)
...+|||||||+|.++..+++ .+..+|+|+|+++ +++.|++++...++. +++++++|+.++. ++.+.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 456999999999999999998 4566999999999 999999999988886 5999999998754 445689999987
Q ss_pred ccccccc--C---hhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLL--F---ENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~--~---~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
....... + .-..+.++..+.++|||||.++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 4322111 0 011257889999999999998754
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.8e-12 Score=123.95 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=86.5
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
..+.+.....++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.. ++ .+++...|..++ .++|
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~f 229 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQF 229 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCC
Confidence 34444456778999999999999999999985344999999999 9999999874 33 388888888765 3789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|++..+..++ +...++.+++.+.++|||||.++..
T Consensus 230 D~Ivs~~~~ehv-g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 230 DRIVSVGMFEHV-GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CEEEEeCchhhC-ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999997653333 2345678999999999999998864
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=110.74 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=83.5
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 190 (409)
+.......++.+|||+|||+|.++..+++. +..+|+++|.++ +++.+++++..+++. +++++.+|+.+. ......+
T Consensus 32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCCCC
Confidence 444455678899999999999999999874 456999999999 999999999988885 599999998652 2111346
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|.++... ...+..++..+.++|+|||.++..
T Consensus 111 d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 111 DRVCIEG-------GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred CEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 7776532 134578899999999999998854
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-12 Score=116.71 Aligned_cols=100 Identities=27% Similarity=0.342 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..+.+|||||||+|.++..+++.+ ..+|+++|+++ ++..+++... .++.++.+|+.+.++++++||+|++..+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 345799999999999999999864 45799999999 9998887654 3588999999998877789999999654
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++..++..++..+.++|+|||.++..
T Consensus 108 ---l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 108 ---LQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred ---hhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 444456788999999999999999854
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-12 Score=120.67 Aligned_cols=102 Identities=22% Similarity=0.208 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
...+|||+|||+|.++..+++. +..+|+++|+|+ +++.|++++..+++. .+++..|+... . .++||+|+++++.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~-~~~fDlIvsNPPF 271 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-I-KGRFDMIISNPPF 271 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-c-CCCccEEEECCCc
Confidence 3458999999999999999985 456999999999 999999999999875 56777887653 2 4789999999753
Q ss_pred cccc--ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 200 YFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 200 ~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+... .......++..+.+.|||||.++.
T Consensus 272 H~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 272 HDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 3221 124567889999999999999863
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=111.96 Aligned_cols=102 Identities=19% Similarity=0.088 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC--------------CCcEEEEEcccccccC
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------------SNVITVLKGKIEEIEL 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~~~ 185 (409)
.++.+|||+|||.|..+..+|+.|. +|+|+|+|+ +++.+.+. +++ ..+|+++++|+.++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 4678999999999999999999988 899999999 99976432 222 2358999999998764
Q ss_pred C-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. .++||.|+...+..++ .......++..+.++|||||+++.
T Consensus 109 ~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred ccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2 3679999975433333 456677899999999999998653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=115.50 Aligned_cols=107 Identities=13% Similarity=0.129 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCCChH-HHHHHH--cCCCEEEEEecHH-HHHHHHHHHHH-cCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGIL-SLFCAK--AGAAHVYAVECSQ-MANMAKQIVEA-NGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l-~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
.++++|+|||||.|.+ ++.++. .+..+++++|.++ +++.|++.+.. .++.++++|..+|+.+.....++||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3779999999997744 444443 3466899999999 99999999964 78888999999999886433478999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..+.++ .......+++.+.+.|+|||.++...
T Consensus 202 ~ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 AALVGM--DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred eccccc--ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 732211 12567899999999999999998543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=110.48 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.+++.++..++.+|+++|.++ +++.++++++.+++. +++++++|+.+.. ...++||+|+++++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 46789999999999999977666778999999999 999999999999875 5999999997743 12357999999985
Q ss_pred cccccChhHHHHHHHHHHh--cccCCeEEEccC
Q 015306 199 GYFLLFENMLNTVLYARDK--WLVDDGIVLPDK 229 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~--~LkpgG~lip~~ 229 (409)
| ..+..+.++..+.. +|+|+|+++.+.
T Consensus 131 -y---~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 131 -F---RKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred -C---CCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 2 12344455555543 478888887553
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=8e-12 Score=117.05 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=82.9
Q ss_pred CCCCCEEEEEcCCCCh----HHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHH----cC----------------
Q 015306 120 LFKDKVVLDVGAGTGI----LSLFCAKAG------AAHVYAVECSQ-MANMAKQIVEA----NG---------------- 168 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~----l~~~la~~g------~~~V~~vD~s~-~~~~a~~~~~~----~~---------------- 168 (409)
..++.+|+|+|||+|. +++.+++.+ ..+|+|+|+|+ |++.|++.+.. .+
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999995 677777642 24899999999 99999875310 01
Q ss_pred ------CCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 169 ------FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 169 ------~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.++|+|.+.|+.+.+++.++||+|+|..+..++ .......++..+.+.|+|||+++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 2246899999999987766899999996554433 23456789999999999999998643
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=115.98 Aligned_cols=125 Identities=24% Similarity=0.300 Sum_probs=94.2
Q ss_pred hhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE
Q 015306 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (409)
Q Consensus 100 ~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (409)
.+.++..++.+.+.+.......++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++. .....++.++.
T Consensus 86 ~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~ 164 (275)
T PRK09328 86 VLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQ 164 (275)
T ss_pred ceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEE
Confidence 34455666677776664445567789999999999999999985 467999999999 9999999987 34445699999
Q ss_pred cccccccCCCCceeEEEEecccccccC------------------------hhHHHHHHHHHHhcccCCeEEEc
Q 015306 178 GKIEEIELPVTKVDIIISEWMGYFLLF------------------------ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 178 ~d~~~~~~~~~~~DvVvs~~~~~~l~~------------------------~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+.+.. +.++||+|++++. |.-.. ......++..+.++|+|||.++.
T Consensus 165 ~d~~~~~-~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 165 GDWFEPL-PGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred ccccCcC-CCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 9986532 2478999999863 22110 12235677888899999999885
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-12 Score=133.25 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC-CCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL-PVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~-~~~~~DvVvs~~ 197 (409)
.++++|||+|||+|.+++.+++.|+.+|++||+|+ +++.|++++..|++. ++++++++|+.++.. ..++||+||+++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 35789999999999999999999988999999999 999999999999996 689999999977531 136899999997
Q ss_pred ccccccC---------hhHHHHHHHHHHhcccCCeEEEccC
Q 015306 198 MGYFLLF---------ENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 198 ~~~~l~~---------~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
. ++... ......++..+.++|+|||.++.+.
T Consensus 617 P-~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 617 P-TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred C-CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4 32221 2234677888889999999988643
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=116.03 Aligned_cols=128 Identities=24% Similarity=0.317 Sum_probs=94.1
Q ss_pred hhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 015306 96 IHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (409)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (409)
.....+-++..++.+.+++......... +|||+|||+|.+++.++.. +...|+|+|+|+ +++.|++|+..+++ .++
T Consensus 85 v~~~vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~ 162 (280)
T COG2890 85 VDEGVLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRV 162 (280)
T ss_pred eCCCceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccE
Confidence 3344556677787777775422222222 8999999999999999995 456999999999 99999999999998 557
Q ss_pred EEEEcccccccCCCCceeEEEEecccccccC-----------hh------------HHHHHHHHHHhcccCCeEEEcc
Q 015306 174 TVLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------EN------------MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 174 ~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~-----------~~------------~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.++.+|..+- .. ++||+||||+. |.-.. ++ ....++....+.|+|||.++..
T Consensus 163 ~~~~~dlf~~-~~-~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 163 LVVQSDLFEP-LR-GKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred EEEeeecccc-cC-CceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 7777776543 22 59999999973 43221 11 2357778888999999988753
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=113.36 Aligned_cols=118 Identities=26% Similarity=0.296 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 106 r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
.+..+...+..... ..+.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++..+++. +++++++|+.+.
T Consensus 72 ~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~ 149 (251)
T TIGR03534 72 DTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP 149 (251)
T ss_pred ChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc
Confidence 34444444443332 34569999999999999999984 456999999999 999999999998885 599999999773
Q ss_pred cCCCCceeEEEEecccccccC------------h------------hHHHHHHHHHHhcccCCeEEEc
Q 015306 184 ELPVTKVDIIISEWMGYFLLF------------E------------NMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~------------~------------~~~~~~l~~~~~~LkpgG~lip 227 (409)
++.++||+|+++++ +.... + .....++..+.++|+|||.++.
T Consensus 150 -~~~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 150 -LPGGKFDLIVSNPP-YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred -CcCCceeEEEECCC-CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 44589999999864 22111 0 1124678889999999999875
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=108.07 Aligned_cols=105 Identities=25% Similarity=0.290 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.++..+++.+ .+|+++|.|+ +++.+++++..+++.++ +.++.+|+.+.. ...+||+|++++.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-RGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-cccCceEEEECCC
Confidence 577899999999999999999984 5999999999 99999999998887654 889999987643 3358999999753
Q ss_pred cccc------------------cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFL------------------LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l------------------~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.... .+...+..+++++.++|||||.++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2110 0122356788999999999998774
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=111.02 Aligned_cols=101 Identities=22% Similarity=0.227 Sum_probs=78.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc----cCCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D 191 (409)
..+.++.+|||+|||+|.++..+++. +..+|+|+|.++ |++.+.+++... .++.++.+|+.+. .++ ++||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccCC
Confidence 56788999999999999999999995 445899999999 999887776543 3489999998752 223 5699
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+++.. .......++..+.++|||||.++.
T Consensus 144 ~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 144 VIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 9997532 112234568899999999999885
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=111.38 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=77.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||||||+|.++..+++. +..+++|+|+|+ +++.|+++.. .+.++++|+.+ ++++++||+|++..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEEEECC
Confidence 356789999999999999999885 567999999999 9999987642 36788899888 66778999999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+.+++. ...+..+++++.++++ +.++
T Consensus 114 vL~hl~-p~~~~~~l~el~r~~~--~~v~ 139 (204)
T TIGR03587 114 VLIHIN-PDNLPTAYRELYRCSN--RYIL 139 (204)
T ss_pred hhhhCC-HHHHHHHHHHHHhhcC--cEEE
Confidence 655543 4567788888888873 4444
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=114.09 Aligned_cols=112 Identities=24% Similarity=0.229 Sum_probs=86.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
+.|.+......+.+|||+|||.|.+++.+++ .+..+++-+|.|. +++.|++++..|++.+. .++..|..+-.. ++
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v~--~k 224 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPVE--GK 224 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccccccc--cc
Confidence 3344445555566999999999999999999 4578999999999 99999999999998764 677777655432 49
Q ss_pred eeEEEEecccccccCh--hHHHHHHHHHHhcccCCeEEE
Q 015306 190 VDIIISEWMGYFLLFE--NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~li 226 (409)
||+|+|++..+-.... ....+++....+.|++||.+.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 9999999864422111 112478888999999999864
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=110.02 Aligned_cols=103 Identities=21% Similarity=0.191 Sum_probs=81.2
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
+.......++.+|||+|||+|.++..+++.+ .+|+++|.++ +++.|++++...++.+ ++++.+|..+...+.++||+
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcCCCcCE
Confidence 3334556788999999999999999888874 4899999999 9999999999988865 99999998654333478999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|++... . ..+...+.+.|+|||+++.
T Consensus 148 I~~~~~---~------~~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 148 ILVTAA---A------PEIPRALLEQLKEGGILVA 173 (212)
T ss_pred EEEccC---c------hhhhHHHHHhcCCCcEEEE
Confidence 998532 1 1223456789999999874
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.2e-11 Score=115.85 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=91.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
...+.+.....++.+|||||||+|.++..+++. +..+++++|..++++.+++++...++.++++++.+|+.+.+++ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--E 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC--C
Confidence 344444455677889999999999999999985 5569999998339999999999999989999999999876554 3
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+|+|++..+.+.. .......+++.+.+.|+|||+++...
T Consensus 216 ~D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 216 ADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CCEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7998875432222 23445688999999999999998544
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=124.96 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=84.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc--ccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~DvVv 194 (409)
....++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++.. +...+++++++|+.. ++++.++||+|+
T Consensus 33 l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 33 LPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred cCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCCCCEEEEe
Confidence 444567899999999999999999974 5999999999 998776532 223469999999964 456668999999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++.+.+++.. ..+..++..+.++|||||+++...
T Consensus 109 ~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 109 SNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred hhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9876555532 346789999999999999998654
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-11 Score=103.66 Aligned_cols=77 Identities=29% Similarity=0.371 Sum_probs=69.4
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
......|++|+|+|||||.+++.++-.|+.+|+|+|+++ +++.+++|..+ +..++.|+.+|+.++. .++|.++.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~---~~~dtvim 114 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR---GKFDTVIM 114 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC---CccceEEE
Confidence 456788999999999999999999999999999999999 99999999998 3356999999999886 67999999
Q ss_pred ecc
Q 015306 196 EWM 198 (409)
Q Consensus 196 ~~~ 198 (409)
|+.
T Consensus 115 NPP 117 (198)
T COG2263 115 NPP 117 (198)
T ss_pred CCC
Confidence 963
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=108.56 Aligned_cols=101 Identities=20% Similarity=0.176 Sum_probs=78.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHc----CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA----GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~----g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
.+.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|+++.. ++.++.+|+....+. ++||+||++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~-~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFD-TLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccccc-CCccEEEEC
Confidence 3679999999999999999874 345899999999 9999998753 378999999876654 799999999
Q ss_pred cccccccC---------hhHHHHHHHHHHhcccCCeEEEccC
Q 015306 197 WMGYFLLF---------ENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 197 ~~~~~l~~---------~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+...-+.. ......++....+++++|+.|+|..
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~ 163 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM 163 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence 84321110 1124567888888999999988875
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-11 Score=110.98 Aligned_cols=120 Identities=21% Similarity=0.221 Sum_probs=86.0
Q ss_pred hHhHHHHHHHHHhccC-CCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc
Q 015306 104 VVRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (409)
Q Consensus 104 ~~r~~~~~~~l~~~~~-~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (409)
+..++.+.+.+..... ..++.+|||+|||+|.+++.+++ .+..+|+++|+|+ +++.|++++..++ ++++++|+
T Consensus 67 r~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~ 142 (251)
T TIGR03704 67 RRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDL 142 (251)
T ss_pred CccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence 3345555555543322 22346899999999999999987 4456999999999 9999999998875 47888998
Q ss_pred ccccC--CCCceeEEEEeccccccc------------Ch------------hHHHHHHHHHHhcccCCeEEEcc
Q 015306 181 EEIEL--PVTKVDIIISEWMGYFLL------------FE------------NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 181 ~~~~~--~~~~~DvVvs~~~~~~l~------------~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+... ..++||+|+++++ |... ++ ..+..++....++|+|||+++..
T Consensus 143 ~~~l~~~~~~~fDlVv~NPP-y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAP-YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhhcchhcCCCEeEEEECCC-CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 76421 1257999999974 3211 00 12357788888999999998843
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-11 Score=108.52 Aligned_cols=102 Identities=23% Similarity=0.170 Sum_probs=80.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC--------------CCcEEEEEccccccc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------------SNVITVLKGKIEEIE 184 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~~ 184 (409)
..++.+|||+|||.|..++.+|+.|. +|+|||+|+ +++.+.+ ++++ ..+|++.++|+.++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 34678999999999999999999988 899999999 9987642 2222 256899999999885
Q ss_pred CC-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 185 LP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 185 ~~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.. .+.||+|+...+..++ .......++..+.++|+|||+++
T Consensus 111 ~~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 111 AADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred cccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 43 2589999976543333 45667899999999999998644
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-11 Score=111.90 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=86.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C----CCCce
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 190 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~ 190 (409)
..++++|||||||+|..++.+++. +..+|+++|.++ +++.|++++..+++.++++++.+|+.+.- + +.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 356889999999999988888873 367999999999 99999999999999999999999997752 1 13689
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
|+|+.+.- ......++..+.++|+|||+++....
T Consensus 146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 99998531 24556778888899999999986543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=106.68 Aligned_cols=101 Identities=24% Similarity=0.218 Sum_probs=82.7
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
...+...++.+|||||||+|..+..+++... +|+++|..+ +.+.|++++...|+.| |.++++|...-..+..+||.|
T Consensus 65 ~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 65 LQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred HHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcCEE
Confidence 3345678999999999999999999999733 999999999 9999999999999977 999999998876666899999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+...- . ...++ .+.+.||+||+++
T Consensus 143 ~Vtaa---a--~~vP~----~Ll~QL~~gGrlv 166 (209)
T COG2518 143 IVTAA---A--PEVPE----ALLDQLKPGGRLV 166 (209)
T ss_pred EEeec---c--CCCCH----HHHHhcccCCEEE
Confidence 98532 1 12222 3346789999976
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-11 Score=111.92 Aligned_cols=113 Identities=17% Similarity=0.047 Sum_probs=89.0
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+|||+|||+|..+..+++. + ...|+++|+++ +++.+++++..+++.+ +++++.|+..+....++||+|+
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhhccCCCEEE
Confidence 34578899999999999999998884 2 45899999999 9999999999999864 9999999987654446799999
Q ss_pred Eeccccccc------------Chh-------HHHHHHHHHHhcccCCeEEEccCCc
Q 015306 195 SEWMGYFLL------------FEN-------MLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 195 s~~~~~~l~------------~~~-------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
+++..+... .+. ....++....++|||||+++.++++
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 976433210 111 1245888889999999999966554
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=107.83 Aligned_cols=105 Identities=23% Similarity=0.275 Sum_probs=93.6
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
|.....+.+|.+|||.|.|+|.++..+++ . +..+|+.+|..+ .++.|++|+...++.+++++..+|+.+...+ ..|
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~v 164 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDV 164 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-ccc
Confidence 45557889999999999999999999998 3 457999999999 9999999999999999999999999998877 599
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+.++ +++-.+++.+...|||||.++.
T Consensus 165 Dav~LDm--------p~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 165 DAVFLDL--------PDPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred CEEEEcC--------CChHHHHHHHHHHhCCCcEEEE
Confidence 9999865 4667889999999999999874
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.5e-12 Score=109.31 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 106 r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
|+.-.++.+. ........+|.|||||+|..+..+++ .+...++|+|.|+ |++.|++... +++|..+|+.++
T Consensus 15 RtRPa~dLla-~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w 87 (257)
T COG4106 15 RTRPARDLLA-RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTW 87 (257)
T ss_pred ccCcHHHHHh-hCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC------CCceecccHhhc
Confidence 3434444443 35667778999999999999999999 5778999999999 9999977653 389999999998
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+ ...|+++++.+...+ ++-..++..+...|.|||++-.+
T Consensus 88 ~p~-~~~dllfaNAvlqWl---pdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 88 KPE-QPTDLLFANAVLQWL---PDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred CCC-Cccchhhhhhhhhhc---cccHHHHHHHHHhhCCCceEEEE
Confidence 755 899999998764444 44456777777899999998643
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-11 Score=114.80 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~DvVvs~ 196 (409)
..+..+||||||+|.++..+|+ .+...++|+|+++ ++..|.+++..+++.+ +.++++|+..+ .++++++|.|++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEEEe
Confidence 4567999999999999999998 4567999999999 9999999999999865 99999999765 3667899999986
Q ss_pred cccccccCh-h--HHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFE-N--MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~-~--~~~~~l~~~~~~LkpgG~lip~ 228 (409)
......-.. . ..+.++..+.++|+|||.+...
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 432111000 0 1268899999999999998754
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-11 Score=118.65 Aligned_cols=113 Identities=18% Similarity=0.107 Sum_probs=88.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvV 193 (409)
....++.+|||+|||+|..+..+++.+ ..+|+++|.++ +++.+++++..+|+. ++++++|+.++. ++.++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 445788999999999999999999854 36999999999 999999999998874 789999998754 234689999
Q ss_pred EEecccccc------------cChh-------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 194 ISEWMGYFL------------LFEN-------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 194 vs~~~~~~l------------~~~~-------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
++++..+.. .... ....++..+.++|||||.++.+++++
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 987642211 0111 12467888899999999999766543
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-11 Score=113.22 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=73.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C---CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G---AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g---~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
..+.+|||+|||+|.++..+++. + ...|+|+|+|+ +++.|+++. .++.+..+|+.++++++++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 35578999999999999988874 2 23799999999 999997653 2388999999999888889999998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
... +..+.++.++|||||+++.
T Consensus 158 ~~~----------~~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 158 IYA----------PCKAEELARVVKPGGIVIT 179 (272)
T ss_pred ecC----------CCCHHHHHhhccCCCEEEE
Confidence 431 1234678899999999984
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-11 Score=111.92 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVvs~~ 197 (409)
.++++|||||||+|.++..+++ .+..+|+++|+++ +++.|++++...+..++++++.+|+.+.. ...++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4568999999999999999887 5667999999999 99999999876655567999999987653 2236899999875
Q ss_pred cccc-ccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYF-LLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.... ....-....+++.+.+.|+|||+++.+
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3211 111112368899999999999999853
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.9e-12 Score=111.11 Aligned_cols=143 Identities=19% Similarity=0.196 Sum_probs=97.8
Q ss_pred cccccccCchhhhH-HhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CC--CEEEEEecHH-HHHH
Q 015306 85 DYYFDSYSHFGIHE-EMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA--AHVYAVECSQ-MANM 159 (409)
Q Consensus 85 ~~~~~~~~~~~~~~-~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~--~~V~~vD~s~-~~~~ 159 (409)
..||+.+. ..|. .+++|+.....-...+.......+ .+||+||||.|....++.+. .. -+|+++|.|+ +++.
T Consensus 36 ~k~wD~fy--~~~~~rFfkdR~wL~~Efpel~~~~~~~~-~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~ 112 (264)
T KOG2361|consen 36 SKYWDTFY--KIHENRFFKDRNWLLREFPELLPVDEKSA-ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL 112 (264)
T ss_pred hhhhhhhh--hhccccccchhHHHHHhhHHhhCccccCh-hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence 66888772 3333 245565443322222322222222 28999999999999999984 22 5899999999 9999
Q ss_pred HHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceE
Q 015306 160 AKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (409)
Q Consensus 160 a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (409)
.+++...+. .++.....|+.... ...+++|+|++..+.+.+. ......++..+.++|||||.+++..+..|
T Consensus 113 vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 113 VKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred HHhccccch--hhhcccceeccchhccCCCCcCccceEEEEEEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 988876554 44666666665433 3368999999876655554 44567889999999999999998765544
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-11 Score=118.69 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=90.4
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCce
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~ 190 (409)
....+|.+|||+|||+|..+..+++. + ..+|+|+|+++ +++.+++++...|+.+ |+++++|+.++. ...++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccC
Confidence 44578899999999999999999984 3 45999999999 9999999999999965 999999998875 334689
Q ss_pred eEEEEecccccc---c-Ch--------h-------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 191 DIIISEWMGYFL---L-FE--------N-------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 191 DvVvs~~~~~~l---~-~~--------~-------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
|.|++++..+.. . +. . ....++..+.++|||||+++.+++++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999987543221 1 11 1 13577888999999999999766553
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-11 Score=111.72 Aligned_cols=127 Identities=22% Similarity=0.230 Sum_probs=92.5
Q ss_pred HHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEE
Q 015306 98 EEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITV 175 (409)
Q Consensus 98 ~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~ 175 (409)
..++-|...++.+.... ..+++|||+-|=||.+++.++..|+.+|++||.|. +++.+++++..|+++ +++++
T Consensus 105 tGlFlDqR~nR~~v~~~------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~ 178 (286)
T PF10672_consen 105 TGLFLDQRENRKWVRKY------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRF 178 (286)
T ss_dssp TSS-GGGHHHHHHHHHH------CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEE
T ss_pred ceEcHHHHhhHHHHHHH------cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEE
Confidence 34555666665554442 46899999999999999999999999999999999 999999999999986 68999
Q ss_pred EEcccccccC---CCCceeEEEEecccccccC---hhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 176 LKGKIEEIEL---PVTKVDIIISEWMGYFLLF---ENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 176 ~~~d~~~~~~---~~~~~DvVvs~~~~~~l~~---~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+..|+.+..- ..++||+||++|+.+.-.. ......++..+.++|+|||.++.+++
T Consensus 179 ~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 179 IQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred EecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 9999987431 2479999999985432111 23456778888899999999885443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-11 Score=106.71 Aligned_cols=129 Identities=21% Similarity=0.227 Sum_probs=97.8
Q ss_pred HhhcChHhHHHHHHHHHhcc---CCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 015306 99 EMLKDVVRTKSYQNVIYQNK---FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (409)
Q Consensus 99 ~~l~d~~r~~~~~~~l~~~~---~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (409)
..+-++..++.+.+++.... ....+..+||+|||+|.+++.++. .+...|+|||.|+ ++..|.+|+..+++.+++
T Consensus 122 gVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 122 GVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred CeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 35557778888888776533 234455899999999999999988 6788999999999 999999999999999999
Q ss_pred EEEEccccccc-----CCCCceeEEEEecccccccCh------------h------------HHHHHHHHHHhcccCCeE
Q 015306 174 TVLKGKIEEIE-----LPVTKVDIIISEWMGYFLLFE------------N------------MLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 174 ~~~~~d~~~~~-----~~~~~~DvVvs~~~~~~l~~~------------~------------~~~~~l~~~~~~LkpgG~ 224 (409)
.+++-+++... +..+++|+++||+. |....+ + .+-.+..-..|+|+|||.
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~ 280 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGF 280 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCe
Confidence 99987666543 33589999999973 432211 1 122444556799999998
Q ss_pred EEcc
Q 015306 225 VLPD 228 (409)
Q Consensus 225 lip~ 228 (409)
+.++
T Consensus 281 ~~le 284 (328)
T KOG2904|consen 281 EQLE 284 (328)
T ss_pred EEEE
Confidence 8754
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=107.32 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=79.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++...+..+++.+..+|+.. ..++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence 35678999999999999999999866 699999999 999999999888876679999999543 3478999998543
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+++ ....+..+++.+.+++++++.+.
T Consensus 137 l~~~-~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 137 LIHY-PQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcC-CHHHHHHHHHHHHhhcCCeEEEE
Confidence 2222 23456778888888776555443
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.3e-11 Score=104.27 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-CC-CceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-PV-TKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-~~-~~~DvVvs 195 (409)
.++.+|||++||+|.+++.++.+|+++|+++|.++ +++.+++++..+++.++++++++|+.+.. + .. ..+|+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 46889999999999999999999999999999999 99999999999998778999999996542 2 11 24899998
Q ss_pred ecccccccChhHHHHHHHHH--HhcccCCeEEEccC
Q 015306 196 EWMGYFLLFENMLNTVLYAR--DKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~~ 229 (409)
+|. |.- .....++..+ ..+|+++|.++...
T Consensus 128 DPP-y~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 128 DPP-FFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CcC-CCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 874 322 2233444433 35789999988654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.4e-11 Score=118.29 Aligned_cols=115 Identities=15% Similarity=0.052 Sum_probs=88.4
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCceeEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~DvV 193 (409)
....++.+|||+|||+|..+..+++ .+..+|+|+|+++ +++.+++++...|+...+++..+|...... +.++||.|
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 4457889999999999999999998 4556999999999 999999999999986445557777765443 45789999
Q ss_pred EEecccccc---cChh----------------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 194 ISEWMGYFL---LFEN----------------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 194 vs~~~~~~l---~~~~----------------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
++++..+.. ...+ ....++..+.++|||||.++.+++++
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 987532221 1111 13578888899999999999776654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.2e-11 Score=107.22 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CCCC
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPVT 188 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~ 188 (409)
...++.+|||||||+|.++..+++. + ..+|+|||++++. .+.+ ++++++|+.+.. +..+
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~~-v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIVG-VDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCCC-cEEEecCCCChHHHHHHHHHhCCC
Confidence 3577889999999999999999885 3 3599999998831 2223 899999998853 4567
Q ss_pred ceeEEEEecccccccChh--------HHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLLFEN--------MLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~lip 227 (409)
+||+|+|++..++..... ....++..+.++|||||.++.
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 899999986443322110 124678899999999999884
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.8e-11 Score=108.80 Aligned_cols=98 Identities=21% Similarity=0.204 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.+.+|||+|||+|.+++.+++. +..+|+++|+++ +++.++++. .+++++++|+.++... .+||+|++++..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~-~kFDlIIsNPPF 136 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESN-EKFDVVISNPPF 136 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhccc-CCCcEEEEcCCc
Confidence 4568999999999999988874 356999999999 999998864 2488999999987644 789999999754
Q ss_pred ccccChhH-----------------HHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENM-----------------LNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~-----------------~~~~l~~~~~~LkpgG~li 226 (409)
..+..... +..++.....+|+|+|.++
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 33222111 2355566667778887654
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-11 Score=116.00 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=100.1
Q ss_pred hhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcE
Q 015306 96 IHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVI 173 (409)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i 173 (409)
.+..++.|...+..+... ...|++|||+.|=||.+++.+|..|+++|++||.|. .++.|++|+..||++ +++
T Consensus 197 ~kTGfFlDqR~~R~~l~~------~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~ 270 (393)
T COG1092 197 LKTGFFLDQRDNRRALGE------LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRH 270 (393)
T ss_pred ccceeeHHhHHHHHHHhh------hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccce
Confidence 333445555544444322 234999999999999999999999999999999999 999999999999985 668
Q ss_pred EEEEccccccc----CCCCceeEEEEecccccccCh-------hHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 174 TVLKGKIEEIE----LPVTKVDIIISEWMGYFLLFE-------NMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 174 ~~~~~d~~~~~----~~~~~~DvVvs~~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
.++++|+.++- -...+||+||.+|+.+ .... .+...++..+.++|+|||.++.+++.
T Consensus 271 ~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF-~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 271 RFIVGDVFKWLRKAERRGEKFDLIILDPPSF-ARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred eeehhhHHHHHHHHHhcCCcccEEEECCccc-ccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99999998864 1245999999998533 3222 24467788888999999999976554
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-11 Score=109.40 Aligned_cols=101 Identities=18% Similarity=0.164 Sum_probs=75.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc----C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~----g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
..++.+|||||||+|.++..+++. | ..+|+|+|+|+ |++.|+++....+ +++...+...++.++++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccCCCccEE
Confidence 356789999999999999888762 3 34899999999 9999988765432 566666666666566899999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++.+.+++.. ..+..+++++.++++ ++.++
T Consensus 134 ~~~~~lhh~~d-~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 134 TSNHFLHHLDD-AEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred EECCeeecCCh-HHHHHHHHHHHHhcC-eeEEE
Confidence 99765454432 335688999999998 44433
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.5e-11 Score=102.87 Aligned_cols=106 Identities=22% Similarity=0.293 Sum_probs=79.8
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
.+.....++.+|||||||+|.++..+++. ..+|+++|+++ +++.+++++.. .++++++++|+.++.++..++|.|
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCCEE
Confidence 33345567889999999999999999998 46999999999 99999988754 246999999999988775679999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++++. |.. ....+..++.. ..+.++|.++.+
T Consensus 82 i~n~P-y~~-~~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLP-YNI-STPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred EECCC-ccc-HHHHHHHHHhc--CCCcceEEEEEE
Confidence 99864 333 22344444432 224577777754
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.8e-11 Score=117.16 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=90.1
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvV 193 (409)
....+|.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++...|+.+ ++++++|+..++ ...++||.|
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCCEE
Confidence 44578899999999999999999884 356999999999 9999999999999864 999999998765 334789999
Q ss_pred EEecccccccC---hh----------------HHHHHHHHHHhcccCCeEEEccCCc
Q 015306 194 ISEWMGYFLLF---EN----------------MLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 194 vs~~~~~~l~~---~~----------------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
++++..+.... .+ ....++..+.++|||||.++.++++
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 99754332211 01 2256788889999999999977665
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=116.89 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=88.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....+|.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++...|+. +|+++.+|+.++. +.++||+|+
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD~Vl 323 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPDAIL 323 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCCEEE
Confidence 34568899999999999999988873 245999999999 999999999999985 5999999998875 347899999
Q ss_pred Eeccccccc------------Chh-------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 195 SEWMGYFLL------------FEN-------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 195 s~~~~~~l~------------~~~-------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
+++...... ... ....++..+.++|||||+++.+++++
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 875322111 111 12368889999999999999776653
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=125.69 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=100.2
Q ss_pred hhhhHHhhcChHhHHHHHHHHHhccC-CCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCC
Q 015306 94 FGIHEEMLKDVVRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS 170 (409)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~l~~~~~-~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~ 170 (409)
+......+-++..++.+.+.+..... ..++.+|||||||+|.+++.+++. +..+|+|+|+|+ +++.|++|+..|+++
T Consensus 89 ~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 89 MMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALD 168 (1082)
T ss_pred eeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 34445567778888888888543211 124579999999999999999985 457999999999 999999999987542
Q ss_pred ---------------CcEEEEEcccccccCC-CCceeEEEEecccccccC------------h-----------------
Q 015306 171 ---------------NVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLF------------E----------------- 205 (409)
Q Consensus 171 ---------------~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~------------~----------------- 205 (409)
++++++++|+.+.... ..+||+|||++. |.... +
T Consensus 169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~ 247 (1082)
T PLN02672 169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGF 247 (1082)
T ss_pred cccccccccccccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCC
Confidence 5799999999775422 137999999973 32211 0
Q ss_pred -------hHHHHHHHHHHhcccCCeEEEccCC
Q 015306 206 -------NMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 206 -------~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
.....++....++|+|||.++....
T Consensus 248 ~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 248 VEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred CCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 1125677778899999999986643
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-11 Score=107.09 Aligned_cols=103 Identities=22% Similarity=0.216 Sum_probs=76.9
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.+.+.+.+|.+|||||||+|..+..+++. |. .+|++||..+ +++.|++++...++. +++++.+|.........+|
T Consensus 64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-SE
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCCc
Confidence 444456889999999999999999999994 53 3799999999 999999999998886 5999999987755445789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|.|++... .. ..+ ..+.+.|++||+++
T Consensus 143 D~I~v~~a---~~--~ip----~~l~~qL~~gGrLV 169 (209)
T PF01135_consen 143 DRIIVTAA---VP--EIP----EALLEQLKPGGRLV 169 (209)
T ss_dssp EEEEESSB---BS--S------HHHHHTEEEEEEEE
T ss_pred CEEEEeec---cc--hHH----HHHHHhcCCCcEEE
Confidence 99998532 21 222 33456799999987
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=110.31 Aligned_cols=101 Identities=24% Similarity=0.198 Sum_probs=79.2
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
.....++.+|||||||+|.++..+++. + ..+|+++|.++ +++.|++++..+++. ++.++.+|..+.....++||+|
T Consensus 75 ~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~~~~fD~I 153 (322)
T PRK13943 75 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPEFAPYDVI 153 (322)
T ss_pred hcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccccCCccEE
Confidence 345678899999999999999999984 3 24799999999 999999999998884 5999999987765444689999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++.. .. ..+...+.+.|+|||+++.
T Consensus 154 i~~~---g~------~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 154 FVTV---GV------DEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred EECC---ch------HHhHHHHHHhcCCCCEEEE
Confidence 9742 11 1223345678999998763
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=117.16 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=89.0
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~Dv 192 (409)
....++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++..+|+.+ ++++++|+.++. ++ ++||+
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~-~~fD~ 323 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFA-EKFDK 323 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhc-ccCCE
Confidence 34567889999999999999999984 356999999999 9999999999999865 999999998763 33 78999
Q ss_pred EEEeccccccc------------ChhH-------HHHHHHHHHhcccCCeEEEccCCce
Q 015306 193 IISEWMGYFLL------------FENM-------LNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 193 Vvs~~~~~~l~------------~~~~-------~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
|++++..+... .+.. ...++..+.++|||||.++.+++++
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 99986422110 0111 2457888899999999999655543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=110.78 Aligned_cols=100 Identities=19% Similarity=0.177 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC----CCcEEEEEcccccccCCCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
.++.+|||||||+|.+++.+++.|. +|+|+|+|+ |++.|+++....+. ..++++...|+.++ +++||+|+|
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 3678999999999999999999865 899999999 99999999876421 13588999998765 378999998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..+..++.. .....++..+.+ +.+||.+|
T Consensus 219 ~~vL~H~p~-~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQ-DKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecCH-HHHHHHHHHHHh-hcCCEEEE
Confidence 644332222 233456666654 45677665
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=111.68 Aligned_cols=107 Identities=11% Similarity=-0.014 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCC----ceeE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVT----KVDI 192 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~----~~Dv 192 (409)
.++.+|||+|||+|..+..+++.. ..+|+++|+|+ |++.|++++....-.-++.++++|+.+. .++.. ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 466899999999999999999864 35899999999 9999998877543223478899999873 34322 2223
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++....+ .........+++.+.+.|+|||.++..
T Consensus 142 ~~~gs~~~-~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIG-NFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEeccccc-CCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 33322212 223556778999999999999998853
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=90.92 Aligned_cols=101 Identities=31% Similarity=0.354 Sum_probs=81.5
Q ss_pred EEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEecccccc
Q 015306 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWMGYFL 202 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~DvVvs~~~~~~l 202 (409)
+|+|+|||+|.++..+++.+..+++++|.++ ++..+++.....+ ..+++++..|+.+... ..+++|+|+++.+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999999886677999999999 9998886444333 3569999999988764 45789999997653321
Q ss_pred cChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 203 LFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
......+++.+.+.|+|||.++..
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 567788899999999999999864
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=109.26 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C--CCcEEEEEccccccc-CCCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F--SNVITVLKGKIEEIE-LPVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~~-~~~~~~DvV 193 (409)
..+++||+||||+|.++..+++. +..+|++||+++ +++.|++.+...+ . +.+++++.+|+..+. ...++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35679999999999999999986 678999999999 9999999886432 2 467999999998753 234789999
Q ss_pred EEecccccccChh-HHHHHHHHHHhcccCCeEEEccCC
Q 015306 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 194 vs~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+++.......... ....+++.+.+.|+|||+++....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9975332211111 136778889999999999985433
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.8e-11 Score=104.35 Aligned_cols=105 Identities=29% Similarity=0.369 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C--CCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L--PVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~~~DvVvs 195 (409)
.++.+|||+.||+|.+++.++.+|+++|+.||.++ ++...++|++..+..++++++..|+...- . ...+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 58999999999999999999999999999999999 99999999999999888999999975543 2 3589999999
Q ss_pred ecccccccChhH-HHHHHHHHH--hcccCCeEEEccC
Q 015306 196 EWMGYFLLFENM-LNTVLYARD--KWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~~-~~~~l~~~~--~~LkpgG~lip~~ 229 (409)
+|+ |.. .. ...++..+. .+|+++|.++.+.
T Consensus 121 DPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 121 DPP-YAK---GLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp --S-TTS---CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCC-ccc---chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 984 332 22 356666654 8999999998543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-10 Score=109.43 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.+++.+++.+ .+|+|+|.++ +++.|++++..+++ ++++++++|+.++.. ..++||+|++++.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 457899999999999999999976 5999999999 99999999999998 469999999988643 2357999999975
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-. +....+++.+ .-++|+++++.
T Consensus 250 r~-----G~~~~~~~~l-~~~~~~~ivyv 272 (315)
T PRK03522 250 RR-----GIGKELCDYL-SQMAPRFILYS 272 (315)
T ss_pred CC-----CccHHHHHHH-HHcCCCeEEEE
Confidence 22 2222333333 23567776663
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-10 Score=113.62 Aligned_cols=113 Identities=23% Similarity=0.188 Sum_probs=86.3
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
++.+.+.+.......++.+|||+|||+|.+++.+++.+ .+|+|+|+|+ +++.|++++..+++.+ ++++.+|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhh
Confidence 44555555555556678899999999999999999975 5999999999 9999999999999854 999999997642
Q ss_pred ---CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 185 ---~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+..++||+|++++.-. + ...++..+.+ ++|+++++.+
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~-----g-~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRA-----G-AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhhhhcCCCCEEEECcCCc-----C-hHHHHHHHHh-cCCCeEEEEE
Confidence 3346799999987522 1 2244455544 5888877643
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=102.39 Aligned_cols=115 Identities=18% Similarity=0.258 Sum_probs=93.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE-ccccc
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEE 182 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~ 182 (409)
.-.|...+.+ ..++++|||||++.|.-++.+|. .+ ..++++||.++ +++.|++++++.|+.++|+++. +|..+
T Consensus 47 ~g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~ 123 (219)
T COG4122 47 TGALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD 123 (219)
T ss_pred HHHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH
Confidence 4455555543 35889999999999999999999 44 56999999999 9999999999999999999999 57766
Q ss_pred cc--CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 183 IE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 183 ~~--~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
.- ...++||+|+.+. .....+.+++.+.++|+|||+++....
T Consensus 124 ~l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 124 VLSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 43 2358999999753 235667889999999999999986543
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-10 Score=104.67 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=76.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D 191 (409)
..+.++.+|||+|||+|.++..++.. | ...|+|||+++ +.+.+.+.+... .+|.++..|+... ....++||
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCC
Confidence 45688999999999999999999995 3 45899999999 876665554432 3488899998642 12236899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+++.. .......++.++.++|||||.++.
T Consensus 205 vV~~Dva-----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 205 VIFADVA-----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EEEEeCC-----CcchHHHHHHHHHHhccCCCEEEE
Confidence 9999753 123444566678899999999885
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=99.88 Aligned_cols=106 Identities=27% Similarity=0.407 Sum_probs=75.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcC--CCCcEEEEEccccccc----CCCCce
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANG--FSNVITVLKGKIEEIE----LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~~~~~ 190 (409)
....++++|||||||+|..++.+++. +..+|+..|.++.++.++.++..|+ ...++.+...|..+.. +...+|
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 45678899999999999999999997 7889999999888899999999987 5677888888775521 334689
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|+|++.- ++..+...+.++..+.++|+++|.++
T Consensus 121 D~IlasD---v~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 121 DVILASD---VLYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp SEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred CEEEEec---ccchHHHHHHHHHHHHHHhCCCCEEE
Confidence 9999853 35667888999999999999998755
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=105.36 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=87.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C----CCCce
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 190 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~ 190 (409)
..++++|||||||+|..++.+++. + ..+|+++|.++ .++.|+++++..|+.++|+++.+|+.+.- + ..++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 456889999999999999999983 3 45899999999 99999999999999999999999997742 1 13689
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
|+|+.+. .......+++.+.++|+|||.++....
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999754 235667888888899999999986543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-10 Score=102.00 Aligned_cols=104 Identities=21% Similarity=0.303 Sum_probs=85.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C----CCCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~D 191 (409)
.+.++||||||++|..++.+|+. + ..+|+.+|.++ .++.|++++...|+.++|+++.+|+.+.- + +.++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 56789999999999999999984 3 46999999999 99999999999999999999999998742 1 125899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+|+.+. ........++.+.++|+|||.++....
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccc
Confidence 999764 234556777788899999999996543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-10 Score=103.19 Aligned_cols=106 Identities=22% Similarity=0.251 Sum_probs=82.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--- 186 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--- 186 (409)
.|.....+.||.+|||.|.|+|.++..+++. +..+|+..|..+ .++.|+++++..++.+++++.+.|+....++
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 3445578899999999999999999999983 467999999999 9999999999999998999999999764442
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcc-cCCeEEE
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVL 226 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~li 226 (409)
+..+|.|+.++. .+-.++..+.+.| |+||+++
T Consensus 111 ~~~~DavfLDlp--------~Pw~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 111 ESDFDAVFLDLP--------DPWEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp TTSEEEEEEESS--------SGGGGHHHHHHHE-EEEEEEE
T ss_pred cCcccEEEEeCC--------CHHHHHHHHHHHHhcCCceEE
Confidence 367999998753 3345567777889 8999987
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-10 Score=100.97 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=73.0
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--------C
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--------L 185 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 185 (409)
.....++.+|||+|||+|.++..+++. +..+|+++|+++ + .. .+++++++|+.+.. +
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHh
Confidence 345678999999999999999988874 355899999999 5 11 23788888987643 3
Q ss_pred CCCceeEEEEeccccc-----ccCh---hHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYF-----LLFE---NMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~-----l~~~---~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.++||+|+++...++ +.+. .....++..+.++|+|||+++.
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 4568999998642211 1111 1346788999999999999885
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=95.14 Aligned_cols=118 Identities=22% Similarity=0.314 Sum_probs=90.1
Q ss_pred HHHHHHHhccC--CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 109 SYQNVIYQNKF--LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 109 ~~~~~l~~~~~--~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
..++++-.... ...|.+|||+-+|+|.+++.++.+|+.+++.||.+. .+..+++|+...++..+++++..|+....
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~ 107 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK 107 (187)
T ss_pred HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHH
Confidence 34444444333 378999999999999999999999999999999999 99999999999998888999999998542
Q ss_pred -CC-CCceeEEEEecccccccChhHH--HHHHHH--HHhcccCCeEEEccCC
Q 015306 185 -LP-VTKVDIIISEWMGYFLLFENML--NTVLYA--RDKWLVDDGIVLPDKA 230 (409)
Q Consensus 185 -~~-~~~~DvVvs~~~~~~l~~~~~~--~~~l~~--~~~~LkpgG~lip~~~ 230 (409)
.. .++||+|+.+|+ |. .+.. ...+.. -..+|+|+|.++....
T Consensus 108 ~~~~~~~FDlVflDPP-y~---~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 108 QLGTREPFDLVFLDPP-YA---KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred hcCCCCcccEEEeCCC-Cc---cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 22 235999999985 32 1222 222222 4588999999986644
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.7e-10 Score=106.02 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH---------cCCCCcEEEEEccccccc----CCC
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA---------NGFSNVITVLKGKIEEIE----LPV 187 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~---------~~~~~~i~~~~~d~~~~~----~~~ 187 (409)
++.+|||||||-|.-..-....+..+++|+|++. .++.|+++... ....-...++.+|..... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 7899999999999888878888899999999999 99999998832 111123677888876532 232
Q ss_pred --CceeEEEEec-ccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 188 --TKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 188 --~~~DvVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+||+|-|-. +.|.+..+.....++..+...|+|||++|
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 5999999974 66777888888999999999999999998
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.4e-10 Score=105.27 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=97.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~ 186 (409)
.+.+++.+.....+|..|||--||||.+.+.+.-.|+ +|+|+|++. |++-|+.|++..++.+ ..+... |+..++++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCC
Confidence 4566677777889999999999999999999999988 999999999 9999999999998876 544444 99999998
Q ss_pred CCceeEEEEecccccccC-------hhHHHHHHHHHHhcccCCeEEEcc
Q 015306 187 VTKVDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..++|.|++++ .|.-.. +.....+++...++||+||++++.
T Consensus 262 ~~~vdaIatDP-PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 262 DNSVDAIATDP-PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred CCccceEEecC-CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 77899999997 343322 345678888999999999988753
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.09 E-value=7e-10 Score=98.86 Aligned_cols=99 Identities=31% Similarity=0.309 Sum_probs=74.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||+.||.|.+++.+|+ ..++.|+|+|++| +++.+++++..|++.++|.++++|..++.. ...+|-|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 57899999999999999999999 4467999999999 999999999999999999999999998865 58999999875
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+... ..++.+...++++||++-
T Consensus 178 p~~~-------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PESS-------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred hHHH-------HHHHHHHHHHhcCCcEEE
Confidence 4222 246677778899999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-11 Score=106.38 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=77.4
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVv 194 (409)
....+-+++||+|||||..+..+-.. +.+.+|+|+|+ |++.|.++--. + ++.++++..+. ...++||+|+
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y----D--~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY----D--TLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch----H--HHHHHHHHHHhhhccCCcccchh
Confidence 33344579999999999999988776 66999999999 99998775321 1 34455554332 3458999999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.- ++.+.+.++.++.....+|+|||.+.++.
T Consensus 194 AaD---Vl~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 194 AAD---VLPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred hhh---HHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 843 35555788999999999999999999764
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=104.29 Aligned_cols=114 Identities=20% Similarity=0.202 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEccccccc--CCCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIE--LPVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~DvV 193 (409)
.++++||+||||.|.++..+++.+ ..+|+.||+++ +++.|++.+... ++ +++++++.+|...+. .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999999999999999964 67999999999 999999988653 23 358999999987653 224689999
Q ss_pred EEecccccccCh-hHHHHHHHHHHhcccCCeEEEccCCceEE
Q 015306 194 ISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (409)
Q Consensus 194 vs~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (409)
+++......... -.-..+++.+.+.|+|||+++.+....|.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~ 211 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWL 211 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCccc
Confidence 997533211110 11357889999999999999866544443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=109.44 Aligned_cols=113 Identities=22% Similarity=0.228 Sum_probs=85.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
.+.+.+.+.......++.+|||+|||+|.+++.+++. +.+|+|+|+++ +++.|++++..+++. +++++.+|+.+..
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHH
Confidence 3444455554445567789999999999999999987 45999999999 999999999999985 5999999997642
Q ss_pred ---CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ---~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
....+||+|+.++.-. +....+++.+.+ ++|+++++.
T Consensus 355 ~~~~~~~~~D~vi~dPPr~-----G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRK-----GCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HHHhcCCCCCEEEECcCCC-----CCCHHHHHHHHh-cCCCEEEEE
Confidence 2235799999987522 222455555543 788887664
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-10 Score=99.85 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~DvVvs~~ 197 (409)
.++.+|||||||+|.++..+++.+...++|+|+++ +++.+++. +++++.+|+.+ + ++++++||+|++..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 46789999999999999998876555889999999 99887641 26788889876 3 25567899999975
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeE
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (409)
+ +++..++..+++++.+.++++..
T Consensus 84 ~---l~~~~d~~~~l~e~~r~~~~~ii 107 (194)
T TIGR02081 84 T---LQATRNPEEILDEMLRVGRHAIV 107 (194)
T ss_pred H---hHcCcCHHHHHHHHHHhCCeEEE
Confidence 4 44445677788888777765433
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-10 Score=102.60 Aligned_cols=120 Identities=20% Similarity=0.200 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcc--CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC-CCcEEEEEccccc
Q 015306 107 TKSYQNVIYQNK--FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF-SNVITVLKGKIEE 182 (409)
Q Consensus 107 ~~~~~~~l~~~~--~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~-~~~i~~~~~d~~~ 182 (409)
+..|..++.+.. ....|.+|||.+.|-|..++.++++|+.+|+.+|.++ .++.|.-|--..++ ...|+++.+|+.+
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 445666665543 3456999999999999999999999999999999999 99988765432222 2358999999988
Q ss_pred cc--CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 183 IE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 183 ~~--~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+. +++++||+|+.++.-+.+-.+-.-..+.+++.|+|||||.++
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 74 778999999999876666555566889999999999999988
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=107.29 Aligned_cols=100 Identities=11% Similarity=0.125 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~ 198 (409)
.++.+|||+|||+|.+++.++..+ .+|+|+|+++ +++.|++++..+++. +++++.+|+.+.... ..+||+|+.+++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 456899999999999999999875 5999999999 999999999999985 699999999875421 246999999986
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
-. +....+++.+. .++|+++++.+
T Consensus 310 r~-----G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 310 RR-----GIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CC-----CCcHHHHHHHH-hcCCCeEEEEE
Confidence 32 23344555553 36888877643
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-09 Score=97.20 Aligned_cols=105 Identities=16% Similarity=0.047 Sum_probs=82.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------c----CCCCcEEEEEcccccccCC-
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------N----GFSNVITVLKGKIEEIELP- 186 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~----~~~~~i~~~~~d~~~~~~~- 186 (409)
..++.+||+.|||.|.-+..||+.|. +|+|+|+|+ +++.+.+.... . .-...|+++++|+.++...
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34678999999999999999999998 799999999 98887552100 0 0124599999999998632
Q ss_pred --CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 187 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 --~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.++||+|+-..... .....+..+..+.+.++|+|||.++
T Consensus 120 ~~~~~fD~VyDra~~~-Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 120 NNLPVFDIWYDRGAYI-ALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred cccCCcCeeeeehhHh-cCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 26899998765433 3466778899999999999999876
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-10 Score=96.44 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=73.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~ 196 (409)
+.+|.+|||||||.|.+...+.+....+.+|+|+++ .+..+.+ +| +.++++|+.+.- +++++||.||.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCCCCccEEehH
Confidence 468999999999999999988885455999999999 7665544 23 679999998743 778999999975
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-. +.....+..+++++.|+-|.+=+-+|
T Consensus 83 qt---LQ~~~~P~~vL~EmlRVgr~~IVsFP 110 (193)
T PF07021_consen 83 QT---LQAVRRPDEVLEEMLRVGRRAIVSFP 110 (193)
T ss_pred hH---HHhHhHHHHHHHHHHHhcCeEEEEec
Confidence 43 55556778888888666553333333
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-09 Score=93.17 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=85.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcC-CC---------EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AA---------HVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g-~~---------~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (409)
....++.......++..|||.-||+|.+.+.++..+ .. +++|+|+++ +++.|++|+...++.+.+.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 455666666777888999999999999999988843 22 389999999 9999999999999998999999
Q ss_pred cccccccCCCCceeEEEEeccccccc--Ch----hHHHHHHHHHHhcccCCeEEE
Q 015306 178 GKIEEIELPVTKVDIIISEWMGYFLL--FE----NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 178 ~d~~~~~~~~~~~DvVvs~~~~~~l~--~~----~~~~~~l~~~~~~LkpgG~li 226 (409)
.|+.++++..+++|+||+++. |... .. .....+++.+.++|++...++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred cchhhcccccCCCCEEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999966689999999973 4331 11 223566788888899855544
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-10 Score=102.06 Aligned_cols=98 Identities=20% Similarity=0.211 Sum_probs=74.8
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l 202 (409)
+.++|+|||+|..++.+|.. .++|+|+|+|+ |++.|++........-..+....++.++.-+++++|+|++... +
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa---~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA---V 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh---H
Confidence 38999999999888889888 77999999999 9999988765443333345555566666555799999998532 2
Q ss_pred cChhHHHHHHHHHHhcccCCe-EEE
Q 015306 203 LFENMLNTVLYARDKWLVDDG-IVL 226 (409)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG-~li 226 (409)
+. -+++.+...+.|+||++| .+.
T Consensus 111 HW-Fdle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 111 HW-FDLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred Hh-hchHHHHHHHHHHcCCCCCEEE
Confidence 22 367899999999998766 554
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=102.55 Aligned_cols=108 Identities=23% Similarity=0.267 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHH-----HHcCC-CCcEEEEEccccccc-CCCCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIV-----EANGF-SNVITVLKGKIEEIE-LPVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~-----~~~~~-~~~i~~~~~d~~~~~-~~~~~~D 191 (409)
..+++||+||||+|..+..+++.+ ..+|++||+++ +++.|++.. ....+ +.+++++.+|+.++. ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999999864 67999999999 999999631 11122 468999999998853 2347899
Q ss_pred EEEEeccccccc--ChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 192 IIISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 192 vVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|+++....... ..-.-..+++.+.+.|+|||+++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999985322111 1112257889999999999998754
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=96.57 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=77.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcC---------------------------
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG--------------------------- 168 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~--------------------------- 168 (409)
.....++.+|||||.+|.++..+|+ .|...|.|+|+++ .+..|+++++..-
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 4567788999999999999999999 7899999999999 9999999875321
Q ss_pred -------CCCcEEEE-------EcccccccCCCCceeEEEEeccc---ccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 169 -------FSNVITVL-------KGKIEEIELPVTKVDIIISEWMG---YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 169 -------~~~~i~~~-------~~d~~~~~~~~~~~DvVvs~~~~---~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++++.+. ..|+. .+....||+|+|-.+. +.-.+..-+..++..+.++|.|||++|.
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 00111111 11111 1234789999983211 2223345577999999999999999984
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-09 Score=98.88 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEccccccc-CCCCceeEEEE
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 195 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~DvVvs 195 (409)
.+++||+||||+|.++..+++.+ ..+|+++|+++ +++.|++.+...+ + ..+++++.+|..... ...++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45699999999999999988865 67999999999 9999999875432 1 246888988886642 22478999999
Q ss_pred ecccccccChh-HHHHHHHHHHhcccCCeEEEccC
Q 015306 196 EWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.......... ....+++.+.+.|+|||+++...
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 75422111111 13577889999999999998653
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-09 Score=99.80 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=87.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-----cEEEEEccccccc------C
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKIEEIE------L 185 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~------~ 185 (409)
....++..++|+|||-|.-.+-.-++|...++|+|+.+ .+..|+++.+...-.. .+.|+.+|..... +
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred HHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 34578889999999999999888899999999999999 9999988876432111 2688999886532 3
Q ss_pred CCCceeEEEEe-cccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 186 PVTKVDIIISE-WMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 186 ~~~~~DvVvs~-~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++.+||+|-|- .+.|.+..+.....++..+.+.|+|||++|
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 44569999986 355667777788889999999999999998
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-09 Score=97.66 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-C----CCc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-P----VTK 189 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-~----~~~ 189 (409)
..+.++|||||+++|.-++.+|+. + ..+|+++|.++ .++.|++++...|+.++|+++.+++.+.- + . .++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 356789999999999999999984 3 45999999999 99999999999999999999999997752 1 1 268
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
||+|+.+. ........++.+.++|+|||+++....
T Consensus 157 fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 157 FDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred ccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 99999753 234456777888899999999986543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=110.75 Aligned_cols=110 Identities=18% Similarity=0.162 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCC-CEEEEEecHH-HHHHHHHHH--HH---cCC-CCcEEEEEccccccc-CCCCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIV--EA---NGF-SNVITVLKGKIEEIE-LPVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~--~~---~~~-~~~i~~~~~d~~~~~-~~~~~~D 191 (409)
.++++|||||||+|.++..+++.+. .+|++||+++ +++.++++. .. ..+ +++++++.+|..+.. ...++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4568999999999999999999764 7999999999 999999842 21 122 257999999998753 2247899
Q ss_pred EEEEecccccccC--hhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 192 IIISEWMGYFLLF--ENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 192 vVvs~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+|+++........ .-.-..+++.+.+.|||||+++.+..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9999854321110 01124678889999999999987653
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-09 Score=93.38 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccc-cccCCCCceeEEEEeccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EIELPVTKVDIIISEWMG 199 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~DvVvs~~~~ 199 (409)
.+.-|||||||+|+.+..+...|. ..+|+|+|+ |++.|.+.--+ -.++.+|+- .+++..+.||-+|+....
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 467899999999999999988884 999999999 99999863221 246677774 467888999999984222
Q ss_pred ccccC--------hhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLF--------ENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~--------~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+++ ...+..++..+...|++|++.+.+
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 22322 123456677789999999998743
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.4e-09 Score=99.80 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEE-ccccccc----CCCCceeEE
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLK-GKIEEIE----LPVTKVDII 193 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~~----~~~~~~DvV 193 (409)
++.+|||||||+|.+...++. ....+++|+|+++ +++.|++++..| ++.++|+++. .+..++. .+.++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999977666655 4456999999999 999999999999 7988899864 3333322 234789999
Q ss_pred EEecc
Q 015306 194 ISEWM 198 (409)
Q Consensus 194 vs~~~ 198 (409)
+|++.
T Consensus 194 vcNPP 198 (321)
T PRK11727 194 LCNPP 198 (321)
T ss_pred EeCCC
Confidence 99985
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=89.82 Aligned_cols=96 Identities=27% Similarity=0.348 Sum_probs=81.1
Q ss_pred EEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccc
Q 015306 125 VVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l 202 (409)
+++|||+|.|.-++.+|- .+..+|+.+|.+. -+...+......++++ ++++++++++ .....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc-cccCCCccEEEeehh----
Confidence 899999999999999998 5677999999999 9999999999999975 9999999999 333489999999876
Q ss_pred cChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 203 LFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..+..++.-+.++|++||.++...
T Consensus 125 ---~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 ---APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ---SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 456788889999999999988543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-09 Score=96.41 Aligned_cols=107 Identities=24% Similarity=0.161 Sum_probs=81.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-c------C----CCCcEEEEEcccccccC
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-N------G----FSNVITVLKGKIEEIEL 185 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-~------~----~~~~i~~~~~d~~~~~~ 185 (409)
....++.+||..|||.|.-...+|+.|. +|+|+|+|+ +++.+.+.... . + -..+|+++++|+.++..
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3456778999999999999999999987 999999999 98887432211 0 0 12468999999999875
Q ss_pred CC-CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 186 PV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 186 ~~-~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.. ++||+|+-.... +...+.+.+...+.+.++|+|||.++
T Consensus 112 ~~~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SCHHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhcCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 42 579999976543 34466788899999999999999954
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.6e-09 Score=98.14 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=72.3
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
.+.|.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++...+..++++++++|+.+..+ ..
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~ 101 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PY 101 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cc
Confidence 3344444566788999999999999999999974 5899999999 999999999877755679999999988765 46
Q ss_pred eeEEEEecccccc
Q 015306 190 VDIIISEWMGYFL 202 (409)
Q Consensus 190 ~DvVvs~~~~~~l 202 (409)
+|+|++++ .|.+
T Consensus 102 ~d~VvaNl-PY~I 113 (294)
T PTZ00338 102 FDVCVANV-PYQI 113 (294)
T ss_pred cCEEEecC-Cccc
Confidence 89999986 3444
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=99.93 Aligned_cols=101 Identities=25% Similarity=0.291 Sum_probs=87.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..+|.+|||.-||.|.+++.+|+.|...|+|+|++| +++.+++++..|++.++++.+++|+.++....+.+|-|++..+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 456999999999999999999999987899999999 9999999999999999999999999998755588999998543
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....++....+.+++||++..
T Consensus 266 -------~~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 266 -------KSAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred -------CcchhhHHHHHHHhhcCcEEEE
Confidence 2234566666688889998763
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.8e-09 Score=101.98 Aligned_cols=98 Identities=18% Similarity=0.207 Sum_probs=80.4
Q ss_pred CCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
+.+|||++||+|.+++.++. .++.+|+++|+++ +++.+++|++.|++.+ ++++++|+..+....++||+|+.+++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 56899999999999999987 5667999999999 9999999999999865 78999999775321367999999874
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+....++....+.+++||++..+
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 23345666655778999998865
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=90.34 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=78.5
Q ss_pred CEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEecc
Q 015306 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~DvVvs~~~ 198 (409)
..+||||||.|.+.+.+|+ .+...++|+|+.. .+..|.+.+...+++| +.++++|+..+- ++++++|-|.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3899999999999999998 6778999999999 9999988888888865 999999998732 45689999998643
Q ss_pred cccccCh---h--HHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFE---N--MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~---~--~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.-..-.. . .-+.++..+.++|+|||.+...
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 3222110 0 2268899999999999988743
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=95.49 Aligned_cols=83 Identities=23% Similarity=0.334 Sum_probs=67.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
..+.+.......++.+|||||||+|.++..+++.+ .+|+++|+++ +++.+++++.. . ++++++++|+.+++++
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~~-- 90 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDLP-- 90 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCch--
Confidence 33344444556788999999999999999999984 5999999999 99999988754 2 4699999999987764
Q ss_pred ceeEEEEecc
Q 015306 189 KVDIIISEWM 198 (409)
Q Consensus 189 ~~DvVvs~~~ 198 (409)
.+|.|++++.
T Consensus 91 ~~d~Vv~NlP 100 (258)
T PRK14896 91 EFNKVVSNLP 100 (258)
T ss_pred hceEEEEcCC
Confidence 5899999974
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.9e-09 Score=99.78 Aligned_cols=224 Identities=14% Similarity=0.065 Sum_probs=147.4
Q ss_pred CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc-cccChhHH--HHHHHHHHhccc
Q 015306 145 AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY-FLLFENML--NTVLYARDKWLV 220 (409)
Q Consensus 145 ~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~-~l~~~~~~--~~~l~~~~~~Lk 220 (409)
..+++-.+.++ .-....+++-...+.+ ++.+..= ...+ ++.|++.++++.- .+..-..+ -.....+...+-
T Consensus 389 ~~~r~~~~l~e~~r~if~~~~~~~Klsn-~e~vp~i---~t~~-ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G 463 (636)
T KOG1501|consen 389 WPKRIQARLSERERVIFNQRLIQLKLSN-NESVPAI---MTSP-DSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHG 463 (636)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhh---hcCC-CCCceeecchhhhhccCchhheeeeeeHHHHHHhcC
Confidence 44677777776 5555555555544432 3332211 1233 4568777665311 11100111 122345567788
Q ss_pred CCeEEEccCCceEEEEccccccchhhhccccccccccchhhhhhh-----------ccCCeEEeeCCCcccCcccceeEe
Q 015306 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQA-----------MMEPLVDTVDQNQIVTNCQLLKTM 289 (409)
Q Consensus 221 pgG~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~d~~~~~~~~-----------~~~p~~~~~~~~~~ls~p~~~~~~ 289 (409)
|+-.+.|+.+.+.+.+....+++..... ...+.|||++.+++.. -++|+|+| ++.++++|..++.|
T Consensus 464 ~~~~V~P~~~~L~Ai~~kF~DL~~I~S~-~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWEY--~~~~~~d~~eIL~F 540 (636)
T KOG1501|consen 464 DELRVEPHMGVLKAIPEKFEDLQNIASD-VGTVNGFDLSFFDEISTKARTATDAIVDEQSLWEY--AGIVKGDAVEILRF 540 (636)
T ss_pred CceeeccccchhhhhhHHHHHHHhhccc-ccccccceeeehhHHHHhhchhhhhhhccchhhhc--cCeecCCceeEEEe
Confidence 9999999999999999888887765443 5678999998777654 24788988 78899999999999
Q ss_pred eCCCCCCCCCceeeeeEEEEeecceEeEEEEEEEEEEcCCCceeEeecccccCCCC----CCCCceeEEEecCCceecCC
Q 015306 290 DISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKS----RATHWKQTVLYLEDVLTICE 365 (409)
Q Consensus 290 d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~ls~~~~t~p~~----~~~~W~q~v~~l~~p~~v~~ 365 (409)
+|....+.+ .-.+.+.+.+.-|++..|++++|. ++.||++++..-.. +-.|.+|+||+....+.-
T Consensus 541 ~~~~~V~~Q-----k~~V~i~~~~sS~A~~mWME~~~~----~~nLSTGLL~~~~~G~~~WN~~~KQ~VYF~~t~L~~-- 609 (636)
T KOG1501|consen 541 PIDGRVSSQ-----KCVVNIDNMSSSNAIPMWMEWEFG----GINLSTGLLSISSAGVPEWNKGYKQGVYFPITALRN-- 609 (636)
T ss_pred ccCCccccc-----eeEEEccCCCccccceeeEEeeeC----ceeecccceeecCCCCcccCccccceeEEEhHHhCC--
Confidence 999866555 456778899999999999999998 48898554432222 235677999998544333
Q ss_pred CCEEEEEEEEeeCCCCCceeEEEEEEE
Q 015306 366 GEAISGSLTVAPNKKNPRDVDIMLKYS 392 (409)
Q Consensus 366 g~~i~~~~~~~~~~~~~r~~~~~~~~~ 392 (409)
.-++.+.+.+..++. +|.++|.
T Consensus 610 ~ksl~~~~~F~~~TG-----DI~~qF~ 631 (636)
T KOG1501|consen 610 DKSLCLHALFDKSTG-----DINFQFG 631 (636)
T ss_pred CceEEEEEEEcCCCC-----ceEEEec
Confidence 336777776665553 4555553
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=9e-09 Score=97.03 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=65.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
.+.+.....++.+|||||||+|.++..+++.+. +|+|+|+++ +++.+++++.. ++++++++|+.++++++-..|
T Consensus 33 ~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 33 KIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCcc
Confidence 334344567888999999999999999999865 999999999 99999887642 469999999999876522269
Q ss_pred EEEEecc
Q 015306 192 IIISEWM 198 (409)
Q Consensus 192 vVvs~~~ 198 (409)
.||+++.
T Consensus 108 ~vv~NlP 114 (272)
T PRK00274 108 KVVANLP 114 (272)
T ss_pred eEEEeCC
Confidence 9999974
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-08 Score=81.81 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=72.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCCh-HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGI-LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP- 186 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~-l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~- 186 (409)
+.+.|.++....++.+|||||||+|. ++..+++.|. .|+|+|+++ .++.++++ .+.++.+|+.+..+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH
Confidence 33445544444567899999999996 9999999876 999999999 98888764 268999999887654
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-+.+|+|.+- .....+...+-++.+-+.-+-++.|
T Consensus 75 y~~a~liysi------rpp~el~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 75 YKNAKLIYSI------RPPRDLQPFILELAKKINVPLIIKP 109 (134)
T ss_pred HhcCCEEEEe------CCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 4789999983 2224444444455555554433333
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-08 Score=97.00 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=72.1
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC----------C-----
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP----------V----- 187 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----------~----- 187 (409)
.+|||+|||+|.+++.+++. +.+|+|||.++ +++.|++++..+++.+ ++++.+|+.++... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccc
Confidence 47999999999999988886 46999999999 9999999999999864 99999999874311 0
Q ss_pred -CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 -TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 -~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+|+|+.++.-. +..+.+++.+. +|+++++.
T Consensus 277 ~~~~d~v~lDPPR~-----G~~~~~l~~l~---~~~~ivYv 309 (353)
T TIGR02143 277 SYNCSTIFVDPPRA-----GLDPDTCKLVQ---AYERILYI 309 (353)
T ss_pred cCCCCEEEECCCCC-----CCcHHHHHHHH---cCCcEEEE
Confidence 2389999998632 33345555443 36666653
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=91.93 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=64.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHH-HHHHHHHcCCCCcE-EEEEcccc----
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANM-AKQIVEANGFSNVI-TVLKGKIE---- 181 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~-a~~~~~~~~~~~~i-~~~~~d~~---- 181 (409)
.+..++.......++++|||+|||+|.++..+++.|+++|+|+|+++ ++.. ++++ .++ .+-..++.
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTP 134 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCH
Confidence 34445554344468889999999999999999999999999999999 7765 2322 112 22333333
Q ss_pred -cccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 182 -EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 182 -~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++...-..+|++++.. ..++..+.++|+| |.++
T Consensus 135 ~~~~~d~~~~DvsfiS~-----------~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 135 ADIFPDFATFDVSFISL-----------ISILPELDLLLNP-NDLT 168 (228)
T ss_pred hHcCCCceeeeEEEeeh-----------HhHHHHHHHHhCc-CeEE
Confidence 2221223567666532 2246677788888 7665
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.1e-08 Score=97.12 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=78.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
.+.+.+.+...... .+.+|||++||+|.+++.+++. +++|+|||.++ +++.|++++..+++. +++++.+|+.+..
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 34444444443322 2357999999999999988886 56999999999 999999999999985 5999999997742
Q ss_pred -CC--------------CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LP--------------VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~--------------~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+. ..+||+|+.++.-. +..+.++..+.+ |+++++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~-----G~~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPRA-----GLDDETLKLVQA---YERILYI 318 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCCC-----CCcHHHHHHHHc---cCCEEEE
Confidence 10 12589999998632 233444554433 5665553
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.8e-08 Score=83.41 Aligned_cols=101 Identities=18% Similarity=0.270 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
....+||||||+|..+.++++. +...+.++|+++ +++...+.+..|+.. +..++.|+..--.+ +++|+++.++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~-~~VDvLvfNP- 118 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRN-ESVDVLVFNP- 118 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhcc-CCccEEEECC-
Confidence 3678999999999999999983 466899999999 999999999988864 88999998776444 9999999987
Q ss_pred cccccCh-------------------hHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFE-------------------NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~-------------------~~~~~~l~~~~~~LkpgG~li 226 (409)
+|....+ ...++++..+..+|.|.|.++
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 3433211 124677777888899999876
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=89.28 Aligned_cols=104 Identities=21% Similarity=0.149 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
...++||.|||-|..+..+...-+.+|..||+.+ .++.|++.+... .....++++..++++..+..+||+|++-|+.-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 3469999999999999877654488999999999 999999776541 22457899999999877668999999998766
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|.. .++-.++..+...|+|+|.|+.
T Consensus 134 hLTD-~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 134 HLTD-EDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp GS-H-HHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCH-HHHHHHHHHHHHhCcCCcEEEE
Confidence 6644 5667999999999999999884
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-08 Score=82.43 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=73.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
..|-.......|++++|+|||.|.++...+-.+...|+|+|+++ +++++.+|+....+. +.++++|+.++.+..+.|
T Consensus 38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~g~f 115 (185)
T KOG3420|consen 38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKGGIF 115 (185)
T ss_pred HHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccCCeE
Confidence 33444455678999999999999999777778888999999999 999999999988774 799999999998888999
Q ss_pred eEEEEecc
Q 015306 191 DIIISEWM 198 (409)
Q Consensus 191 DvVvs~~~ 198 (409)
|.++.++.
T Consensus 116 DtaviNpp 123 (185)
T KOG3420|consen 116 DTAVINPP 123 (185)
T ss_pred eeEEecCC
Confidence 99999863
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-08 Score=86.84 Aligned_cols=77 Identities=12% Similarity=-0.002 Sum_probs=62.9
Q ss_pred EEEecHH-HHHHHHHHHHHcC--CCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEE
Q 015306 149 YAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (409)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (409)
+|+|+|+ |++.|+++....+ ..++++++++|++++++++++||+|++. +.+++..+...++++++++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~---~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMG---YGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEec---chhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 4899999 9999987765322 2346999999999999888899999984 33555567889999999999999998
Q ss_pred Ecc
Q 015306 226 LPD 228 (409)
Q Consensus 226 ip~ 228 (409)
+..
T Consensus 78 ~i~ 80 (160)
T PLN02232 78 SIL 80 (160)
T ss_pred EEE
Confidence 743
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-08 Score=85.28 Aligned_cols=107 Identities=23% Similarity=0.364 Sum_probs=85.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
...+.|..+.....|++|||+|+|+|..++.+++.|++.|++.|+.+ ....++-|+..|+.. |.+...|... .+
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---~~ 140 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---SP 140 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---CC
Confidence 45566777778889999999999999999999999999999999999 999999999999975 8888888766 34
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeE
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (409)
..||+|+. +..+.+...-..++. +.+.|+..|.
T Consensus 141 ~~~Dl~La---gDlfy~~~~a~~l~~-~~~~l~~~g~ 173 (218)
T COG3897 141 PAFDLLLA---GDLFYNHTEADRLIP-WKDRLAEAGA 173 (218)
T ss_pred cceeEEEe---eceecCchHHHHHHH-HHHHHHhCCC
Confidence 88999998 444555555566666 4455544443
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=87.09 Aligned_cols=106 Identities=17% Similarity=0.183 Sum_probs=81.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
..+.......+..+|+|||+|+|.++..+++ .+..+++.+|.-++++.+++ .++|+++.+|+. .++| . +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P-~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLP-V-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCS-S-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhc-c-c
Confidence 3444445566778999999999999999998 67779999999558888877 478999999999 5666 4 9
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCC--eEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD--GIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg--G~lip~ 228 (409)
|+++...+.+.. .......+|+.+++.|+|| |+|+..
T Consensus 160 D~~~l~~vLh~~-~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 160 DVYLLRHVLHDW-SDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred cceeeehhhhhc-chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 999987654433 3455678999999999999 998743
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.3e-08 Score=93.33 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEccccccc-CCCCceeEEEE
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 195 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~DvVvs 195 (409)
.+++||.||+|.|.++..+++. +..+|+.||+++ +++.|++.+..++ + +.+++++.+|...+- ...++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5679999999999999999884 577999999999 9999999886432 2 468999999998864 23478999999
Q ss_pred ecccccccChh---HHHHHHH-HHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFEN---MLNTVLY-ARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~---~~~~~l~-~~~~~LkpgG~lip~ 228 (409)
+.....-.... .-..+++ .+.+.|+|||+++.+
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 74321100000 1245676 788999999998754
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.2e-08 Score=95.90 Aligned_cols=116 Identities=24% Similarity=0.183 Sum_probs=89.9
Q ss_pred hHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015306 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (409)
Q Consensus 104 ~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (409)
...++.+.....+.....++.+|||+-||.|.+++.+|+. ..+|+|+|+++ +++.|+++++.|++.| ++|+.+++++
T Consensus 275 ~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~ 352 (432)
T COG2265 275 PAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHH
Confidence 3345566666666666678899999999999999999976 66999999999 9999999999999987 9999999999
Q ss_pred ccCC---CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 183 IELP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 183 ~~~~---~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+... ...+|+|+.++.-.++ -+.+++.+. -++|..+++.
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~-~~~p~~IvYV 394 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPRAGA-----DREVLKQLA-KLKPKRIVYV 394 (432)
T ss_pred HhhhccccCCCCEEEECCCCCCC-----CHHHHHHHH-hcCCCcEEEE
Confidence 8643 2578999998864433 235555553 3456655553
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.1e-08 Score=87.99 Aligned_cols=95 Identities=25% Similarity=0.312 Sum_probs=82.4
Q ss_pred CCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc-eeEEEEeccc
Q 015306 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK-VDIIISEWMG 199 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~DvVvs~~~~ 199 (409)
+.+++|||+|.|.-++.+|- .+..+|+-+|... -+...+......+++| ++++++.++++... .. ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~-~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQE-KKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcccc-cccCcEEEeehc-
Confidence 68999999999999999885 5566799999999 9999999999999965 99999999998743 23 999999876
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..+..+..-+..++|+||.++
T Consensus 145 ------a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 ------ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ------cchHHHHHHHHHhcccCCcch
Confidence 566778888899999999876
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=88.51 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=87.8
Q ss_pred CEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEcccccccCC-CCceeEEEEec
Q 015306 124 KVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIELP-VTKVDIIISEW 197 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~-~~~~DvVvs~~ 197 (409)
++||-||.|.|..+..+++.+ ..+++.||+++ +++.+++.+.... . +.|++++..|..++--. .++||+|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999964 78999999999 9999999886543 2 47899999999887532 25899999975
Q ss_pred ccccccChhH-HHHHHHHHHhcccCCeEEEccCCceEEEE
Q 015306 198 MGYFLLFENM-LNTVLYARDKWLVDDGIVLPDKASLYLTA 236 (409)
Q Consensus 198 ~~~~l~~~~~-~~~~l~~~~~~LkpgG~lip~~~~~~~~~ 236 (409)
.......+.. -..+++.+++.|+++|+++.+....|...
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 4332111111 26889999999999999997755555443
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-07 Score=89.10 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=94.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCC----------------------------------------
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA---------------------------------------- 146 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~---------------------------------------- 146 (409)
.+.+..+|.......++..++|.=||+|.+.+.+|..+..
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 4567777777778888889999999999999999986521
Q ss_pred EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccc--cChhHHHHH----HHHHHhcc
Q 015306 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL--LFENMLNTV----LYARDKWL 219 (409)
Q Consensus 147 ~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l--~~~~~~~~~----l~~~~~~L 219 (409)
.++|+|+++ +++.|+.|+...|+.+.|+|.++|+.++..+.+.+|+||||+ .|.. ..+..+..+ ...+++.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP-PYGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP-PYGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC-CcchhcCChhhHHHHHHHHHHHHHHHh
Confidence 378999999 999999999999999999999999999876557999999997 3433 333334434 34455666
Q ss_pred cCCeEEEccC
Q 015306 220 VDDGIVLPDK 229 (409)
Q Consensus 220 kpgG~lip~~ 229 (409)
+--+..|+.+
T Consensus 335 ~~ws~~v~tt 344 (381)
T COG0116 335 AGWSRYVFTT 344 (381)
T ss_pred cCCceEEEEc
Confidence 6656666443
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=92.47 Aligned_cols=98 Identities=17% Similarity=0.142 Sum_probs=81.7
Q ss_pred CCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEecc
Q 015306 123 DKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~ 198 (409)
+.+|||+.||+|..++.++.. |+.+|+++|+++ +++.+++|++.|++. +++++++|+..+... ..+||+|..++.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 468999999999999999986 788999999999 999999999999886 489999999876422 357999998874
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+....+++.+.+.+++||.+...
T Consensus 124 -------Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 -------GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -------CCcHHHHHHHHHhcccCCEEEEE
Confidence 22345777777889999998754
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-07 Score=84.61 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=83.3
Q ss_pred CEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEecc
Q 015306 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~DvVvs~~~ 198 (409)
..+||||||.|.+...+|+ .+...++|||+.. .+..|.+.+.+.++. ++.+++.|+..+. +++++.|-|.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 6899999999999999888 6778999999999 999999999999986 5999999998864 34459999997643
Q ss_pred cccc--cChh---HHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFL--LFEN---MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l--~~~~---~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+-.. .|.. ..+.+++.+.+.|+|||.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 3221 1110 2368889999999999998854
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=86.40 Aligned_cols=94 Identities=32% Similarity=0.319 Sum_probs=71.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
...++||||+|.|..+..++.. .++|++.|.|+ |....++ .|+ +++ +..++.-.+.+||+|.| ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~----~vl--~~~~w~~~~~~fDvIsc---LN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGF----TVL--DIDDWQQTDFKFDVISC---LN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCC----eEE--ehhhhhccCCceEEEee---hh
Confidence 4568999999999999999886 67999999999 8665544 443 333 22233333468999998 34
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
.+..-..+..+++.+++.|+|+|++|.+-
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 46666678899999999999999988543
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-07 Score=93.20 Aligned_cols=113 Identities=15% Similarity=0.024 Sum_probs=88.0
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 194 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVv 194 (409)
...+|.+|||++||.|.-+..++.. +...|+++|+++ .++.+++++...|+.+ +.+.+.|...+. ...+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEE
Confidence 4578999999999999999999884 345899999999 9999999999999965 889999988753 1136799999
Q ss_pred Eecccccc----cChh---------------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 195 SEWMGYFL----LFEN---------------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 195 s~~~~~~l----~~~~---------------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
.+...+.. .++. ....++....++|||||++|-+++++
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 76543211 1111 11577888889999999999877763
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.5e-08 Score=82.58 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=56.7
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCc-eeEEEEecc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTK-VDIIISEWM 198 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~-~DvVvs~~~ 198 (409)
.+|+|+.||.|..++.+|+. ..+|+|||+++ .++.|+.|++-.|+.++|+++++|+.++.. .... +|+|+++|.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 37999999999999999998 55999999999 999999999999999999999999988742 2122 899999864
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=88.15 Aligned_cols=81 Identities=22% Similarity=0.403 Sum_probs=65.1
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.+.+.....++.+|||||||+|.++..+++.+. +|+++|+++ +++.+++++.. ..+++++++|+.+++++ ++
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--~~ 92 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--DF 92 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--Hc
Confidence 3344445567789999999999999999999864 799999999 99999887643 24699999999987764 56
Q ss_pred e---EEEEecc
Q 015306 191 D---IIISEWM 198 (409)
Q Consensus 191 D---vVvs~~~ 198 (409)
| +|++++.
T Consensus 93 d~~~~vvsNlP 103 (253)
T TIGR00755 93 PKQLKVVSNLP 103 (253)
T ss_pred CCcceEEEcCC
Confidence 6 8888763
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=85.56 Aligned_cols=86 Identities=30% Similarity=0.351 Sum_probs=75.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
.....|.......++..|||||.|||.++..+.+.|+ +|+|+|+++ |+....+++.....+++.+++++|+...++
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-- 121 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-- 121 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--
Confidence 4455666667889999999999999999999999955 999999999 999999998777777899999999988765
Q ss_pred CceeEEEEec
Q 015306 188 TKVDIIISEW 197 (409)
Q Consensus 188 ~~~DvVvs~~ 197 (409)
..||++|++.
T Consensus 122 P~fd~cVsNl 131 (315)
T KOG0820|consen 122 PRFDGCVSNL 131 (315)
T ss_pred cccceeeccC
Confidence 5799999985
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-07 Score=86.55 Aligned_cols=87 Identities=21% Similarity=0.307 Sum_probs=71.7
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC-
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT- 188 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~- 188 (409)
.+.|.......++..|||||+|.|.++..+++.+. +|+|+|+++ ++...++.+. ..++++++++|+....++.-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhc
Confidence 44455556677789999999999999999999955 799999999 9999998875 22569999999999988722
Q ss_pred ceeEEEEecccccc
Q 015306 189 KVDIIISEWMGYFL 202 (409)
Q Consensus 189 ~~DvVvs~~~~~~l 202 (409)
.++.||++. .|.+
T Consensus 95 ~~~~vVaNl-PY~I 107 (259)
T COG0030 95 QPYKVVANL-PYNI 107 (259)
T ss_pred CCCEEEEcC-CCcc
Confidence 789999997 4544
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.1e-07 Score=82.77 Aligned_cols=109 Identities=13% Similarity=0.155 Sum_probs=89.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHH-cC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-C--CCCceeE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-L--PVTKVDI 192 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~-~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~~Dv 192 (409)
....-+||||.||.|...+.+.. .+ ..+|...|.|+ .++..++.++..|+.+.++|.++|+.+.. + -....++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 34567999999999988887776 44 36899999999 99999999999999998899999998753 1 1366899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++...+...+.....+...+..+.+.+.|||++|..
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 998776555555566777899999999999999954
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-07 Score=82.03 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=80.6
Q ss_pred EEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--------CCCceeEEE
Q 015306 125 VVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------PVTKVDIII 194 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~DvVv 194 (409)
+|||||||||..+..+|+ .+.-+..-.|.++ .....+..+...++++...-+..|+..... ..++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999998 6667888899999 777777777778877656667777766532 235899999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+..|.+.. .......++....++|++||.++.
T Consensus 108 ~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 108 CINMLHIS-PWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred ehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEE
Confidence 97665544 345667899999999999999884
|
The function of this family is unknown. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.5e-07 Score=90.30 Aligned_cols=93 Identities=28% Similarity=0.281 Sum_probs=64.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
++.+.+.+.+.....++ .|||+-||.|.+++.+|+. +++|+|||.++ +++.|++++..|++.+ ++|+.++++++.
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCC
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhH
Confidence 44555555555555555 8999999999999999997 56999999999 9999999999999965 999998876642
Q ss_pred ---------------CCCCceeEEEEecccccc
Q 015306 185 ---------------LPVTKVDIIISEWMGYFL 202 (409)
Q Consensus 185 ---------------~~~~~~DvVvs~~~~~~l 202 (409)
+....+|+|+.+|+-.++
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 112368999998865444
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-07 Score=96.28 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=87.1
Q ss_pred HHHHHHHHHhccCC-CCCCEEEEEcCCCChHHHHHHHcC-----------------------------------------
Q 015306 107 TKSYQNVIYQNKFL-FKDKVVLDVGAGTGILSLFCAKAG----------------------------------------- 144 (409)
Q Consensus 107 ~~~~~~~l~~~~~~-~~~~~VLDlGcG~G~l~~~la~~g----------------------------------------- 144 (409)
.+.+..+|...... .++..++|.+||+|.+.+.+|...
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34566666655554 567899999999999998887621
Q ss_pred --CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCceeEEEEecccccc--cChhHHHHHHHHHHh
Q 015306 145 --AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYFL--LFENMLNTVLYARDK 217 (409)
Q Consensus 145 --~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~DvVvs~~~~~~l--~~~~~~~~~l~~~~~ 217 (409)
..+++|+|+++ +++.|++|+..+|+.+.+++.++|+.++..+ .+++|+|++++. |.. .....+..+...+..
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP-Yg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP-YGERLGEEPALIALYSQLGR 332 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC-CcCccCchHHHHHHHHHHHH
Confidence 12699999999 9999999999999988899999999988654 247999999973 432 223445555555444
Q ss_pred ccc---CCeEE
Q 015306 218 WLV---DDGIV 225 (409)
Q Consensus 218 ~Lk---pgG~l 225 (409)
.|+ +|+.+
T Consensus 333 ~lk~~~~g~~~ 343 (702)
T PRK11783 333 RLKQQFGGWNA 343 (702)
T ss_pred HHHHhCCCCeE
Confidence 444 67654
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-07 Score=82.97 Aligned_cols=107 Identities=13% Similarity=0.206 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCCC----hHHHHHHHc---CC---CEEEEEecHH-HHHHHHHHHH--------------H-----c----
Q 015306 122 KDKVVLDVGAGTG----ILSLFCAKA---GA---AHVYAVECSQ-MANMAKQIVE--------------A-----N---- 167 (409)
Q Consensus 122 ~~~~VLDlGcG~G----~l~~~la~~---g~---~~V~~vD~s~-~~~~a~~~~~--------------~-----~---- 167 (409)
+..+|+..||++| .+++.+.+. .. -+++|+|+|+ +++.|++-.- . .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4579999999999 566666662 12 3899999999 9999976210 0 0
Q ss_pred ----CCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 168 ----GFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 168 ----~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
.+.++|+|.+.|+.+...+.+.||+|+|..+.-++ .......+++.+.+.|+|||.++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 11257999999998833345899999997543333 44566899999999999999998553
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.4e-07 Score=83.48 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCC---CCcEEEEEcccccccCC-CC-ceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGF---SNVITVLKGKIEEIELP-VT-KVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~~~-~~-~~DvV 193 (409)
..+++||-||.|.|..+..+.+.. ..+|+.||+++ +++.|++.+..... +.+++++.+|...+--. .+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 367899999999999999999865 67999999999 99999998775432 36899999999876422 24 89999
Q ss_pred EEecccccccChh-HHHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+.......... .-..+++.+.+.|+|||+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 9976432111111 1257889999999999998843
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.7e-07 Score=75.12 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=83.2
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--- 184 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 184 (409)
.+.+........|.-|||+|.|||.++..+.++| ...++++|.|+ ......+... .+.++++|+.++.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l 110 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHH
Confidence 3444555666788899999999999999999987 44899999999 8888777653 2679999998876
Q ss_pred --CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 --~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....||.|+|....- .......-++++.+...|.+||.++-
T Consensus 111 ~e~~gq~~D~viS~lPll-~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 111 GEHKGQFFDSVISGLPLL-NFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred hhcCCCeeeeEEeccccc-cCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 3357899999963211 11222345778888889999999873
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.1e-08 Score=85.64 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=83.4
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
...++|||||.|.++..+...|..+++-+|.|- |++.++.. +.+++ .+....+|-+.+++.+.++|+|++++-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSls--- 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLS--- 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhh---
Confidence 457999999999999999998899999999999 99988763 33443 267788899999998899999999754
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++..+++..+..++..|||+|.+|-
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchh
Confidence 55567788888999999999999883
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.2e-07 Score=85.63 Aligned_cols=106 Identities=15% Similarity=0.188 Sum_probs=78.6
Q ss_pred CCEEEEEcCCCC----hHHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHH------------------H--------
Q 015306 123 DKVVLDVGAGTG----ILSLFCAKA-G----AAHVYAVECSQ-MANMAKQIVE------------------A-------- 166 (409)
Q Consensus 123 ~~~VLDlGcG~G----~l~~~la~~-g----~~~V~~vD~s~-~~~~a~~~~~------------------~-------- 166 (409)
..+|+..||+|| .+++.+.+. + ..+|+|+|+|+ +++.|++-.- .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999 667777663 2 24799999999 9999987420 0
Q ss_pred ----cCCCCcEEEEEcccccccCC-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 167 ----NGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 167 ----~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..+.+.|+|.+.|+.+.+++ .+.||+|+|..+..++ .......++..+.+.|+|||+++...
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 01336688888998875433 5789999996543333 34567899999999999999988554
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-07 Score=81.94 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=59.7
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
...+.++|. ...++.+|.|+|||.+.++..+. . ..+|...|+-. .+ + .++.+|+..+|++
T Consensus 60 vd~iI~~l~---~~~~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva----------~n---~--~Vtacdia~vPL~ 119 (219)
T PF05148_consen 60 VDVIIEWLK---KRPKSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVA----------PN---P--RVTACDIANVPLE 119 (219)
T ss_dssp HHHHHHHHC---TS-TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS---T--TEEES-TTS-S--
T ss_pred HHHHHHHHH---hcCCCEEEEECCCchHHHHHhcc-c-CceEEEeeccC----------CC---C--CEEEecCccCcCC
Confidence 344555554 23456799999999999985543 2 23799999854 11 2 3677999999999
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++++|++|+-.. |.+ .++..++.+..|+|||||.+...
T Consensus 120 ~~svDv~VfcLS---LMG-Tn~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 120 DESVDVAVFCLS---LMG-TNWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp TT-EEEEEEES------S-S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceeEEEEEhh---hhC-CCcHHHHHHHHheeccCcEEEEE
Confidence 999999998431 222 46778999999999999998743
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.4e-07 Score=82.71 Aligned_cols=102 Identities=20% Similarity=0.069 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEcccccccCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
...++||-||.|.|..+..+++... +|+-||+++ +++.+++.+... ++ +.|++++.. +. ....++||+||.+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEc
Confidence 4568999999999999999999864 999999999 999999965532 12 356777752 21 1123789999987
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEccCCceEE
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (409)
.. ..+.+.+.+++.|+|||+++.+..+.+.
T Consensus 147 s~--------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 147 QE--------PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred CC--------CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 42 1246778899999999999987766554
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-06 Score=79.12 Aligned_cols=105 Identities=24% Similarity=0.266 Sum_probs=84.0
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CC
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VT 188 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~ 188 (409)
|...+...||.+|||-|+|+|.++..+++. +-.+++..|+.+ ..+.|++.++..++++++++.+.|+...-+. ..
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 444567899999999999999999999994 467999999999 9999999999999999999999999887654 46
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCe-EEE
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG-IVL 226 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG-~li 226 (409)
.+|.|+.+++ .+-..+-.+.+.||.+| +++
T Consensus 177 ~aDaVFLDlP--------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 177 KADAVFLDLP--------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred ccceEEEcCC--------ChhhhhhhhHHHhhhcCceEE
Confidence 8999998653 22222333445787666 444
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-06 Score=75.78 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHH-cCCC--EEEEEecHH-HHHHHHHHHHHcC--------C-CCcEEEEEcccccccC
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAK-AGAA--HVYAVECSQ-MANMAKQIVEANG--------F-SNVITVLKGKIEEIEL 185 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~-~g~~--~V~~vD~s~-~~~~a~~~~~~~~--------~-~~~i~~~~~d~~~~~~ 185 (409)
.+.||.+.||+|+|+|.|+-++++ -|+. .++|||.-+ +++.+++++...- + ..++.++.+|......
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 368999999999999999999997 3432 349999999 9999999987643 1 1457889999998887
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+..+||.|.+-. ....+.+++...|++||.++
T Consensus 159 e~a~YDaIhvGA---------aa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 159 EQAPYDAIHVGA---------AASELPQELLDQLKPGGRLL 190 (237)
T ss_pred ccCCcceEEEcc---------CccccHHHHHHhhccCCeEE
Confidence 778999999732 11233344456677777655
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-06 Score=77.11 Aligned_cols=109 Identities=20% Similarity=0.181 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCce
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 190 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 190 (409)
...++++||||.=||.-++..|.+ + ..+|+++|+++ ..+.+.+..+..|...+|+++++++.+.- .+.+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 467889999999999888888874 2 55999999999 99999999999999999999999987632 235889
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (409)
|+++.+. ...........+.++||+||+++....-.+.
T Consensus 151 DfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 9999742 1233346777888999999999976544333
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=77.21 Aligned_cols=106 Identities=18% Similarity=0.267 Sum_probs=64.5
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHH-------HcCC-CCcEEEEEcccccccCC
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVE-------ANGF-SNVITVLKGKIEEIELP 186 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~~~~ 186 (409)
...+.++.+.+|||||.|...+.+|. .+..+++|||+.+ ..+.|+.... ..|. ..++++.++|+.+.+..
T Consensus 37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp HTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred HhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence 35577889999999999999887776 6888899999999 8877765433 2333 25688999998765421
Q ss_pred ---CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 187 ---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 ---~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
-...|+|+++.. ...+. +...+......||+|.++|
T Consensus 117 ~~~~s~AdvVf~Nn~---~F~~~-l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 117 KDIWSDADVVFVNNT---CFDPD-LNLALAELLLELKPGARII 155 (205)
T ss_dssp HHHGHC-SEEEE--T---TT-HH-HHHHHHHHHTTS-TT-EEE
T ss_pred hhhhcCCCEEEEecc---ccCHH-HHHHHHHHHhcCCCCCEEE
Confidence 146899999753 33434 4344466667889999887
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.4e-06 Score=78.37 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--------------------------------
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------------------------------- 167 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------------------------------- 167 (409)
....+||--|||.|.++..+|..|. .+.|.|.|- |+-...-.+...
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3457999999999999999999988 899999999 876555443320
Q ss_pred -------CCCCcEEEEEcccccccCCC---CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 168 -------GFSNVITVLKGKIEEIELPV---TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 168 -------~~~~~i~~~~~d~~~~~~~~---~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
....++....+|+.++-.+. ++||+|++. +++....++-..++.+.++|||||..|
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEE
Confidence 01234666667777765444 699999984 556666778899999999999999877
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-06 Score=87.23 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~ 196 (409)
..+..+||||||.|.+...+|+ .+...++|+|+.. .+..+.+.+...++.| +.++..|+..+. ++++++|-|+..
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEE
Confidence 3467999999999999998888 5777999999999 7777777778888865 888988886443 566889999986
Q ss_pred ccccccc--Chh---HHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLL--FEN---MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~--~~~---~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+-..- |.. .-+.++..+.++|||||.+...
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 5433221 111 1268889999999999998754
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-06 Score=80.91 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=67.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
..+|.++|||||++|.++..+++.|+ +|+|||..++.... ... .+|+.+..|...+..+.+.+|+++|++.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MDT---GQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hCC---CCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 46899999999999999999999988 99999987743322 112 4688888888776543578999999875
Q ss_pred ccccChhHHHHHHHHHHhcccCC
Q 015306 200 YFLLFENMLNTVLYARDKWLVDD 222 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lkpg 222 (409)
..+..+.+-+.++|..|
T Consensus 280 ------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ------cCHHHHHHHHHHHHhcC
Confidence 34556667777788665
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.8e-06 Score=79.88 Aligned_cols=115 Identities=21% Similarity=0.115 Sum_probs=88.9
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC---CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCce
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG---AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g---~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 190 (409)
+...+|.+|||++++.|.=+..+++.. ...|+|+|.++ -++..++++...|+.+ +.+++.|...+. ...++|
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcC
Confidence 567899999999999999999888853 24679999999 9999999999999977 788888876543 222369
Q ss_pred eEEEEecccccccC------------h-------hHHHHHHHHHHhcccCCeEEEccCCceE
Q 015306 191 DIIISEWMGYFLLF------------E-------NMLNTVLYARDKWLVDDGIVLPDKASLY 233 (409)
Q Consensus 191 DvVvs~~~~~~l~~------------~-------~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (409)
|.|+.+...+...- . ....+++....++|||||.++-+++++.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 99999754332210 0 1125788888999999999998877643
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-06 Score=76.05 Aligned_cols=107 Identities=24% Similarity=0.294 Sum_probs=78.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcE-EEEEcccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI-TVLKGKIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i-~~~~~d~~~~~~~ 186 (409)
.+..++....-..++++|||||+.||.++..+.+.|+++|+|+|..- .+..--++ +.++ .+-..+++.+...
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHH
Confidence 55666666666789999999999999999999999999999999987 55443221 1233 3445566655422
Q ss_pred --CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 --~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+..|+++++.. + -.+..++..+..+++|+|.+++
T Consensus 140 ~~~~~~d~~v~DvS--F----ISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDVS--F----ISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEee--h----hhHHHHHHHHHHhcCCCceEEE
Confidence 258899999742 1 2456788888899999998773
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=77.67 Aligned_cols=106 Identities=25% Similarity=0.306 Sum_probs=64.3
Q ss_pred HHHHHHhccCCC--CCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 110 YQNVIYQNKFLF--KDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 110 ~~~~l~~~~~~~--~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
+.+.+.+..... ++.+||||||++|.++..+++.+ ..+|+|+|+.++ ... ..+.++++|+.+..
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~ 77 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPEN 77 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEH
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhH
Confidence 344444433233 34899999999999999999987 679999999873 111 23777777776532
Q ss_pred -------CC--CCceeEEEEecccccccC----h----hHHHHHHHHHHhcccCCeEEE
Q 015306 185 -------LP--VTKVDIIISEWMGYFLLF----E----NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 185 -------~~--~~~~DvVvs~~~~~~l~~----~----~~~~~~l~~~~~~LkpgG~li 226 (409)
++ .+++|+|+|+........ + ......+.-+..+|+|||.+|
T Consensus 78 ~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 78 IKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp SHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 11 268999999863222211 1 111233334457899999877
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-06 Score=78.22 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=70.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
..+.+.|.. ......|.|+|||-+.++. .. ...|+..|+-+ -+-.++.+|+.++++++
T Consensus 169 d~ii~~ik~---r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d 226 (325)
T KOG3045|consen 169 DVIIRKIKR---RPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLED 226 (325)
T ss_pred HHHHHHHHh---CcCceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCcCcc
Confidence 344455543 2456789999999998765 22 34799999854 12467889999999999
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+++|++|+-+ + +.+ .++..++.++.|+|++||.+....
T Consensus 227 ~svDvaV~CL--S-LMg-tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 227 ESVDVAVFCL--S-LMG-TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred CcccEEEeeH--h-hhc-ccHHHHHHHHHHHhccCceEEEEe
Confidence 9999999732 1 222 467789999999999999876443
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.3e-06 Score=73.54 Aligned_cols=102 Identities=25% Similarity=0.228 Sum_probs=71.0
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-CC-CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc-------
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE------- 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~-~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 184 (409)
..+..-+.++.+|+|||+-.|.++..+++. |. ..|+|||+.||- .. ..|.++++|+++-+
T Consensus 37 ~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~-~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 37 NEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PI-PGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred HHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cC-CCceEEeeeccCccHHHHHHH
Confidence 334445677899999999999999999994 32 359999998821 12 23999999998864
Q ss_pred -CCCCceeEEEEecccccccC--------hhHHHHHHHHHHhcccCCeEEE
Q 015306 185 -LPVTKVDIIISEWMGYFLLF--------ENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~--------~~~~~~~l~~~~~~LkpgG~li 226 (409)
++...+|+|+|++....-.+ ......+++-...+|+|||.++
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 33456899999865421111 1122344555668999999987
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.6e-07 Score=77.80 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs~ 196 (409)
....|+|.-||.|.-++..|..|. .|++||+++ -+..|+.+++-.|++++|+|+++|+.++. +....+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 567899999999999988888755 899999999 99999999999999999999999998863 444568888876
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeE
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (409)
+. ..+.+-+..-+..+...++|.|.
T Consensus 173 pp---wggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 PP---WGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CC---CCCcchhhhhhhhhhhhcchhHH
Confidence 53 12223333333344455666543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.8e-06 Score=73.36 Aligned_cols=96 Identities=27% Similarity=0.346 Sum_probs=69.0
Q ss_pred EEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccccc
Q 015306 126 VLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (409)
Q Consensus 126 VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~ 203 (409)
|.||||--|.+++.|.+.| +.+++++|+++ -++.|++++...++.++|+++.+|-.+.-.+.+.+|.||...||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 6899999999999999987 56899999999 999999999999999999999999766433323489999876643
Q ss_pred ChhHHHHHHHHHHhcccCCeEEE
Q 015306 204 FENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..+..++.+....++....+|
T Consensus 78 --~lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 78 --ELIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp --HHHHHHHHHTGGGGTT--EEE
T ss_pred --HHHHHHHHhhHHHhccCCeEE
Confidence 345677776666665444444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.5e-06 Score=79.25 Aligned_cols=113 Identities=20% Similarity=0.136 Sum_probs=73.2
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc--------CCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcccccc
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEI 183 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~--------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~ 183 (409)
+.+.....++.+|||.+||+|.+...+.+. ...+++|+|+++ ++..|+-++.-.+.... ..+..+|....
T Consensus 38 ~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~ 117 (311)
T PF02384_consen 38 MVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEN 117 (311)
T ss_dssp HHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTS
T ss_pred HHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccc
Confidence 333345567789999999999998887762 456999999999 99999888776665432 45788887654
Q ss_pred cCC--CCceeEEEEecccccc--cCh----------------hHHHHHHHHHHhcccCCeEEE
Q 015306 184 ELP--VTKVDIIISEWMGYFL--LFE----------------NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 184 ~~~--~~~~DvVvs~~~~~~l--~~~----------------~~~~~~l~~~~~~LkpgG~li 226 (409)
+.. ..+||+|+++++.... ... ..--.++..+.+.|++||++.
T Consensus 118 ~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 118 DKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp HSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 432 4789999999743222 000 011246777789999999854
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.8e-06 Score=79.39 Aligned_cols=77 Identities=19% Similarity=0.183 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCC--Cce
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV--TKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~--~~~ 190 (409)
....++..+||.+||.|..+..+++.. ..+|+|+|.++ +++.|++.+.. .++++++++++.++. ++. .++
T Consensus 15 L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~v 91 (296)
T PRK00050 15 LAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKV 91 (296)
T ss_pred hCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCcc
Confidence 445678899999999999999999963 46999999999 99999988754 367999999999874 222 279
Q ss_pred eEEEEec
Q 015306 191 DIIISEW 197 (409)
Q Consensus 191 DvVvs~~ 197 (409)
|.|++++
T Consensus 92 DgIl~DL 98 (296)
T PRK00050 92 DGILLDL 98 (296)
T ss_pred CEEEECC
Confidence 9999864
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.6e-07 Score=87.59 Aligned_cols=119 Identities=15% Similarity=0.239 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhccCC--CCC--CEEEEEcCCCChHHHHHHHcCCCEEEEEe---cHH-HHHHHHHHHHHcCCCCcEEEEE
Q 015306 106 RTKSYQNVIYQNKFL--FKD--KVVLDVGAGTGILSLFCAKAGAAHVYAVE---CSQ-MANMAKQIVEANGFSNVITVLK 177 (409)
Q Consensus 106 r~~~~~~~l~~~~~~--~~~--~~VLDlGcG~G~l~~~la~~g~~~V~~vD---~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (409)
....|.+.|.+.... ..+ .++||+|||+|.++..+...+. .+..+- ..+ .+..|. +.|++..+. .
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfal----eRGvpa~~~--~ 169 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFAL----ERGVPAMIG--V 169 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhh----hcCcchhhh--h
Confidence 345677777665544 333 4799999999999999999865 233332 223 344433 345543221 2
Q ss_pred cccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceE
Q 015306 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (409)
Q Consensus 178 ~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (409)
.-...++++.+.||+|.|.-.. ......-..++-++.|+|+|||+++-+....+
T Consensus 170 ~~s~rLPfp~~~fDmvHcsrc~--i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 170 LGSQRLPFPSNAFDMVHCSRCL--IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hccccccCCccchhhhhccccc--ccchhcccceeehhhhhhccCceEEecCCccc
Confidence 2345688889999999995221 11111113467788999999999998777666
|
; GO: 0008168 methyltransferase activity |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.6e-06 Score=76.59 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=77.5
Q ss_pred CCCEEEEEcCCCC----hHHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHH-----cC-----------------
Q 015306 122 KDKVVLDVGAGTG----ILSLFCAKAG------AAHVYAVECSQ-MANMAKQIVEA-----NG----------------- 168 (409)
Q Consensus 122 ~~~~VLDlGcG~G----~l~~~la~~g------~~~V~~vD~s~-~~~~a~~~~~~-----~~----------------- 168 (409)
..-+|+-+||+|| .+++.+.+.+ .-+|+|+|+|. +++.|+.-.-. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4679999999999 6777777743 35899999999 99998753211 11
Q ss_pred ------CCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 169 ------FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 169 ------~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+...|.|...|+.+.....+.||+|+|..+.-++ .+.....++...+..|+|||.++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1245777777776666233789999996443333 3456678999999999999998854
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.7e-06 Score=76.35 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=67.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV- 187 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~- 187 (409)
..+.|.+.....++..|||||+|.|.++..+++.+ ++|+++|.++ +++..++.+.. ..+++++.+|+..+..+.
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS---NPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT---CSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh---cccceeeecchhccccHHh
Confidence 33444444455688999999999999999999987 7999999999 99999887652 356999999999987663
Q ss_pred --CceeEEEEecc
Q 015306 188 --TKVDIIISEWM 198 (409)
Q Consensus 188 --~~~DvVvs~~~ 198 (409)
.....|+++..
T Consensus 94 ~~~~~~~vv~NlP 106 (262)
T PF00398_consen 94 LKNQPLLVVGNLP 106 (262)
T ss_dssp CSSSEEEEEEEET
T ss_pred hcCCceEEEEEec
Confidence 46788888853
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.1e-06 Score=84.77 Aligned_cols=78 Identities=31% Similarity=0.359 Sum_probs=68.0
Q ss_pred hHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015306 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (409)
Q Consensus 104 ~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (409)
....+.+...+........++.+||+.||||.+++.+|+. +++|+|||+++ .++.|++++..||+++ .+|+++.+++
T Consensus 365 t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~ 442 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAED 442 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhh
Confidence 3445566677777788888999999999999999999885 78999999999 9999999999999976 9999997777
Q ss_pred c
Q 015306 183 I 183 (409)
Q Consensus 183 ~ 183 (409)
+
T Consensus 443 ~ 443 (534)
T KOG2187|consen 443 L 443 (534)
T ss_pred c
Confidence 5
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-05 Score=65.20 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=61.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHH-----cCCCEEEEEecHH-HHHHHHHHHHHcC--CCCcEEEEEcccccccCCCCcee
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAK-----AGAAHVYAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~-----~g~~~V~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
..+..+|+|+|||.|.++..++. ....+|++||.++ .++.+.+.....+ +..++.+..+++.+... ....+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 36778999999999999999999 5566999999999 9999999888777 55567788777765533 36788
Q ss_pred EEEE
Q 015306 192 IIIS 195 (409)
Q Consensus 192 vVvs 195 (409)
++++
T Consensus 102 ~~vg 105 (141)
T PF13679_consen 102 ILVG 105 (141)
T ss_pred EEEE
Confidence 8886
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.9e-06 Score=80.85 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=93.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
....++..++|+|||.|.....++..+...++|++.++ .+..+.......++.++..++.+|+-..++++..||.+-+
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~- 184 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRF- 184 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEE-
Confidence 34567779999999999999999998777999999999 8888888887778888888899999999999999999998
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.....+.+....++.++.+.++|||.++-.
T Consensus 185 --ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 --LEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred --EeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 344666688889999999999999998843
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-05 Score=71.92 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=68.2
Q ss_pred HHhccCCCCCC--EEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc------C--CCCcEEEEEccccc
Q 015306 114 IYQNKFLFKDK--VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN------G--FSNVITVLKGKIEE 182 (409)
Q Consensus 114 l~~~~~~~~~~--~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~------~--~~~~i~~~~~d~~~ 182 (409)
|.+...+.++. +|||+-+|+|..++.++..|+. |+++|-++ +....++.+... + +..+++++++|..+
T Consensus 78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 33445556766 9999999999999999999885 99999999 999998888874 2 23569999999988
Q ss_pred ccCC-CCceeEEEEeccc
Q 015306 183 IELP-VTKVDIIISEWMG 199 (409)
Q Consensus 183 ~~~~-~~~~DvVvs~~~~ 199 (409)
+--. ..+||+|+.++|.
T Consensus 157 ~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 157 ALTDITPRPQVVYLDPMF 174 (250)
T ss_pred HHhhCCCCCcEEEECCCC
Confidence 6421 2479999999874
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-05 Score=74.74 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHH--HH---cCC-CCcEEEEEcccccccC-CCCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIV--EA---NGF-SNVITVLKGKIEEIEL-PVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~--~~---~~~-~~~i~~~~~d~~~~~~-~~~~~D 191 (409)
..-.+||-+|.|.|.....+.+.+ ..+++-||.+| |++.++++. .. +.+ +.+++++..|+.++-- ....||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 344689999999999999999986 88999999999 999998433 22 122 3689999999988752 246899
Q ss_pred EEEEecccccccChh--HHHHHHHHHHhcccCCeEEEccCCceEEEE
Q 015306 192 IIISEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDKASLYLTA 236 (409)
Q Consensus 192 vVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lip~~~~~~~~~ 236 (409)
+||.+..+.--...+ .-..+..-+.+.|+++|.++.+..+.|..|
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp 414 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP 414 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC
Confidence 999875432111111 113566667899999999998766655443
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.2e-05 Score=74.40 Aligned_cols=114 Identities=20% Similarity=0.170 Sum_probs=87.6
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~Dv 192 (409)
....++.+|||+++|.|.=+..+++. + ...|+|+|+++ -+...++++...|+.+ +.++..|..... .....||.
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccch
Confidence 34678899999999999999988883 3 56999999999 9999999999999865 788878887763 23356999
Q ss_pred EEEeccccccc----Ch--------h-------HHHHHHHHHHhcc----cCCeEEEccCCce
Q 015306 193 IISEWMGYFLL----FE--------N-------MLNTVLYARDKWL----VDDGIVLPDKASL 232 (409)
Q Consensus 193 Vvs~~~~~~l~----~~--------~-------~~~~~l~~~~~~L----kpgG~lip~~~~~ 232 (409)
|+.+...+... +. . ....+++...+++ ||||+++-+++++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 99975433221 11 0 1247788889999 9999999776653
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.2e-05 Score=72.81 Aligned_cols=78 Identities=24% Similarity=0.235 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCC-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEccccccc-----CCCCceeEEE
Q 015306 123 DKVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIE-----LPVTKVDIII 194 (409)
Q Consensus 123 ~~~VLDlGcG~G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~-----~~~~~~DvVv 194 (409)
..++||||||.. +..+..++...-+++|.|+++ .++.|++++..| ++.++|+++...-...- .+.+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 458999999986 556666663244999999999 999999999999 99999999876433221 2247899999
Q ss_pred Eecccc
Q 015306 195 SEWMGY 200 (409)
Q Consensus 195 s~~~~~ 200 (409)
|++..|
T Consensus 183 CNPPFy 188 (299)
T PF05971_consen 183 CNPPFY 188 (299)
T ss_dssp E-----
T ss_pred cCCccc
Confidence 998533
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00012 Score=65.47 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=72.1
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (409)
..+.+|.+||-||+.+|.....++. .| ...|+|||.|+ ..+..-..++.. .+|-.+-.|+.... .--+.+|
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccccc
Confidence 4678899999999999999999988 55 66999999999 766555555544 45888888887643 1136899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+++.. ......-++..+..+||+||.++.
T Consensus 146 vI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 146 VIFQDVA-----QPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEecCC-----ChHHHHHHHHHHHhhccCCcEEEE
Confidence 9999742 234556677778899999999873
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6e-05 Score=66.45 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~ 197 (409)
.+|.+||.||-|-|+..-.+.++...+-+.||..+ +++..++..-.. .++|.++.+..++.. ++++.||-|+-+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEeec
Confidence 78999999999999999999888766778999999 988877643221 256888888888764 5678899999754
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. ...-.++..+.+.+.++|||+|++-.
T Consensus 178 y---~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 178 Y---SELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred h---hhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 2 23335666777888999999998753
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.4e-05 Score=66.09 Aligned_cols=58 Identities=33% Similarity=0.474 Sum_probs=50.3
Q ss_pred EEEEEcCCCChHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 125 VVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
+|||+|||.|.++..+++.+. .+|+++|+++ +.+.+++++..+++.+ ++++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeCC
Confidence 489999999999999999754 3899999999 9999999999998865 88888777653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.2e-06 Score=66.03 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=44.6
Q ss_pred EEEcCCCChHHHHHHHc----CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEecccc
Q 015306 127 LDVGAGTGILSLFCAKA----GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGY 200 (409)
Q Consensus 127 LDlGcG~G~l~~~la~~----g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~~~~ 200 (409)
||||+..|..+..+++. +..+++++|..+..+.+++.++..++.++++++.++..+.- ++.+++|+|+.+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 68999999888887763 22379999998844455566666677788999999997652 22479999998642
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+........+..+.+.|+|||+++...
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 122344566777889999999998654
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00016 Score=60.75 Aligned_cols=98 Identities=26% Similarity=0.353 Sum_probs=67.0
Q ss_pred EEEEcCCCChHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc--ccCCC-CceeEEEEeccc
Q 015306 126 VLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPV-TKVDIIISEWMG 199 (409)
Q Consensus 126 VLDlGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~~DvVvs~~~~ 199 (409)
++|+|||+|... .++.... ..++++|.++ ++..++......+. ..+.+...+... +++.. ..+|++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLV- 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeee-
Confidence 999999999877 4444322 3899999999 88885554433211 116788888876 56664 48999943322
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..... ....+..+.+.|+|+|.++...
T Consensus 129 --~~~~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 129 --LHLLP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred --hhcCC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 11112 6778888999999999887543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.90 E-value=5e-05 Score=78.44 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHcC---------CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAG---------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P 186 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g---------~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~ 186 (409)
...+|||.|||+|.+...+++.. ...++|+|+++ ++..++.++...+. ..+.+...|.....+ .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45699999999999988887632 14799999999 99999998877652 125556555433211 1
Q ss_pred CCceeEEEEecc
Q 015306 187 VTKVDIIISEWM 198 (409)
Q Consensus 187 ~~~~DvVvs~~~ 198 (409)
.++||+||++|+
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999974
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=68.54 Aligned_cols=105 Identities=15% Similarity=0.233 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCC-hHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHH-HcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTG-ILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVE-ANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G-~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
.+++|+=||||.= ..++.+++ .| ...|+++|.++ +++.+++.+. ..+++.+++|+.+|..+...+-..||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 3469999999975 44566665 34 45899999999 9999999888 5678889999999998876555789999875
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+- ......-..++..+.+.++||+.++..
T Consensus 200 alV--g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALV--GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT---S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhc--ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 321 112235678999999999999988843
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00022 Score=67.26 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=67.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
....|.+......+.+|||+|||+|..+..+.. . ...+++++|.|+ |++.++..+............ ........+
T Consensus 21 vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~ 99 (274)
T PF09243_consen 21 VLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFLP 99 (274)
T ss_pred HHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhccccc
Confidence 334444444556778999999999976665555 2 366899999999 999999887654321111111 111111112
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccC
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVD 221 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkp 221 (409)
..+.|+|++..+..-+.. .....+++.+.+.+.+
T Consensus 100 ~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPS-AARAELVRSLWNKTAP 133 (274)
T ss_pred CCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC
Confidence 234499998654444444 5556777777666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=59.02 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
..+++|+|||++-|..++.++-.|+++|+++|+++ ..+..+++++.+.+-++..-.. +++-.-+.||+.+.+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNGEYEDVDIFVMD 99 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccccCCCcceEEEE
Confidence 57899999999999999999999999999999999 9999999998876544332222 233334789998864
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00013 Score=60.83 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=57.9
Q ss_pred EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEecccccccChh-------HHHHHHHHHH
Q 015306 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFEN-------MLNTVLYARD 216 (409)
Q Consensus 147 ~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~~~~~l~~~~-------~~~~~l~~~~ 216 (409)
+|+|+|+.+ +++.+++++...++.++++++...-+.+. .+.+++|+++.+. ||...+.. .--..++++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 699999999 99999999999999889999999888876 2334899999985 66543321 1234566677
Q ss_pred hcccCCeEEEc
Q 015306 217 KWLVDDGIVLP 227 (409)
Q Consensus 217 ~~LkpgG~lip 227 (409)
++|+|||+++.
T Consensus 80 ~lL~~gG~i~i 90 (140)
T PF06962_consen 80 ELLKPGGIITI 90 (140)
T ss_dssp HHEEEEEEEEE
T ss_pred HhhccCCEEEE
Confidence 89999999873
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.2e-05 Score=66.06 Aligned_cols=113 Identities=21% Similarity=0.278 Sum_probs=77.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCC-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCC--CcEEEEEccccccc-
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIE- 184 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~- 184 (409)
.-.+.+......|++||++|.| +|..++++|. .+...|...|-++ .++..++....|... .++.++.-+.....
T Consensus 18 a~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs 97 (201)
T KOG3201|consen 18 AWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS 97 (201)
T ss_pred HHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH
Confidence 3334444444567899999999 4777777777 5677999999999 999999888776332 22333332222211
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.....||+|++. .+++....-+.+++.+.++|+|.|.-+
T Consensus 98 q~eq~tFDiIlaA---DClFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 98 QQEQHTFDIILAA---DCLFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred HHhhCcccEEEec---cchhHHHHHHHHHHHHHHHhCccccee
Confidence 223589999994 334444566788899999999999754
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=67.82 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=67.2
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC---------------------------C
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF---------------------------S 170 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~---------------------------~ 170 (409)
...+|.++||||||+-+.....|..-+.+++..|.++ ..+..++-++..+- .
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3456789999999997665444443477899999998 77655554433210 0
Q ss_pred CcE-EEEEccccccc-CC-----CCceeEEEEeccccc-ccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 171 NVI-TVLKGKIEEIE-LP-----VTKVDIIISEWMGYF-LLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 171 ~~i-~~~~~d~~~~~-~~-----~~~~DvVvs~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..| .++.+|+...+ +. +++||+|++...... ..........++.+.++|||||.+|.
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 123 37778887754 22 135999998643322 23345567888889999999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00057 Score=60.87 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..+.++.||||--|.++.++.+. .+..+++.|+++ .++.|.+++..+++.+++++..+|....--.+..+|+|+...|
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 35556999999999999999995 478999999999 9999999999999999999999998554334458999998766
Q ss_pred cccccChhHHHHHHHHHHhccc
Q 015306 199 GYFLLFENMLNTVLYARDKWLV 220 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~Lk 220 (409)
|- ..+..++++....|+
T Consensus 95 GG-----~lI~~ILee~~~~l~ 111 (226)
T COG2384 95 GG-----TLIREILEEGKEKLK 111 (226)
T ss_pred cH-----HHHHHHHHHhhhhhc
Confidence 43 344566666555554
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0002 Score=59.34 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
...+..+.+|+|+|.|.+.+.+++.|....+|+|+++ .+.+++-..-..|+.....|...|+-...+.+-.+=+|+.
T Consensus 69 ~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg-- 146 (199)
T KOG4058|consen 69 RGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG-- 146 (199)
T ss_pred cCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee--
Confidence 3355568999999999999999999877899999999 9999999888889988899999999887765434434432
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+..++.+...+..-+..+..++-
T Consensus 147 ------aes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 147 ------AESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred ------hHHHHhhhHHHHHhhCcCCCeEEE
Confidence 345555666666656666666663
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00019 Score=70.94 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=80.5
Q ss_pred CCCC-EEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDK-VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~-~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.+-. ++|-+|||.-.++..+-+.|...|+.+|+|+ .++.+...... . ..-+.+...|+..+.+++++||+|+...-
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-C-CcceEEEEecchhccCCCcceeEEEecCc
Confidence 3444 9999999999999999999999999999999 77766554321 1 13489999999999999999999998654
Q ss_pred cccc-cChh------HHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFL-LFEN------MLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l-~~~~------~~~~~l~~~~~~LkpgG~li 226 (409)
...+ ..+. .....+..+.++|++||+.+
T Consensus 124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 4333 2222 23456778899999999965
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00089 Score=64.23 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=72.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEccccccc--CC----
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIE--LP---- 186 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-----g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~--~~---- 186 (409)
+.++..++|+|||+|.-+..+.+. ...++++||+|. +++.+.+.+....++. .+.-+.+|..+.. ++
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 456779999999999765555442 134799999999 9999998887444432 2444888886641 11
Q ss_pred CCceeEEEEecccccccC--hhHHHHHHHHHHh-cccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLF--ENMLNTVLYARDK-WLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~--~~~~~~~l~~~~~-~LkpgG~lip 227 (409)
.....+++. +|+.+.+ ......+++.+++ .|+|||.++.
T Consensus 154 ~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 154 RSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 134566665 3433333 2345578889988 9999998874
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0003 Score=66.98 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
-...+|+|.|.|.++..+... +.+|-+++++. .+..++..+. .| |+.+.+|+..- . .+.|+|+.-|+.+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~--P~~daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-T--PKGDAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-C--CCcCeEEEEeeccc
Confidence 378999999999999988884 56799999998 6665555543 33 78888898776 3 45779999888666
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.. .+..++++.|...|+|||.+|.
T Consensus 249 wtD-edcvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 249 WTD-EDCVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred CCh-HHHHHHHHHHHHhCCCCCEEEE
Confidence 654 4566999999999999998873
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=3.8e-05 Score=70.75 Aligned_cols=96 Identities=18% Similarity=0.073 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
..+..++|+|||.|-... ..+...++++|.+. .+..+++. +......+|+..++.+..+||.+++..+.
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhh
Confidence 458899999999985432 12445799999999 88887653 21257889999999988999999998887
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++........+++++.+.|+|||..+
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 888777778899999999999999876
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0007 Score=58.55 Aligned_cols=98 Identities=22% Similarity=0.332 Sum_probs=64.6
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEc-cccccc--------CC
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKG-KIEEIE--------LP 186 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~--------~~ 186 (409)
..+.|+.+|||+||..|.++..+.+. +...|.|||+-.. ... ..++++++ |+++.. +|
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----------~p~-~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----------EPP-EGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----------cCC-CCcccccccccCCHHHHHHHHHhCC
Confidence 44678999999999999999998883 5678999998651 111 22566666 666532 56
Q ss_pred CCceeEEEEecccccc-----cChhHH---HHHHHHHHhcccCCeEEE
Q 015306 187 VTKVDIIISEWMGYFL-----LFENML---NTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l-----~~~~~~---~~~l~~~~~~LkpgG~li 226 (409)
+.++|+|+|++....- .|...+ ..++.-....++|+|.++
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 7899999998643211 111111 122222346678999887
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00062 Score=66.00 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=86.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (409)
+...+|.+|||.++-.|.=+..+|. .+...|+|.|.+. -+...+.++...|+.+ ..+...|..+++ ++ ++||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~-~~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFP-GSFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccC-cccc
Confidence 3467899999999999987777776 3466899999999 9999999999999866 566777777654 44 4899
Q ss_pred EEEEeccccc--ccC-----------------hhHHHHHHHHHHhcccCCeEEEccCCceE
Q 015306 192 IIISEWMGYF--LLF-----------------ENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (409)
Q Consensus 192 vVvs~~~~~~--l~~-----------------~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (409)
-|+.+...+. +.. .....+++.....++++||+++-+++++-
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 9998754333 211 11225667777799999999998877643
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.001 Score=58.33 Aligned_cols=102 Identities=23% Similarity=0.226 Sum_probs=75.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~Dv 192 (409)
..+.+|.+||=||+.+|...-.++. .|...+||||.|+ .....-..+... ++|--+.+|+.... .--+.+|+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccE
Confidence 4678899999999999999999988 6777899999999 665555544443 45777888886543 11367999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+.+.. -....+-+...+..+||+||.++.
T Consensus 149 iy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 149 IYQDVA-----QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred EEEecC-----CchHHHHHHHHHHHhcccCCeEEE
Confidence 998642 223455667778899999997663
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0005 Score=61.29 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=65.1
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEEecccc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEWMGY 200 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~DvVvs~~~~~ 200 (409)
.++|||||=+...... ..+.-.|++||+++ ..-.+.+.|+.+.++| .++||+|+++.+..
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns---------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNS---------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCC---------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 6999999986543322 34444799999976 1135677888887764 67999999999888
Q ss_pred cccChhHHHHHHHHHHhcccCCeE
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~ 224 (409)
++......-.++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 887777777889999999999998
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=3.7e-05 Score=67.26 Aligned_cols=106 Identities=25% Similarity=0.226 Sum_probs=69.8
Q ss_pred HHHHHHHhccC--CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 109 SYQNVIYQNKF--LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 109 ~~~~~l~~~~~--~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
.|++.+..... ...+.++||+|+|.|-++..++.. ..+|+|.|.|. |....++. +. +.+.. .++.-
T Consensus 97 QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y-nVl~~-----~ew~~ 165 (288)
T KOG3987|consen 97 QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY-NVLTE-----IEWLQ 165 (288)
T ss_pred HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC-ceeee-----hhhhh
Confidence 45555542211 234579999999999999988876 55899999999 98877653 21 11111 11211
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccC-CeEEEcc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVD-DGIVLPD 228 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~lip~ 228 (409)
.+-++|+|.|- ..+..--++-++++.++.+|+| +|++|.+
T Consensus 166 t~~k~dli~cl---NlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 166 TDVKLDLILCL---NLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred cCceeehHHHH---HHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 23579999983 2233334556888999999998 8887743
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.005 Score=55.96 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=64.1
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCc
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTK 189 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~ 189 (409)
+........|++||-||-.. ..++.++. ...++|+.+|+++ +++..++.+...|++ |+.++.|+.+--.+ .++
T Consensus 36 ~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~ 112 (243)
T PF01861_consen 36 LMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGK 112 (243)
T ss_dssp HHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-
T ss_pred HHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcC
Confidence 33335557899999999776 56666666 4477999999999 999999999999986 99999999874222 489
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCe
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG 223 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG 223 (409)
||+++++|+ +-+ .-+.-++......||..|
T Consensus 113 fD~f~TDPP-yT~---~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 113 FDVFFTDPP-YTP---EGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp BSEEEE----SSH---HHHHHHHHHHHHTB-STT
T ss_pred CCEEEeCCC-CCH---HHHHHHHHHHHHHhCCCC
Confidence 999999984 322 556677777778887655
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0023 Score=59.88 Aligned_cols=100 Identities=21% Similarity=0.196 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEE---E----------------------
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITV---L---------------------- 176 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~---~---------------------- 176 (409)
..+||--|||.|.|+..++..|. .+-|=|.|- |+-...-.+.....++.+++ +
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 45899999999999999999886 566668888 66544433322222222221 1
Q ss_pred --------------EcccccccCC---CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 177 --------------KGKIEEIELP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 177 --------------~~d~~~~~~~---~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.||+.+.--. .+.||+|+.. +++.....+-..++.+.++|||||+.|
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc---fFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC---FFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEE---EEeechHHHHHHHHHHHHhccCCcEEE
Confidence 1232222111 2469999974 445555677788999999999999987
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=64.67 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcccccccC-CCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIEL-PVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~-~~~~~DvVvs~ 196 (409)
.+.+|||.=+|+|.=++..+.. |..+|++-|+|+ +++.+++|++.|++.+ ++++.+.|+..+-. ....||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4568999999999888877774 678999999999 9999999999999987 79999999988652 34899999988
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++ +.+..+++...+.++.||.+..
T Consensus 129 Pf-------GSp~pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 129 PF-------GSPAPFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp -S-------S--HHHHHHHHHHEEEEEEEEE
T ss_pred CC-------CCccHhHHHHHHHhhcCCEEEE
Confidence 76 3455778888889999999874
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0027 Score=58.86 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=66.4
Q ss_pred CEEEEEcCCCC--hHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----------CC-
Q 015306 124 KVVLDVGAGTG--ILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----------LP- 186 (409)
Q Consensus 124 ~~VLDlGcG~G--~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~- 186 (409)
...||||||-= .....+|+ .+..+|+-||.++ .+..++..+..+.- .+..++++|+.+.. +.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 57999999952 33455555 5677999999999 99999998876642 24899999998843 11
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+.++=+++... .+++..+..+..++..+...|.||..++.+..
T Consensus 149 ~rPVavll~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 149 DRPVAVLLVAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp TS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCeeeeeeee-eccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 25555665544 46666667889999999999999999986543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=59.56 Aligned_cols=81 Identities=25% Similarity=0.209 Sum_probs=50.3
Q ss_pred cCCCCC--CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHH---HHHcCC-----CCcEEEEEccccccc-C
Q 015306 118 KFLFKD--KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQI---VEANGF-----SNVITVLKGKIEEIE-L 185 (409)
Q Consensus 118 ~~~~~~--~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~---~~~~~~-----~~~i~~~~~d~~~~~-~ 185 (409)
..+.++ .+|||.=+|-|.-++.+|..|+ +|+++|-|+ +....+.- ...... ..+|+++++|..++- .
T Consensus 69 ~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 69 VGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp TT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred hCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 444555 4999999999999999998887 899999999 66555433 222221 157999999998853 3
Q ss_pred CCCceeEEEEeccc
Q 015306 186 PVTKVDIIISEWMG 199 (409)
Q Consensus 186 ~~~~~DvVvs~~~~ 199 (409)
+..+||+|..++|.
T Consensus 148 ~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 148 PDNSFDVVYFDPMF 161 (234)
T ss_dssp HSS--SEEEE--S-
T ss_pred cCCCCCEEEECCCC
Confidence 45899999999884
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0038 Score=59.28 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=64.4
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCce
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (409)
....++..++|.=+|.|..+..+++. +..+|+|+|.++ +++.+++.+... .+++++++++..++. .+..++
T Consensus 16 L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~~v 93 (305)
T TIGR00006 16 LNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVTKI 93 (305)
T ss_pred cCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCCcc
Confidence 44568889999999999999999984 457999999999 999999988653 468999999998864 123579
Q ss_pred eEEEEec
Q 015306 191 DIIISEW 197 (409)
Q Consensus 191 DvVvs~~ 197 (409)
|.|+.+.
T Consensus 94 DgIl~DL 100 (305)
T TIGR00006 94 DGILVDL 100 (305)
T ss_pred cEEEEec
Confidence 9999864
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.005 Score=56.31 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=58.3
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (409)
.+.+.+.+.. ...+..+|+|||||.=-+++..... +...++|+|++. +++.....+...++. .++...|+....
T Consensus 92 Ld~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 92 LDEFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP 167 (251)
T ss_dssp HHHHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH
T ss_pred HHHHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC
Confidence 3344444442 3455789999999999888877663 345999999999 999999999888875 566666776654
Q ss_pred CCCCceeEEEE
Q 015306 185 LPVTKVDIIIS 195 (409)
Q Consensus 185 ~~~~~~DvVvs 195 (409)
. ....|+.+.
T Consensus 168 ~-~~~~DlaLl 177 (251)
T PF07091_consen 168 P-KEPADLALL 177 (251)
T ss_dssp T-TSEESEEEE
T ss_pred C-CCCcchhhH
Confidence 4 378999986
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00038 Score=64.50 Aligned_cols=94 Identities=24% Similarity=0.311 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCChHHH-HHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 122 KDKVVLDVGAGTGILSL-FCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~-~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.+..|.|+-+|-|.+++ .+..+|++.|+|+|.+| .++..+++++.|+..++..++.+|-+...+. ..+|-|...++
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~-~~AdrVnLGLl- 271 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR-LRADRVNLGLL- 271 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc-ccchheeeccc-
Confidence 45799999999999999 78889999999999999 9999999999999888888888888876654 88999986544
Q ss_pred ccccChhHHHHHHHHHHhcccCCe
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDG 223 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG 223 (409)
...+....... ++|||.|
T Consensus 272 --PSse~~W~~A~----k~Lk~eg 289 (351)
T KOG1227|consen 272 --PSSEQGWPTAI----KALKPEG 289 (351)
T ss_pred --cccccchHHHH----HHhhhcC
Confidence 33344444333 5666644
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0012 Score=62.38 Aligned_cols=82 Identities=24% Similarity=0.236 Sum_probs=66.1
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHH-------HHHHHHHHcCC-CCcEEEEEcccccccCC-C
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MAN-------MAKQIVEANGF-SNVITVLKGKIEEIELP-V 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~-------~a~~~~~~~~~-~~~i~~~~~d~~~~~~~-~ 187 (409)
....+|+.|+|---|||.+...+|+.|+ .|+|.|++- ++. -.+.|+++.|. +.-+.++.+|...-++. .
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4568999999999999999999999988 999999998 776 34667777774 34467888888876644 5
Q ss_pred CceeEEEEeccccc
Q 015306 188 TKVDIIISEWMGYF 201 (409)
Q Consensus 188 ~~~DvVvs~~~~~~ 201 (409)
..||.|||++ .|.
T Consensus 283 ~~fDaIvcDP-PYG 295 (421)
T KOG2671|consen 283 LKFDAIVCDP-PYG 295 (421)
T ss_pred ceeeEEEeCC-Ccc
Confidence 6899999997 353
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0061 Score=54.33 Aligned_cols=119 Identities=17% Similarity=0.257 Sum_probs=63.0
Q ss_pred hcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH----c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE
Q 015306 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (409)
Q Consensus 101 l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~----~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (409)
++....+-.|.+.|.+ .++..|+|+|.-.|.-+++.|. . +..+|+|||++- .... +..+...+.++|+
T Consensus 15 ~q~P~Dm~~~qeli~~----~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~ 88 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWE----LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRIT 88 (206)
T ss_dssp SS-HHHHHHHHHHHHH----H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEE
T ss_pred hcCHHHHHHHHHHHHH----hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceE
Confidence 3444455566666664 3678999999999988777765 2 467999999964 2221 1223345557899
Q ss_pred EEEcccccccC--------CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 175 VLKGKIEEIEL--------PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 175 ~~~~d~~~~~~--------~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++++|..+... ......+|+-+.- -.+ ...-..++....++++|+++|...
T Consensus 89 ~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~---H~~-~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 89 FIQGDSIDPEIVDQVRELASPPHPVLVILDSS---HTH-EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEES-SSSTHHHHTSGSS----SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred EEECCCCCHHHHHHHHHhhccCCceEEEECCC---ccH-HHHHHHHHHhCccCCCCCEEEEEe
Confidence 99999977541 1234557765431 112 234455666889999999988554
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0034 Score=59.55 Aligned_cols=113 Identities=16% Similarity=0.050 Sum_probs=67.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cC-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCC---
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP--- 186 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--- 186 (409)
..+........+++|||+|.|.|.-...+-. .+ -..++.+|.|+++...-..+..+-...+..+...|+....++
T Consensus 103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 3444445566778899999999876554444 22 457888999994444444444443333344444555443333
Q ss_pred CCceeEEEEecccccc---cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFL---LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l---~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...|++++. .+-+ ..+..+...++.+..++.|||.++.
T Consensus 183 ad~ytl~i~---~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 183 ADLYTLAIV---LDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred cceeehhhh---hhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 245666664 2212 2233445578888899999998774
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0017 Score=64.66 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=67.5
Q ss_pred CEEEEEcCCCChHHHHHHHcCC--CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~--~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
..|+|..+|.|.++..|...+. -.|+-++-...+.. +-+.|+ |-..+.-.+.+..-+.+||+|.++.+...
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v----IydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV----IYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchh----hhhccc---chhccchhhccCCCCcchhheehhhhhhh
Confidence 5799999999999999887752 12333311112222 223354 44555555555544599999999876555
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
....-.+..++-++.|+|+|||.+|...
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEec
Confidence 5555678899999999999999998654
|
; GO: 0008168 methyltransferase activity |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0036 Score=55.96 Aligned_cols=92 Identities=23% Similarity=0.254 Sum_probs=63.6
Q ss_pred CEEEEEcCCCChHHHHHHHc--C------C--CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc--------C
Q 015306 124 KVVLDVGAGTGILSLFCAKA--G------A--AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------L 185 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~--g------~--~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 185 (409)
++|+|+++..|.++..+++. . . +++++||+.+|+. ++. |.-+++|++... |
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------I~G-V~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------IEG-VIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------cCc-eEEeecccCCHhHHHHHHHHh
Confidence 58999999999999999883 1 1 1499999988432 223 777889998754 4
Q ss_pred CCCceeEEEEeccccc--ccC--hh----HHHHHHHHHHhcccCCeEEE
Q 015306 186 PVTKVDIIISEWMGYF--LLF--EN----MLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~--l~~--~~----~~~~~l~~~~~~LkpgG~li 226 (409)
..++.|+|||+..... ++. |- .+...+.-...+|||||.|+
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 5679999999753321 211 11 12233444568999999998
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.013 Score=53.94 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHc-----CCCCcEEEEEccccccc---CCCCc-eeE
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEAN-----GFSNVITVLKGKIEEIE---LPVTK-VDI 192 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~---~~~~~-~Dv 192 (409)
....||++|+|+|..++.+|..+...|...|....+...+.+...+ .+...+.+...+..... +-.+. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 4567999999999999999986666999999877444444443322 23223444444433322 11233 999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEE
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (409)
|++.-+ +..+...+.++..+..+|..+|.+
T Consensus 166 ilasDv---vy~~~~~e~Lv~tla~ll~~~~~i 195 (248)
T KOG2793|consen 166 ILASDV---VYEEESFEGLVKTLAFLLAKDGTI 195 (248)
T ss_pred EEEeee---eecCCcchhHHHHHHHHHhcCCeE
Confidence 998543 445566667777777888888843
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0018 Score=59.97 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=63.4
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHH-------HHHHH--HcCCCCcEEEEEcccccccC-CC
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMA-------KQIVE--ANGFSNVITVLKGKIEEIEL-PV 187 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a-------~~~~~--~~~~~~~i~~~~~d~~~~~~-~~ 187 (409)
-...+++|||+|||+|...+.+...|+..+...|.|. .++.- ...+. .+....-..+......++.+ ..
T Consensus 113 ~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t 192 (282)
T KOG2920|consen 113 MSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHT 192 (282)
T ss_pred eEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhc
Confidence 3568899999999999999999998888999999988 66210 00000 11111112222221112221 01
Q ss_pred C--ceeEEEEecccccccChhHHHHH-HHHHHhcccCCeEEEcc
Q 015306 188 T--KVDIIISEWMGYFLLFENMLNTV-LYARDKWLVDDGIVLPD 228 (409)
Q Consensus 188 ~--~~DvVvs~~~~~~l~~~~~~~~~-l~~~~~~LkpgG~lip~ 228 (409)
+ .||+|.+.-..| .+...+.+ ......+++++|+++..
T Consensus 193 ~~~~ydlIlsSetiy---~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 193 ERTHYDLILSSETIY---SIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cccchhhhhhhhhhh---CcchhhhhHhhhhhhcCCccchhhhh
Confidence 3 788888754433 33344444 55666788999987643
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.004 Score=58.79 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=54.1
Q ss_pred EEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCceeEEEEecc
Q 015306 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWM 198 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~DvVvs~~~ 198 (409)
+|+|+.||.|.++..+.+.|...|.++|+++ +++..+.+... .++.+|+.++... ...+|+|+..+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCC
Confidence 6999999999999999999998999999999 88887776532 2567788776532 367999998753
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0081 Score=52.80 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcC-------CCCcEEEEEccccccc---CCCCce
Q 015306 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG-------FSNVITVLKGKIEEIE---LPVTKV 190 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~-------~~~~i~~~~~d~~~~~---~~~~~~ 190 (409)
.-.+.|||||-|.+.+.++. .+..-+.|.|+-. +.++.++++.+.. + .++.+...+..... +..++-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~-~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQY-PNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccc-ccceeeeccchhhccchhhhccc
Confidence 34689999999999999998 6777899999988 8888888887654 3 23566655554432 111221
Q ss_pred eEEEEecccccccCh-----hHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFE-----NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~li 226 (409)
+-.+.-...-++-.. -.-..++.+..-+|++||.++
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~y 180 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILY 180 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEE
Confidence 111110001000000 011456777778899999887
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.017 Score=55.54 Aligned_cols=97 Identities=22% Similarity=0.190 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEeccc
Q 015306 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMG 199 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~ 199 (409)
..+|||.=+|+|+=++..+. .+..+|+.-|+|+ +++.+++|+..|...+ ..+++.|+..+-.. ...||+|=.+++|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCCC
Confidence 78999999999999988887 5666999999999 9999999999994433 66777888776433 3789999887763
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+.-++++..+.++.||.+..
T Consensus 132 -------SPaPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 132 -------SPAPFLDAALRSVRRGGLLCV 152 (380)
T ss_pred -------CCchHHHHHHHHhhcCCEEEE
Confidence 344567777788888998764
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.015 Score=54.06 Aligned_cols=109 Identities=20% Similarity=0.155 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEccccccc--CCCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIE--LPVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~DvV 193 (409)
...++||-||.|.|......+++. ...+.-+|++. .++..++.+..- |. ..+|.+.-+|-..+- ...++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 456899999999999988888853 56899999999 999998887653 22 256888888876653 335899999
Q ss_pred EEecccccccChhH-HHHHHHHHHhcccCCeEEEccC
Q 015306 194 ISEWMGYFLLFENM-LNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 194 vs~~~~~~l~~~~~-~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.+.-.-....... ...+..-+.+.||+||+++...
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 98642222222221 3455667789999999988543
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.018 Score=54.40 Aligned_cols=96 Identities=24% Similarity=0.215 Sum_probs=64.8
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-c-ccccc------CC
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-K-IEEIE------LP 186 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d-~~~~~------~~ 186 (409)
.....|.+||-+|+|+ |.++...|+ .|+++|+.+|+++ .++.|++ + |... +..... + ..++. +.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~-~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATV-TDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeE-EeeccccccHHHHHHHHHhhcc
Confidence 4567899999999997 899999999 7999999999999 9999998 3 3221 111111 1 11111 22
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+|+.+.-. -.+..++.....++.||.++.
T Consensus 240 ~~~~d~~~dCs---------G~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 240 KKQPDVTFDCS---------GAEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred ccCCCeEEEcc---------CchHHHHHHHHHhccCCEEEE
Confidence 35588888511 123344555678899999763
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.038 Score=56.55 Aligned_cols=113 Identities=17% Similarity=0.039 Sum_probs=76.7
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G----AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g----~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
+.|.+.....+..+|+|..||+|.+...+++. + ...++|.|.++ ....|+.++--+|+...+....+|...-+.
T Consensus 176 ~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~ 255 (489)
T COG0286 176 ELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK 255 (489)
T ss_pred HHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc
Confidence 33444344456779999999999887777763 2 25799999999 999999999888876335556665544332
Q ss_pred -----CCCceeEEEEecccccccCh----------------------hHHHHHHHHHHhcccCCeE
Q 015306 186 -----PVTKVDIIISEWMGYFLLFE----------------------NMLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 186 -----~~~~~DvVvs~~~~~~l~~~----------------------~~~~~~l~~~~~~LkpgG~ 224 (409)
..++||+|++++......+. ..-..++..+...|+|||+
T Consensus 256 ~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~ 321 (489)
T COG0286 256 HDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGR 321 (489)
T ss_pred ccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCce
Confidence 23679999998754311110 0114667778888998763
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.021 Score=55.01 Aligned_cols=92 Identities=27% Similarity=0.258 Sum_probs=62.2
Q ss_pred cCCCCCCEEEEEcCC-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-cccccCCCCceeEE
Q 015306 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEEIELPVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~DvV 193 (409)
....+|++|+-+|+| .|.++..+|+ .| .+|+++|.++ -.+.|++.-. -.++... ......-.+.||+|
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADAI 233 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcEE
Confidence 456789999999998 2477888888 67 5999999999 8888887632 2333332 21111112349999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.-. . ...+....+.|++||.++.
T Consensus 234 i~tv--------~--~~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 234 IDTV--------G--PATLEPSLKALRRGGTLVL 257 (339)
T ss_pred EECC--------C--hhhHHHHHHHHhcCCEEEE
Confidence 8632 1 2334455588999999873
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.012 Score=51.32 Aligned_cols=110 Identities=17% Similarity=0.143 Sum_probs=71.0
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHHH-H------HHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQM-A------NMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~~-~------~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
..+.++.+|+|+=.|.|.++..++.. | -..|++.-..+. . ...+....+... .+++.+..+...+. +.+
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG-APQ 121 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-CCC
Confidence 56789999999999999999999983 4 337877655441 1 111111111222 23666666666665 337
Q ss_pred ceeEEEEeccccc----ccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 189 KVDIIISEWMGYF----LLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 189 ~~DvVvs~~~~~~----l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..|+++.....+. ..+......+..++.+.|||||+++...
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 7777776432222 2345567788889999999999987543
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.012 Score=57.67 Aligned_cols=94 Identities=29% Similarity=0.335 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-ccc--ccCCC-CceeE
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEE--IELPV-TKVDI 192 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~--~~~~~-~~~Dv 192 (409)
..++.+|+-+|||+ |+++..+++ .|+.+|+++|.++ -++.|++.... +.+.....+ ... ..... ..+|+
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCE
Confidence 34455999999998 889888888 7899999999999 99999875422 111111111 100 01222 36999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++-- .+ ....+..+.++++|||.++
T Consensus 242 vie~-~G--------~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 242 VIEA-VG--------SPPALDQALEALRPGGTVV 266 (350)
T ss_pred EEEC-CC--------CHHHHHHHHHHhcCCCEEE
Confidence 9842 11 2235566668999999987
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.099 Score=46.60 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=67.5
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cC--CCEEEEEecHH-HHHHHHHHHHHc---------------
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEAN--------------- 167 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g--~~~V~~vD~s~-~~~~a~~~~~~~--------------- 167 (409)
.+.+.+++.- .....+.++-|-+||+|.+.-.+.- ++ ...|+|-|+++ +++.|++|+...
T Consensus 37 sEi~qR~l~~-l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~ 115 (246)
T PF11599_consen 37 SEIFQRALHY-LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELREL 115 (246)
T ss_dssp HHHHHHHHCT-SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHH
Confidence 3445555432 2224556999999999977665554 22 45899999999 999999987421
Q ss_pred --------------------------CCCCcEEEEEccccccc-----CCCCceeEEEEecc-cccccCh-----hHHHH
Q 015306 168 --------------------------GFSNVITVLKGKIEEIE-----LPVTKVDIIISEWM-GYFLLFE-----NMLNT 210 (409)
Q Consensus 168 --------------------------~~~~~i~~~~~d~~~~~-----~~~~~~DvVvs~~~-~~~l~~~-----~~~~~ 210 (409)
|-.....+.+.|+++.. ......|+|+.+.. +....++ .-...
T Consensus 116 ~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ 195 (246)
T PF11599_consen 116 YEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQ 195 (246)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHH
Confidence 21223678888887732 11245799999742 2222222 24578
Q ss_pred HHHHHHhcccCCeEEE
Q 015306 211 VLYARDKWLVDDGIVL 226 (409)
Q Consensus 211 ~l~~~~~~LkpgG~li 226 (409)
++..+..+|-+++++.
T Consensus 196 ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 196 MLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHCCS-TT-EEE
T ss_pred HHHHHHhhCCCCcEEE
Confidence 8999999995455544
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.045 Score=52.71 Aligned_cols=127 Identities=16% Similarity=0.023 Sum_probs=82.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCC-----CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-------
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGA-----AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------- 184 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~-----~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 184 (409)
+.+.++.+|||+++..|.=+..+.+... ..|+|=|.+. -+...........- ..+.+...++...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 5678999999999999988888877532 2799999998 77777766644332 23555555554433
Q ss_pred --CCCCceeEEEEeccccc--c-cCh-----------------hHHHHHHHHHHhcccCCeEEEccCCceEEEEcccccc
Q 015306 185 --LPVTKVDIIISEWMGYF--L-LFE-----------------NMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 242 (409)
Q Consensus 185 --~~~~~~DvVvs~~~~~~--l-~~~-----------------~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~ 242 (409)
.....||-|+++..... . ... ...-.++....++||+||.++-++++ +.|++....
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS--LnpieNEaV 307 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS--LNPIENEAV 307 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC--CCchhhHHH
Confidence 12356999998743221 1 000 01135666677999999999988776 456665554
Q ss_pred chhhh
Q 015306 243 KDDKI 247 (409)
Q Consensus 243 ~~~~~ 247 (409)
.....
T Consensus 308 V~~~L 312 (375)
T KOG2198|consen 308 VQEAL 312 (375)
T ss_pred HHHHH
Confidence 44433
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0034 Score=62.18 Aligned_cols=101 Identities=22% Similarity=0.224 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC----CCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP----VTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~DvV 193 (409)
.++.+|||.=|++|+-++..|+ -|..+|++-|.++ .++..+++++.|+..+.++..+.|+..+-.. ...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 4567999999999999998888 3678999999999 9999999999999999899999998765422 4789999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
=.++.| ....+|+...+.++.||.++..
T Consensus 188 DLDPyG-------s~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 188 DLDPYG-------SPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ecCCCC-------CccHHHHHHHHHhhcCCEEEEE
Confidence 987753 3446778888889999998754
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.038 Score=56.49 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=61.9
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-----------cc-
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-----------IE- 184 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~~- 184 (409)
..++.+|+-+|||. |..++.+|+ .|+ .|+++|.++ .++.+++. |. +++..+..+ ..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA----~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GA----EFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC----eEEEeccccccccccchhhhcch
Confidence 45789999999997 888888888 687 899999999 88877762 32 221111100 00
Q ss_pred ---------CC--CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 ---------LP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ---------~~--~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+. ...+|+|+.-.. ......+..+.+...+.+||||+++-
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag---~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTAL---IPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCC---CCcccCcchHHHHHHHhcCCCCEEEE
Confidence 01 146999997321 11111232334777889999999873
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.038 Score=49.69 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCCChH-HHH-HHHcCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEcccccccCC-----CCceeE
Q 015306 122 KDKVVLDVGAGTGIL-SLF-CAKAGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELP-----VTKVDI 192 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l-~~~-la~~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~-----~~~~Dv 192 (409)
++.++||||.|.--+ .+. .-++|. +.+|.|+++ .+..|+.++..| ++...|++....=.+--|+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456899999997422 211 112444 899999999 999999999999 7777787765443332222 589999
Q ss_pred EEEecc
Q 015306 193 IISEWM 198 (409)
Q Consensus 193 Vvs~~~ 198 (409)
+.|++.
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999985
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.042 Score=52.86 Aligned_cols=65 Identities=35% Similarity=0.419 Sum_probs=53.0
Q ss_pred EEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEecc
Q 015306 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~DvVvs~~~ 198 (409)
+|+|+-||.|.+++-+.++|...|.++|+++ +++.-+.+.. ....+|+.++. ++. .+|+++..+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccC
Confidence 6999999999999999999988999999999 8888888764 67888998876 442 6999998754
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.042 Score=53.48 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=58.7
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
...++.+||-.|||. |.++..+++ .|+.+|+++|.++ .++.+++. |....+.....++.++....+.+|+|+-
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEEE
Confidence 345788999999864 666777777 6777899999999 88877652 3321111111122222212245899885
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. .+ . +..+....++|++||+++.
T Consensus 242 ~-~G----~----~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 242 V-SG----H----PSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred C-CC----C----HHHHHHHHHHhhcCCEEEE
Confidence 2 11 1 1234455678999999874
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.051 Score=49.12 Aligned_cols=104 Identities=20% Similarity=0.229 Sum_probs=65.3
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCce
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKV 190 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 190 (409)
.+++.++.+||=||+++|...-.++. -| ..-|||||.|+ .=+.+-..+.+. .+|--+..|++... .--+-+
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeeeE
Confidence 46789999999999999988777776 33 45799999987 433332222221 23555555665422 112468
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|+++.. .......+.-....+||+||-++.+
T Consensus 228 DvIFaDva-----qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 228 DVIFADVA-----QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEeccCC-----CchhhhhhhhhhhhhhccCCeEEEE
Confidence 88888642 1122233334456899999988754
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.038 Score=54.79 Aligned_cols=106 Identities=23% Similarity=0.184 Sum_probs=64.9
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-ccc-c-cC-CCCce
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEE-I-EL-PVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~-~-~~-~~~~~ 190 (409)
....++.+||.+|||. |.++..+|+ .|..+|++++.++ ..+.+++.. +. ..+.....+ ... + .+ ....+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4567889999999988 888888888 6776799999999 888887642 11 112222211 111 1 11 22469
Q ss_pred eEEEEecccc------------cccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGY------------FLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~------------~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+-..-+. .+...++....+....+.|+++|.++-
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 304 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSI 304 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEE
Confidence 9998632100 001111224456777789999999873
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.065 Score=50.82 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=41.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA 166 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~ 166 (409)
-.+|..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 47899999999999999998888855 899999999 99999999854
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.056 Score=48.91 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=34.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHH
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQ 162 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~ 162 (409)
..+|..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 47899999999999999999888855 899999999 9998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.26 Score=46.43 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=64.8
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCC
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVT 188 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 188 (409)
.+...++...+|.=-|.|..+..+.+.. ..+++|+|-++ +++.|++.+...+ +++++++.++.++. ...+
T Consensus 18 ~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~i~ 95 (314)
T COG0275 18 LLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELGIG 95 (314)
T ss_pred hcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcCCC
Confidence 3556788999999999999999999853 46799999999 9999999987765 68999999988765 2246
Q ss_pred ceeEEEEec
Q 015306 189 KVDIIISEW 197 (409)
Q Consensus 189 ~~DvVvs~~ 197 (409)
++|-|+.+.
T Consensus 96 ~vDGiL~DL 104 (314)
T COG0275 96 KVDGILLDL 104 (314)
T ss_pred ceeEEEEec
Confidence 888888753
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.072 Score=50.72 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-CCCc
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-PVTK 189 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~ 189 (409)
....++..++|.=-|.|..+..+++ .+..+|+|+|.++ +++.|++++... .+++.++++++.++. . ...+
T Consensus 16 L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 16 LNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp HT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred hCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCc
Confidence 3357888999999999999999998 4568999999999 999998877543 578999999998865 2 3368
Q ss_pred eeEEEEec
Q 015306 190 VDIIISEW 197 (409)
Q Consensus 190 ~DvVvs~~ 197 (409)
+|-|+.+.
T Consensus 94 ~dgiL~DL 101 (310)
T PF01795_consen 94 VDGILFDL 101 (310)
T ss_dssp EEEEEEE-
T ss_pred cCEEEEcc
Confidence 99999863
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.13 Score=46.98 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=41.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (409)
..+|..|||.-||+|..+..+.+.|. +++|+|+++ ..+.|.+++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 36889999999999999998888865 899999999 999998888653
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.021 Score=55.73 Aligned_cols=64 Identities=27% Similarity=0.338 Sum_probs=57.6
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcccccc
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEI 183 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~ 183 (409)
...+|..|-|+.||.|.+++.+++.| ++|++-|.++ ++++.+.++..|.+... |+++..|+.++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 35789999999999999999999987 6999999999 99999999999988766 88888888665
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.56 Score=45.54 Aligned_cols=108 Identities=18% Similarity=0.165 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc----------CC-------CEEEEEecHH--HHHHHHHHHHH-----cCCCCcEEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA----------GA-------AHVYAVECSQ--MANMAKQIVEA-----NGFSNVITV 175 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~----------g~-------~~V~~vD~s~--~~~~a~~~~~~-----~~~~~~i~~ 175 (409)
....-+|+|+||.+|..++.+... -. -+|+--|.-. .-...+..... ..-.--+..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344569999999999888766542 01 2677777643 22222221111 011111334
Q ss_pred EEcccccccCCCCceeEEEEecccccccC------------------------------------hhHHHHHHHHHHhcc
Q 015306 176 LKGKIEEIELPVTKVDIIISEWMGYFLLF------------------------------------ENMLNTVLYARDKWL 219 (409)
Q Consensus 176 ~~~d~~~~~~~~~~~DvVvs~~~~~~l~~------------------------------------~~~~~~~l~~~~~~L 219 (409)
+-+.+..--+|.++.|+++|....+.+.. ..++..+|+.+++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 55666666688899999999633332211 124567888889999
Q ss_pred cCCeEEEc
Q 015306 220 VDDGIVLP 227 (409)
Q Consensus 220 kpgG~lip 227 (409)
+|||+++.
T Consensus 174 v~GG~mvl 181 (334)
T PF03492_consen 174 VPGGRMVL 181 (334)
T ss_dssp EEEEEEEE
T ss_pred ccCcEEEE
Confidence 99999983
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.078 Score=41.92 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 155 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~ 155 (409)
+.....|||||.|.+...|.+.|. .=+|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 456799999999999999999877 567888643
|
; GO: 0008168 methyltransferase activity |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.25 Score=45.70 Aligned_cols=96 Identities=20% Similarity=0.265 Sum_probs=70.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIII 194 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~DvVv 194 (409)
...|+.|+-+| -.-+.++.++-.| +++|..+|+++ ++....+.++..|+.+ ++.+.-|+++. +| .++||+++
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~p-lpe~~~~kFDvfi 226 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNP-LPEDLKRKFDVFI 226 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhccc-ChHHHHhhCCeee
Confidence 45678999999 4557777777644 78999999999 9999999999999854 88888888774 33 47899999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCC
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDD 222 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~Lkpg 222 (409)
.+++- ....+..++..=...||.-
T Consensus 227 TDPpe----Ti~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 227 TDPPE----TIKALKLFLGRGIATLKGE 250 (354)
T ss_pred cCchh----hHHHHHHHHhccHHHhcCC
Confidence 87742 1234555555444555543
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.79 Score=42.87 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=81.9
Q ss_pred hHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEcccc
Q 015306 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIE 181 (409)
Q Consensus 104 ~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~~ 181 (409)
..|+..+-+.+.+.... ....|+.||||--.-+..+......+++=+|..++++.-++.+...+. ..+.+++..|+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 34555555555544332 235799999998776665543222467777776677766777776542 366889999986
Q ss_pred ccc--------CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 182 EIE--------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 182 ~~~--------~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.. +.....-+++++.+..++ .+.....++..+.....||+.++...
T Consensus 143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL-~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 143 QDWPAALAAAGFDPTAPTAWLWEGLLMYL-TEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred hhHHHHHHhCCCCCCCCeeeeecchhhcC-CHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 211 222456688888776655 44567789999988888999988654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.23 Score=48.34 Aligned_cols=109 Identities=20% Similarity=0.160 Sum_probs=73.5
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHH-------HcCC-CCcEEEEEccccccc
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVE-------ANGF-SNVITVLKGKIEEIE 184 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~~ 184 (409)
.......++....|+|+|.|.+...++. .+.+.-+|+++.. ..+.|..+.. ..|- .+.+..+++++.+..
T Consensus 185 ~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~ 264 (419)
T KOG3924|consen 185 VDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPK 264 (419)
T ss_pred HHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHH
Confidence 3335678889999999999999888887 5677888998876 5555443332 2232 356888888887654
Q ss_pred C---CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 L---PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~---~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. -....++|+++.+ ...+ .+..=+..+..-+++|-++|-
T Consensus 265 ~v~eI~~eatvi~vNN~---~Fdp-~L~lr~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 265 RVTEIQTEATVIFVNNV---AFDP-ELKLRSKEILQKCKDGTRIIS 306 (419)
T ss_pred HHHHHhhcceEEEEecc---cCCH-HHHHhhHHHHhhCCCcceEec
Confidence 2 1367999998654 3332 332223366677889988873
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.34 Score=48.33 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=55.4
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
..+|++|+-+|+|. |.....+++ .|+ +|+.+|.++ .+..|++ .|. +.+ +..+. . ..+|+|+..
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~-v--~~aDVVI~a 264 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA-V--KEGDIFVTT 264 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH-H--cCCCEEEEC
Confidence 46899999999997 655555565 677 899999999 7666654 232 222 12221 1 458999862
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. +....+-.+..+.+|+||+++.
T Consensus 265 t--------G~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 265 T--------GNKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred C--------CCHHHHHHHHHhcCCCCcEEEE
Confidence 1 1222233344688999999874
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.39 Score=47.29 Aligned_cols=105 Identities=14% Similarity=0.216 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCChHHHHHHHc------------C----CCEEEEEecHH--HHHHHHHHHH--H-----------cCCC-
Q 015306 123 DKVVLDVGAGTGILSLFCAKA------------G----AAHVYAVECSQ--MANMAKQIVE--A-----------NGFS- 170 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~------------g----~~~V~~vD~s~--~~~~a~~~~~--~-----------~~~~- 170 (409)
..+|+|+|||+|..++.+... + --+|+.-|... .-...+.... . .+-.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999877655321 1 12566666543 2222222111 0 0000
Q ss_pred CcEEEEEcccccccCCCCceeEEEEecccccccC-----------------------------------hhHHHHHHHHH
Q 015306 171 NVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------------------------------ENMLNTVLYAR 215 (409)
Q Consensus 171 ~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~-----------------------------------~~~~~~~l~~~ 215 (409)
--+..+-+.+..--+|.++.++++|....+.+.. ..++..+|+.+
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122233444444578899999998643333321 01345778888
Q ss_pred HhcccCCeEEEc
Q 015306 216 DKWLVDDGIVLP 227 (409)
Q Consensus 216 ~~~LkpgG~lip 227 (409)
.+-|.|||+++.
T Consensus 224 a~ELvpGG~mvl 235 (386)
T PLN02668 224 AQEMKRGGAMFL 235 (386)
T ss_pred HHHhccCcEEEE
Confidence 899999999883
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.2 Score=46.01 Aligned_cols=89 Identities=22% Similarity=0.258 Sum_probs=65.8
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.+.+|....|+|+..|.++..+.+.+- .|++||.-+|.... -.. ..|+....|-..+.....++|-.||+++
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL----~dt---g~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSL----MDT---GQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhh----hcc---cceeeeeccCcccccCCCCCceEEeehh
Confidence 467899999999999999999999855 99999988743322 222 3488888888777654578999999875
Q ss_pred cccccChhHHHHHHHHHHhcccCC
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDD 222 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~Lkpg 222 (409)
..+..+-.-+..+|..|
T Consensus 280 -------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 -------EKPARVAALIAKWLVNG 296 (358)
T ss_pred -------cCcHHHHHHHHHHHHcc
Confidence 34445555555666554
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.33 Score=45.09 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCChHHHHHHHc-C--------CCEEEEEecHH-HHHHHHHHHHHc-----CCCCcEEEEEcccccccCCC
Q 015306 123 DKVVLDVGAGTGILSLFCAKA-G--------AAHVYAVECSQ-MANMAKQIVEAN-----GFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~-g--------~~~V~~vD~s~-~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~ 187 (409)
..+|+|+|+|+|.++..+++. . ..+++.||+|+ +.+..++.+... ....+|.+. .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 469999999999999988873 1 24899999999 888888877542 244557773 3443332
Q ss_pred CceeEEEEecc
Q 015306 188 TKVDIIISEWM 198 (409)
Q Consensus 188 ~~~DvVvs~~~ 198 (409)
..-+|+++-+
T Consensus 95 -~~~~iiaNE~ 104 (252)
T PF02636_consen 95 -FPGFIIANEL 104 (252)
T ss_dssp -CCEEEEEESS
T ss_pred -CCEEEEEeee
Confidence 4567777543
|
; PDB: 4F3N_A 1ZKD_B. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.16 Score=51.82 Aligned_cols=94 Identities=20% Similarity=0.266 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc---------------
Q 015306 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--------------- 182 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--------------- 182 (409)
.++.+||-+|+|. |..+..+++ .|+ .|+++|.++ .++.++.. |. +++..+..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~l----Ga----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSM----GA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC----eEEeccccccccccccceeecCHH
Confidence 4568999999997 677777777 576 699999999 77766652 32 222222211
Q ss_pred cc------CC--CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 183 IE------LP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 183 ~~------~~--~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.. ++ -..+|+|+...+ +.+...+.-+.++..+.+|||++++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tal---ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTAL---IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcc---cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 00 11 256999987543 2222222234556678999999987
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.87 Score=42.11 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=70.8
Q ss_pred hHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH----cC--CCEEEEEecHH----------------------
Q 015306 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG--AAHVYAVECSQ---------------------- 155 (409)
Q Consensus 104 ~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~----~g--~~~V~~vD~s~---------------------- 155 (409)
..|...+..++.......-+..|+|+||-.|..++.++. .+ ..++++.|.=+
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 445666677776655444456899999999987766543 22 45788887511
Q ss_pred -----HHHHHHHHHHHcCC-CCcEEEEEccccccc--CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 156 -----MANMAKQIVEANGF-SNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 156 -----~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~--~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+..++++...++ .+++.++.+.+.+-- .+.+++-++..+. -.+++ ....|+.+...|.|||++|+
T Consensus 136 ~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~----DlYes-T~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC----DLYES-TKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHHH-HHHHHHHHGGGEEEEEEEEE
T ss_pred cccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec----cchHH-HHHHHHHHHhhcCCCeEEEE
Confidence 22333344444443 467999999997642 2234555555432 12233 34678888999999999998
Q ss_pred cCCce
Q 015306 228 DKASL 232 (409)
Q Consensus 228 ~~~~~ 232 (409)
..+..
T Consensus 211 DDY~~ 215 (248)
T PF05711_consen 211 DDYGH 215 (248)
T ss_dssp SSTTT
T ss_pred eCCCC
Confidence 77654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.13 Score=49.67 Aligned_cols=66 Identities=26% Similarity=0.334 Sum_probs=51.5
Q ss_pred EEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEecc
Q 015306 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (409)
Q Consensus 126 VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~ 198 (409)
|+|+.||.|.+++-+.++|..-+.++|+++ +++..+.+.. + .++.+|+.++... ...+|+++..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999999999999987888999999 8887777653 2 3456788877532 246899998643
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.5 Score=39.38 Aligned_cols=87 Identities=14% Similarity=0.271 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCC----hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTG----ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G----~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (409)
...|..+|. .-..-+.++++.|+.| .+++.+|. .-..++++|-+++ .....++.+...++.+.++|+.++.
T Consensus 29 ~aEfISAlA---AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 29 VAEFISALA---AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred HHHHHHHHh---ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 334555543 4456678999966644 23333333 3344889999988 7777788888788888789999885
Q ss_pred -ccccCCCCceeEEEEe
Q 015306 181 -EEIELPVTKVDIIISE 196 (409)
Q Consensus 181 -~~~~~~~~~~DvVvs~ 196 (409)
+++...-..+|+++.+
T Consensus 106 ~e~~~~~~~~iDF~vVD 122 (218)
T PF07279_consen 106 PEEVMPGLKGIDFVVVD 122 (218)
T ss_pred HHHHHhhccCCCEEEEe
Confidence 4443334679999964
|
The function of this family is unknown. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.41 Score=46.53 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=55.1
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
..++.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.+++ .+. ...+ .++. ....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~-~~~g~d~viD 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIP-EDLAVDHAFE 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhh-hccCCcEEEE
Confidence 46789999999875 556556555 3667899999998 8887764 121 1111 1111 1124899884
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. .+ . ...+..+....++|++||+++.
T Consensus 229 ~-~G----~-~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 229 C-VG----G-RGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred C-CC----C-CccHHHHHHHHHhCcCCcEEEE
Confidence 2 21 1 1122345556689999999873
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.29 Score=47.33 Aligned_cols=54 Identities=30% Similarity=0.322 Sum_probs=40.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHH
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQI 163 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~ 163 (409)
..+.+.......+-..|+|+|.|.|.++.+++-...-.|+|||-|. ..+.|++.
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 3344444334455578999999999999999884344999999999 77777654
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.46 Score=46.70 Aligned_cols=97 Identities=23% Similarity=0.219 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-cc-CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE-LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~~Dv 192 (409)
....++.+||-.|+|. |.++..+|+ .|+.+|+++|.++ -.+.+++ .|....+.....+..+ +. ...+.+|+
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 4567888999999864 566666777 6777899999999 8777754 2432111111111111 11 11236899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+-.. + .. ..+....+.|+++|.++.
T Consensus 263 vid~~-G----~~----~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 263 AFEMA-G----SV----PALETAYEITRRGGTTVT 288 (371)
T ss_pred EEECC-C----Ch----HHHHHHHHHHhcCCEEEE
Confidence 98421 1 11 234444578999999873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.58 Score=45.72 Aligned_cols=97 Identities=20% Similarity=0.154 Sum_probs=58.1
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-cc--CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~~D 191 (409)
....++.+||-.|||. |.++..+|+ .|+.+|+++|.++ ..+.+++ .|...-+.....+..+ +. .....+|
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 4567889999999865 666777777 6776799999998 8777754 3332111111111111 10 1224689
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+-. .+ .. ..+....+.|++||+++.
T Consensus 248 ~vid~-~g----~~----~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 248 VVIDA-VG----RP----ETYKQAFYARDLAGTVVL 274 (358)
T ss_pred EEEEC-CC----CH----HHHHHHHHHhccCCEEEE
Confidence 99842 11 11 223444578999999874
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.2 Score=47.54 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=40.1
Q ss_pred EEEEEcccccc--cCCCCceeEEEEeccccccc--------------ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 173 ITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL--------------FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 173 i~~~~~d~~~~--~~~~~~~DvVvs~~~~~~l~--------------~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+++++|+.+. .+++++||+|++++. |... +...+..++.++.++|||||.++.
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 57899999885 366789999999974 3221 112245788899999999999874
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.35 Score=46.31 Aligned_cols=84 Identities=25% Similarity=0.177 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
.++.+||-+|||. |.++..+|+ .|+..|+++|.++ .++.|.+. . ++ |..+. ....+|+|+-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~~~g~Dvvid~- 207 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--PRRDYRAIYDA- 207 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--cCCCCCEEEEC-
Confidence 3577899999875 777777777 6887788899888 76655432 1 11 11110 12468998842
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+ . ...+....++|+++|+++.
T Consensus 208 ~G----~----~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 208 SG----D----PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred CC----C----HHHHHHHHHhhhcCcEEEE
Confidence 11 1 1234555678999999873
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.48 Score=44.79 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=68.5
Q ss_pred CCEEEEEcCCC-ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 123 DKVVLDVGAGT-GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 123 ~~~VLDlGcG~-G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
+.+|.-||.|. |..+..+|--..+.|+.+|.|. -++.....+. .++..+......+...-.++|+||...+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL-- 240 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL-- 240 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE--
Confidence 35778888886 5555555552344999999998 7776665543 4588888877777655578999997543
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEE
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+.....+.-+.+++.+.+|||++++
T Consensus 241 -IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 241 -IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -ecCCCCceehhHHHHHhcCCCcEEE
Confidence 4455566666777789999999987
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.37 Score=45.46 Aligned_cols=73 Identities=26% Similarity=0.282 Sum_probs=52.5
Q ss_pred EEEEcCCCChH-HHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-------CCCceeEEEEe
Q 015306 126 VLDVGAGTGIL-SLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-------PVTKVDIIISE 196 (409)
Q Consensus 126 VLDlGcG~G~l-~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~DvVvs~ 196 (409)
=+|||.|...+ .+.=++...-..+++|+++ .+..|..++.+|++++.+.+++.....-.+ ++..||++.|+
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 47998887533 2222222234789999999 999999999999999999988875533221 13459999998
Q ss_pred cc
Q 015306 197 WM 198 (409)
Q Consensus 197 ~~ 198 (409)
+.
T Consensus 186 PP 187 (419)
T KOG2912|consen 186 PP 187 (419)
T ss_pred Cc
Confidence 74
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.32 Score=45.83 Aligned_cols=94 Identities=26% Similarity=0.224 Sum_probs=55.5
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE--cccccccCCCCceeEEE
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK--GKIEEIELPVTKVDIII 194 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~~DvVv 194 (409)
..++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -.+.+++. |....+.... ..+... .....+|+|+
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~-~~~~g~d~vi 192 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATALAEPEVLAERQGGL-QNGRGVDVAL 192 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcEecCchhhHHHHHHH-hCCCCCCEEE
Confidence 45788999998864 566666777 6776799999888 77776653 3321111100 001111 1224689988
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-. .+ . ...+....+.|+++|+++.
T Consensus 193 d~-~G----~----~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 193 EF-SG----A----TAAVRACLESLDVGGTAVL 216 (280)
T ss_pred EC-CC----C----hHHHHHHHHHhcCCCEEEE
Confidence 42 11 1 1234445678999999873
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.3 Score=41.62 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHH-HHHHHHHHcCCCCcEE-EEEccccc-ccCCCCceeEEEEecc
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MAN-MAKQIVEANGFSNVIT-VLKGKIEE-IELPVTKVDIIISEWM 198 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~-~a~~~~~~~~~~~~i~-~~~~d~~~-~~~~~~~~DvVvs~~~ 198 (409)
+++++-+|+..=..-..+.+.|+++|+.||.++ -+. ..+ +++. +...|... +..-.++||++.|-..
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheech
Confidence 678999999986666667778999999999987 221 111 1111 11112111 1111378999887321
Q ss_pred c-cc--------ccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 G-YF--------LLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~-~~--------l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. +. +...+++ ..+..+.++|||||.++.
T Consensus 73 iEh~GLGRYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l 109 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDL-RAMAKIKCVLKPGGLLFL 109 (177)
T ss_pred hccccccccCCCCCccccH-HHHHHHHHhhccCCeEEE
Confidence 1 11 1112233 445667799999999874
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=92.00 E-value=1.5 Score=35.11 Aligned_cols=87 Identities=17% Similarity=0.149 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCC-hHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEecccc
Q 015306 123 DKVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGY 200 (409)
Q Consensus 123 ~~~VLDlGcG~G-~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~ 200 (409)
..+|.++|-|.= ..+..++++|. .|+++|+++. +. + ..+.++..|+++.... -...|+|.|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a---~--~g~~~v~DDitnP~~~iY~~A~lIYS----- 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TA---P--EGLRFVVDDITNPNISIYEGADLIYS----- 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cC---c--ccceEEEccCCCccHHHhhCccceee-----
Confidence 348999999874 34667777885 8999999871 11 1 2388999999886543 367899998
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+...+.+...+-.+.+.++-.-++.|
T Consensus 77 -iRpppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 77 -IRPPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred -cCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 33334454444455566654444443
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.28 Score=47.60 Aligned_cols=69 Identities=29% Similarity=0.283 Sum_probs=54.4
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC--C-ceeEEEEecc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV--T-KVDIIISEWM 198 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~-~~DvVvs~~~ 198 (409)
.+++|+-||.|.+.+-+.+.|..-+.++|+++ +++.-+.+... ..++..|+..+.... . .+|+|+..+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 57999999999999999999998999999999 88877776542 356667777655321 2 7999998653
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.52 Score=43.37 Aligned_cols=95 Identities=28% Similarity=0.320 Sum_probs=56.6
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~Dv 192 (409)
....++.+||..|+|+ |..+..+++ .| .+|++++.++ ..+.+++. +....+.....+... + ....+.+|+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 3347889999999996 666666777 45 5999999998 77766543 221111111111100 0 112367999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++...- .. ..+....+.|+++|.++
T Consensus 205 vi~~~~-----~~----~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 205 VIDAVG-----GP----ETLAQALRLLRPGGRIV 229 (271)
T ss_pred EEECCC-----CH----HHHHHHHHhcccCCEEE
Confidence 986321 10 23455567889999987
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.25 Score=45.24 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=39.4
Q ss_pred EEEEEcccccc--cCCCCceeEEEEeccccccc-----C--------hhHHHHHHHHHHhcccCCeEEE
Q 015306 173 ITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL-----F--------ENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 173 i~~~~~d~~~~--~~~~~~~DvVvs~~~~~~l~-----~--------~~~~~~~l~~~~~~LkpgG~li 226 (409)
++++++|..++ .++++++|+|++++. |.+. . ..-....+.++.|+|||||.++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~ 69 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMV 69 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEE
Confidence 46788898876 578899999999974 4321 0 1224577889999999999876
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.93 Score=46.02 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=52.1
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---------------
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--------------- 186 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------------- 186 (409)
..+++|+-||.|.+++-+-+.|...|.++|+++ +.+.-+.+.... .....+.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhh
Confidence 459999999999999999889988899999999 777766664211 1134455666665421
Q ss_pred --CCceeEEEEec
Q 015306 187 --VTKVDIIISEW 197 (409)
Q Consensus 187 --~~~~DvVvs~~ 197 (409)
...+|+++..+
T Consensus 165 ~~~p~~DvL~gGp 177 (467)
T PRK10458 165 QHIPDHDVLLAGF 177 (467)
T ss_pred ccCCCCCEEEEcC
Confidence 13689998864
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.58 Score=49.98 Aligned_cols=105 Identities=12% Similarity=0.063 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCChHHHHHHH-c-------C-----CCEEEEEecHH-HHHHHHH--------------HHHH-----cC
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-A-------G-----AAHVYAVECSQ-MANMAKQ--------------IVEA-----NG 168 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~-------g-----~~~V~~vD~s~-~~~~a~~--------------~~~~-----~~ 168 (409)
+.-+|||+|=|+|...+.+.+ . . .-+++++|..+ ..+..++ .... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 446999999999976555443 1 1 23899999754 2222222 1111 12
Q ss_pred C------CC--cEEEEEcccccccCC-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 169 F------SN--VITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 169 ~------~~--~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+ .+ .+++..+|+.+.-.. ...+|+++.+.+.-.-..+---+.++..+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 2 11 345677888764311 2579999987543222222223688999999999999987
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.2 Score=42.99 Aligned_cols=89 Identities=24% Similarity=0.316 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc---cccccCCCCceeEEEE
Q 015306 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEIELPVTKVDIIIS 195 (409)
Q Consensus 122 ~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~~DvVvs 195 (409)
++.+||..|||. |..+..+++ .|..+|++++.++ ..+.+++. +.. .++..+ ........+.+|+++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence 788999998875 666666777 5776899999988 77765542 322 122211 1122212245999986
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.. + . ...+....+.|+++|+++
T Consensus 238 ~~-g----~----~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 238 AS-G----A----PAALASALRVVRPGGTVV 259 (339)
T ss_pred CC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 31 1 1 123455568889999987
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=1 Score=43.66 Aligned_cols=98 Identities=23% Similarity=0.239 Sum_probs=55.9
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~Dv 192 (409)
....++.+||-.|+|. |.++..+|+ .|+..|++++.++ ..+.+++ .|....+.....+...+. .....+|.
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCe
Confidence 3456788999998865 566666777 6776789999888 7776644 233211111111111111 12246784
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++.+..+ . ...+....++|++||.++.
T Consensus 232 ~v~d~~G----~----~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 232 LILETAG----V----PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred EEEECCC----C----HHHHHHHHHHhhcCCEEEE
Confidence 4433322 1 1344555688899999874
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.44 Score=46.08 Aligned_cols=97 Identities=25% Similarity=0.194 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~Dv 192 (409)
....++.+||-+|+|. |.++..+++ .|+++|++++.++ ..+.+++. |....+.....+...+. .....+|+
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 3456789999998764 556666666 6776699999988 77776543 33211111111111111 12247999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+-.. .. ...+....+.|+++|.++.
T Consensus 235 vid~~-----g~----~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 235 AIECS-----GN----TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred EEECC-----CC----HHHHHHHHHHhhcCCEEEE
Confidence 98421 11 1233444578999999873
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.79 Score=44.72 Aligned_cols=92 Identities=24% Similarity=0.434 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEec---HH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVEC---SQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~---s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
..++.+||-+|+|. |.++..+++ .|+ +|++++. ++ -.+.+++ .|.. .+.....+..+... ...+|+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~~-~~~~d~v 242 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVKL-VGEFDLI 242 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhhh-cCCCCEE
Confidence 35788999999875 677777777 566 7999986 55 5555543 3432 11111111111111 2568988
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+-.. + . ...+....+.|++||.++.
T Consensus 243 id~~-g----~----~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 243 IEAT-G----V----PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred EECc-C----C----HHHHHHHHHHccCCcEEEE
Confidence 8521 1 1 1244556688999998873
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.5 Score=43.29 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=35.5
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (409)
....++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 4567899999999875 566666777 6776899999998 8887765
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.94 Score=39.86 Aligned_cols=110 Identities=13% Similarity=0.227 Sum_probs=65.1
Q ss_pred HhHHHHHHHHHhccCCCCCC-EEEEEcCCCChHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEccc
Q 015306 105 VRTKSYQNVIYQNKFLFKDK-VVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKI 180 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~-~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~ 180 (409)
.|+..+.+.+.+.....++. .|+.||||--.....+... |..+++-+|..++++.-++.+...+. +.+.+++.+|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 34555555555444333444 8999999998888888774 45588888887766666666665532 12245789998
Q ss_pred cccc---------CCCCceeEEEEecccccccChhHHHHHHHHH
Q 015306 181 EEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYAR 215 (409)
Q Consensus 181 ~~~~---------~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~ 215 (409)
.+.. +.....-+++++.+..++. +.....+++.+
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~-~~~~~~ll~~i 182 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYLS-PEQVDALLRAI 182 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS--HHHHHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcCC-HHHHHHHHHHh
Confidence 8632 2246677899988766554 34455555543
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.73 Score=41.31 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=61.5
Q ss_pred hhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE
Q 015306 96 IHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (409)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (409)
..++++.|.. +.+.|.+........-|.+||.|.|.++..+..+|+.+...||.+. .+.-.+-..+... .+..
T Consensus 28 LSQNfLMD~~----lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~ 101 (326)
T KOG0821|consen 28 LSQNFLMDLR----LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLR 101 (326)
T ss_pred HhHhHHhhhH----HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceE
Confidence 4444555543 3344455556667788999999999999999999999999999999 8887776665443 4578
Q ss_pred EEEccccccc
Q 015306 175 VLKGKIEEIE 184 (409)
Q Consensus 175 ~~~~d~~~~~ 184 (409)
+.++|+....
T Consensus 102 IHh~D~LR~~ 111 (326)
T KOG0821|consen 102 IHHGDVLRFK 111 (326)
T ss_pred Eeccccceeh
Confidence 8888886653
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.3 Score=42.49 Aligned_cols=96 Identities=23% Similarity=0.243 Sum_probs=58.5
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~Dv 192 (409)
....++.+||..|+|. |..+..+|+ .|. +|++++.++ ..+.+++ .+....+.....+..+ + ......+|+
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCceE
Confidence 4467788999988763 777777888 565 799999998 8777754 2332111111111100 0 123467999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++... + . ...+....+.|+++|.++-
T Consensus 236 vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 236 IFDFV-G----T----QPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred EEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 88521 1 1 2345566789999999873
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.4 Score=38.67 Aligned_cols=97 Identities=24% Similarity=0.286 Sum_probs=60.9
Q ss_pred EEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cC-C--------CCcEEEEEcccccccC
Q 015306 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NG-F--------SNVITVLKGKIEEIEL 185 (409)
Q Consensus 125 ~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~~~ 185 (409)
+|.-||+|+ | .++..++..|. +|+.+|.++ .++.+++.+.. .+ + -.++++ ..|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH--
Confidence 467789987 3 55666777776 999999999 98888776654 11 1 123443 3444443
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
...|+|+=.. ......-..++..+.+.+.|+.+|.-++.+
T Consensus 77 --~~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 77 --VDADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp --CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred --hhhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 3689998532 334455678899999999999887755443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=90.56 E-value=4 Score=35.17 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=66.5
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-C
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-L 185 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~ 185 (409)
..+.+.+.+. ..++.+|+-|||=+-...+.-......+++..|.+. .... .+. .|+.-|..... +
T Consensus 13 ~~l~~~l~~~--~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~----------~~~-~F~fyD~~~p~~~ 79 (162)
T PF10237_consen 13 EFLARELLDG--ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF----------GGD-EFVFYDYNEPEEL 79 (162)
T ss_pred HHHHHHHHHh--cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc----------CCc-ceEECCCCChhhh
Confidence 3455555532 245689999999885444433223466899999987 3221 122 34444443321 1
Q ss_pred C---CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 186 P---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 186 ~---~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+ .+++|+||+++. +..+..+......+..++|+++.+|..
T Consensus 80 ~~~l~~~~d~vv~DPP---Fl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 80 PEELKGKFDVVVIDPP---FLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred hhhcCCCceEEEECCC---CCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 1 479999999986 356677777778887788998888854
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.51 Score=48.40 Aligned_cols=98 Identities=21% Similarity=0.221 Sum_probs=60.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cC-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CCC
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPV 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 187 (409)
..+.++..||||||..|.+...+++ .| ..-|+|||+-|+ ..+++ +.-++.|++... +..
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi----------kp~~~-c~t~v~dIttd~cr~~l~k~l~t 108 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI----------KPIPN-CDTLVEDITTDECRSKLRKILKT 108 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec----------ccCCc-cchhhhhhhHHHHHHHHHHHHHh
Confidence 4456788999999999999999998 55 447999999771 12222 333344444322 123
Q ss_pred CceeEEEEecccccccC---hhHH-----HHHHHHHHhcccCCeEEE
Q 015306 188 TKVDIIISEWMGYFLLF---ENML-----NTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~---~~~~-----~~~l~~~~~~LkpgG~li 226 (409)
-+.|+|+++....+... .... -..++-...+|..||.++
T Consensus 109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 56799998764443221 1111 122333457888999876
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.17 E-value=1.5 Score=43.29 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--cccc-cc-CCCCce
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIEE-IE-LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~~-~~~~~~ 190 (409)
....++.+||-.|+|. |.++..+++ .|+..|+++|.++ ..+.|++ .|....+..... +... +. +..+.+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCC
Confidence 4567899999998865 566666777 6877899999888 7777654 343211111110 1111 10 112368
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCC-eEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (409)
|+|+-. .+ . . ..+....++|++| |+++.
T Consensus 265 d~vid~-~G----~---~-~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 265 DYSFEC-VG----D---T-GIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CEEEEC-CC----C---h-HHHHHHHHhhccCCCEEEE
Confidence 998842 11 1 1 2234445778898 99863
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.01 E-value=1.2 Score=43.01 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=38.9
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc---------CCCEEEEEecHH-HHHHHHHHHHHc
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA---------GAAHVYAVECSQ-MANMAKQIVEAN 167 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~---------g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (409)
.......++|+|.|+|.++..+++. ...++..||+|+ ....-+++++..
T Consensus 74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3445568999999999998877763 256999999999 888888877654
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.061 Score=45.37 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=37.8
Q ss_pred EEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 173 ITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 173 i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+++.......|.++++|+|.++-+..++.. .....+++.++++|||||++-.+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEE
Confidence 33444444445577899999999765444433 33457789999999999998643
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.76 Score=37.47 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=51.8
Q ss_pred CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCceeEEEEeccccccc
Q 015306 132 GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLL 203 (409)
Q Consensus 132 G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~DvVvs~~~~~~l~ 203 (409)
|.|.++..+|+ .| .+|+++|.++ -.+.+++. |.. .++..+-.++. .+...+|+|+-- ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~-----~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----GAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDC-----VG 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----TES---EEEETTTSSHHHHHHHHTTTSSEEEEEES-----SS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----ccc---ccccccccccccccccccccccceEEEEe-----cC
Confidence 45888899999 67 7999999999 88877653 321 22332222111 223589999852 11
Q ss_pred ChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 204 FENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
. ...++....+|+++|.++.-
T Consensus 68 ~----~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 S----GDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp S----HHHHHHHHHHEEEEEEEEEE
T ss_pred c----HHHHHHHHHHhccCCEEEEE
Confidence 1 24556666899999998854
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.31 E-value=9.2 Score=35.18 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc----C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCcee
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVD 191 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~----g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D 191 (409)
...+...+|+|+|+..-+..+... | ..+++.+|+|. .++...+.+......-.+.-+.+|.+.-- ++...--
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 345789999999998766666552 3 45899999999 76654443333322223666777765422 2222222
Q ss_pred EEEEecccccc--cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++. +++.+ ..++.-..++..+...|.||-.++.
T Consensus 156 l~~f--lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 156 LFVF--LGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEE--ecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 2222 23323 2344566889999999999988774
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.1 Score=43.04 Aligned_cols=47 Identities=28% Similarity=0.358 Sum_probs=40.6
Q ss_pred ccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHH
Q 015306 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (409)
.....+|.+|.-+|||. |..++.-|+ +|+.+++|+|+++ -++.|++.
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 35678899999999986 888888887 7999999999999 99998874
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.59 E-value=2.9 Score=39.43 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=57.7
Q ss_pred CCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------C
Q 015306 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (409)
...|..||-=|.|.| .++..+|++|+ +++..|+++ -.....+.++..| ++....+|+.+.. -
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 456789999999998 57888888888 899999999 6666666666665 5888888987753 1
Q ss_pred CCCceeEEEEe
Q 015306 186 PVTKVDIIISE 196 (409)
Q Consensus 186 ~~~~~DvVvs~ 196 (409)
.-+.+|++|.+
T Consensus 111 e~G~V~ILVNN 121 (300)
T KOG1201|consen 111 EVGDVDILVNN 121 (300)
T ss_pred hcCCceEEEec
Confidence 24789999986
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.99 Score=42.80 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=38.6
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHH
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (409)
....+|.+|.-.|+|. |+...+-++ +|+.+++|||+++ -.+.|++.
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 4568899999999987 666666677 7999999999999 88888764
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=88.44 E-value=2.2 Score=36.90 Aligned_cols=100 Identities=21% Similarity=0.170 Sum_probs=59.3
Q ss_pred EEcCCCChHHHHHHH-cC-CCEEEEEec--HH-HHHH---HHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015306 128 DVGAGTGILSLFCAK-AG-AAHVYAVEC--SQ-MANM---AKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (409)
Q Consensus 128 DlGcG~G~l~~~la~-~g-~~~V~~vD~--s~-~~~~---a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs 195 (409)
=||=|.=.++..+++ .+ ...++|.-. .+ +.+. +..++....-.+.......|++.+. ....+||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 366676677888888 45 556666544 33 3322 2233333211122334556776665 23578999999
Q ss_pred ecccccc----------cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFL----------LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l----------~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+.... .+...+..++..+.++|+++|.+..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhV 123 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHV 123 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 8643320 1123457888889999999998873
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=88.22 E-value=1.9 Score=40.17 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=49.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc------CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (409)
+...+.+.-.+.++..++|+|||.|.++.++++. +...++.||-.. -. .+-..+........++=+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence 3444554445567789999999999999999984 245899999865 22 222223332211246777888888
Q ss_pred ccC
Q 015306 183 IEL 185 (409)
Q Consensus 183 ~~~ 185 (409)
+.+
T Consensus 85 l~l 87 (259)
T PF05206_consen 85 LDL 87 (259)
T ss_pred cch
Confidence 764
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=88.03 E-value=1.8 Score=35.45 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=36.8
Q ss_pred CCCEEEEEcCCCC-hHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEe
Q 015306 122 KDKVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G-~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~ 196 (409)
...+|+|||-|.= ..+..|.++|. .|+++|+.+. .+. ..+.++..|+.+..+. -..+|+|.|-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSi 77 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSI 77 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-----cCcceeeecccCCCHHHhcCCcEEEEe
Confidence 4449999999985 45667777885 9999999882 111 2367888898875432 2579999983
|
; PDB: 2K4M_A. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=3.1 Score=41.73 Aligned_cols=84 Identities=26% Similarity=0.281 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..|++|+-+|+|. |......++ .|+ +|+.+|.++ ....+.. .|. ++. ++.+. + ..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea-l--~~aDVVI~aT 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF----RVM--TMEEA-A--ELGDIFVTAT 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC----Eec--CHHHH-H--hCCCEEEECC
Confidence 5899999999986 433333334 566 899999998 5433322 132 221 33332 1 4689998631
Q ss_pred ccccccChhHHHHHH-HHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (409)
+.. .++ ......+|+|++++-
T Consensus 276 --------G~~-~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 276 --------GNK-DVITAEHMEAMKDGAILAN 297 (425)
T ss_pred --------CCH-HHHHHHHHhcCCCCCEEEE
Confidence 122 233 355678999998873
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=87.59 E-value=2.4 Score=40.87 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=56.3
Q ss_pred CCCCC--CEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCce
Q 015306 119 FLFKD--KVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKV 190 (409)
Q Consensus 119 ~~~~~--~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~ 190 (409)
...++ .+||-.|+ |.|..+..+|+ .|+.+|++++.++ ..+.+++. .|....+.....++.+ + ....+.+
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHCCCCc
Confidence 34454 89999986 45778888888 5766899999888 66666543 2432211111112111 0 0112569
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+.. ++ . . . +....+.|+++|.++.
T Consensus 226 d~vid~-~g----~-~---~-~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 226 DVYFDN-VG----G-E---I-SDTVISQMNENSHIIL 252 (345)
T ss_pred eEEEEC-CC----c-H---H-HHHHHHHhccCCEEEE
Confidence 999852 11 1 1 1 2445678999999873
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=87.46 E-value=3.7 Score=32.68 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=49.6
Q ss_pred CCCChHHHHHHH---cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEecccccc
Q 015306 131 AGTGILSLFCAK---AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFL 202 (409)
Q Consensus 131 cG~G~l~~~la~---~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs~~~~~~l 202 (409)
||.|.++..+++ .+...|+.+|.++ .++.+++. + +.++.+|..+.. ..-.++|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 455667776666 2345899999999 87766542 2 678999998764 2346899888732
Q ss_pred cChhHHHHHHHHHHhcccCCeEEE
Q 015306 203 LFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
........+....+-+.|...++
T Consensus 71 -~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 71 -DDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp -SSHHHHHHHHHHHHHHTTTSEEE
T ss_pred -CCHHHHHHHHHHHHHHCCCCeEE
Confidence 11222222333345566766655
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.11 E-value=3.2 Score=40.21 Aligned_cols=96 Identities=25% Similarity=0.182 Sum_probs=57.6
Q ss_pred ccCCCCCCEEEEEcCCC--ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCc
Q 015306 117 NKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTK 189 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~--G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~ 189 (409)
.....++.+||-.|+.. |.+++.+|+ .|+ .++++-.++ -.+.+++ .|-+..+.+...|+.+-. .....
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 45567899999999544 688899999 677 555555555 4445444 343333444444433321 12247
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+|+... +. ..+....+.|+++|.++.
T Consensus 212 vDvv~D~v------G~----~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 212 VDVVLDTV------GG----DTFAASLAALAPGGRLVS 239 (326)
T ss_pred ceEEEECC------CH----HHHHHHHHHhccCCEEEE
Confidence 99999632 11 223445578899999873
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.75 E-value=4.2 Score=39.25 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=60.3
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH-------HcCCC-----CcEEEEEcccccccCCCC
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE-------ANGFS-----NVITVLKGKIEEIELPVT 188 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~~-----~~i~~~~~d~~~~~~~~~ 188 (409)
++|--||+|+ ..++..++..|. +|+..|.++ .++.++..+. ..++. .++++.. ++.+. -.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a---v~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC---VA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH---hc
Confidence 5799999995 356666777776 999999998 7776655433 12211 2233221 22221 15
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..|+|+-.. ......-..++..+.+.++|+.+|--+
T Consensus 83 ~aDlViEav----pE~l~vK~~lf~~l~~~~~~~aIlaSn 118 (321)
T PRK07066 83 DADFIQESA----PEREALKLELHERISRAAKPDAIIASS 118 (321)
T ss_pred CCCEEEECC----cCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 689998532 333345567788888999998855433
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.73 E-value=1.1 Score=43.62 Aligned_cols=96 Identities=22% Similarity=0.252 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-c-CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-E-LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~~D 191 (409)
....++.+||-.|+|. |..+..+|+ .|...|++++.++ ..+.+++ .|....+.....+... + . .....+|
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCc
Confidence 4567788999998763 566666777 6787899999988 7776664 3432111111111111 1 0 1234699
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++... .+ ...+....+.|+++|+++
T Consensus 238 ~vld~~-----g~----~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 238 AVIIAG-----GG----QDTFEQALKVLKPGGTIS 263 (351)
T ss_pred EEEECC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 998521 11 133456668899999887
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.60 E-value=7.2 Score=36.73 Aligned_cols=96 Identities=19% Similarity=0.265 Sum_probs=58.8
Q ss_pred EEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHH-------HHcCC-C--------CcEEEEEcccccccC
Q 015306 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIV-------EANGF-S--------NVITVLKGKIEEIEL 185 (409)
Q Consensus 125 ~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~-------~~~~~-~--------~~i~~~~~d~~~~~~ 185 (409)
+|--||+|. +.++..+++.|. +|+++|.++ .++.+++.+ ...+. . .++++ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 578889985 566777777776 899999999 876555322 22231 1 12332 223322
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
-..+|+|+-.. .........++..+.+.++|+..+.....
T Consensus 80 -~~~aDlVi~av----~e~~~~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 -LKDADLVIEAA----TENMDLKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred -hccCCeeeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 25689998532 12222335788888888999887764443
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=86.21 E-value=2.6 Score=42.61 Aligned_cols=85 Identities=25% Similarity=0.347 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..|++|+-+|+|. |......++ .|+ +|+++|.++ ....+.. .|. .+. ++.+. + ...|+|+...
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G~----~vv--~leEa-l--~~ADVVI~tT 317 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EGY----QVL--TLEDV-V--SEADIFVTTT 317 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cCC----eec--cHHHH-H--hhCCEEEECC
Confidence 6789999999996 433333334 566 899999988 5443322 232 222 33332 1 4689998621
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+....+.......+|+||+++-
T Consensus 318 --------Gt~~vI~~e~L~~MK~GAiLiN 339 (477)
T PLN02494 318 --------GNKDIIMVDHMRKMKNNAIVCN 339 (477)
T ss_pred --------CCccchHHHHHhcCCCCCEEEE
Confidence 1111222445578999999884
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=86.20 E-value=0.53 Score=37.48 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=27.1
Q ss_pred ceeEEEEeccc---ccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMG---YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~---~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+||+|+|-.+. +.-.+..-+..+++.+..+|+|||.+|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 58999994221 1112334567899999999999999984
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=85.70 E-value=5.5 Score=39.70 Aligned_cols=85 Identities=29% Similarity=0.282 Sum_probs=52.0
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
...|++|+-+|+|. |......++ .|+ +|+++|.++ ....|.. .|. .+. ++.+. . ...|+|++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~----~G~----~v~--~leea-l--~~aDVVIta 257 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAM----DGF----RVM--TMEEA-A--KIGDIFITA 257 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHh----cCC----EeC--CHHHH-H--hcCCEEEEC
Confidence 36899999999997 544444455 566 899999988 5433332 232 222 23332 2 467998863
Q ss_pred cccccccChhHHHHHH-HHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (409)
. +.. .++ ......+|+|++++.
T Consensus 258 T--------G~~-~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 258 T--------GNK-DVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred C--------CCH-HHHHHHHHhcCCCCcEEEE
Confidence 1 122 233 345678999998884
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.61 E-value=9 Score=36.30 Aligned_cols=96 Identities=20% Similarity=0.310 Sum_probs=60.8
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cCCC---------CcEEEEEccccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGFS---------NVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~~~---------~~i~~~~~d~~~~~ 184 (409)
.+|--||+|+ +.++..++..|. .|+.+|.++ .++.+++.+.. .|.- .++++ ..|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 4788999996 456667777776 899999999 88876655432 1210 12222 2333221
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcc-cCCeEEEccC
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVLPDK 229 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lip~~ 229 (409)
..+|+|+-.. ......-..++..+.+.+ +|+.++.-++
T Consensus 83 ---~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 83 ---ADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred ---CCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 5689998532 334444556777788888 7787776443
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=85.54 E-value=1.2 Score=44.24 Aligned_cols=102 Identities=25% Similarity=0.178 Sum_probs=59.0
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc---cccc-cc--CCCC
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KIEE-IE--LPVT 188 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~~--~~~~ 188 (409)
....++.+||-.|+|. |.++..+|+ .|+..|+++|.++ -++.|++. |.. .+... +..+ +. ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecCCcccHHHHHHHHcCCC
Confidence 3467788888888865 566666777 6887788888888 77777653 431 12211 1111 11 1224
Q ss_pred ceeEEEEecccccc------cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFL------LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l------~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+|+++-- .+.-- .........+....+++++||.++.
T Consensus 254 g~Dvvid~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 254 EVDCAVDC-VGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred CCcEEEEC-CCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 68998852 12100 0001112355666689999999874
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.48 E-value=5.6 Score=37.70 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=56.9
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc----------CC---------CCcEEEEEcccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN----------GF---------SNVITVLKGKIE 181 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~----------~~---------~~~i~~~~~d~~ 181 (409)
++|.-||+|. +.++..++..|. +|+.+|.++ .++.+++.+... +. ..++.+. .+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899995 356666777776 899999999 887765544321 11 0112221 1221
Q ss_pred cccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 182 EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 182 ~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
. -..+|+|+-.. .........++..+.+.++|+.+++
T Consensus 82 ~----~~~aDlVieav----~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEAV----PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEcC----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 14589988632 2222335677778888888887766
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=85.48 E-value=2 Score=38.49 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecH
Q 015306 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (409)
Q Consensus 122 ~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (409)
...+||-+|||. | ..+..|++.|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 567899999995 3 56777888899999999987
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=85.38 E-value=3.9 Score=39.70 Aligned_cols=44 Identities=34% Similarity=0.364 Sum_probs=34.7
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (409)
....++.+||-.|||. |.++..+|+ .|+ +|++++.++ .++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4567789999999965 677777777 566 799999998 8777754
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.27 E-value=1.3 Score=43.53 Aligned_cols=93 Identities=25% Similarity=0.328 Sum_probs=56.6
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc----cc-CCCCc
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTK 189 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~ 189 (409)
....++.+||-.|+|. |.++..+|+ .|+.+|++++.++ ..+.+++. +.. .++..+-.+ +. .....
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~---~~i~~~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT---HVINPKEEDLVAAIREITGGG 254 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc---EEecCCCcCHHHHHHHHhCCC
Confidence 3456788999998764 666777777 6887899999998 77666542 321 222211111 10 11356
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+|+|+-.. + .. ..+....+.|+++|.++
T Consensus 255 ~d~vld~~-g----~~----~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 255 VDYALDTT-G----VP----AVIEQAVDALAPRGTLA 282 (365)
T ss_pred CcEEEECC-C----Cc----HHHHHHHHHhccCCEEE
Confidence 99998521 1 11 23455567889999887
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.14 E-value=5.1 Score=39.02 Aligned_cols=95 Identities=21% Similarity=0.171 Sum_probs=57.6
Q ss_pred cCCCCCCEEEEEcC-C-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-cccc-c-cCCCCce
Q 015306 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEE-I-ELPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~~ 190 (409)
....+|.+||-.|+ | .|.++..+|+ .|+ +|++++.++ ..+.+++. .|....+..... +..+ + ....+.+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 45678999999998 3 5788888888 566 799999888 76665532 343221211111 2211 1 0112469
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|+|+-. ++ . ..+....+.|+++|.++
T Consensus 230 D~v~d~-vG-------~--~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 230 DIYFDN-VG-------G--DMLDAALLNMKIHGRIA 255 (348)
T ss_pred EEEEEC-CC-------H--HHHHHHHHHhccCCEEE
Confidence 999842 11 1 23455568899999987
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.95 E-value=12 Score=33.63 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC-----C
Q 015306 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP-----V 187 (409)
Q Consensus 122 ~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 187 (409)
++++||-.|++.| .++..+++.|+ +|++++-++ ....+.+..... .++.++.+|+.+.. +. -
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5679999998754 23334445566 899999888 665554444332 24788889887642 00 1
Q ss_pred CceeEEEEec
Q 015306 188 TKVDIIISEW 197 (409)
Q Consensus 188 ~~~DvVvs~~ 197 (409)
+.+|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 4578888754
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=84.69 E-value=7.1 Score=37.63 Aligned_cols=89 Identities=17% Similarity=0.012 Sum_probs=54.7
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+||-.|+|. |.++..+|+ .|+ +|++++.++ -.+.+++ .|... ++. ..+. ..+.+|+++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~--~~~~~d~~i 228 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDT--PPEPLDAAI 228 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--cccc--CcccceEEE
Confidence 4567889999999763 556666777 566 799999998 7776665 34321 111 1111 124578765
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-.. . .. ..+....+.|++||+++.
T Consensus 229 ~~~----~----~~-~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 229 LFA----P----AG-GLVPPALEALDRGGVLAV 252 (329)
T ss_pred ECC----C----cH-HHHHHHHHhhCCCcEEEE
Confidence 311 0 11 235555688999999873
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.57 E-value=6.4 Score=37.21 Aligned_cols=94 Identities=21% Similarity=0.159 Sum_probs=56.7
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--------CCC---------CcEEEEEcccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--------GFS---------NVITVLKGKIEEI 183 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--------~~~---------~~i~~~~~d~~~~ 183 (409)
.+|.-||+|. +.++..+++.|. +|+.+|.++ .++.+++.+... .+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 4688899986 245556666766 899999999 888776653211 110 123322 233221
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
-...|+|+.... ........++..+...++++.++.
T Consensus 82 ---~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 ---VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred ---hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 156899986431 222345667777878887777654
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=84.51 E-value=2 Score=41.47 Aligned_cols=95 Identities=27% Similarity=0.363 Sum_probs=55.3
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c--cCCCCceeE
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I--ELPVTKVDI 192 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~~Dv 192 (409)
...++.+||..|+|. |..+..+|+ .|...|++++.++ ..+.+++. +....+.....+..+ + ..+.+.+|+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 456788999987753 666677777 5656899998877 66665542 321111111111111 1 022357999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++... + . ...+....+.|+++|.++
T Consensus 240 vld~~-g----~----~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 240 VIEAV-G----F----EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred EEEcc-C----C----HHHHHHHHHHhhcCCEEE
Confidence 98521 1 1 124555568889999987
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.50 E-value=4 Score=39.93 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=50.9
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HH-HHHHHHHHHcCCCCcEEEEE-cccccccCCCCceeEEE
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MA-NMAKQIVEANGFSNVITVLK-GKIEEIELPVTKVDIII 194 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~-~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~DvVv 194 (409)
..++.+||-.|+|. |.++..+|+ .|+ +|++++.++ .. ..+++ .|.. .++. .+...+....+.+|+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINR----LGAD---SFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHh----CCCc---EEEcCCCHHHHHhhcCCCCEEE
Confidence 45788999999875 667777777 566 788888776 33 33322 3432 1221 11111111113589888
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
- ..+ .. ..+....+.|++||.++
T Consensus 253 d-~~g-------~~-~~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 253 D-TVS-------AV-HALGPLLGLLKVNGKLI 275 (360)
T ss_pred E-CCC-------CH-HHHHHHHHHhcCCcEEE
Confidence 4 221 11 23444568899999987
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.38 E-value=4.7 Score=39.08 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=55.8
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-cc--CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~~D 191 (409)
....++.+||-.|+|. |.++..+++ .|+.+|++++.++ ..+.+++. |....+.....+..+ +. .+...+|
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCC
Confidence 4567788999998653 455555666 5776899999888 77776542 332111111111111 10 1224599
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+-.. + . ...+....+.|+++|.++-
T Consensus 244 ~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 244 VSFDCA-G----V----QATLDTAIDALRPRGTAVN 270 (351)
T ss_pred EEEECC-C----C----HHHHHHHHHhccCCCEEEE
Confidence 998521 1 1 1234555678999998873
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.34 E-value=1.6 Score=43.03 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 122 ~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
++.+|+-+|+|. |..+...++ .|+ +|+.+|.++ .++.+.... + ..+.....+..++.-.-..+|+|+....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 556799999984 555555555 577 799999988 655544332 1 1122211222222111256899997421
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
......+.-+-....+.++||++++
T Consensus 240 ---~~g~~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 240 ---IPGAKAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred ---cCCCCCCcCcCHHHHhcCCCCCEEE
Confidence 1000011111233345679998876
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.23 E-value=6 Score=37.86 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (409)
..++++|-.|++.| .++..+++.|+ +|+.+.-++ -.+.+.+.+....-..++.++.+|+.+.. -.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 45789999998876 34555566676 888888877 55554444433221235888999987753 01
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.++.|++|.+.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 35799999864
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=84.13 E-value=6.2 Score=38.00 Aligned_cols=96 Identities=20% Similarity=0.148 Sum_probs=57.4
Q ss_pred ccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-cccc-c-cCCCCc
Q 015306 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEE-I-ELPVTK 189 (409)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~ 189 (409)
.....+|.+||-.|+ |.|.++..+|+ .|+ +|+++..++ ..+.+++. .|....+..... +..+ + ......
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCC
Confidence 345678999999996 35677777887 566 799988887 76666542 233221211111 2211 0 011257
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+|+|+-. ++ . ..+....+.|+++|.++
T Consensus 222 vd~v~d~-~g-------~--~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 222 IDIYFDN-VG-------G--KMLDAVLLNMNLHGRIA 248 (338)
T ss_pred cEEEEEC-CC-------H--HHHHHHHHHhccCcEEE
Confidence 9999842 11 1 23445568899999987
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.11 E-value=4.3 Score=39.22 Aligned_cols=97 Identities=25% Similarity=0.276 Sum_probs=57.3
Q ss_pred ccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc----cccc--cCCC
Q 015306 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK----IEEI--ELPV 187 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d----~~~~--~~~~ 187 (409)
.....++.+||-.|+|. |.++..+|+ .|+..|++++.++ ..+.+++. +....+.....+ ...+ ....
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCC
Confidence 35567888999988765 666677777 5775599998887 77666542 332111111111 1111 1233
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..+|+|+... + . ...+....+.|+++|.++
T Consensus 233 ~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 233 KGPDVVIECT-G----A----ESCIQTAIYATRPGGTVV 262 (343)
T ss_pred CCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 5699998521 1 1 123455568899999887
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.93 E-value=0.98 Score=45.33 Aligned_cols=106 Identities=17% Similarity=0.038 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-------CCCCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-------LPVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D 191 (409)
..+..+|-+|-|.|.+..++-. .+..++++|++++ +++.|.+++....- ++..+.-.|..+.. ..+..||
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCc
Confidence 3456788899999988887766 5667999999999 99999988743221 12233333322211 1346799
Q ss_pred EEEEecc--c-ccccC---hhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWM--G-YFLLF---ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~--~-~~l~~---~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++....= . +.+.. .-.-..++..+...|.|.|.++.
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i 414 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFII 414 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEE
Confidence 9997521 1 11110 11225677888899999999864
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=83.75 E-value=7.5 Score=37.15 Aligned_cols=95 Identities=17% Similarity=0.067 Sum_probs=57.3
Q ss_pred ccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ccccc--cCCCCc
Q 015306 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEI--ELPVTK 189 (409)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~--~~~~~~ 189 (409)
.....++.+||-.|+ |.|.++..+|+ .|+ +|++++.++ ..+.+++ .|...-+..... +..+. ....+.
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCC
Confidence 345678899999984 45778888888 566 799999888 7766654 343221111111 11111 112246
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+|+|+-. ++ . . .+....+.|+++|+++
T Consensus 208 vdvv~d~-~G----~-~----~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 208 YDCYFDN-VG----G-E----FSNTVIGQMKKFGRIA 234 (325)
T ss_pred eEEEEEC-CC----H-H----HHHHHHHHhCcCcEEE
Confidence 9999842 11 1 1 2345568899999987
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.75 E-value=11 Score=35.70 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=59.1
Q ss_pred CEEEEEcCCCC--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------CC-C--------CcEEEEEccccccc
Q 015306 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------GF-S--------NVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~~-~--------~~i~~~~~d~~~~~ 184 (409)
++|.-||+|.= .++..+++.|. .|+.+|.++ .++.+.+.+..+ +. + .++++. .+...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHH--
Confidence 47888999862 45666666766 899999999 877765433321 21 1 123332 23322
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
-..+|+|+... .........++..+...++|+.+++-.+.
T Consensus 81 --~~~aD~Vieav----pe~~~~k~~~~~~l~~~~~~~~ii~s~ts 120 (292)
T PRK07530 81 --LADCDLVIEAA----TEDETVKRKIFAQLCPVLKPEAILATNTS 120 (292)
T ss_pred --hcCCCEEEEcC----cCCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 15689998632 22223445677788888999987764433
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.34 E-value=8.2 Score=32.39 Aligned_cols=81 Identities=25% Similarity=0.313 Sum_probs=44.1
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
+..++........+++|+-+|||. +.++..+++.|...|+.+|.++ ..+.+.+...... +.....+..+.
T Consensus 6 ~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~--- 78 (155)
T cd01065 6 FVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL--- 78 (155)
T ss_pred HHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc---
Confidence 344454433335678999999963 1233333344556899999987 5554443332211 11122233222
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+.+|+|++..
T Consensus 79 ~~~~Dvvi~~~ 89 (155)
T cd01065 79 LAEADLIINTT 89 (155)
T ss_pred cccCCEEEeCc
Confidence 26799999853
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.29 E-value=11 Score=37.16 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=62.9
Q ss_pred EEEEEcCCCChHHHHHHHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCc-EEEEEcccccccCCCCceeEEEEeccccc
Q 015306 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
.||-++-.-|.++..++..+. +.+ .+. .-...++|+..|+++.. ++++.. .+ +++ +.+|+|+.-+
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~---~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~-~~~-~~~d~vl~~~---- 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP---YSI-GDSYISELATRENLRLNGIDESSVKFLDS--TA-DYP-QQPGVVLIKV---- 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC---Cee-ehHHHHHHHHHHHHHHcCCCcccceeecc--cc-ccc-CCCCEEEEEe----
Confidence 799999999999999997544 233 223 44456888999988643 555432 22 234 6699998654
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEE
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.-.-..++..+..+...|.||+.+|
T Consensus 115 PK~~~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 115 PKTLALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred CCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 3333567778888999999999987
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.25 E-value=3.3 Score=40.28 Aligned_cols=75 Identities=28% Similarity=0.287 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH----------------------HHHHHHHHHHHcCCCCcEEEEE
Q 015306 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ----------------------MANMAKQIVEANGFSNVITVLK 177 (409)
Q Consensus 122 ~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~----------------------~~~~a~~~~~~~~~~~~i~~~~ 177 (409)
..++||-||||. | .++..|++.|..+++.+|.+. -++.|++.+....-.-.++.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 457899999995 3 567778889999999999862 2344445554443333356666
Q ss_pred cccccccCC--CCceeEEEEe
Q 015306 178 GKIEEIELP--VTKVDIIISE 196 (409)
Q Consensus 178 ~d~~~~~~~--~~~~DvVvs~ 196 (409)
.++....+. -..+|+|+..
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 103 TDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred ccCCHHHHHHHhcCCCEEEEc
Confidence 555321111 2569999973
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=83.10 E-value=12 Score=36.25 Aligned_cols=94 Identities=21% Similarity=0.250 Sum_probs=53.3
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccc----cc-c-CCCCce
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE----EI-E-LPVTKV 190 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~----~~-~-~~~~~~ 190 (409)
..++.+||-.|+|. |..+..+|+ .|+++|++++.++ ..+.+++ .|....+.....+.. .+ . .+...+
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 34788999988653 455556666 5666899999888 6665543 343221111111111 01 0 122569
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|+|+... + . ...+....+.|+++|+++
T Consensus 251 d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 277 (361)
T cd08231 251 DVVIEAS-G----H----PAAVPEGLELLRRGGTYV 277 (361)
T ss_pred cEEEECC-C----C----hHHHHHHHHHhccCCEEE
Confidence 9998521 1 1 123445568899999987
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.08 E-value=5.8 Score=37.53 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=55.4
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cC-CC--------CcEEEEEccccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NG-FS--------NVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~-~~--------~~i~~~~~d~~~~~ 184 (409)
++|.-||+|. +.++..+++.|. +|+.+|.++ .++.+.+.... .+ +. .++++. .+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 3688899985 345666667766 899999999 88877654321 11 00 112222 222221
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-...|+|+.... ........++..+.+.++|+.++..
T Consensus 79 --~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 79 --VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred --hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 256899986421 2222344666777788888876643
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=82.96 E-value=6.5 Score=37.46 Aligned_cols=96 Identities=23% Similarity=0.156 Sum_probs=57.6
Q ss_pred ccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCce
Q 015306 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKV 190 (409)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~ 190 (409)
.....+|.+||-.|+ |.|.++..+|+ .|+ +|++++.++ ..+.+++ .|....+.....+..+ + ....+.+
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCCCc
Confidence 345678899999984 44677777888 566 799999888 7777655 3432211111112111 1 0112569
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+.. .+ . ..+....+.|+++|.++.
T Consensus 213 d~vld~-~g-------~--~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 213 DCYFDN-VG-------G--EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred EEEEEC-CC-------H--HHHHHHHHhhccCCEEEE
Confidence 999842 11 1 234555688999999873
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=82.77 E-value=6.5 Score=37.02 Aligned_cols=83 Identities=23% Similarity=0.223 Sum_probs=50.5
Q ss_pred EEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 125 ~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
+|.-||+|. |.++..+.+.|. +|+++|.++ .++.+.+. +. +.....+.. . -..+|+|+....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~~---~-~~~aDlVilavp--- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL---VDEASTDLS---L-LKDCDLVILALP--- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC---cccccCCHh---H-hcCCCEEEEcCC---
Confidence 577788886 456667767765 899999998 77666442 22 211111211 1 156899986431
Q ss_pred ccChhHHHHHHHHHHhcccCCeEE
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIV 225 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~l 225 (409)
......++..+...++++.++
T Consensus 67 ---~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 ---IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---HHHHHHHHHHHHHhCCCCcEE
Confidence 234456677777777777544
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=82.61 E-value=9.1 Score=33.82 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=70.6
Q ss_pred cChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH----cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEE
Q 015306 102 KDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175 (409)
Q Consensus 102 ~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~----~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~ 175 (409)
+.....-.|.+.|.+ .++..|++.|.-.|..+++.|. .| ..+|+++|++- -++.+... . .+|.+
T Consensus 53 k~p~D~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f 122 (237)
T COG3510 53 KSPSDMWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILF 122 (237)
T ss_pred CCHHHHHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEE
Confidence 344445566666553 4667899999999987777665 35 24899999987 54333221 2 45999
Q ss_pred EEcccccccC-------CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 176 LKGKIEEIEL-------PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 176 ~~~d~~~~~~-------~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++++..+... ..+.--+.++. +. -++-...-+-++...++|.-|-+++...
T Consensus 123 ~egss~dpai~eqi~~~~~~y~kIfvil--Ds-dHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 123 IEGSSTDPAIAEQIRRLKNEYPKIFVIL--DS-DHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EeCCCCCHHHHHHHHHHhcCCCcEEEEe--cC-CchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 9999988642 12222333331 11 2222333355677788898898877543
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=82.58 E-value=7.2 Score=42.10 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=65.5
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEccccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (409)
++|.-||+|+ ..++..++..|. .|+.+|.++ .++.+.+.+... + + -.++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 5899999998 466777778877 999999999 888776654321 1 1 1234432 233222
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
...|+|+=.. ......-..++..+.++++|+.++.-++.+
T Consensus 391 ---~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 391 ---ERVDVVVEAV----VENPKVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred ---cCCCEEEecc----cCcHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 5789888422 344455678899999999999887655433
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=82.14 E-value=9 Score=36.61 Aligned_cols=93 Identities=26% Similarity=0.278 Sum_probs=56.3
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc----cCCCCce
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~ 190 (409)
....++.+||.+|+|. |..+..+++ .|...|++++.++ ..+.+++. +.. .++..+-.+. ......+
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCCCC
Confidence 4567888999998653 556666666 5665589999888 77766442 322 2222221111 1123579
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|+++... + . ...+....+.|+++|.++
T Consensus 228 d~v~~~~-~----~----~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 228 DVVIEAT-G----V----PKTLEQAIEYARRGGTVL 254 (334)
T ss_pred cEEEECC-C----C----hHHHHHHHHHHhcCCEEE
Confidence 9998621 1 1 134455568889999887
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=82.10 E-value=7.3 Score=42.00 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=65.5
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEccccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (409)
++|--||+|+ +.++..++..|. .|+.+|.++ .++.+++.+... + + -.+|++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG-- 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 5799999997 366667777876 999999999 888776655421 1 1 0223332 12211
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
-..+|+|+=. .......-..++.++.++++|+.++.-++.+
T Consensus 390 --~~~aDlViEa----v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 390 --FDNVDIVVEA----VVENPKVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred --hcCCCEEEEc----CcccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 2578999843 2444455678899999999999888755443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=82.02 E-value=5.8 Score=42.92 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=65.9
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-CC--------CcEEEEEccccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS--------NVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 184 (409)
++|--||+|+ +.++..++..|. .|+.+|.++ .++.+.+.+... + +. .++++. .|...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG-- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 5799999997 356667777776 999999999 988876665432 1 11 234332 22222
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
-...|+|+= ........-..++.++.++++|+.++.-++.+
T Consensus 412 --~~~aDlViE----Av~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 412 --FKNADMVIE----AVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred --hccCCeehh----hccccHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 257898883 22444456678899999999999988755433
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=81.72 E-value=3 Score=41.14 Aligned_cols=96 Identities=27% Similarity=0.263 Sum_probs=55.1
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc---cc----ccccCCC
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KI----EEIELPV 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~----~~~~~~~ 187 (409)
....++.+||-.|+|. |..++.+|+ .|+.+|++++.++ ..+.+++ .|....+..... +. ..+ .+.
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~-~~g 273 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEV-TKG 273 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHh-cCC
Confidence 3567788898887754 455555666 5776899999888 6655554 343221111110 11 111 223
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..+|+|+.. .+ .....+....+.|+++|+++
T Consensus 274 ~gvDvvld~-~g-------~~~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 274 WGADIQVEA-AG-------APPATIPQMEKSIAINGKIV 304 (384)
T ss_pred CCCCEEEEC-CC-------CcHHHHHHHHHHHHcCCEEE
Confidence 569999852 11 11233455567888999987
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.70 E-value=3.3 Score=35.04 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=31.1
Q ss_pred EEcCCCC--hHHHHHH--Hc-CCCEEEEEecHH-HHHHHHHH--HHHcCCCCcEEEEEccc
Q 015306 128 DVGAGTG--ILSLFCA--KA-GAAHVYAVECSQ-MANMAKQI--VEANGFSNVITVLKGKI 180 (409)
Q Consensus 128 DlGcG~G--~l~~~la--~~-g~~~V~~vD~s~-~~~~a~~~--~~~~~~~~~i~~~~~d~ 180 (409)
|||++.| .....++ .. +..+|+++|+++ .++..+++ +..+.....+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 4444443 33 356899999999 99999988 66554433355554443
|
; PDB: 2PY6_A. |
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=81.65 E-value=3.4 Score=40.48 Aligned_cols=96 Identities=22% Similarity=0.215 Sum_probs=55.7
Q ss_pred ccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--cc----ccccCCC
Q 015306 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KI----EEIELPV 187 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~----~~~~~~~ 187 (409)
.....++.+||-.|+|. |.++..+|+ .|+..|++++.++ ..+.+++ .|....+..... +. .++ .+
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~-~~- 251 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEM-TD- 251 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHH-hC-
Confidence 34567888999988754 455556666 6777799999887 7776644 233211111111 11 111 23
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhccc-CCeEEEc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLV-DDGIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~lip 227 (409)
+.+|+|+.. .+ . ...+....+.|+ ++|.++.
T Consensus 252 ~~~d~vid~-~g----~----~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 252 GGVDYAFEV-IG----S----ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred CCCcEEEEC-CC----C----HHHHHHHHHHhccCCCEEEE
Confidence 569999842 11 1 123344557788 9999873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=81.64 E-value=9 Score=41.31 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=65.0
Q ss_pred CEEEEEcCCC--ChHHHHHH-HcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcccccc
Q 015306 124 KVVLDVGAGT--GILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEI 183 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~ 183 (409)
++|.-||+|+ ..++..++ ..|. .|+.+|.++ .++.+.+.+... + + .++|++. .|...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~- 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG- 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH-
Confidence 6899999998 35666666 5666 999999999 888876655331 1 1 1234433 22221
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
-..+|+|+=. .......-..++..+.+.++|+.++.-++.+
T Consensus 387 ---~~~aDlViEa----v~E~~~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 387 ---FKHADVVIEA----VFEDLALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred ---hccCCEEeec----ccccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 2568998842 2444455678899999999999888755433
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.50 E-value=6.4 Score=37.65 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=54.9
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC----CcEEEEEcccccccCCCCceeEEEEe
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS----NVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
.+|+-+|+|. |.++..|++.|. .|+.++-++ .++..++. .|+. .....+...... +.+.+.+|+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC-cccccccCEEEEE
Confidence 4799999996 577888888876 799999876 55544331 2221 000111100000 1112579998863
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. -.......+..+..++.++..+++
T Consensus 78 v------K~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 78 C------KAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred C------CHHhHHHHHHHHHhhCCCCCEEEE
Confidence 1 112455677788888988887764
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.42 E-value=7.9 Score=36.98 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=51.6
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.+|.-||+|. +.++..+.+.|. .+|+++|.++ .++.+++ .++.. . ...+..+. -..+|+|+....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~---~~~aDvViiavp- 75 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAAEA---VKGADLVILCVP- 75 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH---hcCCCEEEECCC-
Confidence 5789999886 345555555664 4899999998 7666543 33311 1 11222221 156899986432
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
......++..+...+++|+.++
T Consensus 76 -----~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 76 -----VGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred -----HHHHHHHHHHHHhhCCCCCEEE
Confidence 1234556666667788887654
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.33 E-value=16 Score=34.51 Aligned_cols=74 Identities=28% Similarity=0.433 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC----
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP---- 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 186 (409)
.++++||-.|++.| .++..+++.|+ +|+.++.++ ..+...+.+...+ .++.++.+|+.+.. +.
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999998765 34445555666 788887653 3333333344333 35788899987643 11
Q ss_pred -CCceeEEEEec
Q 015306 187 -VTKVDIIISEW 197 (409)
Q Consensus 187 -~~~~DvVvs~~ 197 (409)
.+++|+||...
T Consensus 121 ~~~~iD~lI~~A 132 (290)
T PRK06701 121 ELGRLDILVNNA 132 (290)
T ss_pred HcCCCCEEEECC
Confidence 14689998753
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=81.30 E-value=13 Score=34.48 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=51.5
Q ss_pred HHHHHHHh-ccCCCCCCEEEEEcCCCC---hH-HHHHHH-cC-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 015306 109 SYQNVIYQ-NKFLFKDKVVLDVGAGTG---IL-SLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE 181 (409)
Q Consensus 109 ~~~~~l~~-~~~~~~~~~VLDlGcG~G---~l-~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~ 181 (409)
.+-+.|.. ........+||.+|+|+- .- +..+.+ .+ .+.++-.|+.+. .++.-..+.+|..
T Consensus 47 QLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~------------vSDa~~~~~~Dc~ 114 (299)
T PF06460_consen 47 QLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY------------VSDADQSIVGDCR 114 (299)
T ss_dssp HHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--------------B-SSSEEEES-GG
T ss_pred HHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh------------ccccCCceecccc
Confidence 33444433 244566789999999973 12 233334 22 236666776551 1122356778888
Q ss_pred cccCCCCceeEEEEecccc--------cccChhHHHHHHHHHHhcccCCeEEE
Q 015306 182 EIELPVTKVDIIISEWMGY--------FLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 182 ~~~~~~~~~DvVvs~~~~~--------~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+..+ .++|+|+|++-+. -...+.-...+..-++.-|+-||.+.
T Consensus 115 t~~~~-~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSva 166 (299)
T PF06460_consen 115 TYMPP-DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVA 166 (299)
T ss_dssp GEEES-S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEE
T ss_pred ccCCC-CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEE
Confidence 88766 9999999986310 11223445566677778899999876
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=81.29 E-value=16 Score=32.68 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCC--ChHHHHHHHcCCCEEEEEecH
Q 015306 122 KDKVVLDVGAGT--GILSLFCAKAGAAHVYAVECS 154 (409)
Q Consensus 122 ~~~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s 154 (409)
...+|+-+|||. +..+..+++.|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456899999996 356778888999899999988
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component | Back alignment and domain information |
|---|
Probab=81.07 E-value=7.9 Score=30.05 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=36.7
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
++|| +-||+|..+-.++. ..++.+..+|++ +++...++.++......+|+|+..
T Consensus 4 ~~IL-l~C~~G~sSS~l~~----------------k~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~ 57 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN----------------KMNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLA 57 (95)
T ss_pred cEEE-EECCCchhHHHHHH----------------HHHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEEC
Confidence 4566 56999866655544 345666777875 788888877764333578999974
|
Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family. |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.72 E-value=4.4 Score=39.72 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=56.7
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE--ccccc-c-cCCCCce
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK--GKIEE-I-ELPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~--~d~~~-~-~~~~~~~ 190 (409)
....++.+||-.|+|. |.++..+|+ .|+.+|+++|.++ ..+.+++. |....+.... .++.+ + ....+.+
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 256 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITDGGV 256 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhCCCC
Confidence 4567889999999865 666777777 6777899999998 87777552 4322121111 11111 1 0112368
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCC-eEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~li 226 (409)
|+|+-. .+ . ...+....+.++++ |+++
T Consensus 257 d~vid~-~G----~----~~~~~~~~~~~~~~~G~~v 284 (368)
T TIGR02818 257 DYSFEC-IG----N----VNVMRAALECCHKGWGESI 284 (368)
T ss_pred CEEEEC-CC----C----HHHHHHHHHHhhcCCCeEE
Confidence 988842 11 1 12344445778886 8876
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=80.46 E-value=15 Score=34.95 Aligned_cols=122 Identities=15% Similarity=0.166 Sum_probs=80.1
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEccccc
Q 015306 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIEE 182 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~~~ 182 (409)
.|+..|-+.+.+..... ...|+-||||--.=+..+-.-...+|+=+|.-+.++.=++.+...+. +..++++..|+.+
T Consensus 76 ~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 76 ARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred HHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccc
Confidence 45555555555443322 57899999996443333222112478888887777777777776663 3468999999984
Q ss_pred cc---------CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 183 IE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 183 ~~---------~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.. +....--+++++.+..++ .+.....++..+...+.||-.++..
T Consensus 155 ~dw~~~L~~~G~d~~~pt~~iaEGLl~YL-~~~~v~~ll~~I~~~~~~gS~~~~~ 208 (297)
T COG3315 155 DDWPQALAAAGFDRSRPTLWIAEGLLMYL-PEEAVDRLLSRIAALSAPGSRVAFD 208 (297)
T ss_pred cchHHHHHhcCCCcCCCeEEEeccccccC-CHHHHHHHHHHHHHhCCCCceEEEe
Confidence 33 224556688888765555 3456779999998888888887754
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.28 E-value=12 Score=35.82 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=54.0
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-CC----------CCcEEEEEcccccccCCCCc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-GF----------SNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-~~----------~~~i~~~~~d~~~~~~~~~~ 189 (409)
++|.-||+|. +.++..+++.|. +|+.+|.++ .++.+++.+... +. ..++++ ..|..+. -..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---~~~ 79 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA---VSG 79 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH---hcc
Confidence 4688899986 355566666665 899999998 877776542211 10 011222 1222221 156
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.|+|+... .........++..+..+++++.+++
T Consensus 80 aDlVi~av----~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 80 ADLVIEAV----PEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred CCEEEEec----cCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 89998632 1122235567777777777766554
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.21 E-value=10 Score=34.86 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-H-HHHHHHHHHHcCCCCcEEEEEccccccc---------CC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-M-ANMAKQIVEANGFSNVITVLKGKIEEIE---------LP 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~-~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~~ 186 (409)
..+++||-.|++.| .++..+++.|..+|++++-++ . ++.+.+.+...+- .+++++.+|+.+.. ..
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence 45678999999765 233334445545899998776 4 5555444544432 25889999987643 11
Q ss_pred CCceeEEEEe
Q 015306 187 VTKVDIIISE 196 (409)
Q Consensus 187 ~~~~DvVvs~ 196 (409)
.+..|+++.+
T Consensus 85 ~g~id~li~~ 94 (253)
T PRK07904 85 GGDVDVAIVA 94 (253)
T ss_pred cCCCCEEEEe
Confidence 2579988865
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=80.08 E-value=7.6 Score=36.00 Aligned_cols=92 Identities=24% Similarity=0.227 Sum_probs=55.2
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+||-.|||. |..+..+|+ .|..+|++++.++ ..+.+++. |..+.+..... .. .....+|+|+
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~-~~~~~~d~vl 164 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVAADTA---DE-IGGRGADVVI 164 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccccccch---hh-hcCCCCCEEE
Confidence 4567888999998865 566666777 5665599999888 77666653 21111111100 11 1235699998
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
... .. ...+....+.|+++|.++
T Consensus 165 ~~~-----~~----~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 165 EAS-----GS----PSALETALRLLRDRGRVV 187 (277)
T ss_pred Ecc-----CC----hHHHHHHHHHhcCCcEEE
Confidence 521 11 123445567889999887
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 409 | ||||
| 1or8_A | 340 | Structure Of The Predominant Protein Arginine Methy | 1e-116 | ||
| 1ori_A | 343 | Structure Of The Predominant Protein Arginine Methy | 1e-116 | ||
| 1orh_A | 353 | Structure Of The Predominant Protein Arginine Methy | 1e-116 | ||
| 3q7e_A | 349 | Crystal Structure Of Rat Protein Arginine Methyltra | 1e-116 | ||
| 1g6q_1 | 328 | Crystal Structure Of Yeast Arginine Methyltransfera | 1e-94 | ||
| 2fyt_A | 340 | Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev | 3e-83 | ||
| 1f3l_A | 321 | Crystal Structure Of The Conserved Core Of Protein | 5e-83 | ||
| 4hc4_A | 376 | Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 ( | 5e-60 | ||
| 3b3j_A | 480 | The 2.55 A Crystal Structure Of The Apo Catalytic D | 1e-46 | ||
| 2y1w_A | 348 | Crystal Structure Of Coactivator Associated Arginin | 1e-46 | ||
| 4ikp_A | 341 | Crystal Structure Of Coactivator-associated Arginin | 2e-46 | ||
| 3b3f_A | 341 | The 2.2 A Crystal Structure Of The Catalytic Domain | 2e-46 | ||
| 2v74_B | 346 | Crystal Structure Of Coactivator-Associated Arginin | 1e-45 | ||
| 3r0q_C | 376 | A Uniquely Open Conformation Revealed In The Crysta | 4e-45 | ||
| 4g56_A | 657 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 2e-05 | ||
| 4gqb_A | 637 | Crystal Structure Of The Human Prmt5:mep50 Complex | 1e-04 |
| >pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340 | Back alignment and structure |
|
| >pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343 | Back alignment and structure |
|
| >pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353 | Back alignment and structure |
|
| >pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349 | Back alignment and structure |
|
| >pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328 | Back alignment and structure |
|
| >pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340 | Back alignment and structure |
|
| >pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321 | Back alignment and structure |
|
| >pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376 | Back alignment and structure |
|
| >pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480 | Back alignment and structure |
|
| >pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348 | Back alignment and structure |
|
| >pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341 | Back alignment and structure |
|
| >pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341 | Back alignment and structure |
|
| >pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346 | Back alignment and structure |
|
| >pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376 | Back alignment and structure |
|
| >pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 657 | Back alignment and structure |
|
| >pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 637 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 409 | |||
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 1e-146 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 1e-138 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 1e-135 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 1e-128 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 1e-125 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 1e-114 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 1e-55 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 6e-37 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 5e-24 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 3e-17 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 5e-15 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 2e-13 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 2e-12 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 6e-12 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 1e-11 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 4e-11 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 4e-10 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 1e-09 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 1e-08 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 1e-08 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 1e-08 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 2e-08 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 8e-08 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 9e-08 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 1e-07 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 1e-07 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 1e-07 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 2e-07 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 3e-07 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 4e-07 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 4e-07 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 5e-07 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 5e-07 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 7e-07 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 7e-07 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 7e-07 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 1e-06 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 1e-06 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 1e-06 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 1e-06 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 1e-06 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 2e-06 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 2e-06 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 2e-06 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 3e-06 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 3e-06 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 3e-06 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 4e-06 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 4e-06 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 5e-06 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 6e-06 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 6e-06 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 6e-06 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 6e-06 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 6e-06 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 7e-06 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 8e-06 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 8e-06 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 9e-06 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 9e-06 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 1e-05 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 1e-05 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 1e-05 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 1e-05 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 1e-05 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 2e-05 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 2e-05 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 2e-05 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 2e-05 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 2e-05 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 2e-05 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 2e-05 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 3e-05 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 3e-05 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 4e-05 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 5e-05 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 6e-05 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 6e-05 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 7e-05 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 7e-05 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 1e-04 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 1e-04 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 2e-04 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 2e-04 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 2e-04 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 2e-04 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 3e-04 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 3e-04 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 3e-04 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 3e-04 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 4e-04 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 4e-04 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 4e-04 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 5e-04 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 5e-04 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 6e-04 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 9e-04 |
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 419 bits (1077), Expect = e-146
Identities = 197/341 (57%), Positives = 254/341 (74%), Gaps = 4/341 (1%)
Query: 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLD 128
A+ S +D TS DYYFDSY+HFGIHEE+LKD VRT +Y+N ++ N+ LFKDKVVLD
Sbjct: 13 QAESSEKPNAEDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLD 72
Query: 129 VGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188
VG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK+EE+ELPV
Sbjct: 73 VGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVE 132
Query: 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIE 248
KVDIIISEWMGY L +E+MLNTVL+ARDKWL DG++ PD+A+LY+TAIED +YKD KI
Sbjct: 133 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIH 192
Query: 249 FWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLV 308
+W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI + D +FT+PF L
Sbjct: 193 WWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQ 252
Query: 309 AQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEA 368
+RNDY+HALVAYF++ FT+CHK GFS T P+S THWKQTV Y+ED LT+ GE
Sbjct: 253 VKRNDYVHALVAYFNIEFTRCHKRTGFS----TSPESPYTHWKQTVFYMEDYLTVKTGEE 308
Query: 369 ISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409
I G++ + PN KN RD+D + +G+ +S Y+MR
Sbjct: 309 IFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 349
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 | Back alignment and structure |
|---|
Score = 395 bits (1017), Expect = e-138
Identities = 166/331 (50%), Positives = 225/331 (67%), Gaps = 11/331 (3%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
DYYFDSY H+GIHEEML+D VRT SY+N I QNK LFKDK+VLDVG GTGILS+F AK G
Sbjct: 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
A HV V+ S + MAK++VE NGFS+ IT+L+GK+E++ LP KVDIIISEWMGYFLL+
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLY 120
Query: 205 ENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQ 264
E+M++TVLYARD +LV+ G++ PDK S++L +ED++YKD+K+ +W +VYGFD S
Sbjct: 121 ESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPL 180
Query: 265 AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDV 324
+ EP+VDTV++N + T L D++ + D +F + FKL A+R D I+ +V +FD+
Sbjct: 181 VLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDI 240
Query: 325 TF--TKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNP 382
F K + + FS TGP + THWKQT+ Y D L G+ I G L +PN+KN
Sbjct: 241 VFPAPKGKRPVEFS----TGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNN 296
Query: 383 RDVDIMLKYSLQ-----GRHSAISRIQYYKM 408
RD++I + Y + G + Y M
Sbjct: 297 RDLNIKISYKFESNGIDGNSRSRKNEGSYLM 327
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 390 bits (1004), Expect = e-135
Identities = 146/314 (46%), Positives = 200/314 (63%), Gaps = 3/314 (0%)
Query: 83 SADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK 142
YF SY H+GIHEEMLKD +RT+SY++ IYQN +FKDKVVLDVG GTGILS+F AK
Sbjct: 25 EDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAK 84
Query: 143 AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202
AGA V V+ S++ A I+ N + IT++KGKIEE+ LPV KVD+IISEWMGYFL
Sbjct: 85 AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFL 144
Query: 203 LFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIK 262
LFE+ML++VLYA++K+L G V PD ++ L A+ D D+I FW++VYGF MSC+K
Sbjct: 145 LFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMK 204
Query: 263 KQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYF 322
K + E +V+ +D +++ +K +D D F++ F L R A+ YF
Sbjct: 205 KAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYF 264
Query: 323 DVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNP 382
D+ F K ++TGP+S THWKQTV LE ++ GEA+ G +TV NKK+P
Sbjct: 265 DIYFEKNCHNRVV---FSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDP 321
Query: 383 RDVDIMLKYSLQGR 396
R + + L + +
Sbjct: 322 RSLTVTLTLNNSTQ 335
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 372 bits (956), Expect = e-128
Identities = 117/349 (33%), Positives = 179/349 (51%), Gaps = 20/349 (5%)
Query: 73 SMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAG 132
S+ +++SA YF Y + + M++D VRT +YQ I QN FKDK+VLDVG G
Sbjct: 1 SVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCG 60
Query: 133 TGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192
+GILS F A+AGA +YAVE S MA A+ +V++N ++ I V+ GK+EE+ LP +VDI
Sbjct: 61 SGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDI 119
Query: 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD---KIEF 249
IISE MGY L E ML + L+A+ K+L G + P ++L D + + K F
Sbjct: 120 IISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANF 178
Query: 250 W--NNVYGFDMSCIKKQAMME----PLVDTVDQNQIVTNCQLLKTMDISKMGPGD-ASFT 302
W + +G D+S ++ A+ E P+VDT D ++ T++ + GD
Sbjct: 179 WYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSV-KYTVNFLEAKEGDLHRIE 237
Query: 303 APFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLT 362
PFK + +H L +FDV F + S T P THW Q + L
Sbjct: 238 IPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLS----TAPTEPLTHWYQVRCLFQSPLF 293
Query: 363 ICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAIS---RIQYYKM 408
G+ +SG+ + NK+ D+ I+ + G S+ + +++
Sbjct: 294 AKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 342
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 370 bits (951), Expect = e-125
Identities = 117/353 (33%), Positives = 180/353 (50%), Gaps = 20/353 (5%)
Query: 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLD 128
+ S+ +++SA YF Y + + M++D VRT +YQ I QN FKDK+VLD
Sbjct: 105 TLERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLD 164
Query: 129 VGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188
VG G+GILS F A+AGA +YAVE S MA A+ +V++N ++ I V+ GK+EE+ LP
Sbjct: 165 VGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-E 223
Query: 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD--- 245
+VDIIISE MGY L E ML + L+A+ K+L G + P ++L D + +
Sbjct: 224 QVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFT 282
Query: 246 KIEFW--NNVYGFDMSCIKKQAMME----PLVDTVDQNQIVTNCQLLKTMDISKMGPGD- 298
K FW + +G D+S ++ A+ E P+VDT D ++ T++ + GD
Sbjct: 283 KANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSV-KYTVNFLEAKEGDL 341
Query: 299 ASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLE 358
PFK + +H L +FDV F + S T P THW Q +
Sbjct: 342 HRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLS----TAPTEPLTHWYQVRCLFQ 397
Query: 359 DVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAIS---RIQYYKM 408
L G+ +SG+ + NK+ D+ I+ + G S+ + +++
Sbjct: 398 SPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 450
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 338 bits (867), Expect = e-114
Identities = 107/361 (29%), Positives = 178/361 (49%), Gaps = 34/361 (9%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILS 137
D + YF +YS ++ML D VR +Y N ++QNK F+ K VLDVG G+GIL+
Sbjct: 19 VDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILA 78
Query: 138 LFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197
++ A+AGA VYAVE ++MA+ A+ +V+AN +++ V++G +E+I LP KVD+IISEW
Sbjct: 79 IWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW 137
Query: 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK------DDKIEFWN 251
MGYFLL E+M ++V+ ARD+WL G++ P A ++L I+ D + W+
Sbjct: 138 MGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWH 197
Query: 252 NV-------YGFDMSCIKKQAMME--------PLVDTVDQNQIVTNCQLLKTMDISKMGP 296
N YG DM + K E + + ++ QI+ ++K MD
Sbjct: 198 NFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASV 257
Query: 297 GDASFTAPFKL--VAQRNDYIHALVAYFDVTFT-----KCHKLMGFSTVYNTGPKS-RAT 348
+ + + + +FDV F+ + + + T P T
Sbjct: 258 SEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELT----TAPSEQHCT 313
Query: 349 HWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKM 408
HW Q V + + + + EG+ ++ L ++ +K+N R ++I L ++
Sbjct: 314 HWGQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTY 373
Query: 409 R 409
Sbjct: 374 F 374
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 1e-55
Identities = 51/324 (15%), Positives = 97/324 (29%), Gaps = 51/324 (15%)
Query: 96 IHEEMLKDVVRTKSYQNVIYQ-----NKFLFKDKVVLDVGAGTGILSLFCAKAGA----- 145
++ +D ++ Y + K V+ +G G G + K+
Sbjct: 378 VYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNT 437
Query: 146 ---------AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT-----KVD 191
+Y VE + A + + + + +T+++ + + + D
Sbjct: 438 FRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPD 497
Query: 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED----AEYKDDKI 247
II+SE +G F E + L +L I +P K + Y+ I K I
Sbjct: 498 IIVSELLGSFGDNE-LSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIKAQSI 556
Query: 248 EFWNNVYGFDMSCIKKQAMMEPL------------------VDTVDQNQIVTNCQLLKTM 289
+ + + E V + + + T
Sbjct: 557 PYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVFTF 616
Query: 290 DISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATH 349
+ + + V RN + YFD+ K S +T
Sbjct: 617 EHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYKTV---MLSIEPSTHTPGM-VS 672
Query: 350 WKQTVLYLEDVLTICEGEAISGSL 373
W V+ L D L + EG+ IS +
Sbjct: 673 WFPAVIPLRDQLRVGEGDRISLKI 696
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 6e-37
Identities = 35/192 (18%), Positives = 75/192 (39%), Gaps = 11/192 (5%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILS 137
++KT D+ + F + E + + + L + ++ D+G GTG +
Sbjct: 3 NENKTIHDFELNLICDFFSNMERQGPGSPEVTLK-ALSFIDNLTEKSLIADIGCGTGGQT 61
Query: 138 LFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196
+ A V ++ ++ + +G N +T + G ++++ ++D+I SE
Sbjct: 62 MVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSE 121
Query: 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGF 256
Y + FE LN K+L G + + S + E + +FW + Y
Sbjct: 122 GAIYNIGFERGLN----EWRKYLKKGGYLAVSECSWF-----TDERPAEINDFWMDAYPE 172
Query: 257 DMSCIKKQAMME 268
+ + A +
Sbjct: 173 IDTIPNQVAKIH 184
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 5e-24
Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 17/192 (8%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
++F+ YS +E LK + ++ F K VLD+G G G ++ A+ G
Sbjct: 11 KHFFEQYSQMPRSKEGLKAAGEWHELKKMLP----DFNQKTVLDLGCGFGWHCIYAAEHG 66
Query: 145 AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203
A V ++ S +M AK+ S V+ + IE+I + ++++S L
Sbjct: 67 AKKVLGIDLSERMLTEAKR----KTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA---LH 119
Query: 204 FENMLNTVLYARDKWLVDDG-IVLPDKASLYLTAIEDAEYKDD---KIEFWNNVYGFDMS 259
+ + + L G + + ++ Y D+ K+ + + Y F+ S
Sbjct: 120 YIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRY-FNES 178
Query: 260 CIKKQAMMEPLV 271
+ E +
Sbjct: 179 MRTSHFLGEDVQ 190
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 3e-17
Identities = 30/193 (15%), Positives = 69/193 (35%), Gaps = 13/193 (6%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKDVV-RTKSYQNVIYQNKFLFKDKVVLDVGAGTGIL 136
++ + D+ F + + + ++ + + L D + D+G GTG
Sbjct: 3 NNNTSIHDFDFSF--ICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQ 60
Query: 137 SLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195
+LF A + ++ + + ++ + + G ++ + ++D+I S
Sbjct: 61 TLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWS 120
Query: 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYG 255
E Y + FE +N K+L G + + + +E + +FW + Y
Sbjct: 121 EGAIYNIGFERGMNEWS----KYLKKGGFIA-----VSEASWFTSERPAEIEDFWMDAYP 171
Query: 256 FDMSCIKKQAMME 268
ME
Sbjct: 172 EISVIPTCIDKME 184
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 5e-15
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITV 175
F+ + ++LDVG+ L + + G A E + A + VEA+G I V
Sbjct: 11 SFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQV 70
Query: 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+V +I MG L + + K + ++L
Sbjct: 71 RLANGLAAFEETDQVSVITIAGMGGRL----IARILEEGLGKLANVERLIL 117
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 2e-13
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITV 175
++ K++ + D+G+ L F K A+ A E A++ V ++G + I V
Sbjct: 17 SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDV 76
Query: 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
KG + +D I+ MG L + + K ++L
Sbjct: 77 RKGNGLAVIEKKDAIDTIVIAGMGGTL----IRTILEEGAAKLAGVTKLIL 123
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 2e-12
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 6/111 (5%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITV 175
++ K +LDVG+ L +F + G A E A + V +G ++ I V
Sbjct: 17 NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDV 76
Query: 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+D I MG L + + + DK +VL
Sbjct: 77 RLANGLSAFEEADNIDTITICGMGGRL----IADILNNDIDKLQHVKTLVL 123
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 6e-12
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 14/126 (11%)
Query: 80 DKTSADYY--FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILS 137
DK A I+ + ++++ +F +D+G+G G LS
Sbjct: 10 DKKGAKNMDEISKTLFAPIYPIIAENIIN-----------RFGITAGTCIDIGSGPGALS 58
Query: 138 LFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196
+ AK + A++ S M +A + + ++ I +++G + I + D+I+S
Sbjct: 59 IALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSR 118
Query: 197 WMGYFL 202
+F
Sbjct: 119 GSVFFW 124
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 1e-11
Identities = 20/183 (10%), Positives = 56/183 (30%), Gaps = 11/183 (6%)
Query: 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLD 128
V+ G + F + +L R ++ + + L VV
Sbjct: 72 HRLVTHQPGSGALAPLERVF-----YERLPAVLATRERHGHFRRAL--QRHLRPGCVVAS 124
Query: 129 VGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185
V G L + + ++ + A ++ + + IT+ + +++
Sbjct: 125 VPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT 184
Query: 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD 245
D++ S + + + + + + L G ++ + D+ +
Sbjct: 185 REG-YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQ 243
Query: 246 KIE 248
I+
Sbjct: 244 AID 246
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 4e-11
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI- 183
++D+ +G GI+ L + A + VE ++A+MAK+ V N + I +++ +++I
Sbjct: 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112
Query: 184 -ELPVTKVDIIIS 195
+P + DI+
Sbjct: 113 DLIPKERADIVTC 125
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 4e-10
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
+ + K V DVG G+GIL++ K GA V A + S + A++ NG ++
Sbjct: 56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQK 115
Query: 177 KGKIEEIELPVTKVDIII 194
+ +++ K D+I+
Sbjct: 116 TSLLADVD---GKFDLIV 130
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 1e-09
Identities = 22/186 (11%), Positives = 62/186 (33%), Gaps = 12/186 (6%)
Query: 80 DKTSADYYFDSY-SHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSL 138
K + + +Y ++G +D R + + F+ + VLD+G G L+L
Sbjct: 10 KKQQRKFQYGNYCKYYGYRNPSCEDG-RLRVLK------PEWFRGRDVLDLGCNVGHLTL 62
Query: 139 FCA-KAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196
A K G + + ++ ++ + A+Q + + + + + + +
Sbjct: 63 SIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK 122
Query: 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLT--AIEDAEYKDDKIEFWNNVY 254
+ + + D V P+ ++ + + + ++ V
Sbjct: 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVL 182
Query: 255 GFDMSC 260
++
Sbjct: 183 CLSLTK 188
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-09
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180
++D+G G G + + GA++V ++ S+ M A+ G IT + +
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG----ITYERADL 98
Query: 181 EEIELPVTKVDIIIS 195
+++ LP D+ S
Sbjct: 99 DKLHLPQDSFDLAYS 113
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 7e-09
Identities = 50/351 (14%), Positives = 108/351 (30%), Gaps = 80/351 (22%)
Query: 98 EEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDV--GAGTGILSLFCAKAGA------AHVY 149
++M K ++ + ++I + + ++ F +
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 150 AVECSQMANMAKQIVEA-NGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENML 208
E Q + M + +E + N V + V+++ + L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFA------KYNVSRLQPYLK------------L 140
Query: 209 NTVLYA--RDKWLVDDGIVLPDKASLYLTAIEDAEYK---DDKIEFWNNVYGFDMSCIKK 263
L K ++ DG++ K + L + + D KI FW N+ +C
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNL-K---NCNSP 195
Query: 264 QAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVA---------QRNDY 314
+ ++E L Q LL +D + D S ++ + + Y
Sbjct: 196 ETVLEML-----QK-------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 315 IHAL-----------VAYFDVTFTKCHKLM--GFSTVYNTGPKSRATHWKQTVLYLEDVL 361
+ L F++ C L+ F V + + TH ++ + L
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNL---SCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMTL 298
Query: 362 TICEGEAISGSLTVAPNKKNPRDV-DIM-LKYSLQGR--HSAISRIQYYKM 408
T E +++ + PR+V + S+ ++ +K
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 5e-06
Identities = 73/505 (14%), Positives = 126/505 (24%), Gaps = 202/505 (40%)
Query: 21 DSNPDRQQH---NTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDG 77
D Q+ + ++ F DA D+ + D + + ++ I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-----------MPKSILSKEEIDHIIM 56
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILS 137
D S L + +K Q + Q KF ++ + ++
Sbjct: 57 SKDAVSGTLR-------------LFWTLLSK--QEEMVQ-KF-VEEVLRINYK------- 92
Query: 138 LFCAKAGAAHVYAVECSQMANMAKQIVEA-NGFSNVITVLKGKIEEIELPVTKVDIIISE 196
F E Q + M + +E + N V + V+++ +
Sbjct: 93 -FLMSP-----IKTEQRQPSMMTRMYIEQRDRLYNDNQVFA------KYNVSRLQPYLK- 139
Query: 197 WMGYFLLFENMLNTVLYA--RDKWLVDDGIVLPDKASLYLTAIEDAEYK---DDKIEFWN 251
L L K ++ DG++ K + L + + D KI FW
Sbjct: 140 -----------LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWL 187
Query: 252 NVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVA-- 309
N+ +C + ++E L Q LL +D + D S ++ +
Sbjct: 188 NL-K---NCNSPETVLEML-----QK-------LLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 310 -------QRNDYIHAL-----------VAYFDVTFTKC---------------------- 329
+ Y + L F++ C
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL---SCKILLTTRFKQVTDFLSAATTTH 288
Query: 330 ----HKLMGFST---------------------VYNTGP----------KSRATHWKQTV 354
H M + V T P + W
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 355 LYLEDVLTICEGEAISGSLTV-APN--KKN-------PRDVDI----------------- 387
D LT I SL V P +K P I
Sbjct: 349 HVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 388 ------MLKYSLQGRHSAISRIQYY 406
+ KYSL + S I
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIP 429
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 178
L KD VV+DVG G+G +++ AK VYA++ A + KQ + N ++KG
Sbjct: 33 LNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNC-QIIKG 90
Query: 179 KIEEIELPVTKVDIII 194
+ E++ L + +
Sbjct: 91 RAEDV-LDKLEFNKAF 105
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKG 178
+ VLDVG G G + +K VYA++ +M N A + V G NV +
Sbjct: 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLK-S 95
Query: 179 KIEEIELPVTKVDIIIS 195
+ +I LP VD I
Sbjct: 96 EENKIPLPDNTVDFIFM 112
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 1e-08
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 88 FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-A 146
Y H E L+ + ++ + +++ + VL+ G G G ++ AK A
Sbjct: 3 LTEYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDA 62
Query: 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202
+ +++ S A++ E NG NV L+ I + + D I ++ L
Sbjct: 63 EITSIDISPESLEKARENTEKNGIKNV-KFLQANIFSLPFEDSSFDHIFVCFVLEHL 118
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-08
Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 23/180 (12%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
D + DV+ ++ F+ +L++G+ G + +
Sbjct: 9 DQEIKDTAGHKYAYNFDFDVMH----PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF 64
Query: 145 AAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203
+ VE + + A+ ++ IT + + E+ +LP + D I+ +
Sbjct: 65 -NDITCVEASEEAISHAQGRLKDG-----ITYIHSRFEDAQLP-RRYDNIVL-----THV 112
Query: 204 FE---NMLNTVLYARDKWLVDDGIVL---PDKASLYLTAIEDAEYKDDKIEFWNNVYGFD 257
E + + + D WL + G + P+ ++ +
Sbjct: 113 LEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHG 172
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-08
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180
K V++D G G G + + +Y ++ + K+ ++ +
Sbjct: 17 KKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEKFDS---------VITLS 66
Query: 181 EEIELPVTKVDIIIS 195
+ E+P VD I+
Sbjct: 67 DPKEIPDNSVDFILF 81
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 9e-08
Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 16/177 (9%)
Query: 89 DSYSHF-GIHEEMLKDVVRTKSYQNVI--YQNKFLFKDKVVLDVGAGTGILSLFCAKAGA 145
+ Y+ F I++++++ V K + + I + LD+ GTG L+
Sbjct: 1 NCYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF- 59
Query: 146 AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW--MGYFL 202
+ +AV+ SQ M + A+ + G + I + + K D+I Y +
Sbjct: 60 KNTWAVDLSQEMLSEAENKFRSQGLK--PRLACQDISNLNIN-RKFDLITCCLDSTNYII 116
Query: 203 LFENMLNTVLYARDKWLVDDGIVL-----PDKASLYLTAIEDAEYKDDKIEFWNNVY 254
+++ L + G+ + K S L + D+ +W N +
Sbjct: 117 DSDDLKKYFKAVS-NHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQF 172
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 1e-07
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKD-------VVRTKSYQNVIYQNKFLFKDKVVLDVG 130
A Y+ Y F ++ +K V K +++ + FK VV+D
Sbjct: 27 AAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAF 86
Query: 131 AGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189
G G ++ A G V A++ + +A+ E G ++ I + G + K
Sbjct: 87 CGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLK 144
Query: 190 VDIII 194
D++
Sbjct: 145 ADVVF 149
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 1e-07
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVL 176
N + V+D G G GIL+ GA V A + A I A + +
Sbjct: 46 NDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDA-----IETAKRNCGGVNFM 100
Query: 177 KGKIEEIELPVTKVDIIIS 195
+ EI K D I
Sbjct: 101 VADVSEISG---KYDTWIM 116
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-07
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 74 MIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGT 133
M E + Y + + E L+ ++ K++ K VLD+ G
Sbjct: 1 MGFKEYYRVFPTYTDINSQEYRSRIETLEPLLM-----------KYMKKRGKVLDLACGV 49
Query: 134 GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192
G S G V V+ S M A++ ++ + + + G ++ D
Sbjct: 50 GGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARKLSFEDKTFDY 106
Query: 193 IIS 195
+I
Sbjct: 107 VIF 109
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI 183
LD GAG G ++ A +E + +M ++ V + +E
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDLLE--PVKHMLEEAKRELAGMPVGKFILASMETA 152
Query: 184 ELPVTKVDIIISEWMGYFL 202
LP D+I+ +W +L
Sbjct: 153 TLPPNTYDLIVIQWTAIYL 171
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 178
K+ V +DVG GTG ++L A VYA++ + A + + ++ +G + +T+++G
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG 89
Query: 179 KIEEIELPVTKVDIII 194
E + +DI +
Sbjct: 90 DAPEALCKIPDIDIAV 105
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 27/156 (17%), Positives = 47/156 (30%), Gaps = 24/156 (15%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178
L + LD+GAG G + F + + + + ++ G ++ ITV G
Sbjct: 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG 139
Query: 179 KIEEIELPVTKVDIIISEWM---------------------GYFLLFENMLNTVLYARDK 217
EI D I S+ G + + M +
Sbjct: 140 SFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI 199
Query: 218 WLVDDGIVLPDKASL--YLTAIEDAEYKDDKIEFWN 251
+ D I L D SL Y + ++ +
Sbjct: 200 QPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP 235
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 4e-07
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 122 KDKVVLDVGAGTGILSLFCA-KAGAAHVYAVECS-QMANMAKQIVEAN---GFSNVITVL 176
+ + D+GAG G + A + A V E S +MA A++ +E FS I VL
Sbjct: 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL 95
Query: 177 KGKIEEIE-------LPVTKVDIIIS 195
+ + LP +I
Sbjct: 96 EADVTLRAKARVEAGLPDEHFHHVIM 121
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 5e-07
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
DK VLD GAG + L Y +E S A+ N F + + KG I
Sbjct: 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK--LNISKGDI 80
Query: 181 EEIELPVTKVDIIISEWMGYFLLFEN 206
++ + + S + + +
Sbjct: 81 RKLPFKDESMSFVYSYGTIFHMRKND 106
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 5e-07
Identities = 33/179 (18%), Positives = 64/179 (35%), Gaps = 15/179 (8%)
Query: 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA 143
A+YY Y + D V I++ + + VLD+ GTGI +L A+
Sbjct: 9 AEYYDTIYRRRIERVKAEIDFVEE------IFKEDAKREVRRVLDLACGTGIPTLELAER 62
Query: 144 GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202
G V ++ + M +A++ + I L+G + EI + D + +
Sbjct: 63 G-YEVVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118
Query: 203 LFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED----AEYKDDKIEFWNNVYGFD 257
E L + + L G+ + D + + E K ++ + +
Sbjct: 119 FDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVE 177
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNV-ITVLKGK 179
KD +LD+G G G++ + A + ++ A +AK+ ++ N N I V+
Sbjct: 52 KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD 110
Query: 180 IEEIELPVTKVDIIIS 195
+ E + K + II+
Sbjct: 111 LYE-NVKDRKYNKIIT 125
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 7e-07
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 13/103 (12%)
Query: 94 FGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC 153
H L +++T + VLD+GAG G +L + V+
Sbjct: 3 HHHHHHSLGLMIKTAE----------CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDA 51
Query: 154 SQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195
++ M +A + G NV G E + P DII
Sbjct: 52 TKEMVEVASSFAQEKGVENVRFQQ-GTAESLPFPDDSFDIITC 93
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 7e-07
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE 181
K V+ D+GAGTG S+ A G VYAVE S M +Q A V G E
Sbjct: 34 KGSVIADIGAGTGGYSVALANQG-LFVYAVEPS--IVMRQQ---AVVHPQV-EWFTGYAE 86
Query: 182 EIELPVTKVDIIIS 195
+ LP VD +IS
Sbjct: 87 NLALPDKSVDGVIS 100
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 78 EDDKTSADYYFDSYSHF--GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGI 135
+ SA+ +DS + F +EM R+ + +++ K+ VLDVG G G
Sbjct: 10 FNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIP---FFEQYVKKEAEVLDVGCGDGY 66
Query: 136 LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194
+ ++ G V+ S M K+ E ++ +KG + + + + I+
Sbjct: 67 GTYKLSRTG-YKAVGVDISEVMIQKGKERGEGPD----LSFIKGDLSSLPFENEQFEAIM 121
Query: 195 SEWMGYFL 202
+ +
Sbjct: 122 AINSLEWT 129
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 27/142 (19%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
VLDVG G G ++ A A V + S+ N A A G +N +T ++
Sbjct: 65 VLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP 124
Query: 185 LPVTKVDIIISEWM---------------------GYFLLFENMLNTVLYARDKWLVD-- 221
D + + G + + +L + K VD
Sbjct: 125 FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAF 184
Query: 222 -DGIVLPDKASL--YLTAIEDA 240
G + + Y + + A
Sbjct: 185 RAGGGVLSLGGIDEYESDVRQA 206
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-06
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183
V L++G GTG ++L G A++ M + +Q + + V++ I
Sbjct: 42 VFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRK--VQVVQADARAI 98
Query: 184 ELPVTKVDIIIS 195
LP V +I
Sbjct: 99 PLPDESVHGVIV 110
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG 178
+ V+D G G + F A V+ + + + + + +T++K
Sbjct: 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD 81
Query: 179 KIEEIELPV-TKVDIIIS 195
+ ++ + V ++
Sbjct: 82 GHQNMDKYIDCPVKAVMF 99
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 30/168 (17%)
Query: 75 IDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTG 134
+ G D TS DYYF F E++K R + Y + + VLD+G G G
Sbjct: 3 LSGTDIHTS-DYYFLFEEKFRGSRELVKA--RLRRY------IPYFKGCRRVLDIGCGRG 53
Query: 135 ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVD 191
C + G V+ ++ M + V+K E LP +D
Sbjct: 54 EFLELCKEEG-IESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLD 103
Query: 192 IIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVL---PDKASLYL 234
++ + +F+ L L +L + ++ P+ SLY
Sbjct: 104 GVM---ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYS 148
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-06
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI 180
+ +V+D G G + F A + VYA + + A Q + G N +L G
Sbjct: 22 DESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHE 80
Query: 181 EEIELPVTKVDIII 194
+ I
Sbjct: 81 NLDHYVREPIRAAI 94
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
VL+ G GTG L+ AG VY +E S +M +AK+ + ++ +G E
Sbjct: 49 VLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLPKE-----FSITEGDFLSFE 102
Query: 185 LPVTKVDIIIS 195
+P T +D I+S
Sbjct: 103 VP-TSIDTIVS 112
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
+ L VLD+G G+G+L++ K G V+ M A+ + NG L
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVRP--RFL 172
Query: 177 KGKIEEIELPVTKVDIII 194
+G +E LP D+++
Sbjct: 173 EGSLEA-ALPFGPFDLLV 189
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
+ KVV D+GAGTG+LS GA V VE + A ++ + + V G
Sbjct: 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGD 105
Query: 180 IEEIELPVTKVDIIIS 195
+ E ++VDI+I
Sbjct: 106 VSEFN---SRVDIVIM 118
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 Length = 177 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-06
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 32/150 (21%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI---VEANGFSNVITVLK 177
F VLD+ AG+G L++ G + VE ++ A I + N T+LK
Sbjct: 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKA--QAIIQDNIIMTKAENRFTLLK 87
Query: 178 GKIEE-IELPVTKVDIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIV---- 225
+ E I+ + D++ FL + + A L + +V
Sbjct: 88 MEAERAIDCLTGRFDLV-------FLDPPYAKETIVATIEAL--AAKNLLSEQVMVVCET 138
Query: 226 -----LPDKASLYLTAIEDAEYKDDKIEFW 250
LP + + L ++ Y K+ +
Sbjct: 139 DKTVLLPKEIA-TLGIWKEKIYGISKVTVY 167
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
LD+G G G SL+ A G V A + + ++I N + + +
Sbjct: 36 TLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLT 93
Query: 185 LPVTKVDIIISEWMGYFL 202
+ D I+S + FL
Sbjct: 94 FD-RQYDFILSTVVLMFL 110
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 4e-06
Identities = 26/160 (16%), Positives = 58/160 (36%), Gaps = 9/160 (5%)
Query: 70 ADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDV 129
ADV + + D+Y + + + ++++D T + + + VL++
Sbjct: 34 ADVLLASVGERGVLCDFYDEGAAD--TYRDLIQDADGTSEARE--FATRTGPVSGPVLEL 89
Query: 130 GAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIELP 186
AG G L+ G V A+E S + ++ + + T+++G + L
Sbjct: 90 AAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD 148
Query: 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ ++ L E + + + L G L
Sbjct: 149 -KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFL 187
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI-EEI 183
V D+G G+G + + AK A V+A + S A +A++ E +G S+ V KG+ E
Sbjct: 127 VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF 186
Query: 184 ELPVTKVDIIIS 195
+ +++I+S
Sbjct: 187 KEKFASIEMILS 198
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFS-------- 170
++K VL+ + TG ++ G + V +V+ SQ A ++A+Q VE N
Sbjct: 218 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 277
Query: 171 -NVITVLKGKIEEIELPVTKVDIII 194
+V +L+ + E K D+I+
Sbjct: 278 DDVFKLLRTYRDRGE----KFDVIV 298
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 6e-06
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEA--NGFSNVITVL 176
+ K+++DVG G G +L A+ + + S M A+ I E + + N ++
Sbjct: 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN-VSFK 94
Query: 177 KGKIEEIE------LPVTKVDIIIS 195
++ + + K+D+I +
Sbjct: 95 ISSSDDFKFLGADSVDKQKIDMITA 119
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 6e-06
Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 12/206 (5%)
Query: 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQ---NKFLFKDKVVLDVGAGTGILSLFC 140
++Y +S G + ++ N I + + VLD+G G G L
Sbjct: 24 REHY-NSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKY 82
Query: 141 AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEW- 197
+AG Y V+ ++ N A+ + + + D+I S++
Sbjct: 83 ERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142
Query: 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFD 257
Y L+ + L G + S + + + N+ Y +
Sbjct: 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVIL-----ERYKQGRMSNDFYKIE 197
Query: 258 MSCIKKQAMMEPLVDTVDQNQIVTNC 283
+ ++ M V NC
Sbjct: 198 LEKMEDVPMESVREYRFTLLDSVNNC 223
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175
++ +LD+GAGTG+LS F + A V+ S+ M +AK N +
Sbjct: 40 SVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLK---VKY 96
Query: 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
++ + + K D+++S + L E+ + L + GI +
Sbjct: 97 IEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSY-SILKESGIFI 145
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 6e-06
Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 15/160 (9%)
Query: 74 MIDGEDDKTSADYYFDSYSHF--GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGA 131
M Y + +H+ KD R + + + + K +LDV
Sbjct: 1 MAHSSATAGPQADYSGEIAELYDLVHQGKGKDYHREAADLAALVR-RHSPKAASLLDVAC 59
Query: 132 GTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190
GTG+ A + V +E S M +A++ + G + + L +
Sbjct: 60 GTGMHLRHLADSF-GTVEGLELSADMLAIARRRNPD------AVLHHGDMRDFSLG-RRF 111
Query: 191 DIIISEW--MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228
+ + +G+ + + ++ DG+V+ +
Sbjct: 112 SAVTCMFSSIGHLAGQAELDAALERFA-AHVLPDGVVVVE 150
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 6e-06
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
L++G G + A + ++ + A Q +S++ + I +
Sbjct: 55 GLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQ--RTKRWSHI-SWAATDILQ-F 109
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL----PDKASLYLTAIEDA 240
D+I+ + Y+L + T + K L G ++ D + A
Sbjct: 110 STAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGA 169
Query: 241 EY 242
E
Sbjct: 170 ET 171
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 7e-06
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 83 SADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK 142
S D + + K T + +V+ K + KV LD+G G G SL+ +
Sbjct: 82 SDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKV-LDLGCGQGRNSLYLSL 140
Query: 143 AGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201
G V + + ++ + + E + I+ I + D I+S + F
Sbjct: 141 LG-YDVTSWDHNENSIAFLNETKEKENLN--ISTALYDINAANIQ-ENYDFIVSTVVFMF 196
Query: 202 L 202
L
Sbjct: 197 L 197
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 8e-06
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LD+G+G+G + A+ ++ S AK+ E G S + +
Sbjct: 40 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY- 98
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARD--KWLVDDGIVL 226
+ K D+ + L GI+L
Sbjct: 99 VANEKCDVAACVGA-----TWIAGGFAGAEELLAQSLKPGGIML 137
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 8e-06
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVIT 174
L + +L +G G LS G +V +V+ S + + +
Sbjct: 35 LLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSS--VVVAAMQACYAHVPQLR 92
Query: 175 VLKGKIEEIELPVTKVDIIIS 195
+ +++ P D+++
Sbjct: 93 WETMDVRKLDFPSASFDVVLE 113
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 9e-06
Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 30/136 (22%)
Query: 76 DGEDDKTSADYYFDSYSH----------FGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKV 125
K + ++D + + ++ ++ + ++L
Sbjct: 9 HHHHMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLE-----------EYLKNPCR 57
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
VLD+G GTG SLF + G V V+ S+ M +A++ V V++ K E++
Sbjct: 58 VLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVARE-------KGVKNVVEAKAEDLP 109
Query: 185 LPVTKVDIIISEWMGY 200
P + +++
Sbjct: 110 FPSGAFEAVLALGDVL 125
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K++ VLDV TG ++ A AGA V ++ S A AK+ + NG + + +
Sbjct: 213 KWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI 272
Query: 177 KG 178
G
Sbjct: 273 VG 274
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
+V L++G G + A+ V A E + A++ +E N + + G
Sbjct: 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG 114
Query: 180 IEEIELPVTKVDIIIS 195
I + + D+I S
Sbjct: 115 IIK-GVVEGTFDVIFS 129
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LDVG+GTG + A G + +E + ++ +A+Q + +T G I ++
Sbjct: 45 ILDVGSGTGRWTGHLASLG-HQIEGLEPATRLVELARQTHPS------VTFHHGTITDLS 97
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ +++ W + L L A + D G +L
Sbjct: 98 DSPKRWAGLLA-WYSLIHMGPGELPDALVALRMAVEDGGGLL 138
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 27/132 (20%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
+ K VLD+G +G L + G V +E + A AK+ + V+ G I
Sbjct: 32 EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKE--------KLDHVVLGDI 82
Query: 181 EEIELPVT--KVDIIIS----EWMGYFLLFENMLNTVLYARDKWLVDDGIVL---PDKAS 231
E +++P + D +I E + + V+ ++ +G++L P+ +
Sbjct: 83 ETMDMPYEEEQFDCVIFGDVLEHL------FD-PWAVIEKVKPYIKQNGVILASIPNVSH 135
Query: 232 L-YLTAIEDAEY 242
+ L + +
Sbjct: 136 ISVLAPLLAGNW 147
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 14/144 (9%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180
K + D+G GTG +L A V V+ S+ M +A++ + +
Sbjct: 33 PGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNRH--VDFWVQDM 88
Query: 181 EEIELPVTKVDIIISEW--MGYFLLFENMLNTVLYARDKWLVDDGIVL-----PDKASLY 233
E+ELP VD I + Y ++ T A + L D G +L P K
Sbjct: 89 RELELPEP-VDAITILCDSLNYLQTEADVKQTFDSAA-RLLTDGGKLLFDVHSPYKMETL 146
Query: 234 LTAIEDAEYKDDKIEFWNNVYGFD 257
A + + W G +
Sbjct: 147 FNGKTYATHAEQSSYIWFADPGEE 170
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180
++ VLDV G G ++ A V A + ++ + +A+ +E NG V V G
Sbjct: 37 GNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ-GDA 94
Query: 181 EEIELPVTKVDIIIS 195
E++ + I+
Sbjct: 95 EQMPFTDERFHIVTC 109
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182
++D G G G L L + ++ + + A+++ + L+G E
Sbjct: 26 IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD--SEFLEGDATE 83
Query: 183 IELPVTKVDIIISEW 197
IEL K DI I
Sbjct: 84 IELN-DKYDIAICHA 97
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 178
L + + +LD+ +G G ++ AK +V + ++ A MA++ VE N V
Sbjct: 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVDAEFEV--A 344
Query: 179 KIEEIELPVTKVDIII 194
E+ + D +I
Sbjct: 345 SDREVSVK--GFDTVI 358
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 24/186 (12%)
Query: 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLF 139
+ AD Y Y G + + +LDV GTG
Sbjct: 5 EVDHADVYDLFYLGRGKDYAAEASDIAD-------LVRSRTPEASSLLDVACGTGTHLEH 57
Query: 140 CAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW- 197
K +E S+ M A++ + T+ +G + + L K ++S +
Sbjct: 58 FTKEF-GDTAGLELSEDMLTHARKRLPD------ATLHQGDMRDFRLG-RKFSAVVSMFS 109
Query: 198 -MGYFLLFENMLNTVLYARDKWLVDDGIVL-----PDKASLYLTAIEDAEYKDDKIEFWN 251
+GY E + V + L G+V+ + D +D +
Sbjct: 110 SVGYLKTTEELGAAVASFA-EHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARV 168
Query: 252 NVYGFD 257
+ +
Sbjct: 169 SHSVRE 174
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 126 VLDVGAGTGILSLFCAK-AGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEI 183
VLDVG G G+LS+ A+ + + + S A ++ + ANG + E+
Sbjct: 200 VLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNV-FSEV 258
Query: 184 ELPVTKVDIIIS 195
+ + D+IIS
Sbjct: 259 K---GRFDMIIS 267
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEIE 184
+L + G G + F A G V AV+ S + AKQ+ + G IT ++ + + +
Sbjct: 33 ILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGVK--ITTVQSNLADFD 89
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYAR-DKWLVDDGIVL 226
+ + I+S F + L LY + + L G+ +
Sbjct: 90 IVADAWEGIVS----IFCHLPSSLRQQLYPKVYQGLKPGGVFI 128
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-05
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYA 150
+ L K V ++GAG G++S+ AGA V A
Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVA 107
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 14/87 (16%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFS------ 170
K VL++ + T S+ A GA +V+ ++ + ++ EAN
Sbjct: 208 NGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQL 267
Query: 171 ---NVITVLKGKIEEIELPVTKVDIII 194
+V K DIII
Sbjct: 268 VVMDVFDYFKYARRHHL----TYDIII 290
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLK 177
+ + D+G G+G +++ ++ E S + G S+ I V +
Sbjct: 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQ 82
Query: 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYA 214
G + D+I +G L +
Sbjct: 83 GAPRAFDDVPDNPDVIF---IGGGLTAPGVFAAAWKR 116
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Length = 187 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-05
Identities = 20/152 (13%), Positives = 47/152 (30%), Gaps = 33/152 (21%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI---VEANGFSNVITVLK 177
F + LD+ +G+G L++ G +E + A K I + V K
Sbjct: 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAA--LKVIKENIAITKEPEKFEVRK 100
Query: 178 GK----IEEIELPVTKVDIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIVL 226
+E+ + D++ L + L + + L ++ +++
Sbjct: 101 MDANRALEQFYEEKLQFDLV-------LLDPPYAKQEIVSQLEKM--LERQLLTNEAVIV 151
Query: 227 --------PDKASLYLTAIEDAEYKDDKIEFW 250
+ L + Y ++ +
Sbjct: 152 CETDKTVKLPETIGTLKKTRETVYGITQVTIY 183
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
L ++ VLD+G+G G ++ + AH + ++ N+ E +N I
Sbjct: 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICS--NIVNMANERVSGNNKIIFEAND 110
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARD--KWLVDDGIVL 226
I E P D+I S +L ++ N + KWL G +L
Sbjct: 111 ILTKEFPENNFDLIYSRDA---ILALSLENKNKLFQKCYKWLKPTGTLL 156
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 24/119 (20%)
Query: 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL-----FKDKVVLDVGAGTGILSL 138
A + D+ H I + + L + + VLD+G G G L
Sbjct: 21 AQAWIDAVRHGAIE------------SRRQVTDQAILLAILGRQPERVLDLGCGEGWLLR 68
Query: 139 FCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKVDIIIS 195
A G V+ + + + A+ A G V ++ E ++PV D+I +
Sbjct: 69 ALADRG-IEAVGVDGDRTLVDAAR----AAGAGEVHLASYAQLAEAKVPVGKDYDLICA 122
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 6e-05
Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 120 LFKDKVVLDVGAGT-GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK 177
+ + + +G G + + + V VE +A ++++++E G V V+
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGV-NVIT 178
Query: 178 GKIEEIELPVTKVDIII 194
G + + D+++
Sbjct: 179 GDET--VIDGLEFDVLM 193
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 6e-05
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 18/96 (18%)
Query: 71 DVSMIDGEDDKTSADYY---FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVL 127
+ M DD T +Y +Y+ L + L +L
Sbjct: 2 EPDMTQAFDDDT-LRFYRGNATAYAERQPRSATLTKFLG------------ELPAGAKIL 48
Query: 128 DVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQ 162
++G G G + AG V A + S +A A +
Sbjct: 49 ELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASR 83
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 7e-05
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 126 VLDVGAGTG----ILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 176
VL++G G G + + + G V ++E ++A A++ + G+ NVI ++
Sbjct: 81 VLEIGTGCGYHAAVTAEIVGEDG--LVVSIERIPELAEKAERTLRKLGYDNVIVIV 134
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-05
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LD G G G + + +K G V + + + AKQ + G + +
Sbjct: 50 ILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFPE------ARWVVGDLSVDQ 102
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ T D+I+S L E+ L + L DG +
Sbjct: 103 ISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 126 VLDVGAGTGILSLFCAKA-GAAHVYAVECSQMA-NMAKQIVEANGFSNV--ITVLKGKIE 181
++D+G G G++ L A V V+ S MA ++ VE N + +
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 285
Query: 182 EIELPVTKVDIIIS 195
+ + + ++
Sbjct: 286 S-GVEPFRFNAVLC 298
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 11/178 (6%)
Query: 54 AAPVDGTAIEDEAMCDADVSMIDGED--DKTSADY--YFDSYSHFGIHEEMLKDVVRTKS 109
++ + E + D + + Y H I + +
Sbjct: 11 SSGLVPRGSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGH--ISSIDINSSRKF-- 66
Query: 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANG 168
Q + + LD GAG G ++ V V+ AK + G
Sbjct: 67 LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG 126
Query: 169 FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+++ D+I +W+ L +++ + + L +GI++
Sbjct: 127 KRVR-NYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK-GSLRPNGIIV 182
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 126 VLDVGAGTG----ILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 176
VL++G GTG ++S + G V +VE ++ +AK+ VE G NVI V
Sbjct: 79 VLEIGGGTGYNAAVMSRVVGEKG--LVVSVEYSRKICEIAKRNVERLGIENVIFVC 132
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K + + VV+D+ AG G S+ A A +YA++ + A + K+ ++ N + I +
Sbjct: 191 KKVSLNDVVVDMFAGVGPFSI--ACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPI 248
Query: 177 KG 178
Sbjct: 249 LS 250
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 122 KDKVVLDVGAGTG----ILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 176
VL++G G+G IL+ HV +VE + A++ ++ NV T
Sbjct: 77 PQSRVLEIGTGSGYQTAILAHL-----VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRH 131
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 2e-04
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF 169
VL+ G G G + A A + S ++ +A+
Sbjct: 52 VLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAPHADV 95
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 124 KVVLDVGAGTGILS-LFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN----VITVLK 177
+ V+D+G G G L + + + V+ S + +A++ ++ + +++
Sbjct: 31 RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ 90
Query: 178 GKIEEIELPVTKVDIIISEWM 198
G + + D +
Sbjct: 91 GALTYQDKRFHGYDAATVIEV 111
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-04
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI 180
+ + VLD+GAG G L+L A+ G A V VE + ++ +EAN L +
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANALKA--QALHSDV 289
Query: 181 EEIELPVTKVDIIIS 195
+E + DII++
Sbjct: 290 DEALTEEARFDIIVT 304
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
+ VLD+ G G +L A AA V VE + +Q NG NV T +
Sbjct: 286 PEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNV-TFYHENL 343
Query: 181 EEI 183
EE
Sbjct: 344 EED 346
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 28/124 (22%)
Query: 78 EDDKTSADYYFDSYS-----HFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAG 132
+ F+ + F +H ++ K L + +++G G
Sbjct: 7 HHHHHHMWHIFERFVNEYERWFLVHRFAYLSELQAV---------KCLLPEGRGVEIGVG 57
Query: 133 TGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191
TG ++ VE S +MA +A++ + VLKG E + L D
Sbjct: 58 TGRFAVPLKI-----KIGVEPSERMAEIARK--------RGVFVLKGTAENLPLKDESFD 104
Query: 192 IIIS 195
+
Sbjct: 105 FALM 108
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 4e-04
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMANMAKQIVE-ANGFSNVITVL--K 177
+D +L +GA G A VYA+E + + +++++ N+I +L
Sbjct: 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYA--PRIMRELLDACAERENIIPILGDA 131
Query: 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
K +E V KVD+I + N ++ +L G +
Sbjct: 132 NKPQEYANIVEKVDVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGM 175
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Length = 201 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 4e-04
Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 40/158 (25%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
LD AG+G L A V +E V LK +
Sbjct: 52 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELD---------------KTVANQLKKNL 96
Query: 181 EEIELPVTKVDII---ISEWMGYF-------LLF------ENMLNTVLY--ARDKWLVDD 222
+ ++ + ++I +++ ++F N+ + + WL +
Sbjct: 97 QTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPN 156
Query: 223 GIV-------LPDKASLYLTAIEDAEYKDDKIEFWNNV 253
++ P T +++ + N+
Sbjct: 157 ALIYVETEKDKPLITPENWTLLKEKTTGIVSYRLYQNL 194
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 4e-04
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA-NGFSNV 172
Y+++F+ + V+D+ G GI + + +E + + A A+ +
Sbjct: 86 YKSRFIREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKD 144
Query: 173 ITVLKGKIEEI--ELPVTKVDIIISEWM 198
+ +L G +E + D I +
Sbjct: 145 VNILTGDFKEYLPLIKTFHPDYIYVDPA 172
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITV 175
F+ + LDV + G +L G V AV+ S A A++ NG NV +
Sbjct: 208 FRGERALDVFSYAGGFAL-HLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVL 262
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG 178
+ +++ D+G G+G +S+ AG +E ++ ++ G S + ++G
Sbjct: 53 PRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG 111
Query: 179 KIEEI--ELP 186
+LP
Sbjct: 112 TAPAALADLP 121
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 6e-04
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
+ +D+G G + + A E M N AK+ VE N S++I V+K
Sbjct: 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP 124
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFEN 206
+ + + + + Y N
Sbjct: 125 QKTLLMD----ALKEESEIIYDFCMCN 147
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 9e-04
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 126 VLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEAN--------GFSNVIT 174
VLD+G GTG +K V V+ +A++ VE + SNV
Sbjct: 87 VLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNV-R 145
Query: 175 VLKGKIEEI------ELPVTKVDIIISEWMGYFL 202
LKG IE + +P + VDI+IS +
Sbjct: 146 FLKGFIENLATAEPEGVPDSSVDIVISNCVCNLS 179
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 409 | |||
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 100.0 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 100.0 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 100.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 100.0 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 100.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 100.0 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 100.0 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 100.0 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.67 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.67 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.67 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.66 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.66 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.66 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.66 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.64 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.64 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.63 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.63 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.63 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.63 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.63 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.63 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.63 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.62 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.62 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.62 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.62 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.61 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.61 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.61 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.6 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.6 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.59 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.59 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.59 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.59 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.59 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.59 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.59 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.59 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.59 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.58 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.58 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.58 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.58 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.58 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.58 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.58 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.57 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.57 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.57 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.57 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.57 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.57 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.57 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.57 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.56 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.56 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.56 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.56 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.56 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.56 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.56 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.56 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.55 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.55 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.55 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.55 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.55 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.55 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.55 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.55 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.54 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.54 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.54 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.53 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.53 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.53 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.52 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.52 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.52 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.52 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.51 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.51 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.51 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.51 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.51 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.51 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.51 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.51 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.5 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.5 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.5 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.5 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.5 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.5 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.5 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.5 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.5 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.49 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.49 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.49 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.49 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.49 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.49 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.49 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.49 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.49 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.48 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.48 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.48 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.48 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.48 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.48 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.48 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.48 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.48 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.47 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.47 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.47 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.47 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.47 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.46 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.46 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.46 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.46 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.46 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.46 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.45 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.45 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.45 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.44 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.44 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.44 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.44 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.43 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.43 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.43 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.43 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.43 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.43 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.43 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.43 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.42 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.42 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.42 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.42 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.42 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.41 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.41 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.41 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.41 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.4 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.4 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.4 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.4 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.4 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.4 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.4 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.39 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.39 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.39 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.39 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.39 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.39 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.39 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.38 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.38 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.37 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.37 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.36 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.36 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.36 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.36 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.36 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.36 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.36 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.36 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.36 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.36 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.35 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.35 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.35 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.35 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.35 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.35 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.35 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.35 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.34 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.34 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.34 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.34 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.34 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.34 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.33 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.33 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.33 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.33 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.32 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.32 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.32 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.32 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.31 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.31 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.31 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.31 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.31 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.3 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.3 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.3 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.29 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.29 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.29 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.28 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.27 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.27 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.27 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.26 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.26 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.26 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.25 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.25 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.24 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.24 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.23 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.23 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.22 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.22 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.22 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.22 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.21 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.21 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.2 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.2 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.2 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.19 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.18 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.18 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.18 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.15 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.13 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.12 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.12 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.12 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.11 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.11 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.1 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.1 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.1 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.09 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.07 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.06 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.06 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.06 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.04 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.03 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.02 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.01 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.98 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.94 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.94 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.91 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.86 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.86 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.85 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.85 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.83 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.8 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.78 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.73 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.73 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.72 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.59 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.59 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.58 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.52 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.5 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.45 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.45 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.43 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.38 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.34 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.33 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.31 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.25 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.18 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.16 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.14 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.1 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.85 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.84 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.8 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.59 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.53 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.48 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.37 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.3 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.15 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.08 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.02 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.83 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.81 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.51 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.38 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.22 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.07 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.01 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.94 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.82 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.8 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.77 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.71 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.68 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.58 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.53 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.48 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.38 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.38 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.36 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.34 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.32 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.28 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.26 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.17 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.17 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.16 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.11 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.08 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.05 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.92 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.91 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.87 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.8 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.79 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 94.55 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.5 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.46 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.31 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.26 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.24 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.24 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 94.23 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 94.08 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.06 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.03 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.93 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 93.87 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.74 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.72 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.68 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.47 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.45 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.45 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.4 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.34 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.25 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 93.19 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.1 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.08 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.07 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 92.61 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.21 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 92.13 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 92.06 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.06 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.99 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 91.95 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.86 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.77 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 91.6 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 91.52 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 91.4 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.38 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 91.24 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.03 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 90.95 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 90.85 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 90.83 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 90.82 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 90.36 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.21 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 90.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 89.78 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.68 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 89.43 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 89.29 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.27 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 89.23 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.19 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 89.16 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 88.98 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 88.85 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 88.78 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 88.61 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 88.52 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 88.26 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.23 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.14 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 88.03 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 87.89 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 87.82 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 87.76 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 87.71 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 87.48 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 87.28 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 87.14 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 87.12 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 87.1 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 87.07 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 86.93 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 86.92 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 86.9 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 86.59 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 86.46 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 86.29 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 86.2 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 86.15 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 86.01 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.95 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 85.88 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 85.78 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 85.48 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 85.46 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 84.92 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 84.89 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 84.81 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 84.67 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 84.48 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 84.46 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 84.27 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 84.25 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 84.04 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 84.03 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 83.94 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 83.78 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 83.68 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 83.57 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 83.29 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 83.11 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 82.98 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 82.94 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 82.76 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 82.24 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 81.74 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 81.65 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 81.58 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 81.34 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 81.25 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 81.22 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 81.12 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 81.07 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 81.04 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 81.02 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 80.91 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 80.81 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 80.79 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 80.7 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 80.69 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 80.47 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 80.46 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 80.36 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 80.23 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 80.13 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 80.12 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 80.05 |
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-62 Score=474.87 Aligned_cols=319 Identities=39% Similarity=0.712 Sum_probs=286.8
Q ss_pred ccccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHH
Q 015306 82 TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAK 161 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~ 161 (409)
..++.||++|+++++|..||+|..|+.+|.++|.++....+|++|||||||+|++++++|++|+++|+|||.|++++.|+
T Consensus 43 ~~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~ 122 (376)
T 4hc4_A 43 ERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAR 122 (376)
T ss_dssp ------CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHH
T ss_pred cchhhhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHH
Confidence 44578999999999999999999999999999998777789999999999999999999999999999999988779999
Q ss_pred HHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccc
Q 015306 162 QIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241 (409)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 241 (409)
+++..|++.++|++++++++++.++ ++||+|||+++++++.++.+++.++.++.++|||||.++|+.+++|++++++..
T Consensus 123 ~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~apie~~~ 201 (376)
T 4hc4_A 123 EVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQM 201 (376)
T ss_dssp HHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH
T ss_pred HHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEEeccch
Confidence 9999999999999999999999988 899999999999999999999999999999999999999999999999999854
Q ss_pred cchhhhcccccc---ccccchhhhhhhc------cCCeEEeeCCCcccCcccceeEeeCCCCCCCC---CceeeeeEEEE
Q 015306 242 YKDDKIEFWNNV---YGFDMSCIKKQAM------MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGD---ASFTAPFKLVA 309 (409)
Q Consensus 242 ~~~~~~~~w~~~---~g~d~~~~~~~~~------~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~---~~~~~~~~~~~ 309 (409)
+ .....+|.++ ||||++++..... .+|+++.+.+..+|++|+.+++|||.+.+.++ ..+..+|++.+
T Consensus 202 l-~~~i~~w~~v~~~yGfd~s~~~~~~~~~~~~~~e~~v~~~~~~~~Ls~p~~i~~~D~~~~~~~~~~~~~~~~~f~~~~ 280 (376)
T 4hc4_A 202 L-EWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCSC 280 (376)
T ss_dssp H-HHHHHGGGGHHHHHSCCCGGGHHHHHHHHHSSCEEEEECCCGGGBCSCCEEEEEEETTCTTHHHHHHHCEEEEEEEEC
T ss_pred h-hhhhcchhccccccCcCchhhhhhhhhhhcccCceEEEeecccccccCCEEEEEEECCCCCccccccccceeEEEEEe
Confidence 4 4457789876 9999999877653 46888888899999999999999999877542 34677889999
Q ss_pred eecceEeEEEEEEEEEEcC--CCceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEE
Q 015306 310 QRNDYIHALVAYFDVTFTK--CHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDI 387 (409)
Q Consensus 310 ~~~g~~~g~~~wf~~~l~~--~~~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~ 387 (409)
.++|.+|||++||++.|++ ++.++.|| |+|..+.|||+|++|+|++|+.|++|++|++++.+++++.++|+++|
T Consensus 281 ~~~g~vhg~~~WFd~~f~~~~~~~~v~lS----T~P~~~~THW~Q~v~~L~~Pi~V~~G~~I~g~i~~~~~~~n~R~~~i 356 (376)
T 4hc4_A 281 YGSAPMHGFAIWFQVTFPGGESEKPLVLS----TSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRV 356 (376)
T ss_dssp CSSEEEEEEEEEEEEEECCCC--CCEEEE----CCTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEE
T ss_pred cCCcEEEEEEEEEEEEecCCCCCCceEEe----CCCCcCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCceeEE
Confidence 9999999999999999975 24578999 99999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcceeeeecceEEeeeC
Q 015306 388 MLKYSLQGRHSAISRIQYYKMR 409 (409)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~ 409 (409)
+|+|+++++..+ ++.|+|+
T Consensus 357 ~i~~~~~~~~~~---~~~~~~~ 375 (376)
T 4hc4_A 357 LLRYKVGDQEEK---TKDFAME 375 (376)
T ss_dssp EEEEEETTSCCE---EEEEEEC
T ss_pred EEEEEeCCCCcc---eEEEeCC
Confidence 999999987644 4889986
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-56 Score=432.96 Aligned_cols=325 Identities=60% Similarity=1.026 Sum_probs=299.6
Q ss_pred CccccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHH
Q 015306 81 KTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160 (409)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a 160 (409)
+...+.||+.|+.+.+|..|++|..|+..|.++|.......++++|||||||+|.+++.+++.|+.+|+|+|+|++++.|
T Consensus 25 ~~~~~~yf~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a 104 (349)
T 3q7e_A 25 MTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 104 (349)
T ss_dssp ------------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHH
T ss_pred cchHHHHHHhhhhhHHHHHHhccHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHH
Confidence 44557899999999999999999999999999998776778899999999999999999999988899999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEcccc
Q 015306 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240 (409)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~ 240 (409)
++++..+++.++++++++|+++++++.++||+|+++++++++.++..++.++.++.++|||||+++|..+..++.++...
T Consensus 105 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~ 184 (349)
T 3q7e_A 105 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDR 184 (349)
T ss_dssp HHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCH
T ss_pred HHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceEEEeeecCh
Confidence 99999999998999999999999888889999999998888888999999999999999999999999999999999998
Q ss_pred ccchhhhccccccccccchhhhhhhccCCeEEeeCCCcccCcccceeEeeCCCCCCCCCceeeeeEEEEeecceEeEEEE
Q 015306 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVA 320 (409)
Q Consensus 241 ~~~~~~~~~w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 320 (409)
.+......+|.+++|+|++.+.+..+.+|+++.+++..++++|+.+.++|+.+.+.+++.+..++++.+.++|.+|||++
T Consensus 185 ~~~~~~~~~w~~~~G~d~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~g~~~ 264 (349)
T 3q7e_A 185 QYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVA 264 (349)
T ss_dssp HHHHHHTGGGGCBTTBCCGGGHHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGGSEEEEEEEEBCSSEEEEEEEE
T ss_pred hhhhhhhcccccccCcchHHHhHhhhcCcEEEEEChhhEecccEEEEEEEcccCchhhcceeeeEEEEEccCCEEEEEEE
Confidence 88888889999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred EEEEEEcCCCceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEEcceeeee
Q 015306 321 YFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAI 400 (409)
Q Consensus 321 wf~~~l~~~~~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 400 (409)
||++.|+++++++.|| |+|..+.|||+|++|+|++|+.|++|++|++++++++++.++|+++|+|+|+++|+..++
T Consensus 265 ~Fd~~~~~~~~~v~ls----t~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 340 (349)
T 3q7e_A 265 YFNIEFTRCHKRTGFS----TSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCEL 340 (349)
T ss_dssp EEEEECTTSSSCCEEE----CSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCSSCEEEEEEEEEECSSCEE
T ss_pred EEEEEecCCCCccEEE----CCCCcCCCcceeEEEEECCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEEeCCccccc
Confidence 9999999777789999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeeeC
Q 015306 401 SRIQYYKMR 409 (409)
Q Consensus 401 ~~~~~~~~~ 409 (409)
.++++|+||
T Consensus 341 ~~~~~~~~~ 349 (349)
T 3q7e_A 341 SCSTDYRMR 349 (349)
T ss_dssp EEEEEEEEC
T ss_pred ccCceEecC
Confidence 999999997
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=426.11 Aligned_cols=320 Identities=51% Similarity=0.905 Sum_probs=301.3
Q ss_pred ccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHH
Q 015306 86 YYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVE 165 (409)
Q Consensus 86 ~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~ 165 (409)
.||+.|+++.+|..|++|..|+..|.++|.+.....++.+|||||||+|.+++.+++.|+.+|+|+|++++++.|++++.
T Consensus 2 ~Yf~~y~~~~~~~~ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~ 81 (328)
T 1g6q_1 2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVE 81 (328)
T ss_dssp CCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHH
T ss_pred chhhhhcCchHHHHHhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHH
Confidence 59999999999999999999999999999877777789999999999999999999998889999999998899999999
Q ss_pred HcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccchh
Q 015306 166 ANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD 245 (409)
Q Consensus 166 ~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~ 245 (409)
.+++.++++++.+|+.+++++.++||+|+++++++++.++..+..++.++.++|||||+++|+.+++|+.++....+...
T Consensus 82 ~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 161 (328)
T 1g6q_1 82 LNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDE 161 (328)
T ss_dssp HTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHH
T ss_pred HcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEEecCchhhhh
Confidence 99998899999999999887778999999999888888888999999999999999999999999999999998877777
Q ss_pred hhccccccccccchhhhhhhccCCeEEeeCCCcccCcccceeEeeCCCCCCCCCceeeeeEEEEeecceEeEEEEEEEEE
Q 015306 246 KIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVT 325 (409)
Q Consensus 246 ~~~~w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~ 325 (409)
...+|.+.+|++++.+.+....+|+++.+++..++++|+.++++||.+...+++.+...+++.+.++|.+|||++||+++
T Consensus 162 ~~~~w~~~~gf~~~~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~~ 241 (328)
T 1g6q_1 162 KLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDIV 241 (328)
T ss_dssp HHHHTTCBTTBCCTTHHHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEEE
T ss_pred hhcccccccCcChHHHhhhhhcCCeEEEeccceeecCCEEEEEEECCCCChhHhceeeeEEEEEecCcEEEEEEEEEEEE
Confidence 77899999999999999999999999999999999999999999999998888888899999999999999999999999
Q ss_pred EcC--CCceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEEcceee-----
Q 015306 326 FTK--CHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHS----- 398 (409)
Q Consensus 326 l~~--~~~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~----- 398 (409)
|++ +++++.+| |+|..+.+||+|++|+|++|+.|++|++|++++++++++.++|+++|+++|+++|+..
T Consensus 242 ~~~~~~~~~v~ls----t~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 317 (328)
T 1g6q_1 242 FPAPKGKRPVEFS----TGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSR 317 (328)
T ss_dssp CCCCTTSCCCEEE----CSTTSCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETTEEEEEEEEEEEEEECCSSTHHHH
T ss_pred cCCCCCCCceEEE----CCCCcCCCcceeEEEEeCCceecCCCCEEEEEEEEEECCCCCceEEEEEEEEecCccCccccc
Confidence 986 56689999 9999999999999999999999999999999999999999999999999999999988
Q ss_pred eecceEEeeeC
Q 015306 399 AISRIQYYKMR 409 (409)
Q Consensus 399 ~~~~~~~~~~~ 409 (409)
...++|+|+|+
T Consensus 318 ~~~~~~~~~~~ 328 (328)
T 1g6q_1 318 SRKNEGSYLMH 328 (328)
T ss_dssp CEEEEEEEEEC
T ss_pred ccccceeEEeC
Confidence 88899999996
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-52 Score=403.04 Aligned_cols=314 Identities=48% Similarity=0.851 Sum_probs=289.2
Q ss_pred ccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHH
Q 015306 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI 163 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~ 163 (409)
+..||+.|..+.+|..|++|..|+..|.++|.+.....++.+|||||||+|.+++.+++.|+.+|+|+|+|++++.|+++
T Consensus 26 d~~Y~~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~ 105 (340)
T 2fyt_A 26 DGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDI 105 (340)
T ss_dssp ----CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHH
T ss_pred hhhHHHhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHH
Confidence 35599999999999999999999999999999887788999999999999999999999988899999999988999999
Q ss_pred HHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccc
Q 015306 164 VEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK 243 (409)
Q Consensus 164 ~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~ 243 (409)
+..+++.++++++.+|+.+++++.++||+|+++++++++.++..++.++.++.++|||||+++|+.+++++.++....+.
T Consensus 106 ~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~ 185 (340)
T 2fyt_A 106 IRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKH 185 (340)
T ss_dssp HHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHH
T ss_pred HHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEEEEEecchhHh
Confidence 99999988899999999998887789999999998888888889999999999999999999999999999999888887
Q ss_pred hhhhccccccccccchhhhhhhccCCeEEeeCCCcccCcccceeEeeCCCCCCCCCceeeeeEEEEeecceEeEEEEEEE
Q 015306 244 DDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFD 323 (409)
Q Consensus 244 ~~~~~~w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~ 323 (409)
.....+|.+.+|++++.+.+..+.+|+++.+++..++++|+.++++||.+...++..+...+.+.+.++|.+|||++||+
T Consensus 186 ~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wfd 265 (340)
T 2fyt_A 186 ADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFD 265 (340)
T ss_dssp HHHTGGGGCBTTBCCGGGHHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSCEEEEEEEEEEE
T ss_pred hhhhcccccccCcChHHHHHhhhcCcEEEEechhhcccCCEEEEEEECCCCcccccceEeeEEEEEccCcEEEEEEEEEE
Confidence 77888999999999999999888999999888889999999999999999888888888899999999999999999999
Q ss_pred EEEc-CCCceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEEcceeeeecc
Q 015306 324 VTFT-KCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISR 402 (409)
Q Consensus 324 ~~l~-~~~~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 402 (409)
+.|+ ++++++.|| |+|..+.+||+|++|+|++|+.|++|++|++++++++++.+.|+++|+|+|+. +
T Consensus 266 ~~~~~~~~~~v~ls----t~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~--------~ 333 (340)
T 2fyt_A 266 IYFEKNCHNRVVFS----TGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLNN--------S 333 (340)
T ss_dssp EEECTTCSSCEEEE----CSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEETT--------E
T ss_pred EEeecCCCCCEEEE----CCCCcCCCccccEEEEeCCceEcCCCCEEEEEEEEEECCCCCceEEEEEEEEc--------c
Confidence 9993 455689999 99999999999999999999999999999999999999999999999999963 3
Q ss_pred eEEeeeC
Q 015306 403 IQYYKMR 409 (409)
Q Consensus 403 ~~~~~~~ 409 (409)
+|.|+||
T Consensus 334 ~~~~~~~ 340 (340)
T 2fyt_A 334 TQTYGLQ 340 (340)
T ss_dssp EEEEEEC
T ss_pred eEEEecC
Confidence 6888886
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-51 Score=401.84 Aligned_cols=313 Identities=33% Similarity=0.619 Sum_probs=284.6
Q ss_pred ccccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHH
Q 015306 82 TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAK 161 (409)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~ 161 (409)
...+.||+.|+.+..|..|++|..++..|.++|.......++.+|||||||+|.+++.+++.|+++|+|+|+|++++.|+
T Consensus 23 ~~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~ 102 (376)
T 3r0q_C 23 VDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHAR 102 (376)
T ss_dssp -----CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHH
Confidence 34477999999999999999999999999999988888889999999999999999999999888999999999889999
Q ss_pred HHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccc
Q 015306 162 QIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241 (409)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 241 (409)
+++..+++.++++++++|++++.++ ++||+|+++++++++.++.++..++.++.++|||||+++|+.+++|..++....
T Consensus 103 ~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~ 181 (376)
T 3r0q_C 103 ALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNI 181 (376)
T ss_dssp HHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEEEEEEECCTH
T ss_pred HHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeEEEEeecchH
Confidence 9999999999999999999999887 899999999988999888899999999999999999999999999999998876
Q ss_pred cchhhh----------ccc---cccccccchhhhhh--------hccCCeEEeeCCCcccCcccceeEeeCCCCCCCCCc
Q 015306 242 YKDDKI----------EFW---NNVYGFDMSCIKKQ--------AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300 (409)
Q Consensus 242 ~~~~~~----------~~w---~~~~g~d~~~~~~~--------~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~ 300 (409)
+..... .|| .+.+|++++.+.+. .+.+|+++.+.+..++++|+.++++||.+...+++.
T Consensus 182 ~~~~~~~~~~~~~~W~~fw~~~~~~~G~d~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~lt~~~~~~~~d~~~~~~~~l~ 261 (376)
T 3r0q_C 182 ADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIE 261 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCGGGHHHHHHHHHHHHTSBCEEECCCGGGBCBCCEEEEEEETTTCCGGGTS
T ss_pred HhhhhhhhhhhhhhhhhhhhccCccccCChHHHHhhhhhhhhhhcccCceEEEEChHHccCCCeEEEEEEcCcCCHHHhc
Confidence 654443 678 78999999999887 568999999999999999999999999999888875
Q ss_pred -eeeeeEEEE-eecceEeEEEEEEEEEEcCC-----CceeEeecccccCCC-CCCCCceeEEEecCCceecCCCCEEEEE
Q 015306 301 -FTAPFKLVA-QRNDYIHALVAYFDVTFTKC-----HKLMGFSTVYNTGPK-SRATHWKQTVLYLEDVLTICEGEAISGS 372 (409)
Q Consensus 301 -~~~~~~~~~-~~~g~~~g~~~wf~~~l~~~-----~~~~~ls~~~~t~p~-~~~~~W~q~v~~l~~p~~v~~g~~i~~~ 372 (409)
+..+|++.+ .++|.+|||++||+++|++. ++++.|| |+|. .+.|||+|++|+|++|+.|++|++|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~~~~~v~lS----t~P~~~~~thW~q~~~~l~~p~~v~~g~~i~~~ 337 (376)
T 3r0q_C 262 EVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELT----TAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLG 337 (376)
T ss_dssp EEEEEEEEBCSCSCEEEEEEEEEEEEEEEEETTEEEEEEEEEE----CCCCSSCCCTTCEEEEEEEEEEEECTTCEEEEE
T ss_pred ccccceEEEEeccCceEEEEEEEEEEEecCCccCCCCCccEEE----CCCCcCCCCceeeEEEEECCceecCCCCEEEEE
Confidence 788999999 99999999999999999742 2468999 9998 5689999999999999999999999999
Q ss_pred EEEeeCCCCCceeEEEEEEEEcceeee
Q 015306 373 LTVAPNKKNPRDVDIMLKYSLQGRHSA 399 (409)
Q Consensus 373 ~~~~~~~~~~r~~~~~~~~~~~~~~~~ 399 (409)
+.+++++.++|+++|+|+|.++++...
T Consensus 338 ~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (376)
T 3r0q_C 338 LLMSRSKENHRLMEIELNCEIKEASGN 364 (376)
T ss_dssp EEEEECSSCTTSEEEEEEEEEECSSSC
T ss_pred EEEEECCCCCeeEEEEEEEEecCcCCC
Confidence 999999999999999999999988754
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=370.00 Aligned_cols=292 Identities=21% Similarity=0.294 Sum_probs=251.0
Q ss_pred hhHHhhcChHhHHHHHHHHHhcc--------CCCCCCEEEEEcCCCChHHHHHHHcCC---C--EEEEEecHHHHHHHHH
Q 015306 96 IHEEMLKDVVRTKSYQNVIYQNK--------FLFKDKVVLDVGAGTGILSLFCAKAGA---A--HVYAVECSQMANMAKQ 162 (409)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~l~~~~--------~~~~~~~VLDlGcG~G~l~~~la~~g~---~--~V~~vD~s~~~~~a~~ 162 (409)
.++.+-+|..++..|.+||.++. ....+.+|||||||+|.|+..++++|+ . +|+|||.|+++..|++
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~ 402 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLE 402 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHH
T ss_pred hhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Confidence 34457789999999999997642 223456899999999999666666543 3 7899999998888999
Q ss_pred HHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEcccccc
Q 015306 163 IVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 242 (409)
Q Consensus 163 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~ 242 (409)
....|++.++|+++++|++++.+| +++|+||||+||+++.+|.++ .++.++.++|||||+++|+.+++|++|+++..+
T Consensus 403 ~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgGimiPs~atlyiapi~~~~l 480 (637)
T 4gqb_A 403 NWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSELLGSFADNELSP-ECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKL 480 (637)
T ss_dssp HHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEESCEEEEEEEEEECHHH
T ss_pred HHHhccCCCeEEEEeCcceeccCC-cccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCcEEccccceEEEEEecCHHH
Confidence 999999999999999999999998 899999999999999999987 688999999999999999999999999999999
Q ss_pred chhhhccccccccccchhhhhhhccCCeEEeeCCCcccCcccceeEeeCCCCCC-CCCceeeeeEEEEeecceEeEEEEE
Q 015306 243 KDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGP-GDASFTAPFKLVAQRNDYIHALVAY 321 (409)
Q Consensus 243 ~~~~~~~w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~w 321 (409)
+.+...+|...++++.. +..|++..+.+...+++|+.+++||+.+... .+..+..+++|++.++|++|||++|
T Consensus 481 ~~e~~~~~~~~~~~~~~------~~~p~Vv~~~~~~~Ls~p~~~~~fd~~~~~~~~~~~~~~~~~f~i~~~g~vhGf~~w 554 (637)
T 4gqb_A 481 YNEVRACREKDRDPEAQ------FEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLHGFAGY 554 (637)
T ss_dssp HHHHHTTCCTTSCTTGG------GGSCEECBCCSCEECSCCEEEEEEESSCCSTTCCCCEEEEEEEECCSCEEEEEEEEE
T ss_pred HHHHHhcccccccchhh------cCCcEEEEecCccccCCCEEEEEEECCCCCccccceEEEEEEEEecCCcEEEEEEEE
Confidence 88888888888777542 4678888888889999999999999987554 3456788999999999999999999
Q ss_pred EEEEEcCCCceeEeecccccCCCC---CCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEEccee-
Q 015306 322 FDVTFTKCHKLMGFSTVYNTGPKS---RATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRH- 397 (409)
Q Consensus 322 f~~~l~~~~~~~~ls~~~~t~p~~---~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~- 397 (409)
|++.|++ ++.|| |+|.. +.|||+|++|+|++|+.|++|++|+++|+++.+.. .|+++|.++...
T Consensus 555 FD~~f~~---~V~LS----T~P~~~s~~~THW~Q~vfpL~~Pl~V~~Gd~I~~~~~R~~d~~-----kVWYEW~v~~p~~ 622 (637)
T 4gqb_A 555 FETVLYQ---DITLS----IRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK-----KVWYEWAVTAPVC 622 (637)
T ss_dssp EEEEEET---TEEEE----CSGGGCCTTCCSCCCEEEEEEEEEEECTTCEEEEEEEEEECSS-----EEEEEEEEEESSC
T ss_pred EEEEeeC---CeEEE----CCCCCCCCCCCcccCeEEEeCCCeEECCCCEEEEEEEEEeCCC-----ceeEEEEEeCCcC
Confidence 9999996 79999 99963 46999999999999999999999999999987763 588888877654
Q ss_pred ---eeecceEEeee
Q 015306 398 ---SAISRIQYYKM 408 (409)
Q Consensus 398 ---~~~~~~~~~~~ 408 (409)
.|.+| .+|.|
T Consensus 623 s~ihN~~G-r~y~i 635 (637)
T 4gqb_A 623 SAIHNPTG-RSYTI 635 (637)
T ss_dssp CCCBSGGG-SSCCE
T ss_pred ccccCCCC-ceeee
Confidence 45666 45554
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=342.26 Aligned_cols=306 Identities=37% Similarity=0.588 Sum_probs=259.1
Q ss_pred ccccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHH
Q 015306 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI 163 (409)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~ 163 (409)
.+.||+.|..+..|..|++|..++..|.++|.+.....++.+|||||||+|.+++.+++.|+.+|+|+|+|++++.|+++
T Consensus 12 ~~~y~~~y~~~~~~~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~ 91 (348)
T 2y1w_A 12 AVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVL 91 (348)
T ss_dssp HHHHHHHHTCHHHHHHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHH
Confidence 46799999999999999999999999999999888888999999999999999999999988899999999977999999
Q ss_pred HHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccc
Q 015306 164 VEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK 243 (409)
Q Consensus 164 ~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~ 243 (409)
+..+++.++++++.+|+++++++ ++||+|+++++++++..+..+ ..+..+.++|||||.++|+.++++..++....+.
T Consensus 92 ~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~-~~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~~ 169 (348)
T 2y1w_A 92 VKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERML-ESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLY 169 (348)
T ss_dssp HHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBTTBTTTSHH-HHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHH
T ss_pred HHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchhcCChHHHH-HHHHHHHhhcCCCeEEEEecCcEEEEEecchHHh
Confidence 99999988899999999998776 789999999887777665554 4455678999999999999999999998876554
Q ss_pred hh---hhcccc--ccccccchhhhhhh----ccCCeEEeeCCCcccCcccceeEeeCCCCCCCCCc-eeeeeEEEEeecc
Q 015306 244 DD---KIEFWN--NVYGFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS-FTAPFKLVAQRND 313 (409)
Q Consensus 244 ~~---~~~~w~--~~~g~d~~~~~~~~----~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~g 313 (409)
.. ...+|. .++|+++..+.... +..|+++.... .+...+.....+||.+...+++. +..+++|.+.++|
T Consensus 170 ~~~~~~~~~w~~~~~~g~d~~~l~~~~~~~~f~~p~~d~~~~-~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~g 248 (348)
T 2y1w_A 170 MEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDI-RILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSG 248 (348)
T ss_dssp HHHHHHHGGGCCSCBTTBCCGGGHHHHHHHHHTSCEEECCCG-GGBCBCCEEEEEETTTCCGGGGSEEEEEEEEEBSSCE
T ss_pred hhhccccCcccccccCcccHHHhhhHHHhhhccCCeEEeECC-eeecCcceEEEEECCcCChHHhceeeeeEEEEEccCc
Confidence 32 345673 57899998876654 45688776543 34444445677899988877764 5788999999999
Q ss_pred eEeEEEEEEEEEEcCCCceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEE
Q 015306 314 YIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 393 (409)
Q Consensus 314 ~~~g~~~wf~~~l~~~~~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~ 393 (409)
.+|||++||+++|++++.++.|| |+|..+.+||+|++|+|++|+.|++|++|++++++++++.+. +++++++.+
T Consensus 249 ~~~g~~~wfd~~~~~~~~~v~lS----t~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~--~~~~~~~~~ 322 (348)
T 2y1w_A 249 LVHGLAFWFDVAFIGSIMTVWLS----TAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQS--YDISIVAQV 322 (348)
T ss_dssp EEEEEEEEEEEEEECSSCEEEEE----CCTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECTTSS--EEEEEEEEE
T ss_pred EEEEEEEEEEEEEcCCCCceEEE----CCCCcCCCeeeeEEEeeCCceEeCCCCEEEEEEEEEECCCCC--cEEEEEEEE
Confidence 99999999999999766689999 999999999999999999999999999999999999988654 666777777
Q ss_pred cceee
Q 015306 394 QGRHS 398 (409)
Q Consensus 394 ~~~~~ 398 (409)
++...
T Consensus 323 ~~~~~ 327 (348)
T 2y1w_A 323 DQTGS 327 (348)
T ss_dssp TTTCC
T ss_pred ccccc
Confidence 77654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-43 Score=355.19 Aligned_cols=286 Identities=18% Similarity=0.238 Sum_probs=241.5
Q ss_pred hhhHHhhcChHhHHHHHHHHHhccC-CC----CCCEEEEEcCCCChHHHHHHHc----C----------CCEEEEEecHH
Q 015306 95 GIHEEMLKDVVRTKSYQNVIYQNKF-LF----KDKVVLDVGAGTGILSLFCAKA----G----------AAHVYAVECSQ 155 (409)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~l~~~~~-~~----~~~~VLDlGcG~G~l~~~la~~----g----------~~~V~~vD~s~ 155 (409)
..+..|.+|..|+..|.+||.++.. .. .+++|||||||+|.|+..++++ | +.+|+|||.|+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp 456 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNP 456 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCH
T ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCCh
Confidence 4556799999999999999987642 21 2468999999999997654432 2 23999999999
Q ss_pred -HHHHHHHHHHHcCCCCcEEEEEcccccccCC-----CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 156 -MANMAKQIVEANGFSNVITVLKGKIEEIELP-----VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 156 -~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++..++... .|++.++|+++++|++++.++ .+++|+|||++||+++.+|.. +.++..+.++|||||++||+.
T Consensus 457 ~A~~~l~~~~-~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~-pe~Ld~v~r~Lkp~Gi~iP~~ 534 (745)
T 3ua3_A 457 NAIVTLKYMN-VRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELS-PECLDGVTGFLKPTTISIPQK 534 (745)
T ss_dssp HHHHHHHHHH-HHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSH-HHHHHTTGGGSCTTCEEESCE
T ss_pred HHHHHHHHHH-hcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhcc-HHHHHHHHHhCCCCcEEECCc
Confidence 665555544 489999999999999999873 489999999999999988755 457777789999999999999
Q ss_pred CceEEEEccccccchhhhccccc--cccccc-------------------hhhhhhhccCCeEEeeCCCcccCc-cccee
Q 015306 230 ASLYLTAIEDAEYKDDKIEFWNN--VYGFDM-------------------SCIKKQAMMEPLVDTVDQNQIVTN-CQLLK 287 (409)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~w~~--~~g~d~-------------------~~~~~~~~~~p~~~~~~~~~~ls~-p~~~~ 287 (409)
+++|++|+.++.++.+...++.. ++||+. ++.....+.+|++..+.+..+|++ |++++
T Consensus 535 ~t~ylaPi~~~~l~~~v~~~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~~~~~~a~e~PyVv~l~~~~~Ls~~pq~vf 614 (745)
T 3ua3_A 535 YTSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVF 614 (745)
T ss_dssp EEEEEEEEECHHHHHHHHTCCCCGGGTTSCCSSSCCCEECTTSCEECCCTTCHHHHHHSSCEEECCCSCEESSSSCEEEE
T ss_pred cEEEEEEecCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccEEEeeccceecCCCCceEE
Confidence 99999999999887766555532 345521 344666789999999999999999 99999
Q ss_pred EeeCCCCCCCCCceeeeeEEEEeecceEeEEEEEEEEEEcCCCceeEeecccccCCCCC---CCCceeEEEecCCceecC
Q 015306 288 TMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTVYNTGPKSR---ATHWKQTVLYLEDVLTIC 364 (409)
Q Consensus 288 ~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~ls~~~~t~p~~~---~~~W~q~v~~l~~p~~v~ 364 (409)
+||+.+...++..+...++|.+.++|.+|||++||++.|++ ++.|| |+|..+ .+||+|++|||++|+.|+
T Consensus 615 tFdhp~~~~~d~~r~~~~~F~~~r~g~iHGfagwFDi~Lyk---~V~LS----T~P~t~s~~mThWfQtfFPL~ePL~V~ 687 (745)
T 3ua3_A 615 TFEHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYK---TVMLS----IEPSTHTPGMVSWFPAVIPLRDQLRVG 687 (745)
T ss_dssp EEESSCTTCCCSCEEEEEEEECCSSEEEEEEEEEEEEEEET---TEEEE----CSSTTCCTTCCSCCCEEEEEEEEEEEC
T ss_pred EEECCCCCccccceeEEEEEEeCCCcEEEEEEEEEEEEecC---CcEEe----cCCCCCCCCCccceeEEEecCCceEeC
Confidence 99999988788889999999999999999999999999996 79999 999875 689999999999999999
Q ss_pred CCCEEEEEEEEeeCCCCCceeEEEEEEEEc
Q 015306 365 EGEAISGSLTVAPNKKNPRDVDIMLKYSLQ 394 (409)
Q Consensus 365 ~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~ 394 (409)
+|+.|+++++++.+. ..||++|.++
T Consensus 688 ~GdeI~g~~~R~~d~-----~kVWYEW~v~ 712 (745)
T 3ua3_A 688 EGDRISLKIDRKVDN-----TGVWYEWHVE 712 (745)
T ss_dssp TTCEEEEEEEEEEET-----TEEEEEEEEE
T ss_pred CCCEEEEEEEEEcCC-----CCEEEEEEEE
Confidence 999999999998765 3788888876
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=336.09 Aligned_cols=305 Identities=36% Similarity=0.585 Sum_probs=255.0
Q ss_pred cccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHH
Q 015306 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~ 164 (409)
+.|++.|.....+..|+.|..+++.+.+++.......++.+|||||||+|.+++.+++.|+.+|+|+|+|++++.|++++
T Consensus 121 ~~~~~~y~~~~~~~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~ 200 (480)
T 3b3j_A 121 VQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLV 200 (480)
T ss_dssp CEEEEGGGCSCHHHHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHH
T ss_pred hhHHHHHhhhccchhhhcChHhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHH
Confidence 35666776656688899999999999999988777778899999999999999999998888999999999779999999
Q ss_pred HHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccch
Q 015306 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKD 244 (409)
Q Consensus 165 ~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~ 244 (409)
..+++.++++++.+|+.+++++ ++||+|+++++++++..+..+. .+..+.++|||||.++|....++..++....+..
T Consensus 201 ~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~-~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~ 278 (480)
T 3b3j_A 201 KSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLE-SYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYM 278 (480)
T ss_dssp HHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHHHTCHHHHH-HHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHH
T ss_pred HHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHhcCcHHHHH-HHHHHHHhcCCCCEEEEEeceeeeeccCchHHHH
Confidence 9999988899999999998776 7899999998877776665554 4457789999999999999999999988765543
Q ss_pred h---hhcccc--ccccccchhhhhhh----ccCCeEEeeCCCcccCcccceeEeeCCCCCCCCCc-eeeeeEEEEeecce
Q 015306 245 D---KIEFWN--NVYGFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS-FTAPFKLVAQRNDY 314 (409)
Q Consensus 245 ~---~~~~w~--~~~g~d~~~~~~~~----~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~g~ 314 (409)
+ ...+|. .++|+++..+.... +..|+++........+.+. ...+||.+...+++. ...+++|.+.++|.
T Consensus 279 e~~~~~~~w~~~~~~g~dl~~l~~~~~~~~f~~pvvd~~~~~~~y~~tl-~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~ 357 (480)
T 3b3j_A 279 EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSV-KYTVNFLEAKEGDLHRIEIPFKFHMLHSGL 357 (480)
T ss_dssp HHHHHHHHHHSSCBTTBCCGGGHHHHHHHHTTSCEECCCCSTTBCSCCE-EEEEETTTCCTTTTTEEEEEEEEECSSCEE
T ss_pred HHhhccCccccccCCCcChhhhhhHHHHhccCCcEEEEeecccccchhh-hhhhhhhcCChhhhcceeeeEEEEEccCcE
Confidence 2 235663 68899998876654 4567777655444455544 468999998887775 47889999999999
Q ss_pred EeEEEEEEEEEEcCCCceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEEc
Q 015306 315 IHALVAYFDVTFTKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQ 394 (409)
Q Consensus 315 ~~g~~~wf~~~l~~~~~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~ 394 (409)
+|||++||+++|++++.++.|| |+|..+.+||+|++|+|++|+.|++|++|++++++++++.+ +++|+++|.++
T Consensus 358 ~hg~~~wFd~~~~~~~~~v~lS----T~P~~~~thW~q~~~~l~~p~~v~~g~~i~g~~~~~~~~~~--~~~v~~~~~~~ 431 (480)
T 3b3j_A 358 VHGLAFWFDVAFIGSIMTVWLS----TAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQ--SYDISIVAQVD 431 (480)
T ss_dssp EEEEEEEEEEEEECSSCEEESS----SCCSSSCCCSEEEEEEEEEEEEECTTCEEEEEEEEEECTTS--SEEEEEEEEET
T ss_pred EEEEEEEEEEEEcCCCCceEEe----CCCCcCCCeeeeEEEEeCCceEeCCCCEEEEEEEEEECCCC--CcEEEEEEEEc
Confidence 9999999999999766689999 99999999999999999999999999999999999998754 45777777777
Q ss_pred ceee
Q 015306 395 GRHS 398 (409)
Q Consensus 395 ~~~~ 398 (409)
+...
T Consensus 432 ~~~~ 435 (480)
T 3b3j_A 432 QTGS 435 (480)
T ss_dssp TTCC
T ss_pred cCCc
Confidence 7653
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=145.30 Aligned_cols=107 Identities=18% Similarity=0.285 Sum_probs=91.3
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcC---CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAG---AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g---~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
...++.+|||||||+|.++..+++.. ..+|+|||+|+ |++.|++++...+...+|+++++|+.++++ ++||+|+
T Consensus 67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~ 144 (261)
T 4gek_A 67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVV 144 (261)
T ss_dssp HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEE
T ss_pred hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccce
Confidence 35789999999999999999999852 34899999999 999999999988888889999999998876 5699999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+..+.+++. ......+++++.++|||||+++..
T Consensus 145 ~~~~l~~~~-~~~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 145 LNFTLQFLE-PSERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp EESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeeeeeecC-chhHhHHHHHHHHHcCCCcEEEEE
Confidence 976555443 345568899999999999999854
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-16 Score=145.26 Aligned_cols=107 Identities=20% Similarity=0.308 Sum_probs=95.3
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
...++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|++++...++.++++++.+|+.+++++.++||+|++..
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 3678899999999999999999998777999999999 999999999999998889999999999888778999999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.+++ .+..+++.+.++|||||+++...
T Consensus 123 ~~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 123 AIYNI----GFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp CGGGT----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred Cceec----CHHHHHHHHHHHcCCCCEEEEEE
Confidence 54433 46789999999999999998654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-16 Score=142.81 Aligned_cols=108 Identities=18% Similarity=0.282 Sum_probs=95.2
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
....++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|++++...++.++++++++|+.++++++++||+|++.
T Consensus 42 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 121 (257)
T 3f4k_A 42 NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSE 121 (257)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred hcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEec
Confidence 35677889999999999999999997655999999999 99999999999999888999999999988877899999997
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
.+.+++ .+..++..+.++|||||+++...
T Consensus 122 ~~l~~~----~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 122 GAIYNI----GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp SCSCCC----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ChHhhc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 654433 46789999999999999998653
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=142.92 Aligned_cols=110 Identities=23% Similarity=0.307 Sum_probs=93.1
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
..+.......++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|+++.. ..+++++.+|+.++++++++|
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~f 109 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAY 109 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCE
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCe
Confidence 34454555568899999999999999999998877999999999 9999998765 356999999999998877999
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|++..+ +.+..++..+++.+.++|||||.++..
T Consensus 110 D~v~~~~~---l~~~~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 110 NVVLSSLA---LHYIASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp EEEEEESC---GGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEchh---hhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence 99999765 333366789999999999999999854
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=142.43 Aligned_cols=117 Identities=20% Similarity=0.144 Sum_probs=100.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
.+.+.+.+.....++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++...++.++++++.+|+.++++++
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 44455555566778999999999999999999985456999999999 99999999999998888999999999988887
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++||+|++..+ +.+..+...++..+.++|||||+++..
T Consensus 128 ~~fD~v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~i~ 165 (273)
T 3bus_A 128 ASFDAVWALES---LHHMPDRGRALREMARVLRPGGTVAIA 165 (273)
T ss_dssp TCEEEEEEESC---TTTSSCHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCccEEEEech---hhhCCCHHHHHHHHHHHcCCCeEEEEE
Confidence 89999999655 444456689999999999999998854
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-16 Score=136.53 Aligned_cols=105 Identities=25% Similarity=0.338 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~ 197 (409)
.++.+|||+|||+|.+++.+++.|..+|+|+|+|+ +++.|++++..+++ ++++++++|+.++. ++.++||+|++++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence 57889999999999999988888888999999999 99999999999988 56999999998874 3358999999986
Q ss_pred ccccccChhHHHHHHHHHHh--cccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDK--WLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~--~LkpgG~lip~ 228 (409)
+.. .....+..++..+.+ +|+|||+++..
T Consensus 122 p~~--~~~~~~~~~l~~~~~~~~L~pgG~l~~~ 152 (189)
T 3p9n_A 122 PYN--VDSADVDAILAALGTNGWTREGTVAVVE 152 (189)
T ss_dssp CTT--SCHHHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred CCC--cchhhHHHHHHHHHhcCccCCCeEEEEE
Confidence 521 123567788888888 99999999854
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.1e-16 Score=141.98 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=96.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
....+.......++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++...++.++++++++|+.++++ ++
T Consensus 24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 102 (256)
T 1nkv_A 24 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NE 102 (256)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SS
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CC
Confidence 3344444456778999999999999999999985344999999999 999999999999988789999999999877 58
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+||+|++..+.+ +..++..++.++.++|||||+++..
T Consensus 103 ~fD~V~~~~~~~---~~~~~~~~l~~~~r~LkpgG~l~~~ 139 (256)
T 1nkv_A 103 KCDVAACVGATW---IAGGFAGAEELLAQSLKPGGIMLIG 139 (256)
T ss_dssp CEEEEEEESCGG---GTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred CCCEEEECCChH---hcCCHHHHHHHHHHHcCCCeEEEEe
Confidence 999999965433 3345778899999999999998864
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=137.41 Aligned_cols=115 Identities=20% Similarity=0.288 Sum_probs=96.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
+.+.+.......++ +|||||||+|.++..+++.+..+|+|+|+|+ +++.|++++...++.++++++++|+.+++++++
T Consensus 32 ~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 32 IAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 34444444444455 9999999999999999997555999999999 999999999999988789999999999888888
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+||+|++..+.+ +..++..++..+.++|||||.++..
T Consensus 111 ~~D~v~~~~~l~---~~~~~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 111 YADLIVSRGSVF---FWEDVATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp CEEEEEEESCGG---GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccEEEECchHh---hccCHHHHHHHHHHhCCCCCEEEEE
Confidence 999999976533 3366788999999999999998853
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=141.58 Aligned_cols=115 Identities=18% Similarity=0.080 Sum_probs=97.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
..+.+.......++.+|||||||+|.++..+++. | .+|+|+|+|+ +++.|++++...++.++++++.+|+.++ +
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~ 135 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---D 135 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---C
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---C
Confidence 3444555566788999999999999999999996 7 5999999999 9999999999999988899999999887 4
Q ss_pred CceeEEEEecccccccC------hhHHHHHHHHHHhcccCCeEEEcc
Q 015306 188 TKVDIIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++||+|++..+.+++.. ......++..+.++|||||+++..
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 182 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 182 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEE
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 89999999766544422 256689999999999999999854
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=136.44 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=90.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCC----cEEEEEcccccccCCCCceeEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSN----VITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~~~~~~DvV 193 (409)
..++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++..+++.+ +++++++|+...+.+.++||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 4577899999999999999999964 46999999999 9999999998887764 7999999998776666899999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++..+.+++ .......+++.+.++|||||.++.
T Consensus 107 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~ 139 (217)
T 3jwh_A 107 TVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVT 139 (217)
T ss_dssp EEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred eeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEE
Confidence 997665544 334568899999999999998774
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=140.87 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=91.0
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
...++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++...+++ +++++.+|++++++++++||+|++..
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDERFHIVTCRI 111 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTCEEEEEEES
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCCCCCCEEEEEEhh
Confidence 456889999999999999999999865 999999999 999999999988876 49999999999988888999999975
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+ +.+..++..++.++.++|||||+++..
T Consensus 112 ~---l~~~~d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 112 A---AHHFPNPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp C---GGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred h---hHhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 5 334356789999999999999998853
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-16 Score=142.39 Aligned_cols=104 Identities=17% Similarity=-0.032 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH----------cC------CCCcEEEEEcccccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA----------NG------FSNVITVLKGKIEEI 183 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~----------~~------~~~~i~~~~~d~~~~ 183 (409)
.++.+|||+|||+|..+..+++.|. +|+|||+|+ +++.|++.... .+ ...+++++++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 5778999999999999999999987 999999999 99999776531 00 124699999999998
Q ss_pred cCCC-CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 184 ELPV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 184 ~~~~-~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++. ++||+|++..+..++ .......++..+.++|||||+++
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l-~~~~~~~~l~~~~~~LkpGG~l~ 188 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAI-NPGDHDRYADIILSLLRKEFQYL 188 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhC-CHHHHHHHHHHHHHHcCCCeEEE
Confidence 8753 799999987554444 34567789999999999999986
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-15 Score=131.40 Aligned_cols=107 Identities=17% Similarity=0.163 Sum_probs=87.1
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEe
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISE 196 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVvs~ 196 (409)
...++.+|||+|||+|.++..+++. ..+|+|+|+|+ +++.|++++..+++ +++++++.+...+. +.+++||+|+++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 4568899999999999999999998 56999999999 99999999999988 56999998888754 335789999987
Q ss_pred ccccccc-------ChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLL-------FENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+ +++.. .......++..+.++|||||+++..
T Consensus 97 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 97 L-GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp E-C-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred C-CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 4 22221 2345567789999999999998853
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=137.31 Aligned_cols=114 Identities=14% Similarity=0.068 Sum_probs=95.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
.+...+.......++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++...+ +++++++|+.+++ +.
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-~~ 112 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-TA 112 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-CS
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-CC
Confidence 4445555455667788999999999999999999865 999999999 9999999876543 5999999999987 45
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++||+|++..+.+++.....+..++..+.++|||||.++.
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 152 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 8999999987666665555667889999999999999985
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-16 Score=139.14 Aligned_cols=106 Identities=12% Similarity=-0.028 Sum_probs=85.5
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC-----------CCCcEEEEEcccccccCC
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG-----------FSNVITVLKGKIEEIELP 186 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~-----------~~~~i~~~~~d~~~~~~~ 186 (409)
...++.+|||+|||+|..+..+++.|. +|+|||+|+ |++.|+++..... ...+++++++|+.+++++
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 346788999999999999999999976 999999999 9999998764210 124599999999998865
Q ss_pred C-CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 187 V-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 ~-~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+ ++||+|++..+.+++ .......+++++.++|||||+++
T Consensus 98 ~~~~fD~v~~~~~l~~l-~~~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIAL-PADMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp HHHSEEEEEEESCGGGS-CHHHHHHHHHHHHHHSCSEEEEE
T ss_pred cCCCEEEEEECcchhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 4 789999987544433 34556788999999999999843
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=142.25 Aligned_cols=112 Identities=12% Similarity=0.124 Sum_probs=96.1
Q ss_pred HHHHhccC-CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 112 NVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 112 ~~l~~~~~-~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
+.+..... ..++.+|||||||+|.++..+++....+|+|+|+++ +++.|++++..+++.++++++.+|+.++++++++
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 185 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGA 185 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCC
Confidence 34444444 678899999999999999999996234999999999 9999999999999988899999999998887789
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
||+|++..+.+++ .+..++..+.++|||||+++.
T Consensus 186 fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~~ 219 (312)
T 3vc1_A 186 VTASWNNESTMYV----DLHDLFSEHSRFLKVGGRYVT 219 (312)
T ss_dssp EEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred EeEEEECCchhhC----CHHHHHHHHHHHcCCCcEEEE
Confidence 9999997654433 278999999999999999885
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=144.27 Aligned_cols=124 Identities=19% Similarity=0.115 Sum_probs=98.1
Q ss_pred hHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC---CcEEEEEcc
Q 015306 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS---NVITVLKGK 179 (409)
Q Consensus 104 ~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~---~~i~~~~~d 179 (409)
..+...+.+.+.......++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++....+.. .++.+..+|
T Consensus 39 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d 117 (293)
T 3thr_A 39 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 117 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred cchHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecC
Confidence 344556666666655556889999999999999999999977 999999999 999999887544322 358899999
Q ss_pred ccccc---CCCCceeEEEEe-cccccccC----hhHHHHHHHHHHhcccCCeEEEcc
Q 015306 180 IEEIE---LPVTKVDIIISE-WMGYFLLF----ENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 180 ~~~~~---~~~~~~DvVvs~-~~~~~l~~----~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+++ ++.++||+|++. .+..++.. ...+..+++.+.++|||||+++..
T Consensus 118 ~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (293)
T 3thr_A 118 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 174 (293)
T ss_dssp GGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 99887 677899999995 34333433 345889999999999999999853
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=141.14 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=94.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~DvVvs~~ 197 (409)
..++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|++++...++..+++++++|+.+.++ +.++||+|++..
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 468899999999999999999998877999999999 999999999988887789999999999877 468999999975
Q ss_pred cccc-ccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYF-LLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.++ +.+...+..++..+.++|||||.++..
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 173 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4333 245677889999999999999998853
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=141.73 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=93.7
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
...++.+|||||||+|.++..+++. |. +|+|+|+|+ +++.|++++...++.++++++.+|+.++++++++||+|++.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence 5678899999999999999999985 65 999999999 99999999999898888999999999998887899999997
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+.+ +...+..++.++.++|||||+++..
T Consensus 158 ~~l~---~~~~~~~~l~~~~~~LkpgG~l~~~ 186 (297)
T 2o57_A 158 DAFL---HSPDKLKVFQECARVLKPRGVMAIT 186 (297)
T ss_dssp SCGG---GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhh---hcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 5533 3345789999999999999999854
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=135.52 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=89.8
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCC----cEEEEEcccccccCCCCceeEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSN----VITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~~~~~~DvV 193 (409)
..++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++..+++.+ +++++.+|+...+.+.++||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 3577899999999999999999965 46999999999 9999999998877764 7999999998777666899999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++..+.+++ ....+..+++.+.++|||||.++.
T Consensus 107 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i~ 139 (219)
T 3jwg_A 107 TVIEVIEHL-DENRLQAFEKVLFEFTRPQTVIVS 139 (219)
T ss_dssp EEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred EEHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEEE
Confidence 997654444 233557899999999999997763
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-15 Score=131.26 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~DvVvs~~ 197 (409)
..++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++..+++.++++++.+|+.+. +...++||+|++++
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 467889999999999999999998878999999999 9999999999998877899999999884 33336799999986
Q ss_pred ccccccChhHHHHHHHHHH--hcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (409)
. + +......++..+. ++|+|||+++..
T Consensus 109 ~-~---~~~~~~~~~~~l~~~~~L~~gG~l~~~ 137 (177)
T 2esr_A 109 P-Y---AKETIVATIEALAAKNLLSEQVMVVCE 137 (177)
T ss_dssp S-S---HHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred C-C---CcchHHHHHHHHHhCCCcCCCcEEEEE
Confidence 4 2 1234556666665 999999998853
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=138.37 Aligned_cols=110 Identities=21% Similarity=0.321 Sum_probs=91.5
Q ss_pred cCCC-CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEE
Q 015306 118 KFLF-KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 193 (409)
Q Consensus 118 ~~~~-~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvV 193 (409)
.... ++.+|||+|||+|.+++.+++.+..+|+|+|+++ +++.|++++..+++.++++++++|+.++. ++.++||+|
T Consensus 44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I 123 (259)
T 3lpm_A 44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV 123 (259)
T ss_dssp CCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred hcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence 4455 7899999999999999999998766999999999 99999999999999888999999999876 446899999
Q ss_pred EEecccccc-----cC------------hhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFL-----LF------------ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l-----~~------------~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++++.+.. .. ...+..++..+.++|||||+++.
T Consensus 124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 998743221 00 12456789999999999999884
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=135.20 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC--CCCc-eeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL--PVTK-VDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~--~~~~-~DvVvs~ 196 (409)
++.+|||+|||+|.+++.++..|+.+|+|+|+|+ +++.|++++..+++. ++++++++|+.++.. +.++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 6789999999999999998888878999999999 999999999999984 569999999988643 2478 9999998
Q ss_pred cccccccChhHHHHHHHHH--HhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYAR--DKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~ 228 (409)
+. +. ......++..+ .++|+|||.++..
T Consensus 133 ~~-~~---~~~~~~~l~~~~~~~~LkpgG~l~i~ 162 (201)
T 2ift_A 133 PP-FH---FNLAEQAISLLCENNWLKPNALIYVE 162 (201)
T ss_dssp CC-SS---SCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CC-CC---CccHHHHHHHHHhcCccCCCcEEEEE
Confidence 75 22 35667778777 6789999998854
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=132.78 Aligned_cols=113 Identities=22% Similarity=0.331 Sum_probs=91.6
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
..+.......++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.|++++...+. +++++++|+.+++++ ++|
T Consensus 31 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~f 106 (252)
T 1wzn_A 31 EEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEF 106 (252)
T ss_dssp HHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SCE
T ss_pred HHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC-CCc
Confidence 3333333445778999999999999999999866 999999999 99999999988775 499999999998766 789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|++............+..++..+.++|+|||.++..
T Consensus 107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 99998532222334567789999999999999998854
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=130.15 Aligned_cols=103 Identities=12% Similarity=0.148 Sum_probs=87.4
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
.....++.+|||||||+|.++..+++. ..+|+|+|+++ +++.|++++..+++.++++++.+|+.+.....++||+|++
T Consensus 50 ~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~ 128 (204)
T 3njr_A 50 ALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFI 128 (204)
T ss_dssp HHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEE
T ss_pred hcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEE
Confidence 345678899999999999999999998 55999999999 9999999999999986799999999884333368999998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
... + ..+ ++..+.++|||||+++..
T Consensus 129 ~~~---~----~~~-~l~~~~~~LkpgG~lv~~ 153 (204)
T 3njr_A 129 GGG---G----SQA-LYDRLWEWLAPGTRIVAN 153 (204)
T ss_dssp CSC---C----CHH-HHHHHHHHSCTTCEEEEE
T ss_pred CCc---c----cHH-HHHHHHHhcCCCcEEEEE
Confidence 541 2 344 889999999999999854
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=135.73 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=93.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
.+...+... ..++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|+++... . .+++++.+|+.++++++
T Consensus 31 ~~~~~l~~~--~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~-~~i~~~~~d~~~~~~~~ 105 (215)
T 2pxx_A 31 SFRALLEPE--LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--V-PQLRWETMDVRKLDFPS 105 (215)
T ss_dssp HHHHHHGGG--CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--C-TTCEEEECCTTSCCSCS
T ss_pred HHHHHHHHh--cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--C-CCcEEEEcchhcCCCCC
Confidence 355555543 367889999999999999999998776999999999 99999988753 2 45999999999988777
Q ss_pred CceeEEEEeccccccc------------ChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 188 TKVDIIISEWMGYFLL------------FENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~------------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++||+|++..+..++. +......++..+.++|||||.++..
T Consensus 106 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 158 (215)
T 2pxx_A 106 ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISM 158 (215)
T ss_dssp SCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEE
Confidence 8999999976543332 2346688999999999999998853
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-15 Score=137.75 Aligned_cols=103 Identities=25% Similarity=0.263 Sum_probs=89.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEeccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMG 199 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVvs~~~~ 199 (409)
++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++++...++..+++++.+|+.+++ +++++||+|++..+.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 468999999999999999999865 999999999 99999999999888778999999999987 566899999997653
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+ +..++..++..+.++|||||+++..
T Consensus 147 ~---~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (285)
T 4htf_A 147 E---WVADPRSVLQTLWSVLRPGGVLSLM 172 (285)
T ss_dssp G---GCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred h---cccCHHHHHHHHHHHcCCCeEEEEE
Confidence 3 3356788999999999999999853
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-15 Score=135.34 Aligned_cols=106 Identities=21% Similarity=0.292 Sum_probs=92.2
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
....++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++...++. +++++.+|++++++++++||+|++.
T Consensus 17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~ 94 (239)
T 1xxl_A 17 AECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPDDSFDIITCR 94 (239)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCTTCEEEEEEE
T ss_pred hCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCCCCcEEEEEEC
Confidence 4467889999999999999999999865 999999999 999999999888875 4999999999988877899999997
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+. .+..++..++..+.++|||||+++..
T Consensus 95 ~~l---~~~~~~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 95 YAA---HHFSDVRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp SCG---GGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred Cch---hhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 543 33356788999999999999998853
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=127.48 Aligned_cols=105 Identities=20% Similarity=0.237 Sum_probs=90.0
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
...++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++++..+++++ ++++.+|+.++++ .++||+|++..
T Consensus 29 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~~~~D~v~~~~ 105 (199)
T 2xvm_A 29 KVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLTF-DRQYDFILSTV 105 (199)
T ss_dssp TTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGGCCC-CCCEEEEEEES
T ss_pred hccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhhCCC-CCCceEEEEcc
Confidence 345778999999999999999999865 999999999 9999999998888754 9999999999877 58999999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+++. ......++..+.++|||||.++.
T Consensus 106 ~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~ 134 (199)
T 2xvm_A 106 VLMFLE-AKTIPGLIANMQRCTKPGGYNLI 134 (199)
T ss_dssp CGGGSC-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hhhhCC-HHHHHHHHHHHHHhcCCCeEEEE
Confidence 544442 34678899999999999999763
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.1e-15 Score=136.92 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=98.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
.+...+.......++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++...+++ +++++.+|+.+++++
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPFE 102 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCSC
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCCC
Confidence 445555555666789999999999999999999964 56999999999 999999999998886 499999999999888
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++||+|++..+.+ +..++..++..+.++|||||+++..
T Consensus 103 ~~~fD~v~~~~~l~---~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (276)
T 3mgg_A 103 DSSFDHIFVCFVLE---HLQSPEEALKSLKKVLKPGGTITVI 141 (276)
T ss_dssp TTCEEEEEEESCGG---GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCeeEEEEechhh---hcCCHHHHHHHHHHHcCCCcEEEEE
Confidence 89999999976533 3356678999999999999998854
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.6e-15 Score=134.82 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=94.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
+...+.......++.+|||||||+|.++..+++.+..+|+++|+|+ +++.|++++... .+++++++|+.+++++.+
T Consensus 81 ~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~ 157 (254)
T 1xtp_A 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPN 157 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSS
T ss_pred HHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCC
Confidence 3344444455667899999999999999999997777899999999 999999987654 469999999999888778
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+||+|++..+.+++. ...+..++..+.++|||||+++..
T Consensus 158 ~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~ 196 (254)
T 1xtp_A 158 TYDLIVIQWTAIYLT-DADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp CEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999999976544332 256789999999999999998864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-15 Score=135.74 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~DvVvs~ 196 (409)
..++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|+++....+ .+++++++|+.++ ++++++||+|+++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence 357889999999999999999887666999999999 9999999887766 4699999999998 7777899999993
Q ss_pred -ccc-ccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 197 -WMG-YFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 197 -~~~-~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
... ....+......++.++.++|||||+++...
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 211 112233455678999999999999998543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=141.79 Aligned_cols=120 Identities=11% Similarity=0.101 Sum_probs=99.5
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHH--HcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA--KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la--~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
...+.+.+. ....++.+|||||||+|.++..++ ..+..+|+|+|+|+ +++.|++++...++.++++++++|+.++
T Consensus 105 ~~~~~~~l~--~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (305)
T 3ocj_A 105 HGHFRRALQ--RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL 182 (305)
T ss_dssp HHHHHHHHH--HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC
T ss_pred HHHHHHHHH--hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC
Confidence 333555553 345788999999999999999985 35566999999999 9999999999999888899999999999
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+++ ++||+|++..+.+++........++..+.++|||||+++...
T Consensus 183 ~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 183 DTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp CCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred Ccc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 887 999999997665555555555568999999999999998643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=135.16 Aligned_cols=115 Identities=21% Similarity=0.189 Sum_probs=95.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
...+.+.......++.+|||||||+|.++..+++ .|. +|+|+|+|+ +++.|++++...++.++++++.+|+.+++
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-- 127 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-- 127 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--
Confidence 3445555556677889999999999999999995 666 999999999 99999999998888778999999998764
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++||+|++..+.+++. ...+..++..+.++|||||.++..
T Consensus 128 -~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 167 (287)
T 1kpg_A 128 -EPVDRIVSIGAFEHFG-HERYDAFFSLAHRLLPADGVMLLH 167 (287)
T ss_dssp -CCCSEEEEESCGGGTC-TTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred -CCeeEEEEeCchhhcC-hHHHHHHHHHHHHhcCCCCEEEEE
Confidence 8899999976543332 156788999999999999999854
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-15 Score=133.02 Aligned_cols=107 Identities=25% Similarity=0.230 Sum_probs=92.6
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.|++++...+++ +++++.+|+.++++++++||+|+
T Consensus 33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~ 111 (219)
T 3dh0_A 33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTVDFIF 111 (219)
T ss_dssp HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCEEEEE
T ss_pred hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCeeEEE
Confidence 345778899999999999999999964 46999999999 999999999988886 59999999999888878999999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+..+.+ +..+...+++.+.++|||||.++..
T Consensus 112 ~~~~l~---~~~~~~~~l~~~~~~LkpgG~l~i~ 142 (219)
T 3dh0_A 112 MAFTFH---ELSEPLKFLEELKRVAKPFAYLAII 142 (219)
T ss_dssp EESCGG---GCSSHHHHHHHHHHHEEEEEEEEEE
T ss_pred eehhhh---hcCCHHHHHHHHHHHhCCCeEEEEE
Confidence 976533 3356788999999999999998853
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=129.00 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=90.4
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 194 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVv 194 (409)
...++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++..+++.++++++++|+.++. ..+++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 3567899999999999999999995 456999999999 99999999999998778999999998875 4458999999
Q ss_pred Eeccc------ccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMG------YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~------~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++.. ...........++..+.++|||||+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~ 137 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV 137 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEE
Confidence 97521 0122233556789999999999999884
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-15 Score=136.31 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~ 197 (409)
.+|.+|||||||+|..+..+++.+..+|++||+|+ +++.|+++....+. ++.++.+|+.++. +++++||.|+.+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccccccCCceEEEee
Confidence 67899999999999999999987656999999999 99999999887664 5899999988763 5678999999864
Q ss_pred c--cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 M--GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~--~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+ ...+.+..+.+.+++++.|+|||||++++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 3 234456667889999999999999999854
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=128.41 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=90.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
.+.......++.+|||+|||+|.++..+++.+ ..+|+++|+|+ +++.|++++..+++ ++++++.+|+.+.....++|
T Consensus 31 ~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCCCC
Confidence 34444566788999999999999999999975 57999999999 99999999999888 56999999997654444789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|++.... ..+..++..+.++|||||+++..
T Consensus 110 D~i~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 110 DRVFIGGSG------GMLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp SEEEESCCT------TCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CEEEECCCC------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 999986532 25678899999999999999853
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=136.71 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=93.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEcccccccC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~ 185 (409)
+.+.|.... ..++.+|||||||+|.++..+++ .+..+|+|+|+|+ +++.|++++... +...+++++++|++++++
T Consensus 25 ~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~ 103 (299)
T 3g5t_A 25 FYKMIDEYH-DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKF 103 (299)
T ss_dssp HHHHHHHHC-CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGG
T ss_pred HHHHHHHHh-cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCc
Confidence 334444322 35789999999999999999997 3577999999999 999999999887 445679999999999887
Q ss_pred CC------CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PV------TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~------~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+. ++||+|++..+.+++ ++..++..+.++|||||.++.
T Consensus 104 ~~~~~~~~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 104 LGADSVDKQKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp GCTTTTTSSCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccCCCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 76 799999997654433 678999999999999999885
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-14 Score=128.95 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=95.4
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
.+.+.+.+.... .++.+|||||||+|.++..+++.+. +|+++|+|+ +++.|+++...++ .+++++.+|+.++++
T Consensus 25 ~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~ 99 (227)
T 1ve3_A 25 IETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSF 99 (227)
T ss_dssp HHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCS
T ss_pred HHHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCC
Confidence 445555565433 4588999999999999999999866 999999999 9999999998876 459999999999887
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.++||+|++..+.. +.+...+..++..+.++|+|||.++..
T Consensus 100 ~~~~~D~v~~~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~~~ 141 (227)
T 1ve3_A 100 EDKTFDYVIFIDSIV-HFEPLELNQVFKEVRRVLKPSGKFIMY 141 (227)
T ss_dssp CTTCEEEEEEESCGG-GCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcEEEEEEcCchH-hCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 778999999976422 344567788999999999999998743
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-15 Score=134.15 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=89.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec-c
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW-M 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~-~ 198 (409)
.++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++....+. +++++++|+.+++++ ++||+|++.. +
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~fD~v~~~~~~ 111 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDS 111 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc-CCceEEEEcCcc
Confidence 3778999999999999999999865 899999999 99999999988765 589999999998877 8999999965 5
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+++.....+..++..+.++|||||.++.
T Consensus 112 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 44454446788999999999999999885
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-15 Score=136.22 Aligned_cols=115 Identities=26% Similarity=0.297 Sum_probs=94.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
..+.+.......++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.... .+++++.+|+.+++++++
T Consensus 43 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~ 119 (266)
T 3ujc_A 43 ATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPEN 119 (266)
T ss_dssp HHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCTT
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCCC
Confidence 3445555566778899999999999999999995344999999999 999999876544 469999999999988779
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+||+|++..+.+++ ...++..++..+.++|||||.++..
T Consensus 120 ~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (266)
T 3ujc_A 120 NFDLIYSRDAILAL-SLENKNKLFQKCYKWLKPTGTLLIT 158 (266)
T ss_dssp CEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEeHHHHHHhc-ChHHHHHHHHHHHHHcCCCCEEEEE
Confidence 99999997553333 1267889999999999999999854
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-15 Score=138.93 Aligned_cols=104 Identities=19% Similarity=0.118 Sum_probs=84.1
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
+.+.|.... ..+.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|++. .+++++++++++++++++
T Consensus 29 l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~~ 98 (257)
T 4hg2_A 29 LFRWLGEVA--PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPPA 98 (257)
T ss_dssp HHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCSS
T ss_pred HHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccCC
Confidence 334444332 3457999999999999999999865 999999999 99877542 359999999999999989
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+||+|++....+++ ..+.++.++.|+|||||+++.
T Consensus 99 sfD~v~~~~~~h~~----~~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 99 SVDVAIAAQAMHWF----DLDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp CEEEEEECSCCTTC----CHHHHHHHHHHHEEEEEEEEE
T ss_pred cccEEEEeeehhHh----hHHHHHHHHHHHcCCCCEEEE
Confidence 99999996543322 467889999999999999874
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=130.83 Aligned_cols=104 Identities=23% Similarity=0.291 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||||||+|.++..+++.. ..+|+|+|+|+ +++.|++++...+ +++++++|+.+++++ ++||+|++..
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~-~~fD~v~~~~ 117 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE-EKYDMVVSAL 117 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC-SCEEEEEEES
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC-CCceEEEEeC
Confidence 5678899999999999999999963 56999999999 9999999876554 699999999998887 8999999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+++ .......+++.+.++|||||.++..
T Consensus 118 ~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 147 (234)
T 3dtn_A 118 SIHHL-EDEDKKELYKRSYSILKESGIFINA 147 (234)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccC-CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 54444 2233446899999999999999853
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.6e-15 Score=131.43 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=84.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEEEeccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEWMG 199 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~DvVvs~~~~ 199 (409)
++.+|||+|||+|.+++.+++.|+.+|+|+|+|+ +++.|++++..+++ ++++++++|+.+. +...++||+|++++.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p- 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP- 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCC-
Confidence 6789999999999999998888877999999999 99999999999988 5699999999884 444578999999865
Q ss_pred ccccChhHHHHHHHHHHh--cccCCeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDK--WLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~--~LkpgG~lip~ 228 (409)
+. ......++..+.+ +|+|||+++..
T Consensus 132 ~~---~~~~~~~l~~l~~~~~L~pgG~l~i~ 159 (202)
T 2fpo_A 132 FR---RGLLEETINLLEDNGWLADEALIYVE 159 (202)
T ss_dssp SS---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CC---CCcHHHHHHHHHhcCccCCCcEEEEE
Confidence 22 2455566666654 69999998854
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-15 Score=141.96 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=86.2
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC----------------------------
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF---------------------------- 169 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~---------------------------- 169 (409)
...++.+|||||||+|.++..++..|+.+|+|+|+|+ |++.|++++..+..
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 4567889999999999998888888877899999999 99999987755321
Q ss_pred CCcEE-EEEcccccc-cC---CCCceeEEEEecccccc-cChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 170 SNVIT-VLKGKIEEI-EL---PVTKVDIIISEWMGYFL-LFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 170 ~~~i~-~~~~d~~~~-~~---~~~~~DvVvs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+++ ++++|+.+. ++ ..++||+|++..+.+++ .+...+..++..+.++|||||.++..
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 11244 899999884 22 24789999998665443 33356778999999999999999865
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=132.18 Aligned_cols=116 Identities=21% Similarity=0.249 Sum_probs=93.1
Q ss_pred HHHHHHHHHh-ccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015306 107 TKSYQNVIYQ-NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (409)
Q Consensus 107 ~~~~~~~l~~-~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (409)
...+.+.+.. .....++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++ . +...+++++.+|+.+++
T Consensus 23 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~ 99 (263)
T 2yqz_A 23 AGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIP 99 (263)
T ss_dssp HHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCC
T ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCC
Confidence 3344444432 23557789999999999999999999854 999999999 999999987 2 33356999999999988
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++++||+|++..+ +++..+...++..+.++|||||.++..
T Consensus 100 ~~~~~fD~v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 100 LPDESVHGVIVVHL---WHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp SCTTCEEEEEEESC---GGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCeeEEEECCc---hhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 87789999999655 334356788999999999999998854
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-15 Score=135.80 Aligned_cols=99 Identities=20% Similarity=0.205 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~DvVvs 195 (409)
.++.+|||||||+|.+++.+++ .+..+|+|+|+|+ +++.|++++..+++.+ ++++++|+.++.++ .++||+|++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhcccccccCCccEEEE
Confidence 4678999999999999999997 4556999999999 9999999999999865 99999999988753 478999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+ ..+..++..+.++|||||.++.
T Consensus 148 ~~~-------~~~~~~l~~~~~~LkpgG~l~~ 172 (240)
T 1xdz_A 148 RAV-------ARLSVLSELCLPLVKKNGLFVA 172 (240)
T ss_dssp ECC-------SCHHHHHHHHGGGEEEEEEEEE
T ss_pred ecc-------CCHHHHHHHHHHhcCCCCEEEE
Confidence 653 3577899999999999999875
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-14 Score=132.95 Aligned_cols=102 Identities=14% Similarity=0.256 Sum_probs=86.6
Q ss_pred cCCCCCCEEEEEcCCCChHH-HHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILS-LFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~-~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
..+.++.+|||||||+|.++ +.+++....+|+|+|+|+ +++.|++++...++ ++++++++|+.+++ +++||+|++
T Consensus 118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~~ 194 (298)
T 3fpf_A 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLMV 194 (298)
T ss_dssp TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEEE
T ss_pred cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEEE
Confidence 56789999999999998654 667774455999999999 99999999999898 78999999999875 589999997
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
... ......+++++.++|||||+++..
T Consensus 195 ~a~------~~d~~~~l~el~r~LkPGG~Lvv~ 221 (298)
T 3fpf_A 195 AAL------AEPKRRVFRNIHRYVDTETRIIYR 221 (298)
T ss_dssp CTT------CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCC------ccCHHHHHHHHHHHcCCCcEEEEE
Confidence 532 256778999999999999999853
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=131.00 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=92.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC----CCcEEEEEcccccccCCCCceeEEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
..++.+|||||||+|.++..+++.|. +|+|+|+++ +++.|++++...++ .++++++.+|+.+++++.++||+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 35788999999999999999999866 999999999 99999999887776 2468999999999888778999999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+..+.+++........+++.+.++|||||.++..
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLV 140 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 9766555544445558999999999999998853
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.4e-15 Score=128.35 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=86.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----CCCceeEEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIII 194 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~DvVv 194 (409)
..++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.|++++..+++.++++++++|+.+... ..++||+|+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 357889999999999999999998878999999999 999999999999887789999999988432 247899999
Q ss_pred EecccccccChhHHHHHHHHH--HhcccCCeEEEcc
Q 015306 195 SEWMGYFLLFENMLNTVLYAR--DKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~ 228 (409)
++++ +.. .....++..+ .++|+|||+++..
T Consensus 122 ~~~~-~~~---~~~~~~~~~l~~~~~L~~gG~l~~~ 153 (187)
T 2fhp_A 122 LDPP-YAK---QEIVSQLEKMLERQLLTNEAVIVCE 153 (187)
T ss_dssp ECCC-GGG---CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ECCC-CCc---hhHHHHHHHHHHhcccCCCCEEEEE
Confidence 9865 221 2344555555 7899999998853
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=132.89 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=89.8
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
+.......++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|+++... .+++++.+|+.+++++.++||+
T Consensus 35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceE
Confidence 333345568899999999999999999998776999999999 99999887543 3599999999998877789999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|++..+ +.+...+..+++.+.++|+|||.++..
T Consensus 111 v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~~~ 143 (243)
T 3bkw_A 111 AYSSLA---LHYVEDVARLFRTVHQALSPGGHFVFS 143 (243)
T ss_dssp EEEESC---GGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecc---ccccchHHHHHHHHHHhcCcCcEEEEE
Confidence 999654 333356789999999999999998854
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-14 Score=134.83 Aligned_cols=115 Identities=16% Similarity=0.090 Sum_probs=96.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
...+.+.......++.+|||||||+|.++..+++. |. +|+|+|+|+ +++.|++++...++.++++++.+|+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 153 (318)
T 2fk8_A 77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-- 153 (318)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--
Confidence 34455555566778899999999999999999986 66 999999999 99999999999888888999999998874
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++||+|++..+.+++. ...+..++..+.++|||||.++..
T Consensus 154 -~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 193 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHFG-HENYDDFFKRCFNIMPADGRMTVQ 193 (318)
T ss_dssp -CCCSEEEEESCGGGTC-GGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred -CCcCEEEEeChHHhcC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 7899999976533332 256789999999999999999853
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.3e-15 Score=138.21 Aligned_cols=101 Identities=20% Similarity=0.152 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||+|||+|.+++.+++.|+.+|+|+|+|+ +++.|++++..+++.++++++++|+.++.. .++||+|+++++
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 357899999999999999999998876899999999 999999999999998889999999999876 589999999764
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
. ....++..+.++|||||+++..
T Consensus 202 ~-------~~~~~l~~~~~~LkpgG~l~~~ 224 (278)
T 2frn_A 202 V-------RTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp S-------SGGGGHHHHHHHEEEEEEEEEE
T ss_pred h-------hHHHHHHHHHHHCCCCeEEEEE
Confidence 2 1245677788999999999853
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.7e-15 Score=138.63 Aligned_cols=108 Identities=18% Similarity=0.259 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCC----------------------------
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS---------------------------- 170 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~---------------------------- 170 (409)
.++++|||||||+|.+++.+++. +..+|+|+|+|+ +++.|++++...+..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 47899999999999999999994 667999999999 999999987654422
Q ss_pred -----------------------------CcEEEEEccccccc-----CCCCceeEEEEeccccccc---ChhHHHHHHH
Q 015306 171 -----------------------------NVITVLKGKIEEIE-----LPVTKVDIIISEWMGYFLL---FENMLNTVLY 213 (409)
Q Consensus 171 -----------------------------~~i~~~~~d~~~~~-----~~~~~~DvVvs~~~~~~l~---~~~~~~~~l~ 213 (409)
++|+++++|+.... +..++||+|+|..+..+++ ....+..+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 57999999998654 3468999999976543333 4457789999
Q ss_pred HHHhcccCCeEEEcc
Q 015306 214 ARDKWLVDDGIVLPD 228 (409)
Q Consensus 214 ~~~~~LkpgG~lip~ 228 (409)
.+.++|+|||+++..
T Consensus 205 ~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 205 RIYRHLRPGGILVLE 219 (292)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHHhCCCcEEEEe
Confidence 999999999999853
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=134.52 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.|++++..+++ +++++.+|+.++.+ .++||+|++..+.
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~i~~~~~~ 194 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-QENYDFIVSTVVF 194 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-CSCEEEEEECSSG
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-cCCccEEEEccch
Confidence 4788999999999999999999977 999999999 99999999999887 59999999999877 5899999998765
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++ .......++..+.++|+|||.++.
T Consensus 195 ~~~-~~~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 195 MFL-NRERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp GGS-CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 544 345677899999999999999763
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=133.07 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~DvVvs 195 (409)
.++.+|||||||+|.+++.++.. +..+|+++|+|+ +++.|++++..+++.+ ++++++|++++... .++||+|++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEEEE
Confidence 56789999999999999999984 677999999999 9999999999999976 99999999998643 378999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+ ..+..++..+.++|||||+++.
T Consensus 158 ~a~-------~~~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 158 RAV-------APLCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp ESS-------CCHHHHHHHHGGGEEEEEEEEE
T ss_pred CCc-------CCHHHHHHHHHHHcCCCeEEEE
Confidence 754 3457889999999999999874
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=130.26 Aligned_cols=113 Identities=23% Similarity=0.312 Sum_probs=93.2
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
..+.+.+... ..++.+|||||||+|.++..+++. .+|+|+|+|+ +++.|+++....+ .+++++.+|+.+++++
T Consensus 21 ~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~ 94 (243)
T 3d2l_A 21 PEWVAWVLEQ--VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP 94 (243)
T ss_dssp HHHHHHHHHH--SCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS
T ss_pred HHHHHHHHHH--cCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC
Confidence 3455555543 356789999999999999999887 6999999999 9999999988776 3589999999998776
Q ss_pred CCceeEEEEec-ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++||+|++.. +.+++.....+..+++.+.++|||||.++.
T Consensus 95 -~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 95 -EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp -SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 8999999864 444454556788899999999999999885
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.1e-15 Score=133.99 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=86.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||||||+|.++..+++.|. +|+|+|+++ +++.|+++. ...+++++.+|+.++++++++||+|++..+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 125 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINS 125 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcCh
Confidence 35788999999999999999999866 999999999 999998764 225699999999999887799999999654
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+..++..++..+.++|+|||+++..
T Consensus 126 ---l~~~~~~~~~l~~~~~~L~pgG~l~i~ 152 (242)
T 3l8d_A 126 ---LEWTEEPLRALNEIKRVLKSDGYACIA 152 (242)
T ss_dssp ---TTSSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---HhhccCHHHHHHHHHHHhCCCeEEEEE
Confidence 444467788999999999999998854
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=137.91 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=86.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC--CcEEEEEcccccccCCCCceeEEEEecc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++++...++. .+++++++|+.+++++ ++||+|++...
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 159 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD-KRFGTVVISSG 159 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCS-CCEEEEEECHH
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcC-CCcCEEEECCc
Confidence 344999999999999999999865 899999999 999999999876642 5699999999998874 89999997422
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
............+++.+.++|||||+++..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 222333446789999999999999999853
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-14 Score=123.48 Aligned_cols=111 Identities=21% Similarity=0.277 Sum_probs=91.2
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcccccccCCCCcee
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D 191 (409)
+.......++.+|||+|||+|.++..+++. ..+|+|+|+++ +++.|++++..+++.+ +++++.+|+.+. ++.++||
T Consensus 44 l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D 121 (194)
T 1dus_A 44 LVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VKDRKYN 121 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CTTSCEE
T ss_pred HHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-cccCCce
Confidence 333344568889999999999999999998 55999999999 9999999999988865 599999999874 3457899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|+++++.+ ........++..+.++|+|||.++..
T Consensus 122 ~v~~~~~~~--~~~~~~~~~l~~~~~~L~~gG~l~~~ 156 (194)
T 1dus_A 122 KIITNPPIR--AGKEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp EEEECCCST--TCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCcc--cchhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999976422 12456778999999999999998843
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=139.11 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=90.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHH-------HHcCCC-CcEEEEEcccc
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIV-------EANGFS-NVITVLKGKIE 181 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~-------~~~~~~-~~i~~~~~d~~ 181 (409)
..+.....+.++.+|||||||+|.+++.+|. .|+.+|+|||+++ +++.|+++. ..+|+. ++|+|+++|+.
T Consensus 163 ~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~ 242 (438)
T 3uwp_A 163 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 242 (438)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTT
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECccc
Confidence 3344445678999999999999999999987 6777899999999 999998764 345653 67999999999
Q ss_pred cccCCC--CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 182 EIELPV--TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 182 ~~~~~~--~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++++++ ..||+|+++.+ ++ .+.+...+.++.+.|||||+||..
T Consensus 243 ~lp~~d~~~~aDVVf~Nn~---~F-~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 243 SEEWRERIANTSVIFVNNF---AF-GPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp SHHHHHHHHTCSEEEECCT---TC-CHHHHHHHHHHHTTSCTTCEEEES
T ss_pred CCccccccCCccEEEEccc---cc-CchHHHHHHHHHHcCCCCcEEEEe
Confidence 987643 47999999754 22 356677778889999999999854
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=137.39 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-----cEEEEEccc------cccc--CCC
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKI------EEIE--LPV 187 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~------~~~~--~~~ 187 (409)
++.+|||||||+|..+..+++.+..+|+|+|+|+ |++.|+++....+... .+++.+.|+ .++. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 5789999999999876666676666999999999 9999999887665421 267888888 3332 445
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++||+|+|..+.+++........+++++.++|||||+++..
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~ 168 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLIT 168 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 79999999755443333335579999999999999999854
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=124.94 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=86.6
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-ccCCCC
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IELPVT 188 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~ 188 (409)
..+.......++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..+++.+++ ++.+|..+ ++...+
T Consensus 15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 33444445678889999999999999999985 466999999999 999999999999987678 88888855 222227
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+||+|++... +.+ ..+++.+.++|||||+++..
T Consensus 94 ~~D~i~~~~~---~~~----~~~l~~~~~~L~~gG~l~~~ 126 (178)
T 3hm2_A 94 NPDVIFIGGG---LTA----PGVFAAAWKRLPVGGRLVAN 126 (178)
T ss_dssp CCSEEEECC----TTC----TTHHHHHHHTCCTTCEEEEE
T ss_pred CCCEEEECCc---ccH----HHHHHHHHHhcCCCCEEEEE
Confidence 8999998643 322 56788889999999998853
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=133.06 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=84.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++... +++++++|+.++ +++++||+|++..+
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~~~~~fD~v~~~~~ 112 (250)
T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-QLPRRYDNIVLTHV 112 (250)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-CCSSCEEEEEEESC
T ss_pred hcCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-CcCCcccEEEEhhH
Confidence 35778999999999999999999866 899999999 99999987542 599999999988 45589999999765
Q ss_pred cccccChhHHHHHHHHHH-hcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARD-KWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~-~~LkpgG~lip~ 228 (409)
+.+..++..+++++. ++|||||+++..
T Consensus 113 ---l~~~~~~~~~l~~~~~~~LkpgG~l~i~ 140 (250)
T 2p7i_A 113 ---LEHIDDPVALLKRINDDWLAEGGRLFLV 140 (250)
T ss_dssp ---GGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ---HHhhcCHHHHHHHHHHHhcCCCCEEEEE
Confidence 444456789999999 999999998853
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=132.29 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=88.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
++.+|||||||+|.++..+++.+..+|+++|+|+ +++.|++++...+ ..+++++.+|+.+++++.++||+|++..+.+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 6889999999999999999987777999999999 9999999987664 2469999999999887767999999976544
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++. ...+..++..+.++|||||+++..
T Consensus 158 ~~~-~~~~~~~l~~~~~~LkpgG~l~i~ 184 (241)
T 2ex4_A 158 HLT-DQHLAEFLRRCKGSLRPNGIIVIK 184 (241)
T ss_dssp GSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hCC-HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 332 233568999999999999998853
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=127.76 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=85.9
Q ss_pred CCCCCEEEEEcCCCChHH-HHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILS-LFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~-~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||+|||+|.++ ..+++.|. +|+|+|+|+ +++.|++++...+ .+++++++|+.++++++++||+|++..
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~ 97 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYG 97 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECS
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcC
Confidence 457889999999999874 44455554 999999999 9999999988766 348999999999888778999999965
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+++ ....+..++..+.++|||||.++..
T Consensus 98 ~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 127 (209)
T 2p8j_A 98 TIFHM-RKNDVKEAIDEIKRVLKPGGLACIN 127 (209)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHhC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 43433 2367889999999999999999854
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-14 Score=127.53 Aligned_cols=118 Identities=12% Similarity=0.162 Sum_probs=93.8
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEccccc
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEE 182 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~ 182 (409)
...+...+.......++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|++++...++. ++++++.+|+.+
T Consensus 41 ~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~ 120 (221)
T 3dr5_A 41 TGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD 120 (221)
T ss_dssp HHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHH
Confidence 3345555554443344559999999999999999994 3 56999999999 999999999999998 789999999987
Q ss_pred cc--CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 183 IE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 183 ~~--~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
.. ++.++||+|+++.. ......+++.+.++|||||+++....
T Consensus 121 ~l~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 121 VMSRLANDSYQLVFGQVS------PMDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp HGGGSCTTCEEEEEECCC------TTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred HHHHhcCCCcCeEEEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 63 33589999998642 23456788999999999999997543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=133.84 Aligned_cols=109 Identities=25% Similarity=0.234 Sum_probs=89.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHH---cCCCCcEEEEEccccccc-------C
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEA---NGFSNVITVLKGKIEEIE-------L 185 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~---~~~~~~i~~~~~d~~~~~-------~ 185 (409)
....++.+|||+|||+|.+++.+++.. ..+|+|+|+++ +++.|++++.. +++.++++++++|+.+.. +
T Consensus 32 ~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL 111 (260)
T ss_dssp CCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC
T ss_pred hcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc
Confidence 445678899999999999999999964 56999999999 99999999998 888888999999998872 4
Q ss_pred CCCceeEEEEeccccccc----------------ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYFLL----------------FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~----------------~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.++||+|++++. |+.. ....+..+++.+.++|||||+++.
T Consensus 112 ~~~~fD~Vv~nPP-y~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 112 PDEHFHHVIMNPP-YNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp CTTCEEEEEECCC-C---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCcCEEEECCC-CcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 4578999999864 2221 112367889999999999999874
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-14 Score=125.21 Aligned_cols=101 Identities=21% Similarity=0.251 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++ +|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++....+. +++++.+|+.+++++.++||+|++...
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~- 103 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIFC- 103 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEECC-
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEEhh-
Confidence 456 999999999999999999866 999999999 99999999988776 599999999998877789999998532
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.........++..+.++|||||.++..
T Consensus 104 --~~~~~~~~~~l~~~~~~L~pgG~l~~~ 130 (202)
T 2kw5_A 104 --HLPSSLRQQLYPKVYQGLKPGGVFILE 130 (202)
T ss_dssp --CCCHHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred --cCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 224567889999999999999998853
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-14 Score=127.25 Aligned_cols=107 Identities=24% Similarity=0.238 Sum_probs=86.6
Q ss_pred CCCCCCEEEEEcCC-CChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEE
Q 015306 119 FLFKDKVVLDVGAG-TGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIIS 195 (409)
Q Consensus 119 ~~~~~~~VLDlGcG-~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVvs 195 (409)
...++.+|||+||| +|.++..+++.+..+|+|+|+++ +++.|++++..+++ +++++++|+..+. +++++||+|++
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEE
Confidence 35688999999999 99999999997455999999999 99999999999988 5999999975442 44589999999
Q ss_pred ecccccc----------------cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFL----------------LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l----------------~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++..+.. .....+..+++.+.++|||||+++.
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 177 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVAL 177 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEE
Confidence 8642211 1112347889999999999999874
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-14 Score=131.87 Aligned_cols=106 Identities=22% Similarity=0.249 Sum_probs=90.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+|||||||+|.++..+++. + ..+|+|+|+|+ +++.|++++...+. +++++.+|+.+++++ ++||+|+
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~v~ 94 (284)
T 3gu3_A 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN-DKYDIAI 94 (284)
T ss_dssp SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS-SCEEEEE
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCcC-CCeeEEE
Confidence 35578899999999999999999985 3 36999999999 99999999887664 699999999998875 7999999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+..+ +.+..+...++..+.++|||||+++...
T Consensus 95 ~~~~---l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 126 (284)
T 3gu3_A 95 CHAF---LLHMTTPETMLQKMIHSVKKGGKIICFE 126 (284)
T ss_dssp EESC---GGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCh---hhcCCCHHHHHHHHHHHcCCCCEEEEEe
Confidence 9765 3344567899999999999999998543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=130.03 Aligned_cols=103 Identities=15% Similarity=0.070 Sum_probs=87.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++++...+...+++++.+|+.++... ++||+|++..+.+
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT-ELFDLIFDYVFFC 143 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS-SCEEEEEEESSTT
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC-CCeeEEEEChhhh
Confidence 445999999999999999988655 899999999 9999999988766667799999999997744 7999999976544
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++. ......++..+.++|||||.++.
T Consensus 144 ~~~-~~~~~~~l~~~~~~LkpgG~l~~ 169 (235)
T 3lcc_A 144 AIE-PEMRPAWAKSMYELLKPDGELIT 169 (235)
T ss_dssp TSC-GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHHHCCCCcEEEE
Confidence 442 34778999999999999999885
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-14 Score=126.47 Aligned_cols=103 Identities=20% Similarity=0.167 Sum_probs=88.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||||||+|.+++.+++.| +.+|+|+|+++ +++.|++++..+++.++|+++.+|..+...+.++||+|+...
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 4678899999999999999999976 66899999999 999999999999999999999999988765534799988644
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+. ..+..++......|+++|.+|.
T Consensus 99 mGg-----~lI~~IL~~~~~~l~~~~~lIl 123 (230)
T 3lec_A 99 MGG-----RLIADILNNDIDKLQHVKTLVL 123 (230)
T ss_dssp ECH-----HHHHHHHHHTGGGGTTCCEEEE
T ss_pred Cch-----HHHHHHHHHHHHHhCcCCEEEE
Confidence 421 4567888888899999999883
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=131.79 Aligned_cols=100 Identities=21% Similarity=0.225 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec-c
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW-M 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~-~ 198 (409)
.++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++.. +++++++|+.++++ +++||+|++.. +
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-~~~fD~v~~~~~~ 120 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-GRRFSAVTCMFSS 120 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-SCCEEEEEECTTG
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-cCCcCEEEEcCch
Confidence 4678999999999999999999865 899999999 9999998753 48999999999887 48999999975 5
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..++.....+..++..+.++|||||.++..
T Consensus 121 l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 121 IGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp GGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 455544567788999999999999999864
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-14 Score=126.20 Aligned_cols=95 Identities=22% Similarity=0.239 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
++.+|||||||+|.++..+ +..+|+|+|+|+ +++.|+++. .+++++++|+.++++++++||+|++..+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~-- 104 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDVVLLFTT-- 104 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEEEEEESC--
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEEEEEcCh--
Confidence 7889999999999998877 555999999999 999998876 3489999999998887789999999654
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+..++..++..+.++|||||.++..
T Consensus 105 -l~~~~~~~~~l~~~~~~L~pgG~l~i~ 131 (211)
T 2gs9_A 105 -LEFVEDVERVLLEARRVLRPGGALVVG 131 (211)
T ss_dssp -TTTCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred -hhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 444457789999999999999998853
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-14 Score=128.46 Aligned_cols=98 Identities=27% Similarity=0.326 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||||||+|.++..+++.+. +|+|+|+++ +++.|++++. .+++++.+|+.+++++ ++||+|++..+.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l 116 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-TSIDTIVSTYAF 116 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC-SCCSEEEEESCG
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC-CCeEEEEECcch
Confidence 4788999999999999999999865 999999999 9999998764 3589999999999887 999999997654
Q ss_pred ccccChhHHH--HHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFENMLN--TVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~--~~l~~~~~~LkpgG~lip~ 228 (409)
+++ .... .++..+.++|||||.++..
T Consensus 117 ~~~---~~~~~~~~l~~~~~~LkpgG~l~i~ 144 (220)
T 3hnr_A 117 HHL---TDDEKNVAIAKYSQLLNKGGKIVFA 144 (220)
T ss_dssp GGS---CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hcC---ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 433 3443 4899999999999999854
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.7e-14 Score=126.68 Aligned_cols=103 Identities=22% Similarity=0.273 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||||||+|.+++.+++.| +.+|+|+|+++ +++.|++++..+++.++|+++.+|..+...+..+||+|+...
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 4678899999999999999999976 66899999999 999999999999999899999999988765534699988644
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++ -..+..++......|+++|++|.
T Consensus 99 mG-----g~lI~~IL~~~~~~L~~~~~lIl 123 (244)
T 3gnl_A 99 MG-----GTLIRTILEEGAAKLAGVTKLIL 123 (244)
T ss_dssp EC-----HHHHHHHHHHTGGGGTTCCEEEE
T ss_pred Cc-----hHHHHHHHHHHHHHhCCCCEEEE
Confidence 42 14567888888899999999883
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=124.32 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~ 196 (409)
.++.+|||||||+|.++..+++. +..+|+|+|+++ +++.|++++..+++ ++++++++|+.+++ ++.++||+|+++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 46789999999999999999985 456999999999 99999999999888 46999999999876 666889999997
Q ss_pred ccccccc--Ch---hHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLL--FE---NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~--~~---~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
....... ++ .....++..+.++|+|||.++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence 5422111 00 02357889999999999998753
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-14 Score=124.12 Aligned_cols=108 Identities=28% Similarity=0.341 Sum_probs=90.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
...+.+... ..++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++..+++.+ ++++.+|+.+.. .
T Consensus 49 ~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--~ 123 (205)
T 3grz_A 49 LAMLGIERA--MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV--D 123 (205)
T ss_dssp HHHHHHHHH--CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC--C
T ss_pred HHHHHHHHh--ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC--C
Confidence 344444432 357889999999999999999998888999999999 9999999999999876 999999997753 4
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++||+|+++.+. ..+..++..+.++|+|||+++.
T Consensus 124 ~~fD~i~~~~~~------~~~~~~l~~~~~~L~~gG~l~~ 157 (205)
T 3grz_A 124 GKFDLIVANILA------EILLDLIPQLDSHLNEDGQVIF 157 (205)
T ss_dssp SCEEEEEEESCH------HHHHHHGGGSGGGEEEEEEEEE
T ss_pred CCceEEEECCcH------HHHHHHHHHHHHhcCCCCEEEE
Confidence 899999997542 2357888999999999999885
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-14 Score=125.05 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=86.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||||||+|.+++.+++.+ +.+|+|+|+++ +++.|++++..+++.++|+++.+|..+...+..+||+|+...
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 4678899999999999999999976 66899999999 999999999999999899999999965432223799988654
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++ -..+..++......|+++|++|.
T Consensus 93 ~G-----g~~i~~Il~~~~~~L~~~~~lVl 117 (225)
T 3kr9_A 93 MG-----GRLIARILEEGLGKLANVERLIL 117 (225)
T ss_dssp EC-----HHHHHHHHHHTGGGCTTCCEEEE
T ss_pred CC-----hHHHHHHHHHHHHHhCCCCEEEE
Confidence 32 13467889999999999999883
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=124.17 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++ .+. .+++++++|+.++ ++.++||+|++..+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~~~~~~D~v~~~~~ 116 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-TPDRQWDAVFFAHW 116 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-CCSSCEEEEEEESC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-CCCCceeEEEEech
Confidence 56778999999999999999999865 999999999 9999987 444 3599999999988 66689999999765
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+++. ......+++.+.++|||||.++..
T Consensus 117 l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~ 145 (218)
T 3ou2_A 117 LAHVP-DDRFEAFWESVRSAVAPGGVVEFV 145 (218)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCC-HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 44442 233578999999999999998854
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-14 Score=132.46 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..+|.+|||+|||+|.+++.+|+.|+++|+|+|+|+ +++.+++++..|++.++++++++|+.++... +.||.|+++++
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~-~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE-NIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC-SCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc-cCCCEEEECCC
Confidence 468999999999999999999999988999999999 9999999999999999999999999987654 88999998765
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
... ..++..+.++||+||++.
T Consensus 202 ~~~-------~~~l~~a~~~lk~gG~ih 222 (278)
T 3k6r_A 202 VRT-------HEFIPKALSIAKDGAIIH 222 (278)
T ss_dssp SSG-------GGGHHHHHHHEEEEEEEE
T ss_pred CcH-------HHHHHHHHHHcCCCCEEE
Confidence 322 234555668899999875
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-14 Score=126.45 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=85.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-c--CCCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E--LPVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~~DvVvs~ 196 (409)
++.+|||||||+|.++..+|+. +...|+|||+|+ +++.|++++..+++.+ ++++++|+.++ + +++++||.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcCCCChheEEEe
Confidence 6779999999999999999984 456899999999 9999999999999865 99999999885 3 567899999986
Q ss_pred cccccccChhH------HHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENM------LNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~------~~~~l~~~~~~LkpgG~lip~ 228 (409)
...... .... .+.++..+.++|||||+++..
T Consensus 113 ~~~p~~-~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~ 149 (218)
T 3dxy_A 113 FPDPWH-KARHNKRRIVQVPFAELVKSKLQLGGVFHMA 149 (218)
T ss_dssp SCCCCC-SGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCcc-chhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence 322211 1111 135899999999999998853
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=128.09 Aligned_cols=110 Identities=23% Similarity=0.366 Sum_probs=91.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
+..+.+++... ..++.+|||+|||+|.+++.+++.|+ +|+|+|+++ +++.|++++..+++. ++++.+|+.+. +
T Consensus 107 t~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~ 180 (254)
T 2nxc_A 107 TRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-L 180 (254)
T ss_dssp HHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-G
T ss_pred HHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-C
Confidence 34455555543 46789999999999999999999888 999999999 999999999999885 89999999874 3
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.++||+|+++.+. ..+..++..+.++|||||+++..
T Consensus 181 ~~~~fD~Vv~n~~~------~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 181 PFGPFDLLVANLYA------ELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp GGCCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCCEEEECCcH------HHHHHHHHHHHHHcCCCCEEEEE
Confidence 44789999997532 24568889999999999998853
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-14 Score=134.71 Aligned_cols=106 Identities=23% Similarity=0.146 Sum_probs=88.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcccccccCC----CCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIELP----VTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~----~~~~DvVv 194 (409)
.++.+|||+|||+|.+++.+++.|+ +|++||+|+ +++.|++++..+++.+ +++++++|+.++... .++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 4678999999999999999999888 999999999 9999999999999876 599999999886421 46899999
Q ss_pred Eeccccccc-------ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMGYFLL-------FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++..+... .......++..+.++|+|||.++.
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli 270 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLV 270 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEE
Confidence 987533221 234567889999999999998663
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-14 Score=123.16 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=85.9
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
+.+...+... +.+..+|||||||+|.+++.++.. +..+|+|+|+|+ |++.+++++..+|..+++++ .|.....
T Consensus 37 d~fY~~~~~~--l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~- 111 (200)
T 3fzg_A 37 NDFYTYVFGN--IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV- 111 (200)
T ss_dssp HHHHHHHHHH--SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH-
T ss_pred HHHHHHHHhh--cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC-
Confidence 3444444433 356789999999999999999884 445999999999 99999999999999866777 5555443
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+.++||+|++.-+.+++ .+.+..+..+.+.|+|||++|
T Consensus 112 ~~~~~DvVLa~k~LHlL---~~~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 112 YKGTYDVVFLLKMLPVL---KQQDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp TTSEEEEEEEETCHHHH---HHTTCCHHHHHHTCEEEEEEE
T ss_pred CCCCcChhhHhhHHHhh---hhhHHHHHHHHHHhCCCCEEE
Confidence 44899999997655544 444455668889999999998
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=134.44 Aligned_cols=119 Identities=21% Similarity=0.219 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhcc--CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015306 106 RTKSYQNVIYQNK--FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (409)
Q Consensus 106 r~~~~~~~l~~~~--~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (409)
..+.+.+.+.... ...++.+|||+|||+|.++..+++.+. +|+++|+|+ +++.|++++..+++. ++++.+|+.+
T Consensus 215 ~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~ 291 (381)
T 3dmg_A 215 ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDE 291 (381)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTT
T ss_pred HHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhh
Confidence 3445555554432 235788999999999999999999865 999999999 999999999999875 8999999998
Q ss_pred ccCCCCceeEEEEecccccc--cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 183 IELPVTKVDIIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 183 ~~~~~~~~DvVvs~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+.++||+|+++++.+.. ........++..+.++|||||+++.
T Consensus 292 ~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~i 338 (381)
T 3dmg_A 292 ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338 (381)
T ss_dssp TSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEE
Confidence 87666899999998754331 1135677899999999999999885
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=120.76 Aligned_cols=109 Identities=23% Similarity=0.268 Sum_probs=89.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-Cc
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TK 189 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~ 189 (409)
..+.......++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.+++++..+++.++++++.+|+.+ .++. ++
T Consensus 23 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~ 100 (192)
T 1l3i_A 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPD 100 (192)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCC
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCC
Confidence 334443456788999999999999999999987 7999999999 999999999999886679999999987 2332 58
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
||+|++... + ..+..++..+.++|+|||.++..
T Consensus 101 ~D~v~~~~~---~---~~~~~~l~~~~~~l~~gG~l~~~ 133 (192)
T 1l3i_A 101 IDIAVVGGS---G---GELQEILRIIKDKLKPGGRIIVT 133 (192)
T ss_dssp EEEEEESCC---T---TCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCEEEECCc---h---HHHHHHHHHHHHhcCCCcEEEEE
Confidence 999998643 2 24578899999999999998853
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-14 Score=125.84 Aligned_cols=107 Identities=20% Similarity=0.294 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-c-CC----CCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E-LP----VTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~----~~~~D 191 (409)
.++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|+.+. + ++ .++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 46789999999999999999984 2 56999999999 9999999999999988899999998764 2 22 16899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
+|+++.. ..+......++..+ ++|||||+++.....
T Consensus 137 ~V~~d~~---~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHW---KDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSC---GGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCC---cccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 9998643 22222333566666 999999999976543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-14 Score=125.32 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
++.+|||+|||+|.++..+++. +..+|+++|+|+ +++.|++++..+++.+ ++++++|+.+.. +.++||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-SEPPFDGVISRAF- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-CCSCEEEEECSCS-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC-ccCCcCEEEEecc-
Confidence 5789999999999999999984 566999999999 9999999999998876 999999998876 3478999998542
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+..++..+.++|+|||.++..
T Consensus 142 ------~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 142 ------ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 34668899999999999998854
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=123.82 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++++ ++.++.+|+.+++ +.++||+|++..+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~ 111 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AIDAYDAVWAHAC 111 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CCSCEEEEEECSC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-CCCcEEEEEecCc
Confidence 45788999999999999999999866 999999999 999999886 2678899999988 5689999999765
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+++. ...+..++..+.++|||||+++..
T Consensus 112 l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 140 (211)
T 3e23_A 112 LLHVP-RDELADVLKLIWRALKPGGLFYAS 140 (211)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 44332 347789999999999999999853
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-14 Score=136.58 Aligned_cols=106 Identities=27% Similarity=0.363 Sum_probs=89.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHc-----C-CC-CcEEEEEcccccc------
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEAN-----G-FS-NVITVLKGKIEEI------ 183 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~-----~-~~-~~i~~~~~d~~~~------ 183 (409)
..++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..+ | +. .+++++.+|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 457889999999999999999984 355999999999 999999988765 3 22 4699999999987
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++++++||+|+++.+.+ +..++..++..+.++|||||+++..
T Consensus 161 ~~~~~~fD~V~~~~~l~---~~~d~~~~l~~~~r~LkpgG~l~i~ 202 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCN---LSTNKLALFKEIHRVLRDGGELYFS 202 (383)
T ss_dssp CCCTTCEEEEEEESCGG---GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchh---cCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 77778999999976644 3356789999999999999999864
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=121.64 Aligned_cols=103 Identities=19% Similarity=0.127 Sum_probs=85.1
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
.......++.+|||||||+|.++..+++. ..+|+++|+++ +++.|++++...++. +++++.+|+.+...+.++||+|
T Consensus 70 ~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~D~i 147 (210)
T 3lbf_A 70 TELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQARAPFDAI 147 (210)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEE
T ss_pred HHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccCCCccEE
Confidence 33355678899999999999999999998 45999999999 999999999998886 5999999998876556799999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++......+. ..+.++|||||+++..
T Consensus 148 ~~~~~~~~~~---------~~~~~~L~pgG~lv~~ 173 (210)
T 3lbf_A 148 IVTAAPPEIP---------TALMTQLDEGGILVLP 173 (210)
T ss_dssp EESSBCSSCC---------THHHHTEEEEEEEEEE
T ss_pred EEccchhhhh---------HHHHHhcccCcEEEEE
Confidence 9975433222 2467899999998853
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.4e-14 Score=124.60 Aligned_cols=98 Identities=23% Similarity=0.271 Sum_probs=84.0
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
+.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++. .+++++++|+.++++++++||+|++..+.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTT
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhc
Confidence 78999999999999999999866 999999999 999998873 3489999999999887789999999765443
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+. ...+..+++.+.++|||||.++..
T Consensus 115 ~~-~~~~~~~l~~~~~~L~pgG~l~i~ 140 (203)
T 3h2b_A 115 MG-PGELPDALVALRMAVEDGGGLLMS 140 (203)
T ss_dssp CC-TTTHHHHHHHHHHTEEEEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 32 236789999999999999998853
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=126.34 Aligned_cols=102 Identities=23% Similarity=0.279 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~DvVvs~ 196 (409)
.++.+|||||||+|..+..+++. +..+|+++|+++ +++.|++++...++.++++++.+|+.+... ..++||+|+++
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 47789999999999999999994 367999999999 999999999999998789999999987532 24899999986
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.. ......+++.+.++|||||+++..
T Consensus 150 ~~------~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 150 AA------KAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp TT------SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred Cc------HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 42 234667899999999999999864
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=126.70 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cC-C-CCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-EL-P-VTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~-~-~~~~DvVv 194 (409)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+. +. . .++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 46789999999999999999995 3 56999999999 9999999999999988899999999874 22 2 24899999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++.. ......+++.+.++|||||+++...
T Consensus 142 ~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 142 IDAD------KPNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp ECSC------GGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred ECCc------hHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 8541 2455678899999999999998644
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-15 Score=135.37 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||+|||+|.++..+++.| .+|+|+|+|+ +++.|++++..+++.++++++++|+.++. +.++||+|+++++.
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 378899999999999999999987 6999999999 99999999999998767999999999987 44799999998753
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+. .......+..+.++|+|||.++..
T Consensus 155 ~~---~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 155 GG---PDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SS---GGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred CC---cchhhhHHHHHHhhcCCcceeHHH
Confidence 33 233333556778999999987644
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=126.94 Aligned_cols=123 Identities=19% Similarity=0.172 Sum_probs=96.0
Q ss_pred ChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc
Q 015306 103 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (409)
Q Consensus 103 d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (409)
.+..++.+.+.+..... .++.+|||+|||+|.++..+++ .+..+|+|+|+|+ +++.|++++..+++. +++++++|+
T Consensus 91 pr~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~ 168 (276)
T 2b3t_A 91 PRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDW 168 (276)
T ss_dssp CCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCST
T ss_pred cCchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcch
Confidence 34456666666665443 5678999999999999999997 5567999999999 999999999998886 599999999
Q ss_pred ccccCCCCceeEEEEecccccc----------cCh------------hHHHHHHHHHHhcccCCeEEEcc
Q 015306 181 EEIELPVTKVDIIISEWMGYFL----------LFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 181 ~~~~~~~~~~DvVvs~~~~~~l----------~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+. ++.++||+|++++..... .++ .....++..+.++|+|||+++..
T Consensus 169 ~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 169 FSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp TGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 875 334789999998532111 111 34578889999999999998864
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=130.33 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC------CCCcEEEEEccccccc----CC--C
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG------FSNVITVLKGKIEEIE----LP--V 187 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~------~~~~i~~~~~d~~~~~----~~--~ 187 (409)
.++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|+++....+ ...+++++++|+.+++ ++ .
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 46789999999999999999987677999999999 9999999887642 2246999999999876 43 3
Q ss_pred CceeEEEEecccccc-cChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 188 TKVDIIISEWMGYFL-LFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++||+|++..+.+++ .+...+..++..+.++|||||.++..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGT 154 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 589999997654444 45567789999999999999999853
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=123.44 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~ 196 (409)
.++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++.+ ++++++|+.+++ ++.++||.|++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~n-v~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCC-EEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 36779999999999999999985 466999999999 9999999999998854 999999999875 566889999875
Q ss_pred ccccccc--Ch---hHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLL--FE---NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~--~~---~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
....... +. -....++..+.++|||||.++..
T Consensus 116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~ 152 (213)
T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 152 (213)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence 3221110 00 01367889999999999999853
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-14 Score=131.77 Aligned_cols=106 Identities=31% Similarity=0.328 Sum_probs=87.1
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
+.+.+.......++.+|||||||+|.++..+++.+ .+|+|+|+|+ +++.|+++. +++++.+|+++++++++
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~ 93 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPDK 93 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCTT
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCCC
Confidence 44444444556788999999999999999999865 4999999999 998876543 59999999999988888
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+||+|++..+ +.+..++..+++.+.++|| ||+++.
T Consensus 94 ~fD~v~~~~~---l~~~~~~~~~l~~~~~~Lk-gG~~~~ 128 (261)
T 3ege_A 94 SVDGVISILA---IHHFSHLEKSFQEMQRIIR-DGTIVL 128 (261)
T ss_dssp CBSEEEEESC---GGGCSSHHHHHHHHHHHBC-SSCEEE
T ss_pred CEeEEEEcch---HhhccCHHHHHHHHHHHhC-CcEEEE
Confidence 9999999765 3344678899999999999 997653
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=126.99 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=86.8
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
+.......++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.++++. .+++++.+|+.+++ ++++||
T Consensus 25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~-~~~~fD 97 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKADLATWK-PAQKAD 97 (259)
T ss_dssp HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEECCTTTCC-CSSCEE
T ss_pred HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEECChhhcC-ccCCcC
Confidence 344455667889999999999999999985 355999999999 999998871 35899999999987 668999
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|++..+ +.+..++..++..+.++|||||.++..
T Consensus 98 ~v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~~~ 131 (259)
T 2p35_A 98 LLYANAV---FQWVPDHLAVLSQLMDQLESGGVLAVQ 131 (259)
T ss_dssp EEEEESC---GGGSTTHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEeCc---hhhCCCHHHHHHHHHHhcCCCeEEEEE
Confidence 9999765 333357789999999999999998854
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=129.84 Aligned_cols=124 Identities=24% Similarity=0.264 Sum_probs=95.6
Q ss_pred hcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc
Q 015306 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK 179 (409)
Q Consensus 101 l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (409)
+..+..++.+.+.+.......++.+|||+|||+|.+++.+++.+..+|+|+|+|+ +++.|++++..+++.++++++++|
T Consensus 102 lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D 181 (284)
T 1nv8_A 102 FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE 181 (284)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESS
T ss_pred eecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence 3345556666666554433346779999999999999999987556999999999 999999999999998889999999
Q ss_pred cccccCCCCce---eEEEEeccccccc---------ChhHH--------HHHHHHHH-hcccCCeEEEc
Q 015306 180 IEEIELPVTKV---DIIISEWMGYFLL---------FENML--------NTVLYARD-KWLVDDGIVLP 227 (409)
Q Consensus 180 ~~~~~~~~~~~---DvVvs~~~~~~l~---------~~~~~--------~~~l~~~~-~~LkpgG~lip 227 (409)
+.+. ++ ++| |+|++++. |... +++.. ..+++.+. +.|+|||.++.
T Consensus 182 ~~~~-~~-~~f~~~D~IvsnPP-yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 182 FLEP-FK-EKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp TTGG-GG-GGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred chhh-cc-cccCCCCEEEEcCC-CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 9874 33 578 99999853 2211 22221 26788888 99999999885
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-14 Score=129.91 Aligned_cols=123 Identities=19% Similarity=0.012 Sum_probs=76.0
Q ss_pred cChHhHHHHHHHHHhccCC-CCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc
Q 015306 102 KDVVRTKSYQNVIYQNKFL-FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178 (409)
Q Consensus 102 ~d~~r~~~~~~~l~~~~~~-~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~ 178 (409)
..+..++.+.+.+...... .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.|++++..+++ +++++++
T Consensus 9 ~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~ 86 (215)
T 4dzr_A 9 IPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAA 86 (215)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHH
T ss_pred CCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEc
Confidence 3444555666666554433 678899999999999999999964 44999999999 99999999988877 5999999
Q ss_pred ccccccCCC-----CceeEEEEecccccccC-----------------------hhHHHHHHHHHHhcccCCeE-EEc
Q 015306 179 KIEEIELPV-----TKVDIIISEWMGYFLLF-----------------------ENMLNTVLYARDKWLVDDGI-VLP 227 (409)
Q Consensus 179 d~~~~~~~~-----~~~DvVvs~~~~~~l~~-----------------------~~~~~~~l~~~~~~LkpgG~-lip 227 (409)
|+.+ .++. ++||+|++++..+.... ......++..+.++|||||+ ++.
T Consensus 87 d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 163 (215)
T 4dzr_A 87 DGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163 (215)
T ss_dssp HHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred chHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 9987 4443 89999999864211100 00126778888999999999 553
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=133.13 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=89.9
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCC--cEEEEEcccccccCCCCc
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSN--VITVLKGKIEEIELPVTK 189 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~ 189 (409)
+.......++.+|||+|||+|.+++.+++.+ ..+|+++|+|+ +++.|++++..+++.+ +++++.+|+.+. ++.++
T Consensus 214 ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~-~~~~~ 292 (375)
T 4dcm_A 214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFR 292 (375)
T ss_dssp HHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT-CCTTC
T ss_pred HHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc-CCCCC
Confidence 4444555667899999999999999999964 67999999999 9999999999998764 588999999884 45579
Q ss_pred eeEEEEecccccc--cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
||+|+++++.+.. ........++..+.++|||||+++.
T Consensus 293 fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 332 (375)
T 4dcm_A 293 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332 (375)
T ss_dssp EEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 9999998753321 1123345789999999999999884
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=126.69 Aligned_cols=106 Identities=24% Similarity=0.324 Sum_probs=90.3
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
.+.......++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|+.+. ++.++
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~ 162 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEEN 162 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCS
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCC
Confidence 3444456788999999999999999999996 5 67999999999 9999999999999988899999999976 55578
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
||+|++++. ....++..+.++|+|||+++.
T Consensus 163 ~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~ 192 (255)
T 3mb5_A 163 VDHVILDLP--------QPERVVEHAAKALKPGGFFVA 192 (255)
T ss_dssp EEEEEECSS--------CGGGGHHHHHHHEEEEEEEEE
T ss_pred cCEEEECCC--------CHHHHHHHHHHHcCCCCEEEE
Confidence 999998642 334678888999999999884
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=118.21 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=86.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
.+.......++.+|||+|||+|.++..+++ +..+|+|+|+++ +++.|++++..++++ +++++.+|+.+ .++.++||
T Consensus 26 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAED-VLDKLEFN 102 (183)
T ss_dssp HHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHHH-HGGGCCCS
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCccc-cccCCCCc
Confidence 333334557888999999999999999999 567999999999 999999999999884 59999999988 55557899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|++..+ ..+..++..+.++ |||.++..
T Consensus 103 ~i~~~~~-------~~~~~~l~~~~~~--~gG~l~~~ 130 (183)
T 2yxd_A 103 KAFIGGT-------KNIEKIIEILDKK--KINHIVAN 130 (183)
T ss_dssp EEEECSC-------SCHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEECCc-------ccHHHHHHHHhhC--CCCEEEEE
Confidence 9999654 4566788888887 99998853
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=123.51 Aligned_cols=110 Identities=19% Similarity=0.243 Sum_probs=88.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
.+.+.+.... .++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++. .+++++.+|+.++++ .
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~ 98 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-G 98 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-S
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-C
Confidence 3444444332 5778999999999999999999765 999999999 999998864 248999999998877 4
Q ss_pred CceeEEEEec-ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 188 TKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 188 ~~~DvVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++||+|+|.. +.+++.....+..+++.+.++|||||.++..
T Consensus 99 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 99 RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8999999642 3344444467789999999999999999864
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=121.73 Aligned_cols=101 Identities=25% Similarity=0.231 Sum_probs=79.8
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc----cCCCCceeE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKVDI 192 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~Dv 192 (409)
...++.+|||||||+|.++..+++. |..+|+|+|+|+ +++.+.+..... +++.++.+|+... +++ ++||+
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~-~~fD~ 129 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIV-EKVDL 129 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTC-CCEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccc-cceeE
Confidence 4568899999999999999999985 446999999999 988777766553 3589999998774 344 78999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+++.. .......++.++.++|||||+++..
T Consensus 130 V~~~~~-----~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 130 IYQDIA-----QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecc-----ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 999731 2234455689999999999998853
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=127.98 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=81.1
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----- 185 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----- 185 (409)
+.+.......++.+|||||||+|.++..+++.|+ +|+|+|+|+ |++.|++++..+ ++..++.++..
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~ 106 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKE 106 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGG
T ss_pred HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccc
Confidence 3344456678899999999999999999999876 999999999 999999987654 22333333322
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..++||+|+++.+.+++. ......++..+.++| |||+++.+
T Consensus 107 ~~~~fD~Vv~~~~l~~~~-~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 107 LAGHFDFVLNDRLINRFT-TEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp GTTCCSEEEEESCGGGSC-HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred cCCCccEEEEhhhhHhCC-HHHHHHHHHHHHHhC-cCcEEEEE
Confidence 137899999986544332 345678889999999 99998854
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=126.47 Aligned_cols=98 Identities=19% Similarity=0.244 Sum_probs=82.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~DvVvs~ 196 (409)
..++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++ ++++.+|+.+. ++++++||+|++.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence 46778999999999999999999866 799999999 99988864 68899999886 6677899999997
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+.+++. ...+..++..+.++|||||+++..
T Consensus 109 ~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 139 (240)
T 3dli_A 109 HFVEHLD-PERLFELLSLCYSKMKYSSYIVIE 139 (240)
T ss_dssp SCGGGSC-GGGHHHHHHHHHHHBCTTCCEEEE
T ss_pred CchhhCC-cHHHHHHHHHHHHHcCCCcEEEEE
Confidence 6544442 336689999999999999998853
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=129.17 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=83.2
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
...++.+|||||||+|.++..+++.+ .+|+|+|+|+ +++.|+++. .+++++.+|+.+++++ ++||+|++..
T Consensus 54 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~-~~fD~v~~~~ 125 (279)
T 3ccf_A 54 NPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVD-KPLDAVFSNA 125 (279)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCS-SCEEEEEEES
T ss_pred CCCCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcC-CCcCEEEEcc
Confidence 35678899999999999999999954 5999999999 999998765 3488999999998874 8999999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+ +.+..++..++.++.++|||||+++.
T Consensus 126 ~---l~~~~d~~~~l~~~~~~LkpgG~l~~ 152 (279)
T 3ccf_A 126 M---LHWVKEPEAAIASIHQALKSGGRFVA 152 (279)
T ss_dssp C---GGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred h---hhhCcCHHHHHHHHHHhcCCCcEEEE
Confidence 5 33335678899999999999999885
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-13 Score=126.27 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=89.7
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CC-CEEEEEecHH-------HHHHHHHHHHHcCCCCcEEEEEcc---c
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-------MANMAKQIVEANGFSNVITVLKGK---I 180 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~-~~V~~vD~s~-------~~~~a~~~~~~~~~~~~i~~~~~d---~ 180 (409)
.+.......++.+|||||||+|.++..+++. |. .+|+|+|+|+ +++.|++++...++.++++++.+| .
T Consensus 34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 113 (275)
T 3bkx_A 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD 113 (275)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence 3444455678899999999999999999996 43 6999999986 699999999988887789999998 4
Q ss_pred ccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 181 ~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+++++++||+|++..+.+++ .....+++.+.++++|||+++..
T Consensus 114 ~~~~~~~~~fD~v~~~~~l~~~---~~~~~~~~~~~~l~~~gG~l~~~ 158 (275)
T 3bkx_A 114 DLGPIADQHFDRVVLAHSLWYF---ASANALALLFKNMAAVCDHVDVA 158 (275)
T ss_dssp CCGGGTTCCCSEEEEESCGGGS---SCHHHHHHHHHHHTTTCSEEEEE
T ss_pred ccCCCCCCCEEEEEEccchhhC---CCHHHHHHHHHHHhCCCCEEEEE
Confidence 4455566899999997654444 34456777777888889998853
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=122.95 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=83.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc----ccCCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IELPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~~D 191 (409)
....++.+|||+|||+|.++..+++. |..+|+|+|+|+ +++.|++++..+ .++.++.+|+.+ .+++ ++||
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~-~~~D 145 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIV-EKVD 145 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-CCEE
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccC-ccEE
Confidence 44567899999999999999999995 667999999999 999999887654 469999999988 6665 7899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|++.. ........++..+.++|||||+++.
T Consensus 146 ~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i 176 (230)
T 1fbn_A 146 VIYEDV-----AQPNQAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp EEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEec-----CChhHHHHHHHHHHHhCCCCcEEEE
Confidence 999542 2233456778999999999999885
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=133.19 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=89.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEccccccc--C--CCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIE--L--PVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~--~--~~~~~DvVv 194 (409)
.++.+|||+|||+|.+++.+++.|+.+|+++|+|+ +++.|++++..+++.+ +++++++|+.+.. . ...+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 57889999999999999999998888999999999 9999999999999975 7999999998742 1 135899999
Q ss_pred Eeccccc------ccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYF------LLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~------l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+++..+. .........++..+.++|+|||+++.+.
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~ 331 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 331 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9875321 1112345567788889999999988653
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.5e-14 Score=120.31 Aligned_cols=99 Identities=17% Similarity=0.096 Sum_probs=79.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CC--CCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP--VTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~--~~~~DvVvs~ 196 (409)
++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|++++..+++ +++++++|+.+.. .+ .++||+|+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 778999999999999999999876 499999999 99999999998887 5999999998742 11 2489999998
Q ss_pred cccccccChhHHHHHHHHHH--hcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (409)
++.. ...+.++..+. ++|+|||+++..
T Consensus 118 ~~~~-----~~~~~~~~~~~~~~~L~~gG~~~~~ 146 (171)
T 1ws6_A 118 PPYA-----MDLAALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp CCTT-----SCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred CCCc-----hhHHHHHHHHHhhcccCCCcEEEEE
Confidence 6422 22334445555 999999998853
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-13 Score=125.87 Aligned_cols=117 Identities=18% Similarity=0.293 Sum_probs=88.4
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEec-HH-HHHHHHHHH-----HHcCCC----CcEEE
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC-SQ-MANMAKQIV-----EANGFS----NVITV 175 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~-s~-~~~~a~~~~-----~~~~~~----~~i~~ 175 (409)
...+.+.+.......++.+|||||||+|.+++.+++.|+.+|+|+|+ ++ +++.|++++ ..+++. +++++
T Consensus 64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~ 143 (281)
T 3bzb_A 64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV 143 (281)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence 44556666665555688999999999999999999988779999999 89 999999999 555554 46888
Q ss_pred EEccccccc--C----CCCceeEEEEecccccccChhHHHHHHHHHHhccc---C--CeEEE
Q 015306 176 LKGKIEEIE--L----PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV---D--DGIVL 226 (409)
Q Consensus 176 ~~~d~~~~~--~----~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lk---p--gG~li 226 (409)
+..+..+.. + +.++||+|++..+ +.+......++..+.++|+ | ||+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dv---l~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~ 202 (281)
T 3bzb_A 144 VPYRWGDSPDSLQRCTGLQRFQVVLLADL---LSFHQAHDALLRSVKMLLALPANDPTAVAL 202 (281)
T ss_dssp EECCTTSCTHHHHHHHSCSSBSEEEEESC---CSCGGGHHHHHHHHHHHBCCTTTCTTCEEE
T ss_pred EEecCCCccHHHHhhccCCCCCEEEEeCc---ccChHHHHHHHHHHHHHhcccCCCCCCEEE
Confidence 876654421 1 3478999998433 5556778899999999999 9 99765
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=122.72 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CC---CCceeE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP---VTKVDI 192 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~---~~~~Dv 192 (409)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+.. ++ .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 46789999999999999999995 3 45999999999 99999999999999888999999997642 11 157999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
|++... ......++..+.++|+|||+++...
T Consensus 137 v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 137 IFIDAD------KQNNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp EEECSC------GGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred EEEcCC------cHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 998642 2455688899999999999988654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-14 Score=120.80 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=81.4
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.++++ . .+++++.+| .+++.++||+|++..+
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~-~~v~~~~~d---~~~~~~~~D~v~~~~~ 84 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----F-DSVITLSDP---KEIPDNSVDFILFANS 84 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----C-TTSEEESSG---GGSCTTCEEEEEEESC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----C-CCcEEEeCC---CCCCCCceEEEEEccc
Confidence 46788999999999999999999765 999999999 99999887 2 458999999 5566689999999765
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+..+...+++.+.++|||||+++..
T Consensus 85 ---l~~~~~~~~~l~~~~~~L~pgG~l~~~ 111 (170)
T 3i9f_A 85 ---FHDMDDKQHVISEVKRILKDDGRVIII 111 (170)
T ss_dssp ---STTCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---hhcccCHHHHHHHHHHhcCCCCEEEEE
Confidence 334356789999999999999999853
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=129.57 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-----------------CCC------------
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-----------------GFS------------ 170 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-----------------~~~------------ 170 (409)
.++.+|||||||+|.++..++..+..+|+|+|+|+ |++.|++++... +..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 47789999999999976666654455999999999 999998865421 100
Q ss_pred CcEEEEEccccc-ccC-----CCCceeEEEEecccccccC-hhHHHHHHHHHHhcccCCeEEEcc
Q 015306 171 NVITVLKGKIEE-IEL-----PVTKVDIIISEWMGYFLLF-ENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 171 ~~i~~~~~d~~~-~~~-----~~~~~DvVvs~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..++++.+|+.+ +++ ++++||+|++..+.+++.. ..++..++.++.++|||||+++..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 126788889987 443 3467999999765333222 457889999999999999999864
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=123.69 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCC----Ccee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV----TKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~----~~~D 191 (409)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++++|+.+.. +.. ++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 46789999999999999999985 3 57999999999 99999999999999888999999997652 111 7899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+|+++.. ......++..+.++|||||+++...
T Consensus 143 ~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 143 LIYIDAD------KANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9997542 2456778899999999999998543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.4e-14 Score=128.61 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=87.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC------CCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP------VTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~~D 191 (409)
.++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|++++...++.++|+++.+|+.+.... .++||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 46789999999999999999994 3 56999999999 9999999999999988899999999775321 37899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+|+++.. ......+++.+.++|+|||+++....
T Consensus 139 ~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 139 FIFIDAD------KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEEEESC------GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 9998642 24566788999999999999986543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-13 Score=127.64 Aligned_cols=106 Identities=23% Similarity=0.160 Sum_probs=86.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
.+.......++.+|||||||+|.++..+++.+. .+|+++|+|+ +++.|++++..+++.+ ++++.+|+.+...+.++
T Consensus 66 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~~~~~ 144 (317)
T 1dl5_A 66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEFSP 144 (317)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGCC
T ss_pred HHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccccCCC
Confidence 334445567899999999999999999999643 5799999999 9999999999999876 99999999886544578
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
||+|++..+...+. +.+.++|||||+++..
T Consensus 145 fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~ 174 (317)
T 1dl5_A 145 YDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVP 174 (317)
T ss_dssp EEEEEECSBBSCCC---------HHHHHHEEEEEEEEEE
T ss_pred eEEEEEcCCHHHHH---------HHHHHhcCCCcEEEEE
Confidence 99999976533322 4567899999998864
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.8e-14 Score=129.52 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=87.4
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC----------------------------
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF---------------------------- 169 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~---------------------------- 169 (409)
...++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4467789999999999999999887767999999999 99999988765421
Q ss_pred CCcE-EEEEcccccccC-CC---CceeEEEEeccccccc-ChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 170 SNVI-TVLKGKIEEIEL-PV---TKVDIIISEWMGYFLL-FENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 170 ~~~i-~~~~~d~~~~~~-~~---~~~DvVvs~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..++ +++.+|+.+... +. ++||+|++..+.+++. +...+..++..+.++|||||.++..
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 197 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMV 197 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Confidence 1127 999999988653 44 7899999965433221 4567889999999999999998854
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=122.60 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCC--CCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELP--VTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~--~~~~DvVvs 195 (409)
.++.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++...++.++++++.+|+.+. +.. .++||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 57789999999999999999995 356999999999 9999999999999887899999999874 221 378999998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
... . .....++..+.++|+|||+++...
T Consensus 133 ~~~---~---~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAA---K---GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGG---G---SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCC---H---HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 653 1 256788899999999999998654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-13 Score=120.61 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=83.1
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D 191 (409)
....++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.+.+++..+ .+++++.+|+.+. +...++||
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEE
Confidence 44667899999999999999999995 356999999999 998888888776 4599999999873 33457899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|++++. .......++..+.++|||||+++.
T Consensus 150 ~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i 180 (233)
T 2ipx_A 150 VIFADVA-----QPDQTRIVALNAHTFLRNGGHFVI 180 (233)
T ss_dssp EEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEE
Confidence 9999653 223445667889999999999885
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-13 Score=128.89 Aligned_cols=117 Identities=21% Similarity=0.130 Sum_probs=95.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
.+..++.......++.+|||+|||+|.+++.++..+ ..+|+|+|+++ +++.|++++..+++. +++++++|+.+++.
T Consensus 190 ~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~ 268 (354)
T 3tma_A 190 VLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPR 268 (354)
T ss_dssp HHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGG
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcc
Confidence 455555555667788999999999999999999953 46999999999 999999999999997 79999999999887
Q ss_pred CCCceeEEEEeccccccc-C-----hhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYFLL-F-----ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~-~-----~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+.||+|+++++ |... . ......++..+.++|||||.++.
T Consensus 269 ~~~~~D~Ii~npP-yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i 315 (354)
T 3tma_A 269 FFPEVDRILANPP-HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVAL 315 (354)
T ss_dssp TCCCCSEEEECCC-SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred ccCCCCEEEECCC-CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 6677999999874 3221 1 12236788899999999999875
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-13 Score=126.25 Aligned_cols=105 Identities=20% Similarity=0.162 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCCCChHHHHHH----H-cCCCEE--EEEecHH-HHHHHHHHHHHc-CCCC-cEEEEEccccccc------
Q 015306 121 FKDKVVLDVGAGTGILSLFCA----K-AGAAHV--YAVECSQ-MANMAKQIVEAN-GFSN-VITVLKGKIEEIE------ 184 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la----~-~g~~~V--~~vD~s~-~~~~a~~~~~~~-~~~~-~i~~~~~d~~~~~------ 184 (409)
.++.+|||||||+|.++..++ . .+..+| +|+|+|+ |++.|++++... ++.+ .+.+..++++++.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 466799999999997665332 2 233444 9999999 999999988754 4432 2345567776654
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++++||+|++..+ +++..++..++.++.++|||||+++..
T Consensus 131 ~~~~~fD~V~~~~~---l~~~~d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 131 KELQKWDFIHMIQM---LYYVKDIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp TCCCCEEEEEEESC---GGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCceeEEEEeee---eeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence 44689999999655 555567889999999999999998853
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.43 E-value=9e-13 Score=130.00 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=88.1
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHH-------HHHHHHcCCC-CcEEEEEcccc
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMA-------KQIVEANGFS-NVITVLKGKIE 181 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a-------~~~~~~~~~~-~~i~~~~~d~~ 181 (409)
..+.......++.+|||||||+|.++..+++ .|..+|+|||+++ +++.| ++++...|+. .+++++++|..
T Consensus 232 ~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 232 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 3344445667899999999999999999999 5777999999999 99999 8888888853 56999987543
Q ss_pred cc--cC--CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 182 EI--EL--PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 182 ~~--~~--~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.. .+ ..++||+|+++.. +. ...+..++.++.+.|||||+++..
T Consensus 312 ~~~~~~~~~~~~FDvIvvn~~---l~-~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILVNNF---LF-DEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp TTCHHHHHHGGGCSEEEECCT---TC-CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccccccccccCCCCEEEEeCc---cc-cccHHHHHHHHHHhCCCCeEEEEe
Confidence 21 11 1378999998532 22 256777889999999999998854
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=126.07 Aligned_cols=107 Identities=10% Similarity=0.064 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHc---CCCCc---------------------
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEAN---GFSNV--------------------- 172 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~---~~~~~--------------------- 172 (409)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++++..+ ++.++
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 46789999999999999999986 345899999999 999999988766 44333
Q ss_pred ----EE-------------EEEcccccccC-----CCCceeEEEEecccccccC------hhHHHHHHHHHHhcccCCeE
Q 015306 173 ----IT-------------VLKGKIEEIEL-----PVTKVDIIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGI 224 (409)
Q Consensus 173 ----i~-------------~~~~d~~~~~~-----~~~~~DvVvs~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~ 224 (409)
++ ++++|+.+... ...+||+|+++++...... ......++..+.++|+|||+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 66 99999987532 3348999999864322221 24567889999999999999
Q ss_pred EEc
Q 015306 225 VLP 227 (409)
Q Consensus 225 lip 227 (409)
++.
T Consensus 210 l~~ 212 (250)
T 1o9g_A 210 IAV 212 (250)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-13 Score=120.61 Aligned_cols=102 Identities=18% Similarity=0.256 Sum_probs=85.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~DvVvs~ 196 (409)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+. +...+ ||+|+++
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 36789999999999999999985 3 56999999999 9999999999988877899999999875 33236 9999986
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
.. ......+++.+.++|||||+++...
T Consensus 134 ~~------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CD------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CC------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 31 2355788999999999999998654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.3e-13 Score=122.18 Aligned_cols=106 Identities=27% Similarity=0.242 Sum_probs=88.7
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEcccccccCCCC
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~ 188 (409)
.+.......++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..+ + .++++++.+|+.+.+++.+
T Consensus 87 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~~ 165 (258)
T 2pwy_A 87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEEA 165 (258)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCTT
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCCC
Confidence 3444456778999999999999999999996 5 56999999999 999999999887 7 4569999999998867668
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+||+|++++. ....++..+.++|+|||.++.
T Consensus 166 ~~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~ 196 (258)
T 2pwy_A 166 AYDGVALDLM--------EPWKVLEKAALALKPDRFLVA 196 (258)
T ss_dssp CEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEE
T ss_pred CcCEEEECCc--------CHHHHHHHHHHhCCCCCEEEE
Confidence 8999998542 334678888899999999884
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-13 Score=116.35 Aligned_cols=100 Identities=23% Similarity=0.272 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe-c
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE-W 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~-~ 197 (409)
..++.+|||||||+|.++..+++.+. +|+++|+++ +++.++++.. +++++.+|+.+++++.++||+|++. .
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~~~D~i~~~~~ 116 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQISETDFDLIVSAGN 116 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCCCCCceeEEEECCc
Confidence 35788999999999999999999865 999999999 9999988752 3889999999987777899999996 3
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+++ .......++..+.++|+|||.++.
T Consensus 117 ~~~~~-~~~~~~~~l~~~~~~l~~~G~l~~ 145 (195)
T 3cgg_A 117 VMGFL-AEDGREPALANIHRALGADGRAVI 145 (195)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhhc-ChHHHHHHHHHHHHHhCCCCEEEE
Confidence 33322 335667899999999999999885
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.9e-13 Score=119.66 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=82.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
.+.......++.+|||||||+|.++..+++.+ .+|+++|+++ +++.|++++...+ +++++.+|+.+.....++||
T Consensus 61 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGGCCEE
T ss_pred HHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccCCCcc
Confidence 34444556788999999999999999999986 6999999999 9999999987665 59999999987333347899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|++....+.+. ..+.++|+|||+++..
T Consensus 137 ~v~~~~~~~~~~---------~~~~~~L~pgG~l~~~ 164 (231)
T 1vbf_A 137 RVVVWATAPTLL---------CKPYEQLKEGGIMILP 164 (231)
T ss_dssp EEEESSBBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred EEEECCcHHHHH---------HHHHHHcCCCcEEEEE
Confidence 999975433221 3567899999998744
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-13 Score=123.60 Aligned_cols=97 Identities=25% Similarity=0.353 Sum_probs=80.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++.. . .++.+|+.++++++++||+|++.....
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~~~~fD~v~~~~~~~ 125 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFPSGAFEAVLALGDVL 125 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSCTTCEEEEEECSSHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCCCCCEEEEEEcchhh
Confidence 788999999999999999999865 999999999 9999988753 1 288999999888778999999853222
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++. ..+..+++++.++|||||.++..
T Consensus 126 ~~~--~~~~~~l~~~~~~LkpgG~l~~~ 151 (260)
T 2avn_A 126 SYV--ENKDKAFSEIRRVLVPDGLLIAT 151 (260)
T ss_dssp HHC--SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcc--ccHHHHHHHHHHHcCCCeEEEEE
Confidence 221 34788999999999999998854
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-13 Score=124.87 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
...++.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|++++..+++.+ +.++++|+.+.+. .++||+|+++
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~-~~~~~~d~~~~~~-~~~~D~Vi~d 193 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADNRDVEL-KDVADRVIMG 193 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSS-EEEEESCGGGCCC-TTCEEEEEEC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEECChHHcCc-cCCceEEEEC
Confidence 3578899999999999999999996 467999999999 9999999999999865 8899999998833 4789999998
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.. ....++..+.+.|+|||+++.
T Consensus 194 ~p~-------~~~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 194 YVH-------KTHKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp CCS-------SGGGGHHHHHHHEEEEEEEEE
T ss_pred Ccc-------cHHHHHHHHHHHcCCCCEEEE
Confidence 642 334567777899999999884
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=117.29 Aligned_cols=105 Identities=22% Similarity=0.205 Sum_probs=83.0
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.......++.+|||||||+|.++..+++.+. .+|+++|+++ +++.|++++...++.+ ++++.+|+.......++|
T Consensus 69 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~f 147 (215)
T 2yxe_A 69 MCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGTLGYEPLAPY 147 (215)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGGGCCGGGCCE
T ss_pred HHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCCCCCCe
Confidence 33344567889999999999999999999642 6999999999 9999999998888765 999999986543324789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|++......+. +.+.++|||||+++..
T Consensus 148 D~v~~~~~~~~~~---------~~~~~~L~pgG~lv~~ 176 (215)
T 2yxe_A 148 DRIYTTAAGPKIP---------EPLIRQLKDGGKLLMP 176 (215)
T ss_dssp EEEEESSBBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred eEEEECCchHHHH---------HHHHHHcCCCcEEEEE
Confidence 9999965433221 3667999999998743
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.9e-13 Score=130.62 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=90.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC-CCcEEEEEcccccccC----CCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF-SNVITVLKGKIEEIEL----PVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~~----~~~~~DvVv 194 (409)
.++.+|||+|||+|.+++.+++.|+.+|+|+|+|+ +++.|++++..+++ .++++++++|+.++.. ...+||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 57889999999999999999998888999999999 99999999999998 6579999999988632 136899999
Q ss_pred Eeccccc------ccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYF------LLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~------l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+++..+. .........++..+.++|+|||+++.+.
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFS 339 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9874321 1112456788888889999999988543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-13 Score=124.32 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=89.1
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.......++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|+.+. ++.++|
T Consensus 104 i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~ 182 (277)
T 1o54_A 104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDV 182 (277)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSE
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCcc
Confidence 334456778899999999999999999996 5 57999999999 9999999999988867799999999887 555789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|++++. ....++..+.++|+|||.++..
T Consensus 183 D~V~~~~~--------~~~~~l~~~~~~L~pgG~l~~~ 212 (277)
T 1o54_A 183 DALFLDVP--------DPWNYIDKCWEALKGGGRFATV 212 (277)
T ss_dssp EEEEECCS--------CGGGTHHHHHHHEEEEEEEEEE
T ss_pred CEEEECCc--------CHHHHHHHHHHHcCCCCEEEEE
Confidence 99998642 2346778888999999998853
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.1e-13 Score=119.73 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=83.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (409)
..+.||.+|||+|||+|.++..+|+. | ..+|+|+|+++ |++.+++++... .++..+.+|..... ...+.+|
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCCEE
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccceEE
Confidence 56889999999999999999999994 4 57999999999 999998887654 34888888886643 3457899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+++.. +......++.++.++|||||.++.
T Consensus 150 vVf~d~~-----~~~~~~~~l~~~~r~LKpGG~lvI 180 (233)
T 4df3_A 150 GLYADVA-----QPEQAAIVVRNARFFLRDGGYMLM 180 (233)
T ss_dssp EEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEecc-----CChhHHHHHHHHHHhccCCCEEEE
Confidence 9997532 335667889999999999999874
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=122.52 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=80.5
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCC-CCceeEE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELP-VTKVDII 193 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~-~~~~DvV 193 (409)
...++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++ .++.++.+|+.++ ++. ..+||+|
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v 120 (227)
T 3e8s_A 49 LGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLI 120 (227)
T ss_dssp HHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEE
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEE
Confidence 345678999999999999999999866 999999999 99999876 2367888998887 433 3569999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++..+.+ ..++..+++.+.++|||||+++..
T Consensus 121 ~~~~~l~----~~~~~~~l~~~~~~L~pgG~l~~~ 151 (227)
T 3e8s_A 121 CANFALL----HQDIIELLSAMRTLLVPGGALVIQ 151 (227)
T ss_dssp EEESCCC----SSCCHHHHHHHHHTEEEEEEEEEE
T ss_pred EECchhh----hhhHHHHHHHHHHHhCCCeEEEEE
Confidence 9975433 356778999999999999999854
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.9e-13 Score=139.79 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcccccc-cCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEI-ELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~~DvVvs~~ 197 (409)
.++++|||+|||+|.+++.+++.|+.+|++||+|+ +++.|++++..|++. ++++++++|+.++ +...++||+|++++
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 47899999999999999999998898999999999 999999999999997 5799999999884 33347899999987
Q ss_pred cccc--------ccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYF--------LLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~--------l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+. .........++..+.++|+|||+++.+
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s 656 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFS 656 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 4321 222345678888999999999999854
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-13 Score=131.69 Aligned_cols=109 Identities=24% Similarity=0.211 Sum_probs=90.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----CCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~DvVvs 195 (409)
.++.+|||+|||+|.+++.+++.|+.+|+|+|+|+ +++.|++++..+++.++++++++|+.+... ..++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 37889999999999999999998888999999999 999999999999997679999999987642 2468999999
Q ss_pred ecccccccC------hhHHHHHHHHHHhcccCCeEEEccC
Q 015306 196 EWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++..+.... ......++..+.++|+|||.++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 335 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 335 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 874322111 1345678888899999999988543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.4e-13 Score=120.95 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=81.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH------cCCCCcEEEEEccccc-cc--CCCC
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA------NGFSNVITVLKGKIEE-IE--LPVT 188 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~------~~~~~~i~~~~~d~~~-~~--~~~~ 188 (409)
..++.+|||||||+|.++..+|+. +...|+|||+|+ +++.|++++.. .++ .++.++++|+.+ ++ ++.+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCc
Confidence 356679999999999999999985 466999999999 99999988764 345 459999999987 55 6678
Q ss_pred ceeEEEEeccccccc--Chh---HHHHHHHHHHhcccCCeEEEcc
Q 015306 189 KVDIIISEWMGYFLL--FEN---MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~--~~~---~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++|.|++........ +.. ..+.++..+.++|||||.++..
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 999998753211110 000 0147899999999999998853
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-13 Score=123.75 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc-ccccCC-CCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELP-VTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-~~~~DvVvs~~ 197 (409)
.++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++ . .+++++++|+ ..++++ +++||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~~~~~~~fD~v~~~~ 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN-----A-PHADVYEWNGKGELPAGLGAPFGLIVSRR 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH-----C-TTSEEEECCSCSSCCTTCCCCEEEEEEES
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh-----C-CCceEEEcchhhccCCcCCCCEEEEEeCC
Confidence 6788999999999999999999865 999999999 99999987 1 3589999999 556666 68999999862
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+..++..+.++|||||.++
T Consensus 120 ---------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 ---------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ---------CCSGGGGGHHHHEEEEEEEE
T ss_pred ---------CHHHHHHHHHHHcCCCcEEE
Confidence 33466778889999999998
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-13 Score=123.42 Aligned_cols=112 Identities=16% Similarity=0.092 Sum_probs=89.8
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----CCCcee
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVD 191 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D 191 (409)
...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++..+++. +++++++|+.++.. ..++||
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD 158 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFD 158 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCC
Confidence 3568899999999999999999983 447999999999 999999999999986 59999999988764 247899
Q ss_pred EEEEeccccccc---------------ChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 192 IIISEWMGYFLL---------------FENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 192 vVvs~~~~~~l~---------------~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
+|++++..+... .......++..+.++|||||+++.++++
T Consensus 159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 999985432211 0123467889999999999999865543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=122.38 Aligned_cols=108 Identities=28% Similarity=0.357 Sum_probs=89.0
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHc-C-CCCcEEEEEcccccccCCC
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEAN-G-FSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~-~-~~~~i~~~~~d~~~~~~~~ 187 (409)
.+.......++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..+ + +.++++++.+|+.+..++.
T Consensus 90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~ 169 (280)
T 1i9g_A 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD 169 (280)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT
T ss_pred HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCC
Confidence 3444456778899999999999999999984 3 56999999999 999999999887 4 4467999999999987766
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++||+|+++.. .+..++..+.++|+|||.++..
T Consensus 170 ~~~D~v~~~~~--------~~~~~l~~~~~~L~pgG~l~~~ 202 (280)
T 1i9g_A 170 GSVDRAVLDML--------APWEVLDAVSRLLVAGGVLMVY 202 (280)
T ss_dssp TCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEECCc--------CHHHHHHHHHHhCCCCCEEEEE
Confidence 88999998542 2336788889999999998853
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=119.64 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=88.0
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
+.......++.+|||+|||+|.++..+++. ..+|+++|+++ +++.|+++....++.++++++.+|+.+..++.++||+
T Consensus 83 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 161 (248)
T 2yvl_A 83 IALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHA 161 (248)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSE
T ss_pred HHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccE
Confidence 334455678899999999999999999998 66999999999 9999999999988877799999999886535578999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|++++. .+..++..+.++|+|||.++.
T Consensus 162 v~~~~~--------~~~~~l~~~~~~L~~gG~l~~ 188 (248)
T 2yvl_A 162 AFVDVR--------EPWHYLEKVHKSLMEGAPVGF 188 (248)
T ss_dssp EEECSS--------CGGGGHHHHHHHBCTTCEEEE
T ss_pred EEECCc--------CHHHHHHHHHHHcCCCCEEEE
Confidence 998532 334567888899999999885
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=124.82 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=89.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++..+++.+ ++++++|+.++....++||+|+
T Consensus 114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~~~~~~~~~~fD~Il 192 (315)
T 1ixk_A 114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELNVEFDKIL 192 (315)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGCCCEEEEE
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECChhhcccccccCCEEE
Confidence 34578899999999999999999984 346999999999 9999999999999864 9999999998764447899999
Q ss_pred Eeccccc---ccChh----------------HHHHHHHHHHhcccCCeEEEccCCc
Q 015306 195 SEWMGYF---LLFEN----------------MLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 195 s~~~~~~---l~~~~----------------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
+++..+. +...+ ....++..+.++|||||+++.++++
T Consensus 193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 9754221 11111 1257888999999999999865544
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.40 E-value=6e-13 Score=122.79 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=78.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCC---CCceeEE
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELP---VTKVDII 193 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~---~~~~DvV 193 (409)
++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++.++++++++|+.+. .++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 5789999999999999988874 346999999999 9999999999999988899999998763 233 2589999
Q ss_pred EEecccccccCh-h-----------HHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFE-N-----------MLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~-~-----------~~~~~l~~~~~~LkpgG~lip 227 (409)
+++++.+....+ . ....++..+.++|||||.+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 999743222100 0 112456677899999998654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.3e-13 Score=123.84 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=85.3
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEcccccccCCCC
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~ 188 (409)
.+.......++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..+ +. ++++++.+|+.+ .++++
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~-~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD-FISDQ 178 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-CCCSC
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-cCcCC
Confidence 3444456778899999999999999999986 356999999999 999999999887 75 459999999988 45557
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+||+|++.+ .....+++.+.++|||||+++..
T Consensus 179 ~fD~Vi~~~--------~~~~~~l~~~~~~LkpgG~l~i~ 210 (275)
T 1yb2_A 179 MYDAVIADI--------PDPWNHVQKIASMMKPGSVATFY 210 (275)
T ss_dssp CEEEEEECC--------SCGGGSHHHHHHTEEEEEEEEEE
T ss_pred CccEEEEcC--------cCHHHHHHHHHHHcCCCCEEEEE
Confidence 899999843 23357788899999999998854
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-13 Score=122.37 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-c-C-----CCCce
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E-L-----PVTKV 190 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~~ 190 (409)
.++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+. + + +.++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 46789999999999999999995 3 46999999999 9999999999999988899999999774 2 2 14789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
|+|+++.. ......+++.+.++|||||+++...
T Consensus 158 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 99998642 1346688899999999999998643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=8e-13 Score=121.07 Aligned_cols=103 Identities=13% Similarity=-0.021 Sum_probs=84.4
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-----CceeE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-----TKVDI 192 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~Dv 192 (409)
...++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++... .+++++++|+.+++... ..||+
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~d~ 127 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA----ANISYRLLDGLVPEQAAQIHSEIGDAN 127 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC----TTEEEEECCTTCHHHHHHHHHHHCSCE
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc----cCceEEECcccccccccccccccCccE
Confidence 356788999999999999999999877 999999999 99999987621 35999999998875431 24999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|++..+.+++ .......++..+.++|||||+++.
T Consensus 128 v~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i 161 (245)
T 3ggd_A 128 IYMRTGFHHI-PVEKRELLGQSLRILLGKQGAMYL 161 (245)
T ss_dssp EEEESSSTTS-CGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred EEEcchhhcC-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 9998765544 234678999999999999998764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-12 Score=116.79 Aligned_cols=101 Identities=21% Similarity=0.272 Sum_probs=81.4
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDI 192 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~Dv 192 (409)
...++.+|||+|||+|.++..+++. | ..+|+|+|+++ +++.+++++..+ .+++++.+|+.+.. ...++||+
T Consensus 70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~ 146 (227)
T 1g8a_A 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceE
Confidence 4668899999999999999999985 4 46999999999 999999988654 46999999998742 11368999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+++.. .......++..+.++|||||.++.
T Consensus 147 v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~ 176 (227)
T 1g8a_A 147 IFEDVA-----QPTQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp EEECCC-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCC-----CHhHHHHHHHHHHHhcCCCCEEEE
Confidence 998653 223344558899999999999884
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=119.47 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-----CCCce
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-----PVTKV 190 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~~~~~ 190 (409)
.++++|||||||+|..++.+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+.. + +.++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 46789999999999999999985 3 56999999999 99999999999999888999999997752 2 14789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
|+|+++.. ......+++.+.++|+|||+++...
T Consensus 149 D~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99998631 2456788899999999999998654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-13 Score=122.66 Aligned_cols=106 Identities=18% Similarity=0.076 Sum_probs=79.7
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHH----HHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIV----EANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~----~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
..++.+|||||||+|.++..+++.+ ..+|+|+|+|+ |++.+.+.+ ...+++ +++++++|+.+++++.+. |.|
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~-d~v 102 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERLPPLSGV-GEL 102 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTCCSCCCE-EEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhCCCCCCC-CEE
Confidence 4678899999999999999999963 56999999999 998644333 234554 599999999998887666 888
Q ss_pred EEeccccccc--ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+......... +..+...++..+.++|||||.++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 138 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLV 138 (218)
T ss_dssp EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEE
Confidence 7432111110 122337889999999999999885
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.5e-13 Score=120.36 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-c------------
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E------------ 184 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~------------ 184 (409)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+. +
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 46789999999999999999995 3 56999999999 9999999999999888899999998763 1
Q ss_pred --CC-C-CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 185 --LP-V-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 185 --~~-~-~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++ . ++||+|++... ......++..+.++|+|||+++..
T Consensus 139 ~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~ 180 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIAD 180 (239)
T ss_dssp TTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 11 1 78999998531 245668889999999999999854
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-13 Score=119.62 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCC----Ccee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV----TKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~----~~~D 191 (409)
.++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|+.+.. ++. ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 57789999999999999999984 3 56999999999 99999999999998888999999997652 211 6899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+|+++.. ......+++.+.++|+|||+++...
T Consensus 148 ~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 148 VAVVDAD------KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEECSC------STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 9998642 2345678888999999999998643
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=134.41 Aligned_cols=105 Identities=15% Similarity=0.098 Sum_probs=85.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHc------CCCCcEEEEEcccccccCCCCce
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEAN------GFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~------~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
..++.+|||||||+|.++..+++.+. .+|+|+|+|+ +++.|++++... ++ .+++++++|+.+++++.++|
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~sF 797 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHDV 797 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCSC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCCe
Confidence 35889999999999999999999763 6999999999 999999876642 44 36999999999998888899
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|++..+..++. ......++..+.++|||| .++.
T Consensus 798 DlVV~~eVLeHL~-dp~l~~~L~eI~RvLKPG-~LII 832 (950)
T 3htx_A 798 DIGTCLEVIEHME-EDQACEFGEKVLSLFHPK-LLIV 832 (950)
T ss_dssp CEEEEESCGGGSC-HHHHHHHHHHHHHTTCCS-EEEE
T ss_pred eEEEEeCchhhCC-hHHHHHHHHHHHHHcCCC-EEEE
Confidence 9999976544442 234457889999999999 5553
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=119.55 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCC---ChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----------C
Q 015306 122 KDKVVLDVGAGT---GILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----------L 185 (409)
Q Consensus 122 ~~~~VLDlGcG~---G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 185 (409)
...+|||||||+ |.++..+++. +..+|+++|+|+ |++.|++++.. .++++++.+|+.+.. +
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhccC
Confidence 457999999999 9888777763 456999999999 99999998843 246999999997632 3
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+..+||+|++..+.+++..+ ....+++++.++|+|||.++...
T Consensus 154 d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~ 196 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTS 196 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEE
Confidence 33589999997765655443 57899999999999999998643
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.4e-12 Score=111.54 Aligned_cols=100 Identities=25% Similarity=0.196 Sum_probs=81.2
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
...++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++..+++ +++++++|+.+++ ++||+|++++
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~ 120 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMNP 120 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEECC
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC---CCCCEEEEcC
Confidence 3457889999999999999999998877999999999 99999999988887 5999999999863 5899999997
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+.+ .........+++.+.++| ||.++
T Consensus 121 p~~-~~~~~~~~~~l~~~~~~l--~~~~~ 146 (207)
T 1wy7_A 121 PFG-SQRKHADRPFLLKAFEIS--DVVYS 146 (207)
T ss_dssp CCS-SSSTTTTHHHHHHHHHHC--SEEEE
T ss_pred CCc-cccCCchHHHHHHHHHhc--CcEEE
Confidence 533 322234456777777887 55443
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=117.45 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc----cCCC--Ccee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPV--TKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~--~~~D 191 (409)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+. +..+ ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 46789999999999999999985 3 45999999999 9999999999999888899999998653 1222 6899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+|+++.. ......+++.+.++|+|||+++...
T Consensus 151 ~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 151 LIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEEECSC------GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 9998642 2456778899999999999998654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.37 E-value=5e-12 Score=122.28 Aligned_cols=111 Identities=10% Similarity=0.123 Sum_probs=91.3
Q ss_pred HHhccCCCC-CCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCC
Q 015306 114 IYQNKFLFK-DKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVT 188 (409)
Q Consensus 114 l~~~~~~~~-~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~ 188 (409)
+.......+ +.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++++++.+|+.+.+ .+ +
T Consensus 170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~ 247 (352)
T 3mcz_A 170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG-G 247 (352)
T ss_dssp HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT-C
T ss_pred HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC-C
Confidence 333344455 889999999999999999984 5669999999 7 99999999999998888999999999876 44 6
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.||+|++..+.+.+ .......+++.+.+.|+|||+++.
T Consensus 248 ~~D~v~~~~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i 285 (352)
T 3mcz_A 248 AADVVMLNDCLHYF-DAREAREVIGHAAGLVKPGGALLI 285 (352)
T ss_dssp CEEEEEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CccEEEEecccccC-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 79999997654433 233457899999999999999874
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-12 Score=121.53 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=90.1
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
+.+.....++.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++++++.+|+.+.+++ .+|
T Consensus 182 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D 258 (359)
T 1x19_A 182 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EAD 258 (359)
T ss_dssp HHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC--CCS
T ss_pred HHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC--CCC
Confidence 333345667889999999999999999985 4569999999 9 9999999999999888899999999987665 349
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|++..+.+.+. ......+++.+.+.|||||+++.
T Consensus 259 ~v~~~~vlh~~~-d~~~~~~l~~~~~~L~pgG~l~i 293 (359)
T 1x19_A 259 AVLFCRILYSAN-EQLSTIMCKKAFDAMRSGGRLLI 293 (359)
T ss_dssp EEEEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEE
T ss_pred EEEEechhccCC-HHHHHHHHHHHHHhcCCCCEEEE
Confidence 999976543332 23477899999999999999874
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=123.87 Aligned_cols=101 Identities=20% Similarity=0.301 Sum_probs=79.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcC----------CCCcEEEEEcccccc-
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANG----------FSNVITVLKGKIEEI- 183 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~----------~~~~i~~~~~d~~~~- 183 (409)
....++.+|||+|||+|.++..+++. |. .+|+++|+++ +++.|++++...+ +.++++++.+|+.+.
T Consensus 101 l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~ 180 (336)
T 2b25_A 101 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 180 (336)
T ss_dssp HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence 45678999999999999999999995 54 7999999999 9999999988532 235699999999886
Q ss_pred -cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 184 -ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 184 -~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++.++||+|+++... ...++..+.++|+|||.++
T Consensus 181 ~~~~~~~fD~V~~~~~~--------~~~~l~~~~~~LkpgG~lv 216 (336)
T 2b25_A 181 EDIKSLTFDAVALDMLN--------PHVTLPVFYPHLKHGGVCA 216 (336)
T ss_dssp -------EEEEEECSSS--------TTTTHHHHGGGEEEEEEEE
T ss_pred cccCCCCeeEEEECCCC--------HHHHHHHHHHhcCCCcEEE
Confidence 3455689999986431 1236788899999999988
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-12 Score=117.66 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=82.9
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHc--------CCCCcEEEEEccccc-cc--CC
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEAN--------GFSNVITVLKGKIEE-IE--LP 186 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~--------~~~~~i~~~~~d~~~-~~--~~ 186 (409)
..++.+|||||||+|.+++.+++.+ ..+|+|||+|+ +++.|++++..+ ++. +++++.+|+.+ ++ ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhcc
Confidence 3567899999999999999999975 45899999999 999999998876 664 59999999987 44 55
Q ss_pred CCceeEEEEecccccccC-----hhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLF-----ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+++|.|+.......... ......++..+.++|+|||.++.
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 688999986432111000 00014788899999999999885
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-12 Score=114.40 Aligned_cols=100 Identities=21% Similarity=0.197 Sum_probs=81.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcCC----CCcEEEEEcccccccCCCCceeE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
..++.+|||||||+|.++..+++. |. .+|+++|+++ +++.|++++..+++ .++++++.+|+.......++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 568899999999999999999985 43 5999999999 99999999988664 34699999999876554578999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|++..... .++..+.++|||||+++..
T Consensus 155 i~~~~~~~---------~~~~~~~~~LkpgG~lv~~ 181 (226)
T 1i1n_A 155 IHVGAAAP---------VVPQALIDQLKPGGRLILP 181 (226)
T ss_dssp EEECSBBS---------SCCHHHHHTEEEEEEEEEE
T ss_pred EEECCchH---------HHHHHHHHhcCCCcEEEEE
Confidence 99865321 1235677999999998853
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=125.60 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=88.1
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
.+.......++.+|||+|||+|.++..+++.+ ..+|+++|+|+ +++.|++++..+++. ++++.+|+.+.. .++|
T Consensus 187 ~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~--~~~f 262 (343)
T 2pjd_A 187 LLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV--KGRF 262 (343)
T ss_dssp HHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC--CSCE
T ss_pred HHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc--cCCe
Confidence 33333433456799999999999999999975 34999999999 999999999998875 577889987653 4799
Q ss_pred eEEEEeccccccc--ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+++++.+... +......++..+.++|||||.++.
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i 301 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 9999987533211 234567899999999999999874
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.1e-12 Score=120.23 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=88.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||||||+|.++..+++. +..+++++|++.+++.|++++...++.++++++.+|+.+.+++ +.||+|++..+.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~v~~~~~l 242 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYG-NDYDLVLLPNFL 242 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC-SCEEEEEEESCG
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCcEEEEcchh
Confidence 67789999999999999999985 4569999999998999999999888888899999999887666 459999996553
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++ .......+++.+.++|+|||+++..
T Consensus 243 ~~~-~~~~~~~~l~~~~~~L~pgG~l~i~ 270 (335)
T 2r3s_A 243 HHF-DVATCEQLLRKIKTALAVEGKVIVF 270 (335)
T ss_dssp GGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccC-CHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 333 2245578999999999999987743
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-12 Score=123.46 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=87.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~DvVvs~ 196 (409)
..+.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++++++.+|+.+. +++ ++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 46689999999999999999984 4669999999 8 9999999998888878899999999986 355 789999997
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+.+.+ .......+++.+.+.|||||+++.
T Consensus 256 ~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i 285 (363)
T 3dp7_A 256 QFLDCF-SEEEVISILTRVAQSIGKDSKVYI 285 (363)
T ss_dssp SCSTTS-CHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred chhhhC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 654333 234556889999999999999874
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.5e-12 Score=112.88 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=77.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---CCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D 191 (409)
..+.+|.+|||+|||+|.++..+++. | ..+|+|+|+++ +++.+.+..... .++.++.+|+..... ..++||
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D 148 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVD 148 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEE
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceE
Confidence 34788999999999999999999984 4 56999999999 986665555443 359999999986532 136899
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|+++.. . ......+...+.++|||||+++..
T Consensus 149 ~I~~d~a---~--~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 149 VLYVDIA---Q--PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp EEEECCC---C--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecCC---C--hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 9999753 1 233334455666699999999854
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.6e-12 Score=122.00 Aligned_cols=111 Identities=22% Similarity=0.180 Sum_probs=89.0
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
.......++.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++++++.+|+.+ +++ ..||+
T Consensus 175 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~ 251 (374)
T 1qzz_A 175 ADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADV 251 (374)
T ss_dssp HHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEE
T ss_pred HHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC-CCCCE
Confidence 33344567889999999999999999985 3569999999 8 999999999999988789999999976 444 45999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
|++..+.+.+. ......+++.+.++|||||+++...
T Consensus 252 v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e 287 (374)
T 1qzz_A 252 VLLSFVLLNWS-DEDALTILRGCVRALEPGGRLLVLD 287 (374)
T ss_dssp EEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99976544332 2233588999999999999887543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-12 Score=115.48 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=81.2
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCC------CEEEEEecHH-HHHHHHHHHHHcCC----CCcEEEEEccccccc---
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGA------AHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIE--- 184 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~------~~V~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~--- 184 (409)
...++.+|||||||+|.++..+++... .+|+++|+++ +++.|++++...++ .++++++.+|+.+..
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 457889999999999999999999632 5999999999 99999999988873 346999999998854
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...++||+|++...... ++..+.++|||||+++.
T Consensus 157 ~~~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~ 191 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASE---------LPEILVDLLAENGKLII 191 (227)
T ss_dssp HHHHCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEE
Confidence 44578999998653221 23667789999999874
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=125.19 Aligned_cols=96 Identities=19% Similarity=0.296 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||+|||+|.+++. ++ ++.+|+|+|+|+ +++.|++++..+++.++++++++|+.++. ++||+|++++..
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence 5789999999999999999 88 688999999999 99999999999999778999999999875 789999998642
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+. ..++..+.++|+|||.++..
T Consensus 269 ~~-------~~~l~~~~~~L~~gG~l~~~ 290 (336)
T 2yx1_A 269 FA-------HKFIDKALDIVEEGGVIHYY 290 (336)
T ss_dssp TG-------GGGHHHHHHHEEEEEEEEEE
T ss_pred hH-------HHHHHHHHHHcCCCCEEEEE
Confidence 21 26677788999999998753
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=116.74 Aligned_cols=96 Identities=24% Similarity=0.276 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc--ccCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~DvVvs~~ 197 (409)
.++.+|||+|||+|.++..+++.| .+|+++|+++ +++.++++. .+++.+|+.+ .++++++||+|++..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~ 101 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGD 101 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEES
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECC
Confidence 578899999999999999999986 6999999999 999887643 3688999987 445568999999965
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+ +.+..++..++..+.++|+|||.++..
T Consensus 102 ~---l~~~~~~~~~l~~~~~~L~~gG~l~~~ 129 (230)
T 3cc8_A 102 V---LEHLFDPWAVIEKVKPYIKQNGVILAS 129 (230)
T ss_dssp C---GGGSSCHHHHHHHTGGGEEEEEEEEEE
T ss_pred h---hhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 4 334456678999999999999998853
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=126.06 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~ 197 (409)
.+|.+|||+|||+|.+++.+++.|+. |+++|+|+ +++.|++++..+++.+ .+.++|+.++. ++ +.||+|++++
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~-~~fD~Ii~dp 288 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLE-GPFHHVLLDP 288 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCC-CCEEEEEECC
T ss_pred cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhc-CCCCEEEECC
Confidence 46899999999999999999998875 99999999 9999999999999875 46699998763 23 4599999987
Q ss_pred ccccccC-------hhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLF-------ENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.. +... ......++..+.++|+|||.++..
T Consensus 289 P~-f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~ 325 (393)
T 4dmg_A 289 PT-LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLS 325 (393)
T ss_dssp CC-CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred Cc-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 43 2211 123467788889999999999844
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-11 Score=120.45 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=90.4
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
.+.......++.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++|+++.+|+. .+++ ..|
T Consensus 193 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p-~~~ 269 (369)
T 3gwz_A 193 QVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIP-DGA 269 (369)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCC-SSC
T ss_pred HHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCC-CCc
Confidence 3444445567789999999999999999984 4569999999 8 99999999999998889999999998 4555 389
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|++..+.+.+. ......+++.+.+.|+|||+++..
T Consensus 270 D~v~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~ 306 (369)
T 3gwz_A 270 DVYLIKHVLHDWD-DDDVVRILRRIATAMKPDSRLLVI 306 (369)
T ss_dssp SEEEEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred eEEEhhhhhccCC-HHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999976543332 223347899999999999998853
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-12 Score=116.30 Aligned_cols=100 Identities=22% Similarity=0.243 Sum_probs=79.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-CceeEEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKVDIIIS 195 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~DvVvs 195 (409)
....++.+|||||||+|.++..+++.+..+|+++|+++ +++.|++++...++.+ ++++.+|+ ...++. .+||+|++
T Consensus 87 l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~-~~~~~~~~~fD~Ii~ 164 (235)
T 1jg1_A 87 ANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDG-SKGFPPKAPYDVIIV 164 (235)
T ss_dssp HTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCG-GGCCGGGCCEEEEEE
T ss_pred cCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCc-ccCCCCCCCccEEEE
Confidence 45678889999999999999999995326999999999 9999999999988866 99999998 333332 45999998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
......+ ...+.+.|+|||+++..
T Consensus 165 ~~~~~~~---------~~~~~~~L~pgG~lvi~ 188 (235)
T 1jg1_A 165 TAGAPKI---------PEPLIEQLKIGGKLIIP 188 (235)
T ss_dssp CSBBSSC---------CHHHHHTEEEEEEEEEE
T ss_pred CCcHHHH---------HHHHHHhcCCCcEEEEE
Confidence 6542222 13567899999998743
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=124.63 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEccccccc--CCCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIE--LPVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~DvV 193 (409)
.++.+|||||||+|.++..+++. +..+|++||+++ +++.|++++... ++ ..+++++.+|+.+.. .+.++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 46689999999999999999986 467999999999 999999988652 44 357999999998752 334789999
Q ss_pred EEecccccccChh-HHHHHHHHHHhcccCCeEEEccC
Q 015306 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 194 vs~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+++.......... ....+++.+.++|+|||+++...
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9975422111111 13688999999999999998653
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=122.73 Aligned_cols=106 Identities=19% Similarity=0.134 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--CC--------CCcEEEEEcccccccCCCCc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--GF--------SNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--~~--------~~~i~~~~~d~~~~~~~~~~ 189 (409)
.++.+|||||||+|.++..+++.+..+|++||+++ +++.|++++ .. ++ ..+++++.+|+.+.....++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 45689999999999999999988777999999999 999999987 33 32 36799999998764211478
Q ss_pred eeEEEEecccccccChhH--HHHHHHHHHhcccCCeEEEcc
Q 015306 190 VDIIISEWMGYFLLFENM--LNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~--~~~~l~~~~~~LkpgG~lip~ 228 (409)
||+|+++...... .... ...+++.+.++|+|||+++..
T Consensus 153 fD~Ii~d~~~~~~-~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVG-PAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEECCCCCCC-cchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9999998643211 1111 267889999999999999864
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=122.30 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH--cCC-CCcEEEEEcccccc-cCCCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~DvVv 194 (409)
..+.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++.. .++ ..+++++.+|+.+. ....++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 35689999999999999999996 678999999999 99999998764 333 35799999998774 33347899999
Q ss_pred EecccccccChh--HHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++.......... ....+++.+.++|+|||+++...
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 975422011001 12578899999999999998653
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.9e-12 Score=119.98 Aligned_cols=105 Identities=19% Similarity=0.053 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||||||+|.++..+++ .+..+++++|+ + +++.|++++...++.++++++.+|+. .+++ .+||+|++..
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p-~~~D~v~~~~ 243 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLP-AGAGGYVLSA 243 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCC-CSCSEEEEES
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCC-CCCcEEEEeh
Confidence 34568999999999999999988 45669999999 8 99999999999998888999999997 3455 3899999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+.+. ......+++++.+.|+|||+++..
T Consensus 244 vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~ 273 (332)
T 3i53_A 244 VLHDWD-DLSAVAILRRCAEAAGSGGVVLVI 273 (332)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred hhccCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 544332 233578999999999999998854
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=122.77 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=77.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEE-EEccccccc--
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITV-LKGKIEEIE-- 184 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~-~~~d~~~~~-- 184 (409)
.+..++.......++.+|||||||||.++..+++.|+.+|+|||+|+ |++.+.+.- .++.. ...++..+.
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~~ 145 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEPV 145 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCGG
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecchh
Confidence 34445554444457889999999999999999999989999999999 998854321 22433 234555544
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++..+||+|+++.. +. .+..++.++.++|||||.++.
T Consensus 146 ~l~~~~fD~v~~d~s---f~---sl~~vL~e~~rvLkpGG~lv~ 183 (291)
T 3hp7_A 146 DFTEGLPSFASIDVS---FI---SLNLILPALAKILVDGGQVVA 183 (291)
T ss_dssp GCTTCCCSEEEECCS---SS---CGGGTHHHHHHHSCTTCEEEE
T ss_pred hCCCCCCCEEEEEee---Hh---hHHHHHHHHHHHcCcCCEEEE
Confidence 34345999998653 22 236788999999999999874
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=126.90 Aligned_cols=106 Identities=21% Similarity=0.191 Sum_probs=87.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----CCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~DvVvs~ 196 (409)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+ +++.|++++..+++.+ ++++++|+.++.. ..++||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 7889999999999999999998 67999999999 9999999999999977 9999999988642 14789999998
Q ss_pred cccccccC------hhHHHHHHHHHHhcccCCeEEEccC
Q 015306 197 WMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 197 ~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+..+.... ......++..+.++|+|||+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 325 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS 325 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 74322211 1345678888999999999988653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=111.69 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=77.7
Q ss_pred hHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015306 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (409)
Q Consensus 104 ~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (409)
+..++.+.+.+... ..++.+|||+|||+|.++..+++.+ +|+|+|+|+ +++. .++++++++|+.+
T Consensus 7 ~~~~~~l~~~l~~~--~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----------~~~~~~~~~d~~~ 72 (170)
T 3q87_B 7 GEDTYTLMDALERE--GLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----------HRGGNLVRADLLC 72 (170)
T ss_dssp CHHHHHHHHHHHHH--TCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----------CSSSCEEECSTTT
T ss_pred CccHHHHHHHHHhh--cCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----------ccCCeEEECChhh
Confidence 34444555554421 2467799999999999999999987 999999999 9877 2458999999988
Q ss_pred ccCCCCceeEEEEecccccccC------hhHHHHHHHHHHhcccCCeEEEc
Q 015306 183 IELPVTKVDIIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 183 ~~~~~~~~DvVvs~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++.++||+|++++....... ......++..+.+.| |||.++.
T Consensus 73 -~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~ 121 (170)
T 3q87_B 73 -SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYL 121 (170)
T ss_dssp -TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEE
T ss_pred -hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEE
Confidence 444589999999864321111 112235666666777 9999874
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=118.79 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecH-H-HHHHH---HHHHHHcCCCCcEEEEEcccccccCC-CCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-Q-MANMA---KQIVEANGFSNVITVLKGKIEEIELP-VTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s-~-~~~~a---~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvV 193 (409)
.++.+|||||||+|.++..+++ .+..+|+|||+| + |++.| ++++...++. ++.++++|+++++.. .+.+|.|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEEE
Confidence 5788999999999999999997 445689999999 6 77776 7777777775 499999999988532 2556666
Q ss_pred EEeccccccc-C-hhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLL-F-ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~-~-~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++.+...... + ......++.++.++|||||.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 6543211110 0 01124678999999999999886
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-12 Score=120.55 Aligned_cols=107 Identities=20% Similarity=0.101 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH---cCCCCcEEEEEcccccccC--CCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA---NGFSNVITVLKGKIEEIEL--PVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~---~~~~~~i~~~~~d~~~~~~--~~~~~DvV 193 (409)
.++.+|||||||+|.++..+++. +..+|++||+++ +++.|++++.. .....+++++.+|+.++.. +.++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 46789999999999999999986 467999999999 99999998742 1223579999999988753 35899999
Q ss_pred EEecccccccChhHH--HHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFENML--NTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lip~ 228 (409)
+++....... ...+ ..+++.+.++|||||+++..
T Consensus 174 i~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~ 209 (304)
T 3bwc_A 174 IIDTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQ 209 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9976432211 1111 57889999999999999854
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-12 Score=123.35 Aligned_cols=109 Identities=18% Similarity=0.145 Sum_probs=86.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
....+.... ..++.+|||+|||+|.+++.+++.+. .+|+|+|+|+ +++.|++++..+++.++++++++|+.+++.+.
T Consensus 206 la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~ 284 (373)
T 3tm4_A 206 IANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV 284 (373)
T ss_dssp HHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC
T ss_pred HHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc
Confidence 334444334 57888999999999999999999764 4899999999 99999999999999778999999999998777
Q ss_pred CceeEEEEeccccccc-C----hhHHHHHHHHHHhcc
Q 015306 188 TKVDIIISEWMGYFLL-F----ENMLNTVLYARDKWL 219 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~-~----~~~~~~~l~~~~~~L 219 (409)
++||+|+++++...-. . +.....+++.+.++|
T Consensus 285 ~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 285 DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp SCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred CCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 8999999987421111 1 122367788888888
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=123.86 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH--cCC-CCcEEEEEccccccc-CCCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEIE-LPVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~~-~~~~~~DvVv 194 (409)
.++.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++.. +++ ..+++++.+|+.+.. ...++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 45689999999999999999986 567999999999 99999998765 233 357999999997742 2347899999
Q ss_pred EecccccccChhHH-HHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLLFENML-NTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~~~~-~~~l~~~~~~LkpgG~lip~ 228 (409)
++............ ..+++.+.++|+|||+++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 98642211111111 68889999999999999854
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-12 Score=114.65 Aligned_cols=91 Identities=23% Similarity=0.291 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
++.+|||||||+|.++..+++. +++|+|+ +++.++++ +++++.+|+.+++++.++||+|++..+
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~-- 111 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTT-- 111 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESC--
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcch--
Confidence 4889999999999999887654 9999999 99998876 378999999998877789999999754
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+..++..++..+.++|+|||.++..
T Consensus 112 -l~~~~~~~~~l~~~~~~L~pgG~l~i~ 138 (219)
T 1vlm_A 112 -ICFVDDPERALKEAYRILKKGGYLIVG 138 (219)
T ss_dssp -GGGSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred -HhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 333356788999999999999998853
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=119.90 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH--cCC-CCcEEEEEcccccc-cCCCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~DvVv 194 (409)
..+++|||||||+|.++..+++. |..+|++||+++ +++.|++++.. +++ .++++++.+|+.+. ....++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 35689999999999999999996 678999999999 99999998754 234 35799999998874 33347899999
Q ss_pred EecccccccChh-HHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+++......... ....+++.+.++|+|||+++...
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 976432111000 12578889999999999998653
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.7e-12 Score=116.46 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCCh----HHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHHH-----------------------cC
Q 015306 122 KDKVVLDVGAGTGI----LSLFCAKA-G----AAHVYAVECSQ-MANMAKQIVEA-----------------------NG 168 (409)
Q Consensus 122 ~~~~VLDlGcG~G~----l~~~la~~-g----~~~V~~vD~s~-~~~~a~~~~~~-----------------------~~ 168 (409)
++.+|||+|||||. +++.+++. | ..+|+|+|+|+ +++.|++.+.. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999997 67777774 4 23899999999 99999986410 00
Q ss_pred -------CCCcEEEEEcccccccCC-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 169 -------FSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 169 -------~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.++|+|.+.|+.+.+++ .++||+|+|..+..++ .......++..+.+.|+|||.++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 113699999999886554 4789999996544333 3345679999999999999999864
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-12 Score=123.95 Aligned_cols=109 Identities=21% Similarity=0.228 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEcccccc-cCCCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEI-ELPVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~~DvVv 194 (409)
.++++|||||||+|.++..+++. +..+|+++|+++ +++.|++++... ++ ..+++++.+|+.+. ....++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 35689999999999999999986 467999999999 999999988643 33 46799999999874 23347899999
Q ss_pred EecccccccChhHH-HHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFENML-NTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~~~-~~~l~~~~~~LkpgG~lip~~ 229 (409)
++............ ..+++.+.++|+|||+++...
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 97643211111111 688899999999999998654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-11 Score=118.45 Aligned_cols=107 Identities=23% Similarity=0.281 Sum_probs=87.1
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
....++.+|||||||+|.++..+++.+ ..+++++|+ + +++.|++++...++.++++++.+|+.+ .++ ..||+|++
T Consensus 179 ~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~ 255 (360)
T 1tw3_A 179 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKADAIIL 255 (360)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEEEEEE
T ss_pred CCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCC-CCccEEEE
Confidence 345678899999999999999999853 569999999 8 999999999999988789999999976 344 45999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+.+.+. ......+++.+.++|+|||+++..
T Consensus 256 ~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~ 287 (360)
T 1tw3_A 256 SFVLLNWP-DHDAVRILTRCAEALEPGGRILIH 287 (360)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccCCC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 76543332 233458899999999999998753
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-12 Score=130.05 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=86.9
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE-EEEcccccccC
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT-VLKGKIEEIEL 185 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~~ 185 (409)
..+.+.+.......++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++ ++..... +...+...+++
T Consensus 93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~ 167 (416)
T 4e2x_A 93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRR 167 (416)
T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhccc
Confidence 34555666666667889999999999999999999876 999999999 99998875 3332111 22344555555
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++++||+|++..+ +.+..++..+++.+.++|||||+++..
T Consensus 168 ~~~~fD~I~~~~v---l~h~~d~~~~l~~~~r~LkpgG~l~i~ 207 (416)
T 4e2x_A 168 TEGPANVIYAANT---LCHIPYVQSVLEGVDALLAPDGVFVFE 207 (416)
T ss_dssp HHCCEEEEEEESC---GGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEEEECCh---HHhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 5689999999655 444468899999999999999999854
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-12 Score=119.92 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH--cCC-CCcEEEEEcccccc-cCCCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~DvVv 194 (409)
.++++|||||||+|.++..+++. +..+|++||+++ +++.|++++.. +++ ..+++++.+|+.+. +...++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 46689999999999999999996 467999999999 99999998765 344 46799999999774 33347899999
Q ss_pred EecccccccCh-hHHHHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++......... .....+++.+.++|+|||+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 208 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 208 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEe
Confidence 97643211100 11246788999999999999864
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-12 Score=121.24 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHH--cC-C-CCcEEEEEcccccc-cCCCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NG-F-SNVITVLKGKIEEI-ELPVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~--~~-~-~~~i~~~~~d~~~~-~~~~~~~DvV 193 (409)
.++++|||||||+|.++..+++. +..+|++||+++ +++.|++++.. .+ + ..+++++.+|+.+. ....++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 45689999999999999999986 567999999999 99999998764 22 2 35799999999874 3335789999
Q ss_pred EEeccccc-ccC-hhH--HHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYF-LLF-ENM--LNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~-l~~-~~~--~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++..... ... ... ...+++.+.++|+|||+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 99864322 001 111 368899999999999999864
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=120.17 Aligned_cols=104 Identities=12% Similarity=0.179 Sum_probs=81.6
Q ss_pred CEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEeccc
Q 015306 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMG 199 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~~~ 199 (409)
.+|||||||+|.++..+++ .+..+|++||+++ +++.|++++.... ..+++++.+|+.++. ++.++||+|+++...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 4999999999999999999 5556999999999 9999999875432 357999999998863 345789999997533
Q ss_pred ccccChh-HHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (409)
....... ....+++.+.++|+|||+++..
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~ 199 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVAN 199 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 2111111 1267899999999999999854
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=119.30 Aligned_cols=106 Identities=19% Similarity=0.161 Sum_probs=86.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
....+ .+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++++++.+|+.+ +++ ++||+|++
T Consensus 164 ~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~ 239 (334)
T 2ip2_A 164 LDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLL 239 (334)
T ss_dssp SCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEE
T ss_pred CCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEE
Confidence 33445 89999999999999999984 4569999999 9 999999998877777789999999987 555 78999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+.+.+ .......+++.+.+.|+|||+++..
T Consensus 240 ~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i~ 271 (334)
T 2ip2_A 240 SRIIGDL-DEAASLRLLGNCREAMAGDGRVVVI 271 (334)
T ss_dssp ESCGGGC-CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred chhccCC-CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7654333 2334458999999999999998854
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-12 Score=126.70 Aligned_cols=111 Identities=15% Similarity=0.050 Sum_probs=88.8
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 194 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVv 194 (409)
...++.+|||+|||+|..+..+++. + ..+|+|+|+++ +++.+++++..+|+. +.++++|+.++. ...++||+|+
T Consensus 98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il 175 (464)
T 3m6w_A 98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVL 175 (464)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEE
T ss_pred CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEE
Confidence 4568899999999999999999984 3 46999999999 999999999999986 999999998875 2348899999
Q ss_pred Eecccccc---cC-h---------------hHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 195 SEWMGYFL---LF-E---------------NMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 195 s~~~~~~l---~~-~---------------~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
+++..... .. . .....++..+.++|||||+++.++++
T Consensus 176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 87542211 00 0 11267888999999999999976654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=120.77 Aligned_cols=100 Identities=11% Similarity=0.173 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-ccC-CCCceeEEEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IEL-PVTKVDIIIS 195 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~~DvVvs 195 (409)
..++.+|||+| |+|.+++.+++.+. .+|+++|+++ +++.|++++..+++. +++++.+|+.+ ++. ..++||+|++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEE
Confidence 34688999999 99999999999765 7999999999 999999999999986 69999999988 543 2368999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEE
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (409)
+++.. . .....++..+.++|||||.+
T Consensus 248 ~~p~~-~---~~~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 248 DPPET-L---EAIRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp CCCSS-H---HHHHHHHHHHHHTBCSTTCE
T ss_pred CCCCc-h---HHHHHHHHHHHHHcccCCeE
Confidence 87421 1 12578899999999999943
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-12 Score=117.26 Aligned_cols=85 Identities=25% Similarity=0.338 Sum_probs=71.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
.+.|.......++.+|||||||+|.++..+++.+. +|+|+|+++ +++.+++++...++.++++++++|+.+++++ +
T Consensus 17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~ 93 (285)
T 1zq9_A 17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--F 93 (285)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--C
T ss_pred HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--h
Confidence 33444445567889999999999999999999855 999999999 9999999987776656799999999987664 7
Q ss_pred eeEEEEecc
Q 015306 190 VDIIISEWM 198 (409)
Q Consensus 190 ~DvVvs~~~ 198 (409)
||+|++++.
T Consensus 94 fD~vv~nlp 102 (285)
T 1zq9_A 94 FDTCVANLP 102 (285)
T ss_dssp CSEEEEECC
T ss_pred hcEEEEecC
Confidence 999999864
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-12 Score=117.76 Aligned_cols=97 Identities=9% Similarity=0.104 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cC-CCCcee
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---EL-PVTKVD 191 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-----g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~-~~~~~D 191 (409)
++.+|||||||+|..+..+++. +..+|+|||+++ +++.|+ ++.++++++++|+.+. +. ...+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCCC
Confidence 5679999999999999999986 356999999999 998887 2235699999999884 43 324799
Q ss_pred EEEEecccccccChhHHHHHHHHHHh-cccCCeEEEccCC
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDK-WLVDDGIVLPDKA 230 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~-~LkpgG~lip~~~ 230 (409)
+|+++.. + .....++.++.+ +|||||+++....
T Consensus 155 ~I~~d~~-----~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 155 LIFIDNA-----H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEEESS-----C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEEECCc-----h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9998653 1 245678888887 9999999997654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=112.44 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=78.4
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHH-cCC------CEEEEEecHH-HHHHHHHHHHHcCC----CCcEEEEEcccccccCC
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAK-AGA------AHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELP 186 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~-~g~------~~V~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~ 186 (409)
...++.+|||||||+|.++..+++ .+. .+|+++|+++ +++.|++++...++ ..+++++.+|+.+ .++
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~ 159 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYP 159 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCG
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCC
Confidence 356788999999999999999998 443 5999999999 99999999887651 1459999999987 333
Q ss_pred -CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 -VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 -~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.++||+|++...... +...+.+.|||||+++.
T Consensus 160 ~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lvi 192 (227)
T 1r18_A 160 PNAPYNAIHVGAAAPD---------TPTELINQLASGGRLIV 192 (227)
T ss_dssp GGCSEEEEEECSCBSS---------CCHHHHHTEEEEEEEEE
T ss_pred cCCCccEEEECCchHH---------HHHHHHHHhcCCCEEEE
Confidence 378999998654222 12567799999999874
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=108.98 Aligned_cols=90 Identities=20% Similarity=0.124 Sum_probs=71.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++. +++++++|+.+++ ++||+|+++++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~---~~~D~v~~~~p 119 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMNPP 119 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC---CCeeEEEECCC
Confidence 457889999999999999999998877999999999 9999998864 4899999999864 78999999876
Q ss_pred cccccChhHHHHHHHHHHhcc
Q 015306 199 GYFLLFENMLNTVLYARDKWL 219 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~L 219 (409)
.+.... .....++..+.+.|
T Consensus 120 ~~~~~~-~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 120 FGSVVK-HSDRAFIDKAFETS 139 (200)
T ss_dssp C--------CHHHHHHHHHHE
T ss_pred chhccC-chhHHHHHHHHHhc
Confidence 444332 22346777777777
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=130.35 Aligned_cols=99 Identities=24% Similarity=0.242 Sum_probs=77.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~ 197 (409)
..+.+|||||||.|.++..+|+.|+ .|+|||+++ +++.|+..+...+.. +|++.+++++++. +.+++||+|+|.-
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECc
Confidence 4567999999999999999999988 899999999 999999999888753 3999999999983 4557999999965
Q ss_pred ccccccChhHHHHH--HHHHHhcccCCeE
Q 015306 198 MGYFLLFENMLNTV--LYARDKWLVDDGI 224 (409)
Q Consensus 198 ~~~~l~~~~~~~~~--l~~~~~~LkpgG~ 224 (409)
+.+++ .++..+ +.++.+.|+++|.
T Consensus 143 ~~ehv---~~~~~~~~~~~~~~tl~~~~~ 168 (569)
T 4azs_A 143 VFHHI---VHLHGIDEVKRLLSRLADVTQ 168 (569)
T ss_dssp CHHHH---HHHHCHHHHHHHHHHHHHHSS
T ss_pred chhcC---CCHHHHHHHHHHHHHhccccc
Confidence 54433 333322 2234455666654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.8e-12 Score=124.33 Aligned_cols=113 Identities=19% Similarity=0.071 Sum_probs=89.6
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 194 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVv 194 (409)
...++.+|||+|||+|..+..+|+. +..+|+|+|+++ +++.+++++..+|+.+ +.++++|+.++. ...++||+|+
T Consensus 102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~l~~~~~~~FD~Il 180 (456)
T 3m4x_A 102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAELVPHFSGFFDRIV 180 (456)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHHHHHHHTTCEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhhhccccCCEEE
Confidence 4578899999999999999999984 356999999999 9999999999999965 999999998875 2247899999
Q ss_pred Eecccccc---cChh----------------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 195 SEWMGYFL---LFEN----------------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 195 s~~~~~~l---~~~~----------------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
+++..+.. ...+ ....++..+.++|||||+++.+++++
T Consensus 181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 98642211 1111 12377888899999999999766553
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=115.44 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEccccccc-CCCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~DvVv 194 (409)
.++++|||||||+|.++..+++. +..+|+++|+++ +++.|++++...+ + ..+++++.+|+.+.. ...++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 46689999999999999999986 467999999999 9999999876432 2 357999999998753 2247899999
Q ss_pred EecccccccChhHH--HHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFENML--NTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lip~~ 229 (409)
++...... ....+ ..+++.+.++|+|||+++...
T Consensus 157 ~d~~~~~~-~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIG-PAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTT-GGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCC-cchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 97643221 11222 688999999999999998653
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=107.04 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=77.6
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-CC-CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc-------
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE------- 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~-~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 184 (409)
+.......++.+|||+|||+|.++..+++. |. .+|+++|++++++ . .+++++.+|+.+.+
T Consensus 14 ~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----------~-~~~~~~~~d~~~~~~~~~~~~ 82 (180)
T 1ej0_A 14 QQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----------I-VGVDFLQGDFRDELVMKALLE 82 (180)
T ss_dssp HHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----------C-TTEEEEESCTTSHHHHHHHHH
T ss_pred HHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----------c-CcEEEEEcccccchhhhhhhc
Confidence 333344678889999999999999999996 53 6999999998211 1 35999999998876
Q ss_pred -CCCCceeEEEEecccccccCh--hH------HHHHHHHHHhcccCCeEEEc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFE--NM------LNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~--~~------~~~~l~~~~~~LkpgG~lip 227 (409)
++.++||+|+++...+..... .. ...++..+.++|+|||.++.
T Consensus 83 ~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 134 (180)
T 1ej0_A 83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 566799999997653333221 11 15788999999999999884
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=122.92 Aligned_cols=109 Identities=14% Similarity=0.041 Sum_probs=87.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEec
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEW 197 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~DvVvs~~ 197 (409)
++.+|||+|||+|..+..+++. + ..+|+|+|+++ +++.+++++..+|+.+ ++++++|+.++.. ..++||+|++++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHhhhhccccCCEEEECC
Confidence 8899999999999999999984 3 46999999999 9999999999999864 9999999988753 347899999975
Q ss_pred ccccc---c-Ch---------------hHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 198 MGYFL---L-FE---------------NMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 198 ~~~~l---~-~~---------------~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
..+.. . +. .....++..+.++|||||+++.++++
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 42211 1 10 11246788889999999999976554
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=121.31 Aligned_cols=113 Identities=14% Similarity=0.084 Sum_probs=89.4
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~Dv 192 (409)
....++.+|||+|||+|..+..+++. +. .+|+|+|+++ +++.+++++...|+.+ ++++++|+.++. +++++||+
T Consensus 255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~fD~ 333 (450)
T 2yxl_A 255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI-VKPLVKDARKAPEIIGEEVADK 333 (450)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCTTCCSSSSCSSCEEE
T ss_pred cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEEEcChhhcchhhccCCCCE
Confidence 34578899999999999999999984 33 6999999999 9999999999999864 999999998876 44478999
Q ss_pred EEEecccccc---cChhH----------------HHHHHHHHHhcccCCeEEEccCCc
Q 015306 193 IISEWMGYFL---LFENM----------------LNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 193 Vvs~~~~~~l---~~~~~----------------~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
|++++..+.. ...++ ...++..+.++|||||+++..+++
T Consensus 334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9987532221 11111 157788999999999999865544
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=109.63 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=73.5
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C--CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc----------
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G--AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE---------- 184 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g--~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------- 184 (409)
....++.+|||||||+|.++..+++. + ..+|+|+|+|++. .. .+++++++|+.+..
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~-~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 18 LFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PI-PNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp CCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CC-TTCEEEECCTTTTSSCCC------
T ss_pred CCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CC-CCceEEEccccchhhhhhcccccc
Confidence 33567889999999999999999985 4 4699999999921 12 34899999998875
Q ss_pred ---------------CCCCceeEEEEecccccccC-hhH-------HHHHHHHHHhcccCCeEEEc
Q 015306 185 ---------------LPVTKVDIIISEWMGYFLLF-ENM-------LNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ---------------~~~~~~DvVvs~~~~~~l~~-~~~-------~~~~l~~~~~~LkpgG~lip 227 (409)
++.++||+|+++...+.... ..+ ...++..+.++|||||.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~ 152 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV 152 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 45578999999764332110 011 12477888999999999884
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-12 Score=117.79 Aligned_cols=106 Identities=17% Similarity=0.181 Sum_probs=71.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEE-Eccccccc---
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL-KGKIEEIE--- 184 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~--- 184 (409)
+.++|.......++.+|||||||+|.++..+++.|+.+|+|+|+|+ |++.|+++... +... ..++..+.
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~~~~~~ 98 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRNAVLAD 98 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGGCCGGG
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEEeCHhH
Confidence 4444554444456789999999999999999999878999999999 99987764321 2221 11222211
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++...+|.+.++.+... +..++.++.++|||||.++.
T Consensus 99 ~~~~~~d~~~~D~v~~~------l~~~l~~i~rvLkpgG~lv~ 135 (232)
T 3opn_A 99 FEQGRPSFTSIDVSFIS------LDLILPPLYEILEKNGEVAA 135 (232)
T ss_dssp CCSCCCSEEEECCSSSC------GGGTHHHHHHHSCTTCEEEE
T ss_pred cCcCCCCEEEEEEEhhh------HHHHHHHHHHhccCCCEEEE
Confidence 22123565555432111 25788999999999999885
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=113.71 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++. .++.++.+|+.++++++++||+|++...
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 57889999999999999999996 345999999999 999998764 2478999999998877789999998542
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+..+.++|||||.++.
T Consensus 158 ----------~~~l~~~~~~L~pgG~l~~ 176 (269)
T 1p91_A 158 ----------PCKAEELARVVKPGGWVIT 176 (269)
T ss_dssp ----------CCCHHHHHHHEEEEEEEEE
T ss_pred ----------hhhHHHHHHhcCCCcEEEE
Confidence 1236778899999999884
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=107.51 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=74.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCC-----
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP----- 186 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----- 186 (409)
+.+.+.....++.+|||||||+|.++..+++. ..+|+|+|++++ ..+ .+++++++|+.+....
T Consensus 15 ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~----------~~~-~~v~~~~~D~~~~~~~~~~~~ 82 (191)
T 3dou_A 15 FLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEM----------EEI-AGVRFIRCDIFKETIFDDIDR 82 (191)
T ss_dssp HHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCC----------CCC-TTCEEEECCTTSSSHHHHHHH
T ss_pred HHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccc----------ccC-CCeEEEEccccCHHHHHHHHH
Confidence 33333344578899999999999999999998 559999999982 112 3589999999876421
Q ss_pred ------CCceeEEEEecccccccC--------hhHHHHHHHHHHhcccCCeEEE
Q 015306 187 ------VTKVDIIISEWMGYFLLF--------ENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 ------~~~~DvVvs~~~~~~l~~--------~~~~~~~l~~~~~~LkpgG~li 226 (409)
.++||+|++++....... ......++..+.++|||||.++
T Consensus 83 ~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv 136 (191)
T 3dou_A 83 ALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVL 136 (191)
T ss_dssp HHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 148999999864322111 1123567778889999999988
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=118.63 Aligned_cols=117 Identities=14% Similarity=0.146 Sum_probs=93.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCC---------------------------------------CEE
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------------AHV 148 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~---------------------------------------~~V 148 (409)
+.+..+|.......++.+|||+|||+|.+++.++..+. .+|
T Consensus 181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 34666666667777889999999999999999988542 479
Q ss_pred EEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc--ccChhHHHHHHHHHHhcccC--Ce
Q 015306 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF--LLFENMLNTVLYARDKWLVD--DG 223 (409)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~--l~~~~~~~~~l~~~~~~Lkp--gG 223 (409)
+|+|+++ +++.|++++..+++.+.|++.++|+.++..+ .+||+|++++. |. +.....+..+...+.+.||+ ||
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPP-yg~rl~~~~~l~~ly~~lg~~lk~~~g~ 338 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPP-YGERLEDKDSVKQLYKELGYAFRKLKNW 338 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCC-CCCSHHHHHHHHHHHHHHHHHHHTSBSC
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCC-CcCccCCHHHHHHHHHHHHHHHhhCCCC
Confidence 9999999 9999999999999987899999999998765 69999999974 32 22234566777777777775 55
Q ss_pred EEE
Q 015306 224 IVL 226 (409)
Q Consensus 224 ~li 226 (409)
.+.
T Consensus 339 ~~~ 341 (385)
T 3ldu_A 339 SYY 341 (385)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.5e-11 Score=116.04 Aligned_cols=118 Identities=15% Similarity=0.219 Sum_probs=94.3
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCC---------------------------------------CEE
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------------AHV 148 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~---------------------------------------~~V 148 (409)
+.+..++.......++..|||++||+|.+++.++..+. .+|
T Consensus 180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 34566666666777889999999999999999998533 359
Q ss_pred EEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc-cccccChhHHHHHHHHHHhcccC--CeE
Q 015306 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM-GYFLLFENMLNTVLYARDKWLVD--DGI 224 (409)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~-~~~l~~~~~~~~~l~~~~~~Lkp--gG~ 224 (409)
+|+|+++ +++.|++++..+|+.+.++++++|+.++..+ .+||+|++++. +.-+..+..+..+...+.+.||+ ||.
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~ 338 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS 338 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 9999999 9999999999999988899999999998766 68999999974 22233345677777777777775 665
Q ss_pred EE
Q 015306 225 VL 226 (409)
Q Consensus 225 li 226 (409)
+.
T Consensus 339 ~~ 340 (384)
T 3ldg_A 339 QF 340 (384)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.5e-11 Score=106.98 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||||||+|.+++.+. +..+|+|+|+++ +++.+++++..++. ...+..+|....+++ +++|+|++..+.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~-~~~DvvLllk~l 178 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPA-EAGDLALIFKLL 178 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCC-CBCSEEEEESCH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCC-CCcchHHHHHHH
Confidence 567899999999999999888 777999999999 99999999998884 389999999888777 799999997665
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+++.+...- ..+ ++...|+++|++|
T Consensus 179 h~LE~q~~~-~~~-~ll~aL~~~~vvV 203 (253)
T 3frh_A 179 PLLEREQAG-SAM-ALLQSLNTPRMAV 203 (253)
T ss_dssp HHHHHHSTT-HHH-HHHHHCBCSEEEE
T ss_pred HHhhhhchh-hHH-HHHHHhcCCCEEE
Confidence 656443322 233 5567899999987
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=7.2e-11 Score=116.86 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=79.7
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||+|||+|.+++.+++. ..+|+|+|+|+ +++.|++++..+++. ++++.+|+.++.. .+||+|++++.
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~--~~fD~Vv~dPP 362 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV--KGFDTVIVDPP 362 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC--TTCSEEEECCC
T ss_pred cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc--cCCCEEEEcCC
Confidence 467889999999999999999997 45999999999 999999999999985 9999999998743 38999999874
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
-. +..+.+++.+. .|+|+|+++.+
T Consensus 363 r~-----g~~~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 363 RA-----GLHPRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp TT-----CSCHHHHHHHH-HHCCSEEEEEE
T ss_pred cc-----chHHHHHHHHH-hcCCCcEEEEE
Confidence 22 12234555553 48999998754
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-11 Score=117.98 Aligned_cols=117 Identities=13% Similarity=0.140 Sum_probs=92.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCC---------------------------------------CEE
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------------AHV 148 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~---------------------------------------~~V 148 (409)
+.+..++.......++..|||++||+|.+++.++..+. .+|
T Consensus 187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 34556666666777889999999999999999998533 359
Q ss_pred EEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccccc--cChhHHHHHHHHHHhcccC--Ce
Q 015306 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL--LFENMLNTVLYARDKWLVD--DG 223 (409)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l--~~~~~~~~~l~~~~~~Lkp--gG 223 (409)
+|+|+++ +++.|++++..+|+.++++++++|+.+++.+ .+||+|+++++ |.. .....+..+...+.+.||+ ||
T Consensus 267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPP-Yg~rl~~~~~l~~ly~~lg~~lk~~~g~ 344 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPP-YGERLEDEEAVRQLYREMGIVYKRMPTW 344 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCC-CCCSHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCC-CccccCCchhHHHHHHHHHHHHhcCCCC
Confidence 9999999 9999999999999988899999999998766 69999999974 322 2224456666666666665 66
Q ss_pred EEE
Q 015306 224 IVL 226 (409)
Q Consensus 224 ~li 226 (409)
.+.
T Consensus 345 ~~~ 347 (393)
T 3k0b_A 345 SVY 347 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-11 Score=106.23 Aligned_cols=98 Identities=24% Similarity=0.258 Sum_probs=72.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CC---------CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEE-Eccccccc-
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GA---------AHVYAVECSQ-MANMAKQIVEANGFSNVITVL-KGKIEEIE- 184 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~---------~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~- 184 (409)
..+.++.+|||||||+|.++..+++. |. .+|+|+|+++ . .+ .+++++ .+|+.+..
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~ 85 (196)
T 2nyu_A 18 QILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRT 85 (196)
T ss_dssp CCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHH
T ss_pred CCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHH
Confidence 34567899999999999999999995 64 7999999998 3 12 348888 88887653
Q ss_pred -------CCCCceeEEEEecccccccCh-hHH-------HHHHHHHHhcccCCeEEEc
Q 015306 185 -------LPVTKVDIIISEWMGYFLLFE-NML-------NTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -------~~~~~~DvVvs~~~~~~l~~~-~~~-------~~~l~~~~~~LkpgG~lip 227 (409)
++.++||+|+++...+...+. .+. ..++..+.++|||||.++.
T Consensus 86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 143 (196)
T 2nyu_A 86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLC 143 (196)
T ss_dssp HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 234689999997533322111 111 4778889999999999984
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.8e-11 Score=113.54 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=65.1
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
+.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.|++++..+++ ++++++++|+.++++ ++||+
T Consensus 34 i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~--~~~D~ 109 (299)
T 2h1r_A 34 IIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF--PKFDV 109 (299)
T ss_dssp HHHHHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC--CCCSE
T ss_pred HHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc--ccCCE
Confidence 3333445788999999999999999999984 4999999999 99999999988777 459999999988765 48999
Q ss_pred EEEecc
Q 015306 193 IISEWM 198 (409)
Q Consensus 193 Vvs~~~ 198 (409)
|++++.
T Consensus 110 Vv~n~p 115 (299)
T 2h1r_A 110 CTANIP 115 (299)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 999864
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.3e-11 Score=118.99 Aligned_cols=111 Identities=17% Similarity=0.054 Sum_probs=88.2
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIII 194 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVv 194 (409)
...++.+|||+|||+|..+..+++.+ ..+|+|+|+++ +++.+++++..+++. ++++++|+.++. ++.++||+|+
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl 320 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRIL 320 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEEEE
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhcccCCCCEEE
Confidence 45788999999999999999999954 36999999999 999999999998874 789999998875 4457899999
Q ss_pred Eecccccc---cChh---------H-------HHHHHHHHHhcccCCeEEEccCCc
Q 015306 195 SEWMGYFL---LFEN---------M-------LNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 195 s~~~~~~l---~~~~---------~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
+++..+.. ...+ . ...++..+.++|||||+++.++++
T Consensus 321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 97542211 1111 1 147788899999999999966544
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-11 Score=117.16 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=78.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCC------CChHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAG------TGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK 179 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG------~G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (409)
.|.+.+... ..++.+||||||| +|..++.+++ . +..+|+|||+|+ |.. ...+++++++|
T Consensus 205 ~Ye~lL~~l--~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GD 272 (419)
T 3sso_A 205 HYDRHFRDY--RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGD 272 (419)
T ss_dssp HHHHHHGGG--TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECC
T ss_pred HHHHHHHhh--cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEec
Confidence 444444422 2467899999999 6766776666 3 566999999999 831 12569999999
Q ss_pred cccccCC------CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 180 IEEIELP------VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 180 ~~~~~~~------~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.++++. .++||+|+++.. ++......++.++.++|||||+++...
T Consensus 273 a~dlpf~~~l~~~d~sFDlVisdgs----H~~~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 273 QNDAEFLDRIARRYGPFDIVIDDGS----HINAHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp TTCHHHHHHHHHHHCCEEEEEECSC----CCHHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ccccchhhhhhcccCCccEEEECCc----ccchhHHHHHHHHHHhcCCCeEEEEEe
Confidence 9997755 589999999642 233567788999999999999998643
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=116.40 Aligned_cols=112 Identities=21% Similarity=0.109 Sum_probs=86.2
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc--
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-- 183 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-- 183 (409)
++.+.+.+.......++.+|||+|||+|.+++.+++. ..+|+|+|+|+ +++.|++++..+++. +++++++|+.+.
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVT 348 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCS
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhh
Confidence 4455555555455567889999999999999999998 56999999999 999999999999986 599999999883
Q ss_pred --cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 184 --ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 184 --~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++.++||+|++++.-..+ ..+++.+. -++|+++++.
T Consensus 349 ~~~~~~~~fD~Vv~dPPr~g~------~~~~~~l~-~~~p~~ivyv 387 (433)
T 1uwv_A 349 KQPWAKNGFDKVLLDPARAGA------AGVMQQII-KLEPIRIVYV 387 (433)
T ss_dssp SSGGGTTCCSEEEECCCTTCC------HHHHHHHH-HHCCSEEEEE
T ss_pred hhhhhcCCCCEEEECCCCccH------HHHHHHHH-hcCCCeEEEE
Confidence 2345689999998753222 13444443 3688887764
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-11 Score=118.47 Aligned_cols=101 Identities=13% Similarity=0.025 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcccccccC-C-CCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIEL-P-VTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~-~-~~~~DvVv 194 (409)
.++.+|||++||+|.+++.+++. |+.+|+++|+++ +++.+++|++.|++.++ ++++++|+.++.. . .++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 46789999999999999999984 668999999999 99999999999999887 9999999977532 1 36899999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++.+ ....++..+.++|+|||+++..
T Consensus 131 lDP~g-------~~~~~l~~a~~~Lk~gGll~~t 157 (392)
T 3axs_A 131 LDPFG-------TPVPFIESVALSMKRGGILSLT 157 (392)
T ss_dssp ECCSS-------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCc-------CHHHHHHHHHHHhCCCCEEEEE
Confidence 98731 2235777778899999987643
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-11 Score=109.68 Aligned_cols=101 Identities=10% Similarity=0.004 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.+..+|||||||+|.+++.++.. +..+|+|+|+++ +++.+++++..+|+. .++...|...-+++ +++|++++..+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p~-~~~DvaL~lkt 207 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRLD-EPADVTLLLKT 207 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCCC-SCCSEEEETTC
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCCC-CCcchHHHHHH
Confidence 45779999999999999999885 788999999999 999999999999986 78888888776655 89999999766
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+++..+.. ...+ .+...|+++|++|
T Consensus 208 i~~Le~q~k-g~g~-~ll~aL~~~~vvV 233 (281)
T 3lcv_B 208 LPCLETQQR-GSGW-EVIDIVNSPNIVV 233 (281)
T ss_dssp HHHHHHHST-THHH-HHHHHSSCSEEEE
T ss_pred HHHhhhhhh-HHHH-HHHHHhCCCCEEE
Confidence 555533222 1333 6778899999988
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-12 Score=118.47 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=73.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHcCCCCcEEEE--EcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV-EANGFSNVITVL--KGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~-~~~~~~~~i~~~--~~d~~~~~~~~~~~DvVv 194 (409)
....++.+|||||||+|.++..+++. .+|+|||+++++..+++.. .......+++++ ++|+.+++ +++||+|+
T Consensus 78 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vv 153 (276)
T 2wa2_A 78 GGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVL 153 (276)
T ss_dssp TSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEE
T ss_pred CCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEE
Confidence 44568899999999999999999998 5899999999322222110 001111258899 99999865 47999999
Q ss_pred EecccccccCh-hHH---HHHHHHHHhcccCCe--EEEc
Q 015306 195 SEWMGYFLLFE-NML---NTVLYARDKWLVDDG--IVLP 227 (409)
Q Consensus 195 s~~~~~~l~~~-~~~---~~~l~~~~~~LkpgG--~lip 227 (409)
|+.. +..... .+. ..++..+.++||||| .++.
T Consensus 154 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 154 CDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred ECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 9865 322221 111 136788889999999 8874
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-12 Score=117.84 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=73.1
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHcCCCCcEEEE--EcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV-EANGFSNVITVL--KGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~-~~~~~~~~i~~~--~~d~~~~~~~~~~~DvVv 194 (409)
....++.+|||||||+|.++..+++. .+|+|||+++++..+++.. .......++.++ ++|+.+++ +++||+|+
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~ 145 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIM 145 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEE
Confidence 44568899999999999999999998 5899999999322221110 000111158899 89998865 47999999
Q ss_pred EecccccccCh-hHHH---HHHHHHHhcccCCe--EEEc
Q 015306 195 SEWMGYFLLFE-NMLN---TVLYARDKWLVDDG--IVLP 227 (409)
Q Consensus 195 s~~~~~~l~~~-~~~~---~~l~~~~~~LkpgG--~lip 227 (409)
|+.. +...+. .+.. .++..+.++||||| .++.
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 9865 332221 1111 37788889999999 8774
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.4e-11 Score=109.36 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=84.6
Q ss_pred HHHHHHHHHhccCC-CCCCEEEEEcCCC---ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc
Q 015306 107 TKSYQNVIYQNKFL-FKDKVVLDVGAGT---GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (409)
Q Consensus 107 ~~~~~~~l~~~~~~-~~~~~VLDlGcG~---G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (409)
+..|.......+.. ....+|||||||+ |.+...+.+ .+..+|++||.|+ |++.|++++...+ ..+++++++|+
T Consensus 62 nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~ 140 (277)
T 3giw_A 62 NRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADM 140 (277)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCT
T ss_pred HHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecc
Confidence 34444443333322 2447899999997 444444443 4566999999999 9999999886543 24699999999
Q ss_pred ccccC----C--CCcee-----EEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 181 EEIEL----P--VTKVD-----IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 181 ~~~~~----~--~~~~D-----vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.++.. + .+.|| .|+++.+.+++.....+..++..+.+.|+|||+++.+
T Consensus 141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls 199 (277)
T 3giw_A 141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMS 199 (277)
T ss_dssp TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEE
T ss_pred cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEE
Confidence 88531 1 13344 5777776666655555778999999999999999864
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-11 Score=116.27 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=80.8
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
+.......++.+|||||||+|.++..+++. +..+++++|+++++. +++....++.++++++.+|+. .+++ +||+
T Consensus 176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~ 250 (348)
T 3lst_A 176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--HADV 250 (348)
T ss_dssp HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--CCSE
T ss_pred HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCCCCCeEEEecCCC-CCCC--CCcE
Confidence 333345567889999999999999999984 456899999976443 333333456678999999997 3344 8999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|++..+.+.+. ......+++++.++|||||+++..
T Consensus 251 v~~~~vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i~ 285 (348)
T 3lst_A 251 HVLKRILHNWG-DEDSVRILTNCRRVMPAHGRVLVI 285 (348)
T ss_dssp EEEESCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred EEEehhccCCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99976543332 223368999999999999998853
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-11 Score=112.72 Aligned_cols=96 Identities=17% Similarity=0.020 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH--cCC-CCcEEEEEcccccccCCCCceeEEEEe
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
..+++|||||||+|.++..+++.+ .+|+++|+++ +++.|++++.. .++ ..+++++.+|..++. ++||+|+++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 356899999999999999998886 8999999999 99999886532 112 257999999998764 789999986
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.. ++..+++.+.+.|+|||+++..
T Consensus 147 ~~--------dp~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 147 QE--------PDIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp SC--------CCHHHHHHHHTTEEEEEEEEEE
T ss_pred CC--------ChHHHHHHHHHhcCCCcEEEEE
Confidence 32 1224888999999999999853
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.8e-11 Score=115.20 Aligned_cols=98 Identities=21% Similarity=0.158 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc---------------CCCCcEEEEEccccccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN---------------GFSNVITVLKGKIEEIE 184 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~---------------~~~~~i~~~~~d~~~~~ 184 (409)
++.+|||+|||+|.+++.+++. |+.+|+++|+++ +++.+++|+..+ ++.+ ++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHHH
Confidence 6889999999999999999995 777899999999 999999999999 8865 999999998764
Q ss_pred CC-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 LP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.. .++||+|+.++.+ ....+++.+.+.||+||+++.
T Consensus 126 ~~~~~~fD~I~lDP~~-------~~~~~l~~a~~~lk~gG~l~v 162 (378)
T 2dul_A 126 AERHRYFHFIDLDPFG-------SPMEFLDTALRSAKRRGILGV 162 (378)
T ss_dssp HHSTTCEEEEEECCSS-------CCHHHHHHHHHHEEEEEEEEE
T ss_pred HhccCCCCEEEeCCCC-------CHHHHHHHHHHhcCCCCEEEE
Confidence 21 3689999987642 124677778899999998764
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.8e-11 Score=105.49 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=71.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
..++.+|||||||+|.++..++ .+|+|+|+++. +++++.+|+.++++++++||+|++..+
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~- 124 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLS- 124 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESC-
T ss_pred cCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehh-
Confidence 3577899999999999988772 58999999982 367899999998887789999999654
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++ ..+..++..+.++|+|||.++..
T Consensus 125 --l~~-~~~~~~l~~~~~~L~~gG~l~i~ 150 (215)
T 2zfu_A 125 --LMG-TNIRDFLEEANRVLKPGGLLKVA 150 (215)
T ss_dssp --CCS-SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred --ccc-cCHHHHHHHHHHhCCCCeEEEEE
Confidence 333 56788999999999999998854
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.1e-11 Score=112.81 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=71.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEec----HH-HHHHHHHHHHHcCCCCcEEEEEc-ccccccCCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC----SQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~----s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D 191 (409)
....++.+|||||||+|.++..+++. .+|+|||+ ++ +++.+. ....+. ++++++++ |+.+++ .++||
T Consensus 78 ~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l~--~~~fD 150 (305)
T 2p41_A 78 NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFIP--PERCD 150 (305)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTSC--CCCCS
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccCC--cCCCC
Confidence 44567899999999999999999998 47999999 45 432211 011111 46999999 888764 47899
Q ss_pred EEEEecccccccChhHH---HHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENML---NTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~---~~~l~~~~~~LkpgG~lip 227 (409)
+|+|++.........+. ..++..+.++|||||.++.
T Consensus 151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 99998653311111111 1467778899999998874
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3e-10 Score=106.70 Aligned_cols=85 Identities=28% Similarity=0.430 Sum_probs=71.3
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
+.+.|.......++.+|||||||+|.++..+++. ..+|+|+|+++ +++.+++++... ++++++++|+.+++++..
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGGGS
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCcccC
Confidence 3444444456678899999999999999999998 45999999999 999999998732 459999999999887766
Q ss_pred ceeEEEEecc
Q 015306 189 KVDIIISEWM 198 (409)
Q Consensus 189 ~~DvVvs~~~ 198 (409)
+||+|++++.
T Consensus 114 ~fD~Iv~NlP 123 (295)
T 3gru_A 114 DFNKVVANLP 123 (295)
T ss_dssp CCSEEEEECC
T ss_pred CccEEEEeCc
Confidence 8999999863
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-10 Score=102.49 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=67.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV- 187 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~- 187 (409)
+.+.+.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++... ++++++++|+.+++++.
T Consensus 18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~~ 93 (244)
T 1qam_A 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN 93 (244)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcccC
Confidence 44455555666788999999999999999999986 5999999999 999999887532 46999999999988763
Q ss_pred CceeEEEEecc
Q 015306 188 TKVDIIISEWM 198 (409)
Q Consensus 188 ~~~DvVvs~~~ 198 (409)
..| .|++++.
T Consensus 94 ~~~-~vv~nlP 103 (244)
T 1qam_A 94 QSY-KIFGNIP 103 (244)
T ss_dssp CCC-EEEEECC
T ss_pred CCe-EEEEeCC
Confidence 345 5777753
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-10 Score=109.98 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCC------CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGA------AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~------~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
.++.+|||+|||+|.++..+++... .+|+|+|+++ +++.|+.++...++ ++.++++|..... ..++||+|
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~-~~~~fD~I 205 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-LVDPVDVV 205 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-CCCCEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc-ccCCccEE
Confidence 4678999999999999999988531 5899999999 99999999988887 3889999987643 34789999
Q ss_pred EEecccccccChh---------------HHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFEN---------------MLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~---------------~~~~~l~~~~~~LkpgG~lip 227 (409)
+++++........ ....++..+.+.|+|||+++.
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~ 254 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF 254 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEE
Confidence 9997532221111 112578888899999998763
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.9e-10 Score=105.17 Aligned_cols=111 Identities=11% Similarity=-0.012 Sum_probs=84.1
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC---CceeE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV---TKVDI 192 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~Dv 192 (409)
...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++..+|+. +++++++|+.++.... .+||.
T Consensus 99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~fD~ 177 (309)
T 2b9e_A 99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHY 177 (309)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccccccCCCCE
Confidence 4578899999999999999999983 457999999999 999999999999985 4999999998875321 57999
Q ss_pred EEEecccccc----cC----------hhH-------HHHHHHHHHhcccCCeEEEccCCc
Q 015306 193 IISEWMGYFL----LF----------ENM-------LNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 193 Vvs~~~~~~l----~~----------~~~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
|++++..... .+ ... ...++....++|+ ||+++.++++
T Consensus 178 Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 178 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred EEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 9997532211 10 001 1246777777887 9988865554
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=111.91 Aligned_cols=108 Identities=17% Similarity=0.089 Sum_probs=78.9
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-- 184 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 184 (409)
+.+...+...... .+.+|||+|||+|.+++.+|+. +.+|+|+|+++ +++.|++++..+++. +++++.+|+.++.
T Consensus 200 ~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~~~~~ 276 (369)
T 3bt7_A 200 IQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQA 276 (369)
T ss_dssp HHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHHHHHH
T ss_pred HHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHHHH
Confidence 3344444433332 3678999999999999999885 56999999999 999999999999995 5999999998753
Q ss_pred CCC--------------CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 LPV--------------TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~~~--------------~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.. .+||+|+.++.-..+ . ..+.+.|+++|.++.
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~-----~----~~~~~~l~~~g~ivy 324 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGL-----D----SETEKMVQAYPRILY 324 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC-----C----HHHHHHHTTSSEEEE
T ss_pred HhhccccccccccccccCCCCEEEECcCcccc-----H----HHHHHHHhCCCEEEE
Confidence 221 379999998742211 1 223355668887763
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.8e-10 Score=109.14 Aligned_cols=97 Identities=19% Similarity=0.224 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||||||+|.++..+++ .+..+++++|+ + +++.|++. .+++++.+|+.+ +++.+ |+|++..
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~~--D~v~~~~ 269 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVPKG--DAIFIKW 269 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCCC--SEEEEES
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCCCC--CEEEEec
Confidence 55678999999999999999998 45669999999 7 88776532 469999999987 56633 9999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+.+ .......+++++++.|||||+++..
T Consensus 270 vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i~ 299 (368)
T 3reo_A 270 ICHDW-SDEHCLKLLKNCYAALPDHGKVIVA 299 (368)
T ss_dssp CGGGB-CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hhhcC-CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 54433 2344568899999999999998754
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-10 Score=111.79 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=75.1
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.| .+++++++|+.+.... ++||+|+
T Consensus 35 ~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~~-~~fD~Ii 103 (421)
T 2ih2_A 35 AEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPG-EAFDLIL 103 (421)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCS-SCEEEEE
T ss_pred hccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCcc-CCCCEEE
Confidence 33345679999999999999999984 456999999999 88776 3489999999887543 7899999
Q ss_pred EecccccccC---------hhH-----------------HHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMGYFLLF---------ENM-----------------LNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~~~l~~---------~~~-----------------~~~~l~~~~~~LkpgG~lip 227 (409)
++++...... ... ...++..+.++|+|||+++.
T Consensus 104 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~ 162 (421)
T 2ih2_A 104 GNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF 162 (421)
T ss_dssp ECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence 9874322111 111 12567888899999998763
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-10 Score=109.40 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=76.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||||||+|.++..+++. +..+++++|+ + +++.|++ . .+++++.+|+.+ +++ . ||+|++..
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~-~-~D~v~~~~ 275 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFA-SVP-Q-GDAMILKA 275 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT-CCC-C-EEEEEEES
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCccc-CCC-C-CCEEEEec
Confidence 556789999999999999999995 4568999999 7 8887764 1 349999999987 565 3 99999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+++. ......+++.+.++|||||+++..
T Consensus 276 ~lh~~~-d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 276 VCHNWS-DEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp SGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCC-HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 543332 122348999999999999998854
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6e-10 Score=108.28 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..+..+|||||||+|.++..+++ .+..+++++|+ + +++.|++. ++++++.+|+.+ +++.+ |+|++..
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~--D~v~~~~ 267 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EVPSG--DTILMKW 267 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCCC--SEEEEES
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CCCCC--CEEEehH
Confidence 56678999999999999999998 45669999999 6 88776542 469999999987 66633 9999876
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+.+ .......+++++++.|||||+++..
T Consensus 268 vlh~~-~d~~~~~~L~~~~~~L~pgG~l~i~ 297 (364)
T 3p9c_A 268 ILHDW-SDQHCATLLKNCYDALPAHGKVVLV 297 (364)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HhccC-CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 54333 2345668899999999999998854
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-11 Score=112.93 Aligned_cols=106 Identities=18% Similarity=0.265 Sum_probs=79.4
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-CceeE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKVDI 192 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~Dv 192 (409)
.+.....++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.|++++. ..++++++++|+.+++++. ++| .
T Consensus 22 ~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~~~~f-~ 96 (245)
T 1yub_A 22 IKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNKQRY-K 96 (245)
T ss_dssp HHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCSSEE-E
T ss_pred HHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCcccCCCc-E
Confidence 333456688899999999999999999986 6999999999 9999887764 2356999999999987763 688 7
Q ss_pred EEEecccccccChhHHHHHH--------------HHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVL--------------YARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l--------------~~~~~~LkpgG~lip 227 (409)
|++++. |... ...+..++ +.+.++|+|||.+..
T Consensus 97 vv~n~P-y~~~-~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 97 IVGNIP-YHLS-TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp EEEECC-SSSC-HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred EEEeCC-cccc-HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 888763 3332 22333332 457788899887653
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.8e-10 Score=102.69 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=72.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-Cce
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKV 190 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~ 190 (409)
.|.+.....++ +|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++.. .+++++++|+.+++++. ..+
T Consensus 38 ~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 38 RIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChhhccCc
Confidence 34444456778 99999999999999999986 5899999999 99999988752 46999999999988753 268
Q ss_pred eEEEEecccccccChhHHHHHHHH
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYA 214 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~ 214 (409)
|.|++++. |.+ ..+.+..++..
T Consensus 112 ~~iv~NlP-y~i-ss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLVANLP-YHI-ATPLVTRLLKT 133 (271)
T ss_dssp EEEEEEEC-SSC-CHHHHHHHHHH
T ss_pred cEEEecCc-ccc-cHHHHHHHhcC
Confidence 99999974 433 23344444443
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-09 Score=104.55 Aligned_cols=112 Identities=16% Similarity=0.097 Sum_probs=85.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
.+.......+..+|||||||+|.++..+++ .+..+++..|..++++.|++++...+ .++|+++.+|+.+.+. ..+|
T Consensus 170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~--~~~D 246 (353)
T 4a6d_A 170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL--PEAD 246 (353)
T ss_dssp HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC---CCSEEEEESCTTTSCC--CCCS
T ss_pred HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc-cCceeeecCccccCCC--CCce
Confidence 344444556778999999999999999998 56678999998449999998876544 5789999999987544 4589
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|++..+.+... ......+++.+++.|+|||+++..
T Consensus 247 ~~~~~~vlh~~~-d~~~~~iL~~~~~al~pgg~lli~ 282 (353)
T 4a6d_A 247 LYILARVLHDWA-DGKCSHLLERIYHTCKPGGGILVI 282 (353)
T ss_dssp EEEEESSGGGSC-HHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred EEEeeeecccCC-HHHHHHHHHHHHhhCCCCCEEEEE
Confidence 999876544332 234568899999999999998753
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.8e-10 Score=102.29 Aligned_cols=82 Identities=12% Similarity=0.234 Sum_probs=67.0
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC----
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---- 186 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---- 186 (409)
+.|.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++.. .++++++++|+.+++++
T Consensus 19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 19 QKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhcc
Confidence 334444556788999999999999999999986 5999999999 99999998864 24699999999998764
Q ss_pred CCceeEEEEecc
Q 015306 187 VTKVDIIISEWM 198 (409)
Q Consensus 187 ~~~~DvVvs~~~ 198 (409)
.++|| ||+++.
T Consensus 95 ~~~~~-vv~NlP 105 (255)
T 3tqs_A 95 DKPLR-VVGNLP 105 (255)
T ss_dssp SSCEE-EEEECC
T ss_pred CCCeE-EEecCC
Confidence 25688 788763
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.9e-10 Score=111.83 Aligned_cols=115 Identities=17% Similarity=0.021 Sum_probs=86.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc--------------CCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEE
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--------------GAAHVYAVECSQ-MANMAKQIVEANGFSN-VIT 174 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~--------------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~ 174 (409)
.+.+.+.....++.+|||+|||+|.+...+++. ...+++|+|+++ +++.|+.++...++.. .+.
T Consensus 160 ~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 160 IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 344444444567789999999999999988873 235799999999 9999999999888752 578
Q ss_pred EEEcccccccCCCCceeEEEEecccccccCh--------------hHHHHHHHHHHhcccCCeEEE
Q 015306 175 VLKGKIEEIELPVTKVDIIISEWMGYFLLFE--------------NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 175 ~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~--------------~~~~~~l~~~~~~LkpgG~li 226 (409)
++++|....+.. ++||+|+++++....... .....++..+.++|||||+++
T Consensus 240 i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a 304 (445)
T 2okc_A 240 IVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA 304 (445)
T ss_dssp EEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred EeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEE
Confidence 899998876554 589999999753221110 011367888889999999876
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-10 Score=99.65 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=71.4
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---CCCceeEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~DvV 193 (409)
..+.+|.+|||||||. +++|+|+ |++.|+++... +++++++|+.++++ ++++||+|
T Consensus 8 ~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp TTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred cCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEeEE
Confidence 3467899999999996 2399999 99999987532 38999999999887 67899999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++..+.+++ ..++..+++++.++|||||+++.
T Consensus 68 ~~~~~l~~~--~~~~~~~l~~~~r~LkpgG~l~~ 99 (176)
T 2ld4_A 68 LSGLVPGST--TLHSAEILAEIARILRPGGCLFL 99 (176)
T ss_dssp EECCSTTCC--CCCCHHHHHHHHHHEEEEEEEEE
T ss_pred EECChhhhc--ccCHHHHHHHHHHHCCCCEEEEE
Confidence 996543333 14567899999999999999986
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=106.14 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||||||+|.++..+++. +..+++++|+ + +++.|++ . .+++++.+|+.+ +++ .||+|++..
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~p--~~D~v~~~~ 254 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFT-SIP--NADAVLLKY 254 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTT-CCC--CCSEEEEES
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-CCcEEEeccccC-CCC--CccEEEeeh
Confidence 456789999999999999999984 4569999999 8 9887765 1 239999999976 555 399999976
Q ss_pred ccccccChhHHHHHHHHHHhcccC---CeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVD---DGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~Lkp---gG~lip~ 228 (409)
+.+++. ......+++.+.++||| ||+++..
T Consensus 255 ~lh~~~-d~~~~~~l~~~~~~L~p~~~gG~l~i~ 287 (352)
T 1fp2_A 255 ILHNWT-DKDCLRILKKCKEAVTNDGKRGKVTII 287 (352)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred hhccCC-HHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 544332 12334899999999999 9998754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-09 Score=111.43 Aligned_cols=118 Identities=16% Similarity=0.147 Sum_probs=90.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcC-------------------------------------------
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG------------------------------------------- 144 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g------------------------------------------- 144 (409)
+.+..++.......++..|||++||+|.+++.++..+
T Consensus 176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~ 255 (703)
T 3v97_A 176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY 255 (703)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence 3556666666666788899999999999999988742
Q ss_pred CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCceeEEEEeccccc--ccChhHHHHHHHHHHhcc
Q 015306 145 AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYF--LLFENMLNTVLYARDKWL 219 (409)
Q Consensus 145 ~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~DvVvs~~~~~~--l~~~~~~~~~l~~~~~~L 219 (409)
..+|+|+|+++ +++.|++++..+|+.+.+++.++|+.++..+ .++||+|+++++ |. +.....+..+...+.+.|
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPP-YG~Rlg~~~~l~~ly~~l~~~l 334 (703)
T 3v97_A 256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPP-YGERLDSEPALIALHSLLGRIM 334 (703)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCC-CCC---CCHHHHHHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCC-ccccccchhHHHHHHHHHHHHH
Confidence 14799999999 9999999999999998899999999988544 238999999974 33 222345556665555444
Q ss_pred ---cCCeEEE
Q 015306 220 ---VDDGIVL 226 (409)
Q Consensus 220 ---kpgG~li 226 (409)
.|||.+.
T Consensus 335 k~~~~g~~~~ 344 (703)
T 3v97_A 335 KNQFGGWNLS 344 (703)
T ss_dssp HHHCTTCEEE
T ss_pred HhhCCCCeEE
Confidence 4788754
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-09 Score=100.89 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=70.2
Q ss_pred ccCCCCCCEEEEEcCCC------ChHHHHHHH-cC-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEE-EEcccccccCCC
Q 015306 117 NKFLFKDKVVLDVGAGT------GILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITV-LKGKIEEIELPV 187 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~------G~l~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~-~~~d~~~~~~~~ 187 (409)
.....++.+|||||||+ |. ..+++ .+ ..+|+|+|+++. + .++++ +++|+.+++++
T Consensus 58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------------v-~~v~~~i~gD~~~~~~~- 121 (290)
T 2xyq_A 58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------------V-SDADSTLIGDCATVHTA- 121 (290)
T ss_dssp CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------------B-CSSSEEEESCGGGCCCS-
T ss_pred hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------------C-CCCEEEEECccccCCcc-
Confidence 34567889999999954 66 33444 55 469999999984 1 24788 99999988765
Q ss_pred CceeEEEEeccccc--------ccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 TKVDIIISEWMGYF--------LLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~--------l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++||+|++++.... .........+++.+.++|||||.++.
T Consensus 122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~ 169 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV 169 (290)
T ss_dssp SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 78999999753221 11123456889999999999999985
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-08 Score=89.61 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC--CCcEEEEEcccccc---------------
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--SNVITVLKGKIEEI--------------- 183 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~~--------------- 183 (409)
+.++|||+|| |..++.+|+....+|++||.++ .++.|++++..+|+ .++|+++.+|+.+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 5679999998 4788888885357999999999 99999999999998 78999999996542
Q ss_pred c--------C-CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 184 E--------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 184 ~--------~-~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+ . ..++||+|+.+.- .. ...+..+.++|+|||+++...
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~-------k~-~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR-------FR-VGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS-------SH-HHHHHHHHHHCSSCEEEEETT
T ss_pred HHHhhhhhccccCCCCCEEEEeCC-------Cc-hhHHHHHHHhcCCCeEEEEeC
Confidence 1 1 1368999997641 11 244444558999999998654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.9e-10 Score=101.75 Aligned_cols=79 Identities=27% Similarity=0.145 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-H-------HHHHHHHHHHcCCCCcEEEEEccccccc--CCC--
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-M-------ANMAKQIVEANGFSNVITVLKGKIEEIE--LPV-- 187 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~-------~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~-- 187 (409)
..++.+|||+|||+|.+++.+++.|. +|+++|+++ + ++.|++++..+++.++++++++|+.++. +++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~ 159 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQ 159 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccC
Confidence 45678999999999999999999865 899999998 4 3456666666666667999999998852 333
Q ss_pred CceeEEEEeccc
Q 015306 188 TKVDIIISEWMG 199 (409)
Q Consensus 188 ~~~DvVvs~~~~ 199 (409)
++||+|+++++.
T Consensus 160 ~~fD~V~~dP~~ 171 (258)
T 2r6z_A 160 GKPDIVYLDPMY 171 (258)
T ss_dssp CCCSEEEECCCC
T ss_pred CCccEEEECCCC
Confidence 689999998753
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.8e-09 Score=104.18 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=65.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--CCCCcEEEEEcccccc-cC-CCCceeEEEEe
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--GFSNVITVLKGKIEEI-EL-PVTKVDIIISE 196 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--~~~~~i~~~~~d~~~~-~~-~~~~~DvVvs~ 196 (409)
+|.+|||+|||+|..++.+++.+. +|++||+|+ +++.|++++..+ ++ ++++++++|+.+. .. +.++||+|+++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 589999999999999999998854 999999999 999999999988 88 6799999999885 21 23589999998
Q ss_pred cc
Q 015306 197 WM 198 (409)
Q Consensus 197 ~~ 198 (409)
+.
T Consensus 171 PP 172 (410)
T 3ll7_A 171 PA 172 (410)
T ss_dssp CE
T ss_pred CC
Confidence 74
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.4e-09 Score=99.86 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=66.0
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CC---CCcee
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP---VTKVD 191 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~---~~~~D 191 (409)
...++.+|||+|||+|..+..+++. +..+|+|+|.|+ +++.|++++..++ ++++++++|+.+++ +. ..+||
T Consensus 23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~D 100 (301)
T 1m6y_A 23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKVD 100 (301)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCCC
Confidence 4568899999999999999999996 356999999999 9999999998877 57999999998875 22 15899
Q ss_pred EEEEec
Q 015306 192 IIISEW 197 (409)
Q Consensus 192 vVvs~~ 197 (409)
.|++++
T Consensus 101 ~Vl~D~ 106 (301)
T 1m6y_A 101 GILMDL 106 (301)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 999875
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5.1e-09 Score=101.42 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=74.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||||||+|.++..+++. +..+++++|++.+++.|++ . .+++++.+|+.+ +++ +||+|++..+.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~~--~~D~v~~~~vl 261 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------N-ENLNFVGGDMFK-SIP--SADAVLLKWVL 261 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------C-SSEEEEECCTTT-CCC--CCSEEEEESCG
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------C-CCcEEEeCccCC-CCC--CceEEEEcccc
Confidence 46689999999999999999985 4568999999338776654 2 249999999987 555 49999997654
Q ss_pred ccccChhHHHHHHHHHHhcccC---CeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDKWLVD---DGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lkp---gG~lip~ 228 (409)
+.+. ......+++.+.+.|+| ||+++..
T Consensus 262 h~~~-d~~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 262 HDWN-DEQSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp GGSC-HHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred cCCC-HHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 4332 22344899999999999 9988753
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.6e-09 Score=96.48 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=63.7
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCC---EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA---HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~---~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
.|.......++.+|||||||+|.++..+++.+.. +|+|+|+++ +++.++++. .++++++++|+.++++++-
T Consensus 33 ~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~~~ 107 (279)
T 3uzu_A 33 AIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFGSI 107 (279)
T ss_dssp HHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGGGG
T ss_pred HHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChhHh
Confidence 3444445678899999999999999999997542 299999999 999999883 2569999999999876521
Q ss_pred ------ceeEEEEecc
Q 015306 189 ------KVDIIISEWM 198 (409)
Q Consensus 189 ------~~DvVvs~~~ 198 (409)
..+.||+++.
T Consensus 108 ~~~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 108 ARPGDEPSLRIIGNLP 123 (279)
T ss_dssp SCSSSSCCEEEEEECC
T ss_pred cccccCCceEEEEccC
Confidence 3457888863
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.3e-09 Score=95.51 Aligned_cols=84 Identities=19% Similarity=0.262 Sum_probs=66.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
+.+.|.+.....++.+|||||||+|.++..+++.|+.+|+|+|+++ +++.++++ + ..+++++++|+.++++++.
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~~~~ 93 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPFCSL 93 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCGGGS
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCChhHc
Confidence 3344444455678899999999999999999998777999999999 99999876 1 2469999999999876521
Q ss_pred -ceeEEEEecc
Q 015306 189 -KVDIIISEWM 198 (409)
Q Consensus 189 -~~DvVvs~~~ 198 (409)
....|++++.
T Consensus 94 ~~~~~vv~NlP 104 (249)
T 3ftd_A 94 GKELKVVGNLP 104 (249)
T ss_dssp CSSEEEEEECC
T ss_pred cCCcEEEEECc
Confidence 1237777763
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.78 E-value=7.4e-09 Score=95.29 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=64.1
Q ss_pred cCCCCC--CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-CCCcEEEEEccccccc--
Q 015306 118 KFLFKD--KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FSNVITVLKGKIEEIE-- 184 (409)
Q Consensus 118 ~~~~~~--~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~~~~i~~~~~d~~~~~-- 184 (409)
....++ .+|||+|||+|..++.+++.|+ +|++||.++ ++..+++++... + +.++++++++|+.++.
T Consensus 82 l~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~ 160 (258)
T 2oyr_A 82 VGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (258)
T ss_dssp TTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred hcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh
Confidence 444566 8999999999999999999877 799999999 988887776432 2 3356999999998853
Q ss_pred CCCCceeEEEEeccc
Q 015306 185 LPVTKVDIIISEWMG 199 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~ 199 (409)
++ ++||+|+++++.
T Consensus 161 ~~-~~fDvV~lDP~y 174 (258)
T 2oyr_A 161 IT-PRPQVVYLDPMF 174 (258)
T ss_dssp CS-SCCSEEEECCCC
T ss_pred Cc-ccCCEEEEcCCC
Confidence 33 479999999863
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-08 Score=102.86 Aligned_cols=113 Identities=13% Similarity=-0.065 Sum_probs=82.7
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHc----C---------------CCEEEEEecHH-HHHHHHHHHHHcCCCC--
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G---------------AAHVYAVECSQ-MANMAKQIVEANGFSN-- 171 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~----g---------------~~~V~~vD~s~-~~~~a~~~~~~~~~~~-- 171 (409)
+.+.....++.+|||.|||+|.+...+++. + ..+++|+|+++ +++.|+.++...++.+
T Consensus 161 mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~ 240 (541)
T 2ar0_A 161 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 240 (541)
T ss_dssp HHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBG
T ss_pred HHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccc
Confidence 333344567789999999999998888763 1 13799999999 9999999998888754
Q ss_pred --cEEEEEccccccc-CCCCceeEEEEecccccccC-----------hhHHHHHHHHHHhcccCCeEEE
Q 015306 172 --VITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLF-----------ENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 172 --~i~~~~~d~~~~~-~~~~~~DvVvs~~~~~~l~~-----------~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+.++++|....+ .+.++||+|+++++...... ...-..++..+.++|||||++.
T Consensus 241 ~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 309 (541)
T 2ar0_A 241 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 309 (541)
T ss_dssp GGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred cccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEE
Confidence 2678899986543 23478999999975322111 0112367888889999999865
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.73 E-value=7.6e-09 Score=95.10 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=61.7
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCE--EEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC--
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAH--VYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-- 187 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~--V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-- 187 (409)
.|.+.....++.+|||||||+|.++. +++ + .+ |+|+|+++ +++.+++++... ++++++++|+.+++++.
T Consensus 12 ~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 12 SIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHH
T ss_pred HHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhh
Confidence 33333456788899999999999999 765 3 46 99999999 999999876432 46999999999977541
Q ss_pred ---CceeEEEEecc
Q 015306 188 ---TKVDIIISEWM 198 (409)
Q Consensus 188 ---~~~DvVvs~~~ 198 (409)
+..|+|++++.
T Consensus 86 ~~~~~~~~vvsNlP 99 (252)
T 1qyr_A 86 EKMGQPLRVFGNLP 99 (252)
T ss_dssp HHHTSCEEEEEECC
T ss_pred cccCCceEEEECCC
Confidence 23578998864
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-08 Score=92.73 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc--C-C-CCcEEEEEccccccc-CCCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--G-F-SNVITVLKGKIEEIE-LPVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~--~-~-~~~i~~~~~d~~~~~-~~~~~~DvV 193 (409)
...++||-||.|.|..+..+++. +..+|+.||+++ +++.+++.+... + + +.+++++.+|...+- ...++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 45689999999999999999995 578999999999 999999987531 1 1 368999999998864 235789999
Q ss_pred EEecccccccChh-HHHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+.......... .-..+++.+++.|+|||+++.+
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 9975432211111 1247788999999999999854
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-07 Score=93.25 Aligned_cols=106 Identities=14% Similarity=0.065 Sum_probs=81.9
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc----CCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcccccc--c-CCCCce
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA----GAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEI--E-LPVTKV 190 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~----g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~--~-~~~~~~ 190 (409)
..++.+|||.+||+|.+.+.+++. +...++|+|+++ ++..|+.++..+|+. +++.+.++|.... + ....+|
T Consensus 219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~f 298 (542)
T 3lkd_A 219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNF 298 (542)
T ss_dssp TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccc
Confidence 346789999999999998888875 356899999999 999999999988885 4689999998765 2 335789
Q ss_pred eEEEEecccccccC--h------------h------H-HHHHHHHHHhccc-CCeEEE
Q 015306 191 DIIISEWMGYFLLF--E------------N------M-LNTVLYARDKWLV-DDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~--~------------~------~-~~~~l~~~~~~Lk-pgG~li 226 (409)
|+|+++|+.. ... . + . --.++..+.+.|+ |||++.
T Consensus 299 D~IvaNPPf~-~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a 355 (542)
T 3lkd_A 299 DGVLMNPPYS-AKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA 355 (542)
T ss_dssp SEEEECCCTT-CCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred cEEEecCCcC-CccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence 9999997432 111 0 0 0 0147788889999 999864
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.6e-08 Score=98.92 Aligned_cols=102 Identities=14% Similarity=0.016 Sum_probs=75.8
Q ss_pred EEEEEcCCCChHHHHHHHc-----C-----------CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CC
Q 015306 125 VVLDVGAGTGILSLFCAKA-----G-----------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LP 186 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~-----g-----------~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~ 186 (409)
+|||.+||+|.+.+.+++. + ...++|+|+++ ++..|+.++..+++...+.+.++|....+ .+
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~ 326 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHP 326 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCT
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccc
Confidence 9999999999988877542 0 34899999999 99999999999998765555788876544 34
Q ss_pred CCceeEEEEeccccccc-------------------------Chh-HHHHHHHHHHhcccCCeEEE
Q 015306 187 VTKVDIIISEWMGYFLL-------------------------FEN-MLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~-------------------------~~~-~~~~~l~~~~~~LkpgG~li 226 (409)
..+||+|+++|+...-. ... .--.++..+.+.|+|||++.
T Consensus 327 ~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 392 (544)
T 3khk_A 327 DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMA 392 (544)
T ss_dssp TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEE
T ss_pred cccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEE
Confidence 57899999997432110 000 01157888889999999854
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=9.5e-08 Score=87.33 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=72.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
+.+...+ ..+.++.+|||||||+|.++..+++ .++..|+|+|+.. +....... ...++ + +..+..++....++.
T Consensus 63 L~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~-ii~~~~~~dv~~l~~ 138 (277)
T 3evf_A 63 LRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-N-IITFKDKTDIHRLEP 138 (277)
T ss_dssp HHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-G-GEEEECSCCTTTSCC
T ss_pred HHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-C-eEEEeccceehhcCC
Confidence 3343444 5567888999999999999999887 4777899999874 31000000 00011 2 444566665555666
Q ss_pred CceeEEEEecccccccChhH---HHHHHHHHHhcccCC-eEEEc
Q 015306 188 TKVDIIISEWMGYFLLFENM---LNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~---~~~~l~~~~~~Lkpg-G~lip 227 (409)
++||+|+|+...+...+.-+ ...+++.+.++|+|| |.++.
T Consensus 139 ~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 139 VKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 89999999875441111111 113467778999999 99884
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-07 Score=89.26 Aligned_cols=115 Identities=20% Similarity=0.075 Sum_probs=88.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCC-----CcEEEEEccccccc-CCCCc
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFS-----NVITVLKGKIEEIE-LPVTK 189 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~-~~~~~ 189 (409)
+...+|.+|||+++|.|.=+..+++.+ ...|+|+|+++ -+..+++++...+.. +++.+...|...+. ...+.
T Consensus 144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~ 223 (359)
T 4fzv_A 144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT 223 (359)
T ss_dssp HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence 456889999999999999999999864 34799999999 999999999887653 46899999988764 33478
Q ss_pred eeEEEEeccccc----ccC-h---------h-------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 190 VDIIISEWMGYF----LLF-E---------N-------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 190 ~DvVvs~~~~~~----l~~-~---------~-------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
||.|+.+...+. ... . . ....++....++|||||+++-+++++
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 999999864332 110 0 0 12467788889999999999777664
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-06 Score=81.50 Aligned_cols=119 Identities=9% Similarity=0.075 Sum_probs=86.7
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc------CCCEEEEEecH--------------------------
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECS-------------------------- 154 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~------g~~~V~~vD~s-------------------------- 154 (409)
...+...+...........|||+|+..|..++.+++. ...+|+++|..
T Consensus 91 ~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~ 170 (282)
T 2wk1_A 91 LENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVL 170 (282)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccc
Confidence 3334444433333345679999999999998888763 25689999953
Q ss_pred H-HHHHHHHHHHHcCCC-CcEEEEEccccccc--CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 155 Q-MANMAKQIVEANGFS-NVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 155 ~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+ .++.+++++...|+. ++|+++.+++.+.- ++.++||+|+.+. . .+ ......++.+...|+|||+++...+
T Consensus 171 ~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa-D---~y-~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 171 AVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG-D---LY-ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC-C---SH-HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred hhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC-C---cc-ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 2 367789999999984 88999999997743 3347899999764 1 12 2234678889999999999998765
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=7e-07 Score=85.36 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
+.+|.+||||||++|.++..+++.|. +|+|||..+|...+. .. .+|+++++|...+..+..++|+|+|++.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~----~~---~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLM----DT---GQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHH----TT---TCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhc----cC---CCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 57899999999999999999999976 999999877333222 11 4599999999998877678999999874
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.9e-07 Score=88.41 Aligned_cols=120 Identities=20% Similarity=0.181 Sum_probs=85.9
Q ss_pred HHHHHHHhcc-CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc---CC----CCcEEEEEcc
Q 015306 109 SYQNVIYQNK-FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---GF----SNVITVLKGK 179 (409)
Q Consensus 109 ~~~~~l~~~~-~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~---~~----~~~i~~~~~d 179 (409)
.|.+.+.... ...++++||-||.|.|..+..+.+.+..+|+.||+++ +++.+++.+... .+ .++++++.+|
T Consensus 191 ~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~D 270 (381)
T 3c6k_A 191 AYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIED 270 (381)
T ss_dssp HHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESC
T ss_pred HHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHH
Confidence 4555554322 1235689999999999999999997778999999999 999999975321 11 2468999999
Q ss_pred ccccc----CCCCceeEEEEeccccccc------Ch-hHHHHHHHHHHhcccCCeEEEcc
Q 015306 180 IEEIE----LPVTKVDIIISEWMGYFLL------FE-NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 180 ~~~~~----~~~~~~DvVvs~~~~~~l~------~~-~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
...+- -..++||+|+.+....... .. --...+++.+++.|+|||+++.+
T Consensus 271 a~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 271 CIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 97653 1246899999975321111 11 11257788899999999998843
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.43 E-value=7.3e-08 Score=88.21 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=70.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
+.+...+. .+.++.+|||||||+|.++..+++ .|+..|+|+|+.. +...+... ...+. +.+ .+..++....++.
T Consensus 79 L~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~-~ii-~~~~~~dv~~l~~ 154 (282)
T 3gcz_A 79 LRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGW-NLI-RFKDKTDVFNMEV 154 (282)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTG-GGE-EEECSCCGGGSCC
T ss_pred HHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCC-ceE-EeeCCcchhhcCC
Confidence 33334443 567888999999999999999986 6788999999975 32211100 00111 223 3343333334556
Q ss_pred CceeEEEEecccccccChhH---HHHHHHHHHhcccCC--eEEEc
Q 015306 188 TKVDIIISEWMGYFLLFENM---LNTVLYARDKWLVDD--GIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~---~~~~l~~~~~~Lkpg--G~lip 227 (409)
.++|+|+|++........-+ ...+++-+.++|+|| |.|+.
T Consensus 155 ~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 155 IPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 89999999875541111111 123466678999999 99873
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-06 Score=90.85 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcC----CCEEEEEecHH-HHHHH--HHHHHHcCCC---CcEEEEEccccccc-CCCCc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAG----AAHVYAVECSQ-MANMA--KQIVEANGFS---NVITVLKGKIEEIE-LPVTK 189 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g----~~~V~~vD~s~-~~~~a--~~~~~~~~~~---~~i~~~~~d~~~~~-~~~~~ 189 (409)
.++.+|||.|||+|.+.+.+++.. ..+++|+|+++ +++.| +.++..+.+. +...+...|+.... ...++
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 467899999999999999999842 24799999999 99999 5554442221 11355666666532 23478
Q ss_pred eeEEEEeccccccc-C-hh-------------------------HHHHHHHHHHhcccCCeEEE
Q 015306 190 VDIIISEWMGYFLL-F-EN-------------------------MLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~-~-~~-------------------------~~~~~l~~~~~~LkpgG~li 226 (409)
||+||++|+ |... . .. ....++..+.++|+|||++.
T Consensus 400 FDVVIgNPP-Yg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLA 462 (878)
T 3s1s_A 400 VSVVVMNPP-YVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVIS 462 (878)
T ss_dssp EEEEEECCB-CCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEE
T ss_pred CCEEEECCC-ccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEE
Confidence 999999984 3221 1 00 12346777889999999875
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.34 E-value=9.2e-07 Score=81.27 Aligned_cols=107 Identities=21% Similarity=0.135 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-------CC------CEEEEEecHH---------------HHHHHHHHHHHc-----
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-------GA------AHVYAVECSQ---------------MANMAKQIVEAN----- 167 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-------g~------~~V~~vD~s~---------------~~~~a~~~~~~~----- 167 (409)
.++.+|||||+|+|..++.+++. +. .+|+++|..+ +.+.|++.+...
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35679999999999888776552 22 4899999753 233556655431
Q ss_pred -----CCC---CcEEEEEcccccc-c-CCC---CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 168 -----GFS---NVITVLKGKIEEI-E-LPV---TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 168 -----~~~---~~i~~~~~d~~~~-~-~~~---~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+. .+++++.+|+.+. + .+. ..||+|+.+.+...-..+-.-+.++..+.++|+|||+++.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 011 3588999999884 3 221 2799999875321111111236789999999999999984
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.2e-07 Score=73.85 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=52.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCC-hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G-~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
.+.+.|.+. ..++.+|||||||+| ..+..|++ .|. .|+++|+++ .++ +++.|+.+..+
T Consensus 24 ~LaeYI~~~--~~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~dDiF~P~~ 84 (153)
T 2k4m_A 24 DLAVYIIRC--SGPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVRDDITSPRM 84 (153)
T ss_dssp HHHHHHHHH--SCSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EECCCSSSCCH
T ss_pred HHHHHHHhc--CCCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEEccCCCCcc
Confidence 455555533 345679999999999 59999998 776 899999998 544 88889887543
Q ss_pred CC-CceeEEEE
Q 015306 186 PV-TKVDIIIS 195 (409)
Q Consensus 186 ~~-~~~DvVvs 195 (409)
.. +.||+|.+
T Consensus 85 ~~Y~~~DLIYs 95 (153)
T 2k4m_A 85 EIYRGAALIYS 95 (153)
T ss_dssp HHHTTEEEEEE
T ss_pred cccCCcCEEEE
Confidence 21 48999977
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.3e-06 Score=74.09 Aligned_cols=111 Identities=18% Similarity=0.247 Sum_probs=72.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ccccccCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELP 186 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~ 186 (409)
+.+...+. .+.++.+||||||++|.++..++. .|+.+|+|+|+-. -.+ --...+..|| +.|+|+.+ |+..++.
T Consensus 67 L~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe-~P~~~~s~gw-n~v~fk~gvDv~~~~~- 142 (267)
T 3p8z_A 67 LQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE-EPVPMSTYGW-NIVKLMSGKDVFYLPP- 142 (267)
T ss_dssp HHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCCTTT-TSEEEECSCCGGGCCC-
T ss_pred HHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCcc-CcchhhhcCc-CceEEEeccceeecCC-
Confidence 33444443 567888999999999999998887 6888999999976 110 0001122355 45999999 9866543
Q ss_pred CCceeEEEEecccccccChhHH---HHHHHHHHhcccCCeEEE
Q 015306 187 VTKVDIIISEWMGYFLLFENML---NTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~---~~~l~~~~~~LkpgG~li 226 (409)
.++|+|+|++-......+-+- -.+++-+.++|++ |.++
T Consensus 143 -~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc 183 (267)
T 3p8z_A 143 -EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFC 183 (267)
T ss_dssp -CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEE
T ss_pred -ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEE
Confidence 779999998633221111111 2356667899998 5443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=5.6e-07 Score=82.88 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=70.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
+.++..+ ..+.++.+||||||++|.++..+++ .|+..|+|+|+.. +...... ....++ +.+.+ ..++....+..
T Consensus 70 L~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~-~~~~di~~l~~ 145 (300)
T 3eld_A 70 IRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKF-KDKSNVFTMPT 145 (300)
T ss_dssp HHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEE-ECSCCTTTSCC
T ss_pred HHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEe-ecCceeeecCC
Confidence 3444444 4567889999999999999999998 5777899999974 3110000 000011 22333 33333233455
Q ss_pred CceeEEEEecccccccChh---HHHHHHHHHHhcccCC-eEEEc
Q 015306 188 TKVDIIISEWMGYFLLFEN---MLNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~---~~~~~l~~~~~~Lkpg-G~lip 227 (409)
+++|+|+|+...+.....- ....++.-+.++|+|| |.|+.
T Consensus 146 ~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~ 189 (300)
T 3eld_A 146 EPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCV 189 (300)
T ss_dssp CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEE
T ss_pred CCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 7899999986554111111 1124467778999999 99883
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.18 E-value=7.2e-06 Score=75.12 Aligned_cols=112 Identities=19% Similarity=0.190 Sum_probs=71.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ccccccCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELP 186 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~ 186 (409)
+.+.+.+ ..+.++.+||||||++|.++..++. .|+.+|+|+|+-. -.+. -..++..++ +.|+++.+ |+..++.
T Consensus 83 L~ei~~~-~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w-~lV~~~~~~Dv~~l~~- 158 (321)
T 3lkz_A 83 LRWLVER-RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGW-NIVTMKSGVDVFYRPS- 158 (321)
T ss_dssp HHHHHHT-TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTG-GGEEEECSCCTTSSCC-
T ss_pred HHHHHHh-cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCC-cceEEEeccCHhhCCC-
Confidence 3333333 5567888999999999999998877 6888999999865 1100 000011233 34888888 8877654
Q ss_pred CCceeEEEEecccccccChhHH---HHHHHHHHhcccCC-eEEE
Q 015306 187 VTKVDIIISEWMGYFLLFENML---NTVLYARDKWLVDD-GIVL 226 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~---~~~l~~~~~~Lkpg-G~li 226 (409)
.++|+|+|+.--.....+-+- -.+|+-+.++|++| |-++
T Consensus 159 -~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~ 201 (321)
T 3lkz_A 159 -ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFC 201 (321)
T ss_dssp -CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred -CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEE
Confidence 679999998521111111111 23566668999988 6554
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-06 Score=76.31 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=63.6
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-CC----CEEEEEe--cHHHHHHHHHHHHHcCCCCcEEEEEc-ccccccCCCCc
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GA----AHVYAVE--CSQMANMAKQIVEANGFSNVITVLKG-KIEEIELPVTK 189 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g~----~~V~~vD--~s~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~ 189 (409)
.-+.++.+||||||+.|.++..+++. +. ..|+|+| +.++.. ...|+ +-++++++ |+.++. ..+
T Consensus 69 ~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~------~~~Gv-~~i~~~~G~Df~~~~--~~~ 139 (269)
T 2px2_A 69 RFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM------QSYGW-NIVTMKSGVDVFYKP--SEI 139 (269)
T ss_dssp TSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC------CSTTG-GGEEEECSCCGGGSC--CCC
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc------cCCCc-eEEEeeccCCccCCC--CCC
Confidence 35788999999999999999999985 33 2455555 222000 00121 33577767 998753 368
Q ss_pred eeEEEEecccccccChhHHH---HHHHHHHhcccCCe-EEE
Q 015306 190 VDIIISEWMGYFLLFENMLN---TVLYARDKWLVDDG-IVL 226 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~---~~l~~~~~~LkpgG-~li 226 (409)
+|+|+|++........-+.. .+++-+.++|+||| .|+
T Consensus 140 ~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fv 180 (269)
T 2px2_A 140 SDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFC 180 (269)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred CCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 99999987544211111111 24555678999999 776
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.8e-06 Score=76.56 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=62.3
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D 191 (409)
....++..+||.+||.|..+..+++. ..+|+|+|.++ +++.|++ +.. ++++++++++.++. ...+++|
T Consensus 18 L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~~~vD 91 (285)
T 1wg8_A 18 LAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALGVERVD 91 (285)
T ss_dssp HTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred hCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcCCCCcC
Confidence 34568899999999999999999998 45999999999 9999988 533 47999999999875 1235799
Q ss_pred EEEEec
Q 015306 192 IIISEW 197 (409)
Q Consensus 192 vVvs~~ 197 (409)
.|++++
T Consensus 92 gIL~DL 97 (285)
T 1wg8_A 92 GILADL 97 (285)
T ss_dssp EEEEEC
T ss_pred EEEeCC
Confidence 999874
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.3e-05 Score=74.52 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCChHHHHHHHc----------------CCCEEEEEecHH-HHHHHHHHHHHcC-----------C--C-C
Q 015306 123 DKVVLDVGAGTGILSLFCAKA----------------GAAHVYAVECSQ-MANMAKQIVEANG-----------F--S-N 171 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~----------------g~~~V~~vD~s~-~~~~a~~~~~~~~-----------~--~-~ 171 (409)
+.+|+|+|||+|..++.+... +.-+|+.-|+.. .....-+.+.... . . -
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 579999999999988877321 233778888766 4333222222110 0 0 1
Q ss_pred cEEEEEcccccccCCCCceeEEEEecccccccCh-----------------------------------hHHHHHHHHHH
Q 015306 172 VITVLKGKIEEIELPVTKVDIIISEWMGYFLLFE-----------------------------------NMLNTVLYARD 216 (409)
Q Consensus 172 ~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~-----------------------------------~~~~~~l~~~~ 216 (409)
-+..+-+....-.+|.+++|+|+|+...+.+... .++..+++.++
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333343345778999999998665554321 15567889999
Q ss_pred hcccCCeEEEcc
Q 015306 217 KWLVDDGIVLPD 228 (409)
Q Consensus 217 ~~LkpgG~lip~ 228 (409)
+.|+|||+++..
T Consensus 213 ~eL~pGG~mvl~ 224 (374)
T 3b5i_A 213 AEVKRGGAMFLV 224 (374)
T ss_dssp HHEEEEEEEEEE
T ss_pred HHhCCCCEEEEE
Confidence 999999999853
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=4.1e-05 Score=74.04 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCChHHHHHHHc------------------CCCEEEEEecH-----------H-HHHHHHHHHHHcCCCCc
Q 015306 123 DKVVLDVGAGTGILSLFCAKA------------------GAAHVYAVECS-----------Q-MANMAKQIVEANGFSNV 172 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~------------------g~~~V~~vD~s-----------~-~~~~a~~~~~~~~~~~~ 172 (409)
..+|+|+||++|..++.+... +.-+|+..|+. + +.+.++ ...|-...
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence 578999999999888877654 12367888876 2 222211 12221111
Q ss_pred EEEEEcccc---cccCCCCceeEEEEecccccccChh------------------------------------HHHHHHH
Q 015306 173 ITVLKGKIE---EIELPVTKVDIIISEWMGYFLLFEN------------------------------------MLNTVLY 213 (409)
Q Consensus 173 i~~~~~d~~---~~~~~~~~~DvVvs~~~~~~l~~~~------------------------------------~~~~~l~ 213 (409)
-.|+.+... .-.+|.+++|+|+|+...+.+...+ ++..+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 244444433 3457889999999986555443211 2234588
Q ss_pred HHHhcccCCeEEEc
Q 015306 214 ARDKWLVDDGIVLP 227 (409)
Q Consensus 214 ~~~~~LkpgG~lip 227 (409)
.+.+.|+|||+++.
T Consensus 210 ~Ra~eL~pGG~mvl 223 (384)
T 2efj_A 210 IHSEELISRGRMLL 223 (384)
T ss_dssp HHHHHEEEEEEEEE
T ss_pred HHHHHhccCCeEEE
Confidence 88999999999984
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.84 E-value=5.9e-05 Score=76.47 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=63.7
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHc----C----------CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEE
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G----------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVL 176 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~----g----------~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~ 176 (409)
+.+.+.....++.+|+|.+||+|.+...+.++ + ...++|+|+++ +...|+-++--.|... ..+.
T Consensus 207 ~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~-~~I~ 285 (530)
T 3ufb_A 207 RFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-PRID 285 (530)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC-CEEE
T ss_pred HHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc-cccc
Confidence 33333344567789999999999998877652 1 23699999999 9999999888888753 4667
Q ss_pred EcccccccC----CCCceeEEEEecc
Q 015306 177 KGKIEEIEL----PVTKVDIIISEWM 198 (409)
Q Consensus 177 ~~d~~~~~~----~~~~~DvVvs~~~ 198 (409)
.+|....+. +..+||+|+++|+
T Consensus 286 ~~dtL~~~~~~~~~~~~fD~Il~NPP 311 (530)
T 3ufb_A 286 PENSLRFPLREMGDKDRVDVILTNPP 311 (530)
T ss_dssp CSCTTCSCGGGCCGGGCBSEEEECCC
T ss_pred ccccccCchhhhcccccceEEEecCC
Confidence 777765432 2357999999985
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.80 E-value=4.9e-05 Score=71.28 Aligned_cols=46 Identities=35% Similarity=0.389 Sum_probs=42.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (409)
.++.+|||++||+|.+++.+++.|. +++|+|+++ +++.|++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 6889999999999999999999876 999999999 999999998764
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00036 Score=63.91 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=67.5
Q ss_pred HHHHHHHh-ccCCCCCCEEEEEcC------CCChHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc
Q 015306 109 SYQNVIYQ-NKFLFKDKVVLDVGA------GTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178 (409)
Q Consensus 109 ~~~~~l~~-~~~~~~~~~VLDlGc------G~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~ 178 (409)
.+-+.|.. ......+.+|||+|+ -.|. ..+.+.+. ..|+++|+.+ .. ..+ .++++
T Consensus 95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s-----------da~--~~IqG 159 (344)
T 3r24_A 95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS-----------DAD--STLIG 159 (344)
T ss_dssp HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC-----------SSS--EEEES
T ss_pred HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc-----------CCC--eEEEc
Confidence 34444533 345677899999997 4455 33444433 3999999988 31 112 45999
Q ss_pred ccccccCCCCceeEEEEeccccccc--------ChhHHHHHHHHHHhcccCCeEEE
Q 015306 179 KIEEIELPVTKVDIIISEWMGYFLL--------FENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 179 d~~~~~~~~~~~DvVvs~~~~~~l~--------~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|...+... ++||+|+|++....-. .....+.+++-+.+.|+|||.|+
T Consensus 160 D~~~~~~~-~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFv 214 (344)
T 3r24_A 160 DCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIA 214 (344)
T ss_dssp CGGGEEES-SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccC-CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEE
Confidence 98776554 8899999985432211 12245667777889999999987
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.53 E-value=5.7e-05 Score=72.41 Aligned_cols=106 Identities=15% Similarity=0.193 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHc------------C-----CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE---ccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA------------G-----AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK---GKI 180 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~------------g-----~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~---~d~ 180 (409)
...+|+|+||++|..++.+... + .-+|+..|... ....+-+.+....-..+-.|+. +.+
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3468999999999776644332 2 23789999888 6666655543211000123444 444
Q ss_pred ccccCCCCceeEEEEecccccccC------------------------------hhHHHHHHHHHHhcccCCeEEEc
Q 015306 181 EEIELPVTKVDIIISEWMGYFLLF------------------------------ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 181 ~~~~~~~~~~DvVvs~~~~~~l~~------------------------------~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..-.+|.+++|+|+|+...+.+.. ..++..+|+.+.+.|+|||+++.
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl 207 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 445578899999999855444322 12456779999999999999984
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.48 E-value=5.6e-05 Score=69.54 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=80.4
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-c
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~ 184 (409)
...|.+.|.. ..+..+||+-+|||.+++.+.+. ..+++.+|.++ .++..++++.. .+++++++.|.... .
T Consensus 80 l~~yf~~l~~----~n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~ 151 (283)
T 2oo3_A 80 FLEYISVIKQ----INLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLN 151 (283)
T ss_dssp GHHHHHHHHH----HSSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHH
T ss_pred HHHHHHHHHH----hcCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHH
Confidence 3467777664 24556899999999999999994 57999999999 99999888864 36799999997553 2
Q ss_pred ---CCCCceeEEEEecccccccChhHHHHHHHHHHh--cccCCeEEE
Q 015306 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDK--WLVDDGIVL 226 (409)
Q Consensus 185 ---~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~--~LkpgG~li 226 (409)
.+..+||+|+.++. |.. ......++..+.+ .+.|+|+++
T Consensus 152 ~l~~~~~~fdLVfiDPP-Ye~--k~~~~~vl~~L~~~~~r~~~Gi~v 195 (283)
T 2oo3_A 152 ALLPPPEKRGLIFIDPS-YER--KEEYKEIPYAIKNAYSKFSTGLYC 195 (283)
T ss_dssp HHCSCTTSCEEEEECCC-CCS--TTHHHHHHHHHHHHHHHCTTSEEE
T ss_pred HhcCCCCCccEEEECCC-CCC--CcHHHHHHHHHHHhCccCCCeEEE
Confidence 23357999999984 321 2355566655543 556899877
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00037 Score=66.67 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=59.8
Q ss_pred hhcChHhHHHHHHHHHhccC--CCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEE
Q 015306 100 MLKDVVRTKSYQNVIYQNKF--LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175 (409)
Q Consensus 100 ~l~d~~r~~~~~~~l~~~~~--~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~ 175 (409)
+|.|..-.+...+++.-... ..++..|||||.|.|.++..+++. .+++|+++|+++ ++...++.. . .+++++
T Consensus 34 FL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~i 109 (353)
T 1i4w_A 34 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQI 109 (353)
T ss_dssp CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEE
T ss_pred ccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEE
Confidence 56666555555555431100 014689999999999999999985 467999999999 999988876 2 256999
Q ss_pred EEccccccc
Q 015306 176 LKGKIEEIE 184 (409)
Q Consensus 176 ~~~d~~~~~ 184 (409)
+.+|+.++.
T Consensus 110 i~~D~l~~~ 118 (353)
T 1i4w_A 110 LKRDPYDWS 118 (353)
T ss_dssp ECSCTTCHH
T ss_pred EECCccchh
Confidence 999997653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00037 Score=63.92 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=42.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF 169 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~ 169 (409)
..++..|||.+||+|..+..+.+.|. +++|+|+++ .++.|++++..+++
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhccC
Confidence 36889999999999999999999865 999999999 99999999986653
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0011 Score=64.11 Aligned_cols=69 Identities=26% Similarity=0.149 Sum_probs=57.1
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--------CCCceeEEE
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------PVTKVDIII 194 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~DvVv 194 (409)
.+|||+.||.|.+++.+.++|...|.++|+++ +++..+.+.. ...++++|+.++.. ....+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 47999999999999999999998899999999 8888777642 25788899988742 236899999
Q ss_pred Eecc
Q 015306 195 SEWM 198 (409)
Q Consensus 195 s~~~ 198 (409)
..+.
T Consensus 77 ggpP 80 (376)
T 3g7u_A 77 GGPP 80 (376)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8764
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0011 Score=62.38 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CC----CC
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP----VT 188 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~----~~ 188 (409)
+...+|.+++|..||.|..+..+++. | ..+|+|+|.++ +++.|+ ++ ..+++++++++..++. ++ .+
T Consensus 53 L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~g~~~ 127 (347)
T 3tka_A 53 LNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAERDLIG 127 (347)
T ss_dssp TCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHTTCTT
T ss_pred hCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhcCCCC
Confidence 45678999999999999999999984 3 56999999999 999884 33 2368999999998874 11 13
Q ss_pred ceeEEEEec
Q 015306 189 KVDIIISEW 197 (409)
Q Consensus 189 ~~DvVvs~~ 197 (409)
++|.|+.+.
T Consensus 128 ~vDgILfDL 136 (347)
T 3tka_A 128 KIDGILLDL 136 (347)
T ss_dssp CEEEEEEEC
T ss_pred cccEEEECC
Confidence 699999874
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0049 Score=58.52 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcC---------------
Q 015306 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANG--------------- 168 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~--------------- 168 (409)
.|+..+.+.+.+.....+...|+.||||....+..+... +..+++-||.-++++.-++.+...+
T Consensus 80 ~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~ 159 (334)
T 1rjd_A 80 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK 159 (334)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccc
Confidence 345555555444332245678999999999999988873 4457888888447777777776652
Q ss_pred -----CCCcEEEEEccccccc--------C-CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 169 -----FSNVITVLKGKIEEIE--------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 169 -----~~~~i~~~~~d~~~~~--------~-~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+++..++.+|+.+.. . ......+++++.+..++. +.....+++.+.... |+|.++
T Consensus 160 ~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~-~~~~~~ll~~ia~~~-~~~~~v 229 (334)
T 1rjd_A 160 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMH-NNESQLLINTIMSKF-SHGLWI 229 (334)
T ss_dssp TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHC-SSEEEE
T ss_pred cccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCC-HHHHHHHHHHHHhhC-CCcEEE
Confidence 1367999999998742 1 235689999998766664 456678888887766 777664
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00049 Score=65.81 Aligned_cols=69 Identities=22% Similarity=0.184 Sum_probs=56.1
Q ss_pred CEEEEEcCCCChHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---CCCceeEEEEec
Q 015306 124 KVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDIIISEW 197 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~DvVvs~~ 197 (409)
.+|||+.||.|.+++.+.++| +..|+++|+++ +++..+.++.. ..++.+|+.++.. +...+|+|+..+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 579999999999999999998 56899999999 99988887632 3477899988752 212699999976
Q ss_pred c
Q 015306 198 M 198 (409)
Q Consensus 198 ~ 198 (409)
.
T Consensus 77 P 77 (343)
T 1g55_A 77 P 77 (343)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0023 Score=60.66 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEecc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~ 198 (409)
.+.+|||+.||.|.+++.+.++|+..|.++|+++ +++..+.+.... . .+|+.++... -..+|+|+..+.
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gpP 80 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECCC
Confidence 4579999999999999999999998999999999 999888886421 1 6888876522 236999999754
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0088 Score=57.49 Aligned_cols=98 Identities=23% Similarity=0.274 Sum_probs=64.9
Q ss_pred HHhccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-----cC
Q 015306 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-----EL 185 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~ 185 (409)
+.......++.+||.+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++. |.. .++..+-.++ ..
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEI 254 (371)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC---EEecCCccCHHHHHHHh
Confidence 33345678899999999986 788888888 6887899999999 88887653 332 2222211111 11
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+.+|+|+-.. + . ...+....+.|+++|+++.
T Consensus 255 ~~gg~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 287 (371)
T 1f8f_A 255 TDGGVNFALEST-G----S----PEILKQGVDALGILGKIAV 287 (371)
T ss_dssp TTSCEEEEEECS-C----C----HHHHHHHHHTEEEEEEEEE
T ss_pred cCCCCcEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 124799998532 1 1 2345666689999999874
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0085 Score=58.55 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=51.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHH-Hc-C-CCEEEEEecHH-HHHHHHHHHHH--cCCC-CcEEEEEccccc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCA-KA-G-AAHVYAVECSQ-MANMAKQIVEA--NGFS-NVITVLKGKIEE 182 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la-~~-g-~~~V~~vD~s~-~~~~a~~~~~~--~~~~-~~i~~~~~d~~~ 182 (409)
..++.+|+||||+.|..+..++ +. | ..+|+++|+++ ..+.+++++.. |+.. ++++++..-+.+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 3688999999999999999888 43 4 37999999999 99999999988 4333 568888766654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.048 Score=51.09 Aligned_cols=121 Identities=7% Similarity=0.051 Sum_probs=82.9
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC--CCcEEEEEcccc
Q 015306 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--SNVITVLKGKIE 181 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~ 181 (409)
.|+..+.+.+..... .....|++||||-=..+..+......+|+-||. | +++..++.+...+. ..+..++.+|+.
T Consensus 86 ~Rt~~~d~~v~~~~~-~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~ 163 (310)
T 2uyo_A 86 VRTNFFDTYFNNAVI-DGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLR 163 (310)
T ss_dssp HHHHHHHHHHHHHHH-TTCCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHH-hCCCeEEEeCCCCCchhhhccCCCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchH
Confidence 344444444443322 123579999999877755544211358999995 6 88888888876542 467899999998
Q ss_pred ccc---------CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 182 EIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 182 ~~~---------~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+ . +.....=+++++.+.+++.. .....+++.+...+.||+.++...
T Consensus 164 d-~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~-~~~~~ll~~l~~~~~~gs~l~~d~ 218 (310)
T 2uyo_A 164 Q-DWPPALRSAGFDPSARTAWLAEGLLMYLPA-TAQDGLFTEIGGLSAVGSRIAVET 218 (310)
T ss_dssp S-CHHHHHHHTTCCTTSCEEEEECSCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred h-hHHHHHHhccCCCCCCEEEEEechHhhCCH-HHHHHHHHHHHHhCCCCeEEEEEe
Confidence 7 3 12245668888877666654 467889999988889999988654
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.01 Score=57.68 Aligned_cols=101 Identities=19% Similarity=0.137 Sum_probs=63.8
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-----c--CCC
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-----E--LPV 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~--~~~ 187 (409)
....+|.+||.+|||. |.++..+|+ .|+.+|+++|.++ .++.+++ .|. +++..+-.++ . ...
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~~~~~~~g 252 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF----ETIDLRNSAPLRDQIDQILGK 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC----EEEETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC----cEEcCCCcchHHHHHHHHhCC
Confidence 5678899999999987 888888888 6877999999998 7777654 343 2332221111 1 122
Q ss_pred CceeEEEEeccccccc-C-----hhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 TKVDIIISEWMGYFLL-F-----ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~-~-----~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+|+|+-.. +.... + .......+....++|++||+++.
T Consensus 253 ~g~Dvvid~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~ 297 (398)
T 2dph_A 253 PEVDCGVDAV-GFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI 297 (398)
T ss_dssp SCEEEEEECS-CTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred CCCCEEEECC-CCccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence 3699998532 11000 0 00012345666689999999874
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.009 Score=56.50 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=54.5
Q ss_pred CCEEEEEcCCCChHHHHHHHcCC--CEE-EEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---CCCceeEEEE
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGA--AHV-YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDIIIS 195 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~--~~V-~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~DvVvs 195 (409)
..+|+|+.||.|.+++.+.++|. ..| .++|+++ +++..+.+... .++.+|+.++.. +...+|+++.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-------~~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-------EVQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-------CCBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-------CcccCChhhcCHHHhccCCCCEEEe
Confidence 45899999999999999999884 677 8999999 98888887632 156788887752 2236999998
Q ss_pred ecc
Q 015306 196 EWM 198 (409)
Q Consensus 196 ~~~ 198 (409)
.+.
T Consensus 83 gpP 85 (327)
T 3qv2_A 83 SPP 85 (327)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.034 Score=54.10 Aligned_cols=98 Identities=18% Similarity=0.102 Sum_probs=62.2
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCc
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTK 189 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~ 189 (409)
...+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -++.+++. |.. .++..+-.++. .....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHHhCCCC
Confidence 578899999999875 777888888 6888999999999 88887654 332 22222111111 12247
Q ss_pred eeEEEEecccccccCh-hHHHHHHHHHHhcccCCeEEEcc
Q 015306 190 VDIIISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|+|+-.. ... .....++..+.+.++++|+++..
T Consensus 283 ~D~vid~~-----g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 283 AKLFLEAT-----GVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp CSEEEECS-----SCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred CCEEEECC-----CCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 99998521 111 13334444444556999998743
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.01 Score=57.15 Aligned_cols=97 Identities=22% Similarity=0.290 Sum_probs=63.2
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-c----CCCCc
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E----LPVTK 189 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~----~~~~~ 189 (409)
....+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ ..+.+++. |....+.....|..+. . ...+.
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GATATVDPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCSEEECTTSSCHHHHHHSTTSSSTTC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCCEEECCCCcCHHHHHHhhhhccCCC
Confidence 4578899999999876 778888888 6888999999999 88877663 4321111111121111 0 22248
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+|+-.. + . ...+....++|++||+++.
T Consensus 254 ~Dvvid~~-G----~----~~~~~~~~~~l~~~G~vv~ 282 (370)
T 4ej6_A 254 VDVVIECA-G----V----AETVKQSTRLAKAGGTVVI 282 (370)
T ss_dssp EEEEEECS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEECC-C----C----HHHHHHHHHHhccCCEEEE
Confidence 99998521 1 1 1345566689999999874
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.036 Score=51.56 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCCChHHHHHHH----cC-CC--EEEEEecHH----------HHHHHHHHHHHcC-C-CC--cEEEEEccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAK----AG-AA--HVYAVECSQ----------MANMAKQIVEANG-F-SN--VITVLKGKI 180 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~----~g-~~--~V~~vD~s~----------~~~~a~~~~~~~~-~-~~--~i~~~~~d~ 180 (409)
+.-+|||+|-|+|...+...+ .+ .. +++++|..+ ..+.......... + .. .+++..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 446899999999976543332 22 22 567777521 1222222222211 0 12 246788898
Q ss_pred cccc--CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 181 EEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 181 ~~~~--~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+.- ++..+||+|+.+.+...-..+---+.++..+.++++|||++.-
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 7643 3445899999876433222222236899999999999999873
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.018 Score=53.54 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCE--EEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC----CCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAH--VYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP----VTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~--V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~DvV 193 (409)
....+|+|+.||.|.+++.+.++|... |.++|+++ +++..+.+.. + ..++.+|+.++... .+.+|+|
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~-~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----G-KIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----T-CEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----C-CceeCCChHHccHHHhcccCCcCEE
Confidence 456699999999999999999999766 79999999 8877666542 2 46788999887521 1469999
Q ss_pred EEec
Q 015306 194 ISEW 197 (409)
Q Consensus 194 vs~~ 197 (409)
+..+
T Consensus 88 ~ggp 91 (295)
T 2qrv_A 88 IGGS 91 (295)
T ss_dssp EECC
T ss_pred EecC
Confidence 9864
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.011 Score=55.77 Aligned_cols=68 Identities=25% Similarity=0.219 Sum_probs=55.2
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEecc
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~ 198 (409)
.+|||+-||.|.+++-+.++|..-|.++|+++ +++.-+.+.. -+++.+|+.++... -..+|+++..+.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~~~~~~D~l~ggpP 70 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGGPP 70 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHhhCCcccEEEecCC
Confidence 37999999999999999999998899999999 8887776642 25788999987632 257999998643
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0075 Score=57.23 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=54.2
Q ss_pred CEEEEEcCCCChHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---CCCceeEEEEec
Q 015306 124 KVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDIIISEW 197 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~DvVvs~~ 197 (409)
.+|+|+.||.|.+++.+.++|. ..|.++|+++ +++..+.+... ..++.+|+.++.. +...+|+++..+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~~~~~D~l~ggp 77 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIKKWNVDTILMSP 77 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhccCCCCEEEecC
Confidence 4799999999999999999886 6789999999 88877776532 3467889888752 223699999865
Q ss_pred c
Q 015306 198 M 198 (409)
Q Consensus 198 ~ 198 (409)
.
T Consensus 78 P 78 (333)
T 4h0n_A 78 P 78 (333)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.021 Score=54.40 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=63.0
Q ss_pred ccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCC
Q 015306 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPV 187 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 187 (409)
.....+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++. |.. .++..+-.++. ...
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~t~g 233 (352)
T 3fpc_A 161 LANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT---DIINYKNGDIVEQILKATDG 233 (352)
T ss_dssp HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC---EEECGGGSCHHHHHHHHTTT
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc---eEEcCCCcCHHHHHHHHcCC
Confidence 35678899999999876 788888888 6777899999998 88877663 432 22222111111 122
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+|+|+-.. + .. ..+....+.|+++|+++.
T Consensus 234 ~g~D~v~d~~-g----~~----~~~~~~~~~l~~~G~~v~ 264 (352)
T 3fpc_A 234 KGVDKVVIAG-G----DV----HTFAQAVKMIKPGSDIGN 264 (352)
T ss_dssp CCEEEEEECS-S----CT----THHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECC-C----Ch----HHHHHHHHHHhcCCEEEE
Confidence 4799998521 1 11 234555688999999873
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.033 Score=53.11 Aligned_cols=94 Identities=29% Similarity=0.251 Sum_probs=62.1
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc---cccc----c-CC
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEI----E-LP 186 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~----~-~~ 186 (409)
....+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++..+ ..++ . ..
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHHh
Confidence 4578899999999886 788888888 6777999999998 7777764 3443 223222 1111 0 11
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+|+|+-.. + . ...+....++|+++|+++.
T Consensus 240 ~~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 271 (356)
T 1pl8_A 240 GCKPEVTIECT-G----A----EASIQAGIYATRSGGTLVL 271 (356)
T ss_dssp TSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEE
T ss_pred CCCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEEE
Confidence 15799998532 1 1 1234555688999999874
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0031 Score=74.89 Aligned_cols=101 Identities=16% Similarity=0.055 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cC-----CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AG-----AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDI 192 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g-----~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~Dv 192 (409)
.+..+|||||.|+|..+..+.+ .+ ..+++..|+|+ ..+.|++.+.... ++.-..|..+. .+....||+
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC-----CCE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccCCCCceeE
Confidence 3567999999999977655544 22 34789999999 8888887776421 33322233221 123467999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|++..+ ++....+...+..++++|||||.++..
T Consensus 1315 via~~v---l~~t~~~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A 1315 LVCNCA---LATLGDPAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp EEEECC-----------------------CCEEEEE
T ss_pred EEEccc---ccccccHHHHHHHHHHhcCCCcEEEEE
Confidence 998543 555567778889999999999998764
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.028 Score=53.78 Aligned_cols=97 Identities=23% Similarity=0.225 Sum_probs=64.1
Q ss_pred ccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc--ccccc------C
Q 015306 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEEIE------L 185 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~~~------~ 185 (409)
.....+|.+||-+|+|. |.++..+|+ .|+..|+++|.++ -++.+++. .. ..+.+...+ ..++. .
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~~v~~~t 248 (363)
T 3m6i_A 174 RAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAKKIVESF 248 (363)
T ss_dssp HHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHHHHHHHT
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHHHHHHHh
Confidence 35578899999999976 788888888 6886799999999 88888875 21 213332111 11111 1
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
....+|+|+-.. .. +..+....++|++||+++.
T Consensus 249 ~g~g~Dvvid~~-----g~----~~~~~~~~~~l~~~G~iv~ 281 (363)
T 3m6i_A 249 GGIEPAVALECT-----GV----ESSIAAAIWAVKFGGKVFV 281 (363)
T ss_dssp SSCCCSEEEECS-----CC----HHHHHHHHHHSCTTCEEEE
T ss_pred CCCCCCEEEECC-----CC----hHHHHHHHHHhcCCCEEEE
Confidence 235799998522 11 1234556689999999874
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.093 Score=47.58 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCChHHHHHHHc--------CCCEEEEEecHH-HH------------------------HHHHHHHH----
Q 015306 123 DKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQ-MA------------------------NMAKQIVE---- 165 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~--------g~~~V~~vD~s~-~~------------------------~~a~~~~~---- 165 (409)
+..|+|+|+-.|..+..++.. ...+|+++|.-+ +- +..++.+.
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 348999999999888876652 247999999322 11 11222221
Q ss_pred --HcCC-CCcEEEEEccccccc------CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 166 --ANGF-SNVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 166 --~~~~-~~~i~~~~~d~~~~~------~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
..+. .++|+++.+++.+.- .+.+++|+|..+. + . ++ .....++.+...|+|||++++..+
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D--~-Y~-~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-D--L-YE-PTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-C--C-HH-HHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-c--c-cc-hHHHHHHHHHHHhCCCcEEEEcCC
Confidence 2343 478999999997742 2345799999864 2 1 22 334567888899999999998764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0032 Score=59.57 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=48.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
..+|..|||..||+|..+..+.+.|. +.+|+|+++ .++.+++++...+.. ...+..|+.++
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i 311 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRI 311 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Confidence 47889999999999999999998865 999999999 999999988765532 33444444443
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.033 Score=53.25 Aligned_cols=97 Identities=22% Similarity=0.152 Sum_probs=63.0
Q ss_pred HHHhccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015306 113 VIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (409)
++.......+|.+||-+|+|. |.++..+++ .|+ +|++++.++ -++.+++. |.. .++..+..++.
T Consensus 180 al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~ 251 (363)
T 3uog_A 180 ALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL----GAD---HGINRLEEDWVERVYA 251 (363)
T ss_dssp HHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc----CCC---EEEcCCcccHHHHHHH
Confidence 333445678899999999876 778888888 677 999999998 88777653 432 22322211111
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+|+-.. + . . .+....+.|+++|+++.
T Consensus 252 ~~~g~g~D~vid~~-g----~-~----~~~~~~~~l~~~G~iv~ 285 (363)
T 3uog_A 252 LTGDRGADHILEIA-G----G-A----GLGQSLKAVAPDGRISV 285 (363)
T ss_dssp HHTTCCEEEEEEET-T----S-S----CHHHHHHHEEEEEEEEE
T ss_pred HhCCCCceEEEECC-C----h-H----HHHHHHHHhhcCCEEEE
Confidence 1224799998632 1 1 1 23445578999999874
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.024 Score=53.63 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=62.8
Q ss_pred ccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCc
Q 015306 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTK 189 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 189 (409)
.....++.+||-+|+|. |.++..+++ .|+ +|+++|.++ .++.+++ .|.. .++..+-.++. ...+.
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~g~ 232 (340)
T 3s2e_A 161 VTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE---VAVNARDTDPAAWLQKEIGG 232 (340)
T ss_dssp TTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSS
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHhCCC
Confidence 34678899999999986 888888888 677 999999999 8887765 3432 12222111111 01137
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|+|+-... . ...+....+.|+++|+++..
T Consensus 233 ~d~vid~~g-----~----~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 233 AHGVLVTAV-----S----PKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EEEEEESSC-----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEEeCC-----C----HHHHHHHHHHhccCCEEEEe
Confidence 899985321 1 23455666899999998743
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.03 Score=54.26 Aligned_cols=101 Identities=23% Similarity=0.189 Sum_probs=64.4
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-----cc--CCC
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-----IE--LPV 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~~--~~~ 187 (409)
....+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|. +++...-.+ +. ...
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~t~g 252 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAALLGE 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHHhCC
Confidence 4678899999999876 788888888 6887899999999 8887764 343 223221111 11 122
Q ss_pred CceeEEEEecccccc-------cChhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 TKVDIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l-------~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+|+|+-.. +.-. .+.......+....++|++||+++.
T Consensus 253 ~g~Dvvid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 298 (398)
T 1kol_A 253 PEVDCAVDAV-GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 298 (398)
T ss_dssp SCEEEEEECC-CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECC-CCcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence 4799998632 2100 0001122345666789999999874
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.024 Score=48.98 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=57.9
Q ss_pred HHhccCCCCCCEEEEEcCC--CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc----c-
Q 015306 114 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E- 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG--~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~- 184 (409)
+.......++++||..|++ .|..+..+++ .|+ +|+++|.++ ..+.+++ .+.. . ++..+-.+. .
T Consensus 30 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~--~-~~d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 30 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE--Y-VGDSRSVDFADEILE 101 (198)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS--E-EEETTCSTHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC--E-EeeCCcHHHHHHHHH
Confidence 3333467789999999953 3555555555 676 899999998 7766543 3432 1 121111111 0
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+|+... + . ..+....+.|+|+|+++.
T Consensus 102 ~~~~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~~v~ 135 (198)
T 1pqw_A 102 LTDGYGVDVVLNSL-A-----G----EAIQRGVQILAPGGRFIE 135 (198)
T ss_dssp HTTTCCEEEEEECC-C-----T----HHHHHHHHTEEEEEEEEE
T ss_pred HhCCCCCeEEEECC-c-----h----HHHHHHHHHhccCCEEEE
Confidence 1224699999642 1 1 235566689999999874
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.019 Score=55.23 Aligned_cols=98 Identities=22% Similarity=0.218 Sum_probs=64.0
Q ss_pred HHhccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc--cccc-----
Q 015306 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEEI----- 183 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~~----- 183 (409)
+.......++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -++.+++ .|.. .++... -.++
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---EFVNPKDHDKPIQEVIV 257 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---EEECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---EEEccccCchhHHHHHH
Confidence 33445678899999999975 788888888 6888999999999 8887764 3432 222211 0111
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCC-eEEEc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (409)
....+.+|+|+-.. + . ...+....+.|++| |+++.
T Consensus 258 ~~~~gg~D~vid~~-g----~----~~~~~~~~~~l~~g~G~iv~ 293 (378)
T 3uko_A 258 DLTDGGVDYSFECI-G----N----VSVMRAALECCHKGWGTSVI 293 (378)
T ss_dssp HHTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred HhcCCCCCEEEECC-C----C----HHHHHHHHHHhhccCCEEEE
Confidence 01224899998521 1 1 23455666899996 98874
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.039 Score=52.93 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=62.7
Q ss_pred hccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-----ccc-c-cC
Q 015306 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-----IEE-I-EL 185 (409)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~ 185 (409)
......++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++..+ +.+ + ..
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~ 257 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICEK 257 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHHHH
Confidence 345678899999999875 777888888 6877999999998 8777764 3442 122211 111 1 01
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCC-eEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (409)
..+.+|+|+-.. + . ...+....++|+++ |+++.
T Consensus 258 t~gg~Dvvid~~-g----~----~~~~~~~~~~l~~~~G~iv~ 291 (373)
T 1p0f_A 258 TNGGVDYAVECA-G----R----IETMMNALQSTYCGSGVTVV 291 (373)
T ss_dssp TTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred hCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCCEEEE
Confidence 124799998521 1 1 23355666899999 99874
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.038 Score=51.62 Aligned_cols=89 Identities=21% Similarity=0.149 Sum_probs=59.8
Q ss_pred hccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
......+|.+||-+|+|. |.++..+|+ .|+ +|++++ ++ -.+.+++. |. -.++. |...+ ...+|+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----Ga---~~v~~-d~~~v---~~g~Dv 202 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----GV---RHLYR-EPSQV---TQKYFA 202 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----TE---EEEES-SGGGC---CSCEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----CC---CEEEc-CHHHh---CCCccE
Confidence 456678999999999964 788888888 677 999999 88 88887653 32 12232 43333 478999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+-.. + . . . .....+.|+++|+++.
T Consensus 203 v~d~~-g----~-~---~-~~~~~~~l~~~G~~v~ 227 (315)
T 3goh_A 203 IFDAV-N----S-Q---N-AAALVPSLKANGHIIC 227 (315)
T ss_dssp EECC-----------------TTGGGEEEEEEEEE
T ss_pred EEECC-C----c-h---h-HHHHHHHhcCCCEEEE
Confidence 98421 1 1 1 1 1345689999999874
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.056 Score=51.31 Aligned_cols=89 Identities=21% Similarity=0.132 Sum_probs=61.4
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....+|.+||-+|+|. |.++..+|+ .|+ +|++++.++ -.+.+++ .|... ++ .+...+ . ..+|+|+
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~---v~-~~~~~~--~-~~~D~vi 239 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVKH---FY-TDPKQC--K-EELDFII 239 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCSE---EE-SSGGGC--C-SCEEEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCCe---ec-CCHHHH--h-cCCCEEE
Confidence 3678899999999976 788888888 677 999999999 8877765 34421 22 343332 2 3899998
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
-.. + ... .+....+.|+++|+++.
T Consensus 240 d~~-g----~~~----~~~~~~~~l~~~G~iv~ 263 (348)
T 3two_A 240 STI-P----THY----DLKDYLKLLTYNGDLAL 263 (348)
T ss_dssp ECC-C----SCC----CHHHHHTTEEEEEEEEE
T ss_pred ECC-C----cHH----HHHHHHHHHhcCCEEEE
Confidence 532 1 111 23455589999999884
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.038 Score=53.03 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=62.3
Q ss_pred hccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-----ccc-c-cC
Q 015306 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-----IEE-I-EL 185 (409)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~ 185 (409)
......++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++... +.+ + ..
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~ 258 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKM 258 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHH
Confidence 345678899999999875 777888888 6777999999998 8777764 3432 222211 111 0 01
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCC-eEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (409)
..+.+|+|+-.. + . ...+....++|+++ |+++.
T Consensus 259 ~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~ 292 (374)
T 1cdo_A 259 TNGGVDFSLECV-G----N----VGVMRNALESCLKGWGVSVL 292 (374)
T ss_dssp HTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred hCCCCCEEEECC-C----C----HHHHHHHHHHhhcCCcEEEE
Confidence 124799998532 1 1 13355666899999 99874
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.046 Score=52.42 Aligned_cols=96 Identities=23% Similarity=0.274 Sum_probs=62.5
Q ss_pred hccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-----ccc-c-cC
Q 015306 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-----IEE-I-EL 185 (409)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~ 185 (409)
......++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++. |.. .++... +.+ + ..
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~v~~~ 256 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLIEM 256 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEeccccccccHHHHHHHH
Confidence 345678899999999875 677778887 6877999999998 88877643 432 122211 111 0 01
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCC-eEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (409)
..+.+|+|+-.. + . ...+....++|+++ |+++.
T Consensus 257 ~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~ 290 (373)
T 2fzw_A 257 TDGGVDYSFECI-G----N----VKVMRAALEACHKGWGVSVV 290 (373)
T ss_dssp TTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred hCCCCCEEEECC-C----c----HHHHHHHHHhhccCCcEEEE
Confidence 124799998532 1 1 13355666899999 99874
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.043 Score=52.67 Aligned_cols=96 Identities=22% Similarity=0.240 Sum_probs=62.2
Q ss_pred hccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-----ccc-cc-C
Q 015306 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-----IEE-IE-L 185 (409)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~~-~ 185 (409)
......++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++..+ +.+ +. .
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~v~~~ 261 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVITEL 261 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---EEEccccccchHHHHHHHH
Confidence 345678899999999875 777888888 6777999999998 7777754 3432 122211 111 00 1
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCC-eEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (409)
..+.+|+|+-.. + . ...+....++|+++ |+++.
T Consensus 262 ~~~g~Dvvid~~-G----~----~~~~~~~~~~l~~~~G~iv~ 295 (376)
T 1e3i_A 262 TAGGVDYSLDCA-G----T----AQTLKAAVDCTVLGWGSCTV 295 (376)
T ss_dssp HTSCBSEEEESS-C----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred hCCCccEEEECC-C----C----HHHHHHHHHHhhcCCCEEEE
Confidence 124799998521 1 1 23455666899999 99874
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.047 Score=52.27 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=59.6
Q ss_pred CCCEEEEEc-CCC-ChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--cccc-c-cCCCCceeEE
Q 015306 122 KDKVVLDVG-AGT-GILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIEE-I-ELPVTKVDII 193 (409)
Q Consensus 122 ~~~~VLDlG-cG~-G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~~DvV 193 (409)
++.+||-+| +|. |.++..+|+. +..+|++++.++ -++.+++ .|.. .++.. +..+ + ....+.+|+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~~~~~~~v~~~~~~g~Dvv 243 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVIDHSKPLAAEVAALGLGAPAFV 243 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEECTTSCHHHHHHTTCSCCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCCHHHHHHHhcCCCceEE
Confidence 788999998 554 8889999985 666999999998 8877765 3432 12221 1111 1 1223579999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+-.. + -...+....++|+++|+++..
T Consensus 244 id~~--------g-~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 244 FSTT--------H-TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EECS--------C-HHHHHHHHHHHSCTTCEEEEC
T ss_pred EECC--------C-chhhHHHHHHHhcCCCEEEEE
Confidence 8521 1 123456666899999998843
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.87 E-value=0.053 Score=52.00 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=61.9
Q ss_pred hccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-----ccc-c-cC
Q 015306 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-----IEE-I-EL 185 (409)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~ 185 (409)
......++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|.. .++..+ +.+ + ..
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~ 257 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEM 257 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHH
Confidence 345678899999999875 777778887 6777999999998 8777754 3432 122211 111 0 01
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCC-eEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (409)
..+.+|+|+-.. + . ...+....++|+++ |+++.
T Consensus 258 ~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~ 291 (374)
T 2jhf_A 258 SNGGVDFSFEVI-G----R----LDTMVTALSCCQEAYGVSVI 291 (374)
T ss_dssp TTSCBSEEEECS-C----C----HHHHHHHHHHBCTTTCEEEE
T ss_pred hCCCCcEEEECC-C----C----HHHHHHHHHHhhcCCcEEEE
Confidence 124799998532 1 1 13345566889999 99874
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.04 Score=52.21 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=62.5
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc--ccc-cc--CCCCce
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEE-IE--LPVTKV 190 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~-~~--~~~~~~ 190 (409)
...++.+||-+|+|. |.++..+++ .|..+|+++|.++ -++.+++ .|... ++..+ ..+ +. .....+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~---~i~~~~~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADA---AVKSGAGAADAIRELTGGQGA 240 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSE---EEECSTTHHHHHHHHHGGGCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE---EEcCCCcHHHHHHHHhCCCCC
Confidence 568899999999976 788888888 5677999999999 8887765 34432 22221 111 00 112479
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|+-.. .. +..+....+.|+++|+++..
T Consensus 241 d~v~d~~-----G~----~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 241 TAVFDFV-----GA----QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEEESS-----CC----HHHHHHHHHHEEEEEEEEEC
T ss_pred eEEEECC-----CC----HHHHHHHHHHHhcCCEEEEE
Confidence 9998521 11 13456666899999998743
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.038 Score=52.29 Aligned_cols=96 Identities=17% Similarity=0.092 Sum_probs=61.2
Q ss_pred HHhccCCCCCCEEEEEcCCC--ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015306 114 IYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~--G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (409)
+.......++.+||-+|+|+ |.++..+++ .|+ +|++++.++ .++.+++. |.. .++...-.++.
T Consensus 136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----ga~---~~~~~~~~~~~~~~~~ 207 (340)
T 3gms_A 136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----GAA---YVIDTSTAPLYETVME 207 (340)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----CCc---EEEeCCcccHHHHHHH
Confidence 33446678999999999974 677777777 677 999999998 88877763 332 12222111111
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+|+... + .. .... ..+.|+++|+++.
T Consensus 208 ~~~~~g~Dvvid~~-g-----~~---~~~~-~~~~l~~~G~iv~ 241 (340)
T 3gms_A 208 LTNGIGADAAIDSI-G-----GP---DGNE-LAFSLRPNGHFLT 241 (340)
T ss_dssp HTTTSCEEEEEESS-C-----HH---HHHH-HHHTEEEEEEEEE
T ss_pred HhCCCCCcEEEECC-C-----Ch---hHHH-HHHHhcCCCEEEE
Confidence 1234799998632 1 11 1222 3378999999874
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.06 Score=53.51 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=55.3
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---------------
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--------------- 186 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------------- 186 (409)
..+|+|+.||.|.+++-+.++|...|.++|+++ +++.-+.+.... ....++.+|+.++...
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~ 164 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD---PATHHFNEDIRDITLSHQEGVSDEAAAEHIR 164 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC---TTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC---CCcceeccchhhhhhccccccchhhHHhhhh
Confidence 358999999999999999999988899999999 887777664211 1235677898876521
Q ss_pred --CCceeEEEEecc
Q 015306 187 --VTKVDIIISEWM 198 (409)
Q Consensus 187 --~~~~DvVvs~~~ 198 (409)
...+|+|+..+.
T Consensus 165 ~~~~~~Dvl~gGpP 178 (482)
T 3me5_A 165 QHIPEHDVLLAGFP 178 (482)
T ss_dssp HHSCCCSEEEEECC
T ss_pred hcCCCCCEEEecCC
Confidence 146899998754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.053 Score=51.53 Aligned_cols=93 Identities=24% Similarity=0.220 Sum_probs=60.0
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc-cc----cc--CC-
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EE----IE--LP- 186 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~----~~--~~- 186 (409)
....++.+||-+|+|. |.++..+++ .|+ +|+++|.++ .++.+++ .|.. .++..+- .+ +. ..
T Consensus 164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~~~ 235 (352)
T 1e3j_A 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIERIRS 235 (352)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHHhcc
Confidence 4567899999999875 777778887 677 599999998 8777764 3443 2222110 11 11 11
Q ss_pred --CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 --~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+|+|+-.. + . ...+....++|+++|+++.
T Consensus 236 ~~g~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 269 (352)
T 1e3j_A 236 AIGDLPNVTIDCS-G----N----EKCITIGINITRTGGTLML 269 (352)
T ss_dssp HSSSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEE
T ss_pred ccCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 25699998532 1 1 1234555688999999874
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.062 Score=50.59 Aligned_cols=97 Identities=20% Similarity=0.115 Sum_probs=59.2
Q ss_pred HHhccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015306 114 IYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (409)
+.......++++||..|+ |.|..+..+++ .|+ +|+++|.++ .++.+++ .+.. ..+-..+..++.
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~ 209 (333)
T 1v3u_A 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD--AAFNYKTVNSLEEALKK 209 (333)
T ss_dssp HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS--EEEETTSCSCHHHHHHH
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCc--EEEecCCHHHHHHHHHH
Confidence 334456788999999998 34566666666 677 999999988 7776633 2332 112111101110
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+.+|+++... + . ..+....+.|++||+++.
T Consensus 210 ~~~~~~d~vi~~~-g-------~--~~~~~~~~~l~~~G~~v~ 242 (333)
T 1v3u_A 210 ASPDGYDCYFDNV-G-------G--EFLNTVLSQMKDFGKIAI 242 (333)
T ss_dssp HCTTCEEEEEESS-C-------H--HHHHHHHTTEEEEEEEEE
T ss_pred HhCCCCeEEEECC-C-------h--HHHHHHHHHHhcCCEEEE
Confidence 1125799998643 1 1 125566689999999874
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.042 Score=52.74 Aligned_cols=92 Identities=25% Similarity=0.213 Sum_probs=59.8
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCceeE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~Dv 192 (409)
....+|.+||-+|+|. |.++..+|+ .|+ +|++++.++ .++.+++ .|.. .++...-.+ . ... +.+|+
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~-~g~Dv 260 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAHL-KSFDF 260 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTTT-TCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHhh-cCCCE
Confidence 3577899999999985 778888888 666 699999998 8887765 2432 222221111 1 112 57999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+-.. + ... .+....+.|+++|+++.
T Consensus 261 vid~~-g----~~~----~~~~~~~~l~~~G~iv~ 286 (369)
T 1uuf_A 261 ILNTV-A----APH----NLDDFTTLLKRDGTMTL 286 (369)
T ss_dssp EEECC-S----SCC----CHHHHHTTEEEEEEEEE
T ss_pred EEECC-C----CHH----HHHHHHHHhccCCEEEE
Confidence 98532 1 111 23445588999999874
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.081 Score=49.97 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=61.3
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (409)
....++.+||-.|+|. |.++..+++ .|+..++++|.++ -++.+++ .|....+.....+..+.. .....+|
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~~~g~d 231 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRELRFNQ 231 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcccCCcc
Confidence 5668899999999976 567777777 7888899999999 8777765 354321211111211111 1224678
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+... + . ...++...++|++||.++.
T Consensus 232 ~v~d~~-G----~----~~~~~~~~~~l~~~G~~v~ 258 (346)
T 4a2c_A 232 LILETA-G----V----PQTVELAVEIAGPHAQLAL 258 (346)
T ss_dssp EEEECS-C----S----HHHHHHHHHHCCTTCEEEE
T ss_pred cccccc-c----c----cchhhhhhheecCCeEEEE
Confidence 887521 1 1 2344555688999999874
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.15 Score=48.30 Aligned_cols=94 Identities=28% Similarity=0.273 Sum_probs=60.2
Q ss_pred ccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCC
Q 015306 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPV 187 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 187 (409)
.... ++.+||-+|+|. |.++..+++ .|+.+|++++.++ .++.+++. |.. .++..+-.++. ...
T Consensus 163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~v~~~~~g 234 (348)
T 2d8a_A 163 AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD---YVINPFEEDVVKEVMDITDG 234 (348)
T ss_dssp TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTTT
T ss_pred hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEECCCCcCHHHHHHHHcCC
Confidence 3456 899999999964 677777777 6776899999998 87777643 332 12222111110 122
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+|+|+... + . ...+....+.|+++|+++.
T Consensus 235 ~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 265 (348)
T 2d8a_A 235 NGVDVFLEFS-G----A----PKALEQGLQAVTPAGRVSL 265 (348)
T ss_dssp SCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 4699998632 1 1 1334556688999999874
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.047 Score=51.46 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=62.0
Q ss_pred HHHhccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----
Q 015306 113 VIYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---- 184 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 184 (409)
++.......++++||-.|+ |.|..+..+++ .|+ +|++++.++ -++.+.+ ..|.. .++...-.++.
T Consensus 140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~---~~g~~---~~~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVE---ELGFD---GAIDYKNEDLAAGLK 212 (336)
T ss_dssp HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TTCCS---EEEETTTSCHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcCCC---EEEECCCHHHHHHHH
Confidence 3434466789999999998 34677777777 677 999999988 7776622 23432 12221111110
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+.+|+|+... + . ..+....+.|+++|+++.
T Consensus 213 ~~~~~~~d~vi~~~-g-------~--~~~~~~~~~l~~~G~iv~ 246 (336)
T 4b7c_A 213 RECPKGIDVFFDNV-G-------G--EILDTVLTRIAFKARIVL 246 (336)
T ss_dssp HHCTTCEEEEEESS-C-------H--HHHHHHHTTEEEEEEEEE
T ss_pred HhcCCCceEEEECC-C-------c--chHHHHHHHHhhCCEEEE
Confidence 1135799998632 1 1 245666789999999884
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.092 Score=50.50 Aligned_cols=94 Identities=24% Similarity=0.293 Sum_probs=60.8
Q ss_pred cC-CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc---cccc----c--
Q 015306 118 KF-LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEI----E-- 184 (409)
Q Consensus 118 ~~-~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~----~-- 184 (409)
.. ..+|.+||-+|+|. |.++..+|+ .|+.+|++++.++ .++.+++ .|.. .++..+ -.++ .
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~ 262 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDI 262 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHH
Confidence 45 67899999999764 777788887 6756999999998 8777764 3442 223322 1111 0
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+|+-.. + .. ..+....++|+++|+++.
T Consensus 263 ~~g~g~Dvvid~~-g----~~----~~~~~~~~~l~~~G~iv~ 296 (380)
T 1vj0_A 263 THGRGADFILEAT-G----DS----RALLEGSELLRRGGFYSV 296 (380)
T ss_dssp TTTSCEEEEEECS-S----CT----THHHHHHHHEEEEEEEEE
T ss_pred hCCCCCcEEEECC-C----CH----HHHHHHHHHHhcCCEEEE
Confidence 1223799998532 1 11 234455688999999874
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.075 Score=50.36 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=57.0
Q ss_pred CCCEEEEEc-CCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc--ccc-c-cCCCCceeEE
Q 015306 122 KDKVVLDVG-AGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEE-I-ELPVTKVDII 193 (409)
Q Consensus 122 ~~~~VLDlG-cG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~-~-~~~~~~~DvV 193 (409)
++.+||-+| +|. |.++..+++ .|+ +|++++.++ -++.+++. |.. .++..+ ..+ + ......+|+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM----GAD---IVLNHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH----TCS---EEECTTSCHHHHHHHHTCCCEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc---EEEECCccHHHHHHHhCCCCccEE
Confidence 799999994 543 777778887 677 999999988 88887763 332 122111 100 0 0123579999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+-.. + -...+....++|+++|+++.
T Consensus 222 ~d~~--------g-~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 222 FCTF--------N-TDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp EESS--------C-HHHHHHHHHHHEEEEEEEEE
T ss_pred EECC--------C-chHHHHHHHHHhccCCEEEE
Confidence 8521 1 12345566688999999863
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.08 Score=55.26 Aligned_cols=107 Identities=13% Similarity=0.093 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHc----------C---CCEEEEEecHH-HHHHHHH--------------HHHHc-----C
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA----------G---AAHVYAVECSQ-MANMAKQ--------------IVEAN-----G 168 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~----------g---~~~V~~vD~s~-~~~~a~~--------------~~~~~-----~ 168 (409)
+..+|+|+|.|+|...+.+.+. . .-+++++|..| ..+.+++ .+... |
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 4569999999999877666552 1 14799999955 3333332 12111 1
Q ss_pred -----CCC---cEEEEEccccccc--CC---CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 169 -----FSN---VITVLKGKIEEIE--LP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 169 -----~~~---~i~~~~~d~~~~~--~~---~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+ .++++.+|+.+.- +. ...+|.++.+.+......+--...++..+.++++|||.+...
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 210 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF 210 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 111 4678888887643 21 368999998754222222222367888899999999998743
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.067 Score=50.62 Aligned_cols=92 Identities=20% Similarity=0.111 Sum_probs=59.3
Q ss_pred cCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc----c--CCC
Q 015306 118 KFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E--LPV 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~~~ 187 (409)
....++.+||-+|+ |.|..+..+++ .|+ +|++++.++ .++.+++. |.. .++...-.++ . ...
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----ga~---~~~d~~~~~~~~~~~~~~~~ 233 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKAL----GAD---ETVNYTHPDWPKEVRRLTGG 233 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTSTTHHHHHHHHTTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CCC---EEEcCCcccHHHHHHHHhCC
Confidence 45678999999998 56777777777 676 999999998 88777642 332 1222111111 0 122
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+|+|+... + . . .+....+.|+++|+++.
T Consensus 234 ~~~d~vi~~~-g----~-~----~~~~~~~~l~~~G~~v~ 263 (343)
T 2eih_A 234 KGADKVVDHT-G----A-L----YFEGVIKATANGGRIAI 263 (343)
T ss_dssp TCEEEEEESS-C----S-S----SHHHHHHHEEEEEEEEE
T ss_pred CCceEEEECC-C----H-H----HHHHHHHhhccCCEEEE
Confidence 4799998642 1 1 1 24455678999999874
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.14 Score=47.97 Aligned_cols=97 Identities=21% Similarity=0.194 Sum_probs=61.5
Q ss_pred HHhccCCCCCCEEEEEcC-C-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015306 114 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (409)
+.......++.+||-.|+ | .|.++..+++ .|+ +|++++.++ -++.+++. |.. .++..+-.++.
T Consensus 132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~~~~ 203 (325)
T 3jyn_A 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----GAW---ETIDYSHEDVAKRVLE 203 (325)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC---EEEeCCCccHHHHHHH
Confidence 334456788999999983 3 4777777777 677 999999998 88877653 322 22222211111
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.....+|+|+... + . ..+....+.|+++|+++..
T Consensus 204 ~~~~~g~Dvvid~~-g----~-----~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 204 LTDGKKCPVVYDGV-G----Q-----DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp HTTTCCEEEEEESS-C----G-----GGHHHHHTTEEEEEEEEEC
T ss_pred HhCCCCceEEEECC-C----h-----HHHHHHHHHhcCCCEEEEE
Confidence 1235799998632 1 1 1344556899999998743
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.035 Score=52.61 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=59.0
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-c--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc----c-cccccCCCC
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-A--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG----K-IEEIELPVT 188 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~----d-~~~~~~~~~ 188 (409)
.. ++.+||-+|+|. |.++..+|+ . |+ +|++++.++ .++.+++. |.. .++.. + +..+. ...
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~-~g~ 237 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL----GAD---YVSEMKDAESLINKLT-DGL 237 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH----TCS---EEECHHHHHHHHHHHH-TTC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh----CCC---EEeccccchHHHHHhh-cCC
Confidence 55 899999999975 777888887 5 76 799999998 88877653 332 12211 1 11111 123
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+|+|+-.. + . ...+....++|+++|+++.
T Consensus 238 g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 267 (344)
T 2h6e_A 238 GASIAIDLV-G----T----EETTYNLGKLLAQEGAIIL 267 (344)
T ss_dssp CEEEEEESS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEECC-C----C----hHHHHHHHHHhhcCCEEEE
Confidence 799998532 1 1 1235556688999999874
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.1 Score=49.80 Aligned_cols=92 Identities=23% Similarity=0.203 Sum_probs=60.0
Q ss_pred cCCCCCCEEEEEc--CCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCC
Q 015306 118 KFLFKDKVVLDVG--AGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVT 188 (409)
Q Consensus 118 ~~~~~~~~VLDlG--cG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 188 (409)
....++.+||-+| .|.|.++..+++ .|+ +|++++.++ .++.+++ .|.. .++..+-.++. ....
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~~~ 230 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQEYPE 230 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHCTT
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHhcCC
Confidence 4567899999999 345788888888 677 899999998 7777665 3432 12222111110 1125
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+|+|+... + . ..+....+.|+++|+++.
T Consensus 231 g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~ 259 (362)
T 2c0c_A 231 GVDVVYESV-G----G-----AMFDLAVDALATKGRLIV 259 (362)
T ss_dssp CEEEEEECS-C----T-----HHHHHHHHHEEEEEEEEE
T ss_pred CCCEEEECC-C----H-----HHHHHHHHHHhcCCEEEE
Confidence 799998632 1 1 245566688999999873
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.14 Score=48.06 Aligned_cols=94 Identities=23% Similarity=0.245 Sum_probs=59.9
Q ss_pred hccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------C
Q 015306 116 QNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------L 185 (409)
Q Consensus 116 ~~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~ 185 (409)
......++.+||-+|+ |.|.++..+++ .|+ +|++++.++ -++.+++ .|.. .++..+-.++. .
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~ 213 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKFT 213 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHT
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHHh
Confidence 3346788999999994 34677777777 577 999999988 7777655 3432 22222211111 1
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
....+|+|+... +. ..+....+.|+++|+++.
T Consensus 214 ~~~g~D~vid~~-g~---------~~~~~~~~~l~~~G~iv~ 245 (334)
T 3qwb_A 214 NGKGVDASFDSV-GK---------DTFEISLAALKRKGVFVS 245 (334)
T ss_dssp TTSCEEEEEECC-GG---------GGHHHHHHHEEEEEEEEE
T ss_pred CCCCceEEEECC-Ch---------HHHHHHHHHhccCCEEEE
Confidence 235799998632 11 234555678999999874
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.11 Score=49.28 Aligned_cols=96 Identities=26% Similarity=0.277 Sum_probs=62.5
Q ss_pred HHHhccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----
Q 015306 113 VIYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---- 184 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 184 (409)
++.......++.+||-.|+ |.|.++..+++ .|+ +|++++.++ .++.+++. |.. .++..+ .++.
T Consensus 150 ~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~---~v~~~~-~~~~~~v~ 220 (342)
T 4eye_A 150 AYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GAD---IVLPLE-EGWAKAVR 220 (342)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS---EEEESS-TTHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc---EEecCc-hhHHHHHH
Confidence 3434456788999999997 34777888887 677 999999988 77777663 332 223222 2211
Q ss_pred --CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 --~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+|+... + . . .+....+.|+++|+++.
T Consensus 221 ~~~~~~g~Dvvid~~-g----~-~----~~~~~~~~l~~~G~iv~ 255 (342)
T 4eye_A 221 EATGGAGVDMVVDPI-G----G-P----AFDDAVRTLASEGRLLV 255 (342)
T ss_dssp HHTTTSCEEEEEESC-C-----------CHHHHHHTEEEEEEEEE
T ss_pred HHhCCCCceEEEECC-c----h-h----HHHHHHHhhcCCCEEEE
Confidence 1224799998632 1 1 1 34556689999999874
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.016 Score=55.10 Aligned_cols=93 Identities=16% Similarity=0.232 Sum_probs=58.8
Q ss_pred ccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCC
Q 015306 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVT 188 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 188 (409)
.... ++.+||-+|+|. |.++..+|+ .|+.+|++++.++ .++.+++. . + .++..+-.++. ....
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~~~ 230 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVTGS 230 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHHSS
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhcCC
Confidence 3456 899999999864 677777777 6776899999998 77766543 1 1 12221111110 0125
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+|+|+-.. + . ...+....+.|+++|+++.
T Consensus 231 g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 260 (343)
T 2dq4_A 231 GVEVLLEFS-G----N----EAAIHQGLMALIPGGEARI 260 (343)
T ss_dssp CEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred CCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 799998532 1 1 1334556688999999874
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.084 Score=49.89 Aligned_cols=97 Identities=19% Similarity=0.088 Sum_probs=60.5
Q ss_pred HHhccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-cccccc----
Q 015306 114 IYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIE---- 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~---- 184 (409)
+.......++++||-.|+ |.|..+..+++ .|+ +|++++.++ .++.+++. .|.. . ++.. +..++.
T Consensus 147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~---~g~~--~-~~d~~~~~~~~~~~~ 219 (345)
T 2j3h_A 147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTK---FGFD--D-AFNYKEESDLTAALK 219 (345)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---SCCS--E-EEETTSCSCSHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCc--e-EEecCCHHHHHHHHH
Confidence 333456788999999997 34677777777 676 899999998 77766532 2432 1 2211 111110
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+.+|+|+... +. ..+....+.|+++|+++.
T Consensus 220 ~~~~~~~d~vi~~~--------g~--~~~~~~~~~l~~~G~~v~ 253 (345)
T 2j3h_A 220 RCFPNGIDIYFENV--------GG--KMLDAVLVNMNMHGRIAV 253 (345)
T ss_dssp HHCTTCEEEEEESS--------CH--HHHHHHHTTEEEEEEEEE
T ss_pred HHhCCCCcEEEECC--------CH--HHHHHHHHHHhcCCEEEE
Confidence 1125799998642 11 245666789999999873
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.45 E-value=0.044 Score=50.84 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=57.5
Q ss_pred CCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc-ccccCCCCceeEEE
Q 015306 120 LFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIII 194 (409)
Q Consensus 120 ~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~DvVv 194 (409)
..++.+||-+|+ |.|.++..+++ .|+ +|++++.++ .++.+++ .|.. .++..+- .++.-.-+.+|+|+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~d~vi 194 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAWGGLDLVL 194 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHTTSEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHhcCceEEE
Confidence 778999999998 34677777777 676 999999988 7776654 3432 1222111 11110015799998
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. . +. ..+....+.|+++|+++.
T Consensus 195 d-~-g~---------~~~~~~~~~l~~~G~~v~ 216 (302)
T 1iz0_A 195 E-V-RG---------KEVEESLGLLAHGGRLVY 216 (302)
T ss_dssp E-C-SC---------TTHHHHHTTEEEEEEEEE
T ss_pred E-C-CH---------HHHHHHHHhhccCCEEEE
Confidence 6 3 32 124555689999999874
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.066 Score=49.73 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=41.3
Q ss_pred CcEEEEEccccccc--CCCCceeEEEEecccccccC---------------h---hHHHHHHHHHHhcccCCeEEEccCC
Q 015306 171 NVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLF---------------E---NMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 171 ~~i~~~~~d~~~~~--~~~~~~DvVvs~~~~~~l~~---------------~---~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
.+++++++|+.+.. +++++||+|++++. |.... + ..+..++.++.++|||||.++....
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPP-Y~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPP-YWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCC-CCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCC-CCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 35789999998842 45689999999984 32210 1 1234577888999999999875533
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.13 Score=48.91 Aligned_cols=97 Identities=21% Similarity=0.217 Sum_probs=59.7
Q ss_pred HHhccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015306 114 IYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (409)
+.......++++||-.|+ |.|..+..+++ .|+ +|++++.++ .++.+++ .+.. .++..+-.++.
T Consensus 162 l~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 162 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIKK 233 (351)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHHH
T ss_pred HHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCCC---EEEeCCCchHHHHHHH
Confidence 333456788999999997 34666666666 676 899999998 7776543 3432 12221111110
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.....+|+|+... + . ..+....++|+++|+++.-
T Consensus 234 ~~~~~~~D~vi~~~-G-------~--~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 234 YVGEKGIDIIIEML-A-------N--VNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp HHCTTCEEEEEESC-H-------H--HHHHHHHHHEEEEEEEEEC
T ss_pred HcCCCCcEEEEECC-C-------h--HHHHHHHHhccCCCEEEEE
Confidence 1224799998642 1 1 1244556899999998743
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.14 Score=48.78 Aligned_cols=94 Identities=19% Similarity=0.157 Sum_probs=59.3
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccc-cc--cCCCCcee
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EI--ELPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~--~~~~~~~D 191 (409)
....++.+||-+|+|. |.++..+++ .|+ +|++++.++ .++.+++. |.. .++..+-. ++ ... +.+|
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~v~~~~~~~~~~~~~~-~~~D 245 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYF-DTFD 245 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSC-SCEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc----CCC---EEEcCcCchHHHHHhh-cCCC
Confidence 4677899999999864 777777777 677 799999998 88877652 332 22222111 11 112 5799
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+-.. +.. .. ..+....++|+++|+++.
T Consensus 246 ~vid~~-g~~--~~----~~~~~~~~~l~~~G~iv~ 274 (360)
T 1piw_A 246 LIVVCA-SSL--TD----IDFNIMPKAMKVGGRIVS 274 (360)
T ss_dssp EEEECC-SCS--TT----CCTTTGGGGEEEEEEEEE
T ss_pred EEEECC-CCC--cH----HHHHHHHHHhcCCCEEEE
Confidence 998632 110 00 112344578999999874
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.26 Score=46.44 Aligned_cols=98 Identities=21% Similarity=0.048 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (409)
....+|.+||-+|+|. |.++..+++ .+..+|+++|.++ -++.+++ .|....+.....|..+.. .....+|
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~g~g~d 234 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITGGLGVQ 234 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTTSSCEE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcCCCCce
Confidence 4567899999999987 355555555 6777999999999 7776654 343322222222222110 1234677
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++.... . ...+....+.|+++|.++..
T Consensus 235 ~~~~~~~-----~----~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 235 SAIVCAV-----A----RIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp EEEECCS-----C----HHHHHHHHHTEEEEEEEEEC
T ss_pred EEEEecc-----C----cchhheeheeecCCceEEEE
Confidence 7775321 1 23345556899999998743
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.1 Score=49.44 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=58.8
Q ss_pred cCCCCCCEEEEEcCC--CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-ccccc-----CCC
Q 015306 118 KFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEEIE-----LPV 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG--~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~-----~~~ 187 (409)
....++++||.+|++ .|..+..+++ .|+ +|++++.++ .++.+++ .+.. .++... ..++. ...
T Consensus 165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~~~~~ 236 (347)
T 2hcy_A 165 ANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE---VFIDFTKEKDIVGAVLKATD 236 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC---EEEETTTCSCHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc---eEEecCccHhHHHHHHHHhC
Confidence 356789999999983 4666666666 676 999999988 7776654 3432 122111 11111 111
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+|+|+... + . ...+....+.|+++|+++.
T Consensus 237 ~~~D~vi~~~-g----~----~~~~~~~~~~l~~~G~iv~ 267 (347)
T 2hcy_A 237 GGAHGVINVS-V----S----EAAIEASTRYVRANGTTVL 267 (347)
T ss_dssp SCEEEEEECS-S----C----HHHHHHHTTSEEEEEEEEE
T ss_pred CCCCEEEECC-C----c----HHHHHHHHHHHhcCCEEEE
Confidence 3799998643 1 1 2345667789999999874
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.08 E-value=0.094 Score=49.51 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=58.6
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCce
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (409)
...++.+||-+|+|. |.++..+++ .|+ +|++++.++ .++.+++ .|.. .++...-.++. .. +.+
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~d~~~~~~~~~~~~~~-~~~ 231 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKV-GGV 231 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHH-SSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC---EEecCCCccHHHHHHHHh-CCC
Confidence 567899999999964 777777777 676 999999998 7777654 3432 12211101110 11 469
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+... + . ...+....++|+++|+++.
T Consensus 232 d~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 259 (339)
T 1rjw_A 232 HAAVVTA-V----S----KPAFQSAYNSIRRGGACVL 259 (339)
T ss_dssp EEEEESS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred CEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 9998632 1 1 1234556688999999874
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.085 Score=49.46 Aligned_cols=93 Identities=20% Similarity=0.206 Sum_probs=58.0
Q ss_pred ccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc----c--CC
Q 015306 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E--LP 186 (409)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~~ 186 (409)
.....++++||-.|+ |.|..+..+++ .|+ +|++++.++ .++.+++. +.. . ++..+-.+. . ..
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~~--~-~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW--Q-VINYREEDLVERLKEITG 206 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS--E-EEETTTSCHHHHHHHHTT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCC--E-EEECCCccHHHHHHHHhC
Confidence 456778999999994 34566666666 677 999999998 77777652 322 1 222111111 0 11
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+|+|+... + . ..+....+.|+++|+++.
T Consensus 207 ~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~iv~ 237 (327)
T 1qor_A 207 GKKVRVVYDSV-G-----R----DTWERSLDCLQRRGLMVS 237 (327)
T ss_dssp TCCEEEEEECS-C-----G----GGHHHHHHTEEEEEEEEE
T ss_pred CCCceEEEECC-c-----h----HHHHHHHHHhcCCCEEEE
Confidence 24699998642 1 1 234556688999999874
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.17 Score=47.49 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=59.0
Q ss_pred ccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CC
Q 015306 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LP 186 (409)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~ 186 (409)
.....++.+||-.|+ |.|..+..+++ .|+ +|++++.++ .++.+++. +.. . ++..+-.+.. ..
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----g~~--~-~~d~~~~~~~~~i~~~~~ 211 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKL----GCH--H-TINYSTQDFAEVVREITG 211 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS--E-EEETTTSCHHHHHHHHHT
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC--E-EEECCCHHHHHHHHHHhC
Confidence 456778999999995 45777776666 676 999999998 87777652 322 1 2221111110 11
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+|+|+... +. ..+....+.|+++|+++.
T Consensus 212 ~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~iv~ 242 (333)
T 1wly_A 212 GKGVDVVYDSI-GK---------DTLQKSLDCLRPRGMCAA 242 (333)
T ss_dssp TCCEEEEEECS-CT---------TTHHHHHHTEEEEEEEEE
T ss_pred CCCCeEEEECC-cH---------HHHHHHHHhhccCCEEEE
Confidence 24699998643 21 224555688999999874
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.38 Score=44.81 Aligned_cols=94 Identities=22% Similarity=0.220 Sum_probs=58.3
Q ss_pred hccCCCCCCEEEEEc-CCC-ChHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccc-ccCCCCcee
Q 015306 116 QNKFLFKDKVVLDVG-AGT-GILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVD 191 (409)
Q Consensus 116 ~~~~~~~~~~VLDlG-cG~-G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D 191 (409)
......+|.+||-+| +|. |.++..+++ .|+ +|++++.++-.+.+++ .|... ++..+-.+ +...-..+|
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~~~~~~~----lGa~~---~i~~~~~~~~~~~~~g~D 217 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRNHAFLKA----LGAEQ---CINYHEEDFLLAISTPVD 217 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHHHHHHHH----HTCSE---EEETTTSCHHHHCCSCEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccchHHHHHH----cCCCE---EEeCCCcchhhhhccCCC
Confidence 346678999999997 554 788888888 677 8999974435555544 35432 23222211 111125799
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+-.. + . +.+ ....++|+++|+++.
T Consensus 218 ~v~d~~-g-------~-~~~-~~~~~~l~~~G~iv~ 243 (321)
T 3tqh_A 218 AVIDLV-G-------G-DVG-IQSIDCLKETGCIVS 243 (321)
T ss_dssp EEEESS-C-------H-HHH-HHHGGGEEEEEEEEE
T ss_pred EEEECC-C-------c-HHH-HHHHHhccCCCEEEE
Confidence 998521 1 1 122 566789999999873
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.15 Score=48.37 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=59.1
Q ss_pred hccCCCCC--CEEEEEcCC--CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015306 116 QNKFLFKD--KVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (409)
Q Consensus 116 ~~~~~~~~--~~VLDlGcG--~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (409)
......++ .+||-.|++ .|..+..+++ .|+.+|++++.++ .++.+++. .|.. . ++..+-.++.
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~--~-~~d~~~~~~~~~~~~ 225 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD--A-AINYKKDNVAEQLRE 225 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS--E-EEETTTSCHHHHHHH
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc--e-EEecCchHHHHHHHH
Confidence 33567788 999999983 3566666666 6776999999988 76666542 2332 1 2221111110
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+.+|+++... + . ..+....++|+++|+++.
T Consensus 226 ~~~~~~d~vi~~~-G-------~--~~~~~~~~~l~~~G~iv~ 258 (357)
T 2zb4_A 226 SCPAGVDVYFDNV-G-------G--NISDTVISQMNENSHIIL 258 (357)
T ss_dssp HCTTCEEEEEESC-C-------H--HHHHHHHHTEEEEEEEEE
T ss_pred hcCCCCCEEEECC-C-------H--HHHHHHHHHhccCcEEEE
Confidence 1113799998642 1 1 345566689999999874
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.57 Score=44.89 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcccccccCCCCceeEEEEeccc
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.+.+||.|+.+.|.++..++.. .++.+.-|- ....++.|+..|++++ .+++... ..+ . ...+|+|+..+
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~--~-~~~~~~v~~~l-- 108 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD--Y-PQQPGVVLIKV-- 108 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC--C-CSSCSEEEEEC--
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc--c-ccCCCEEEEEc--
Confidence 4567999999999999888754 345554355 5567788999999864 3665432 111 2 37899999754
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
......+...+..+...|+||+.++
T Consensus 109 --pk~~~~l~~~L~~l~~~l~~~~~i~ 133 (375)
T 4dcm_A 109 --PKTLALLEQQLRALRKVVTSDTRII 133 (375)
T ss_dssp --CSCHHHHHHHHHHHHTTCCTTSEEE
T ss_pred --CCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 2334566777888889999999886
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.63 Score=37.53 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=53.6
Q ss_pred CCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015306 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (409)
Q Consensus 123 ~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs 195 (409)
..+|+-+|||. | .++..|.+.|. .|+++|.++ .++.+++ .+ +.++.+|..+.. ..-..+|+|++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 35789988875 3 23334444565 899999999 8776654 22 678888886643 12357999986
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..- . ......+-...+.+.|+..++
T Consensus 78 ~~~-----~-~~~n~~~~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 78 TIP-----N-GYEAGEIVASARAKNPDIEII 102 (140)
T ss_dssp CCS-----C-HHHHHHHHHHHHHHCSSSEEE
T ss_pred ECC-----C-hHHHHHHHHHHHHHCCCCeEE
Confidence 321 1 111122223345567777655
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.51 Score=48.95 Aligned_cols=107 Identities=20% Similarity=0.130 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHc-----------C--CCEEEEEec---HH-HHHHH-----------HHHHHHcCC----
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA-----------G--AAHVYAVEC---SQ-MANMA-----------KQIVEANGF---- 169 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~-----------g--~~~V~~vD~---s~-~~~~a-----------~~~~~~~~~---- 169 (409)
+.-+|||+|-|+|...+...+. . .-+++++|. +. .+..+ ++.......
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 4469999999999776655442 1 136999998 54 33322 122222110
Q ss_pred ---------CCcEEEEEccccccc--CC---CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 170 ---------SNVITVLKGKIEEIE--LP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 170 ---------~~~i~~~~~d~~~~~--~~---~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.-.+++..+|+.+.- +. ...||+++.+.+......+---..++..+.++++|||.+...
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 012456667776542 11 367999998764332222222367889999999999998743
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=2.5 Score=39.75 Aligned_cols=120 Identities=9% Similarity=0.122 Sum_probs=76.8
Q ss_pred HhHHHHHHHHHhccCCC-CCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHHHHHHHHHHHHHcC-------------
Q 015306 105 VRTKSYQNVIYQNKFLF-KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANG------------- 168 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~-~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~~~~~a~~~~~~~~------------- 168 (409)
.|+..+...+.+..... +...|+-||||.-.....+... ...+++=||.-++++.=++.+...+
T Consensus 72 ~Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~ 151 (334)
T 3iei_A 72 ARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSED 151 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhccccccc
Confidence 35555555554433322 4679999999998888887764 2457888888774443333333211
Q ss_pred ---------CCCcEEEEEccccccc----------CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 169 ---------FSNVITVLKGKIEEIE----------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 169 ---------~~~~i~~~~~d~~~~~----------~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
-+++..++.+|+.+.. +.....-+++++.+..++. +.....+++.+.... |+|.++
T Consensus 152 ~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~-~~~~~~ll~~ia~~f-~~~~~i 226 (334)
T 3iei_A 152 TLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMT-PEQSANLLKWAANSF-ERAMFI 226 (334)
T ss_dssp SCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHC-SSEEEE
T ss_pred ccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCC-HHHHHHHHHHHHHhC-CCceEE
Confidence 1356899999997731 3345677899998766554 456678888887766 455544
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.4 Score=45.22 Aligned_cols=93 Identities=26% Similarity=0.323 Sum_probs=59.2
Q ss_pred cCCCCCCEEEEEcCCC--ChHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-----cCCC
Q 015306 118 KFLFKDKVVLDVGAGT--GILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-----ELPV 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~--G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 187 (409)
....++.+||-.|+|+ |..+..+++ . |+ +|+++|.++ .++.+++. +.. . ++...-.+. ....
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~--~-~~~~~~~~~~~~~~~~~~ 237 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GAD--Y-VINASMQDPLAEIRRITE 237 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TCS--E-EEETTTSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CCC--E-EecCCCccHHHHHHHHhc
Confidence 5577899999999984 566666666 5 77 899999998 87777542 322 1 222111111 1112
Q ss_pred -CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 -TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 -~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+|+|+... + . ...+....++|+++|+++.
T Consensus 238 ~~~~d~vi~~~-g----~----~~~~~~~~~~l~~~G~iv~ 269 (347)
T 1jvb_A 238 SKGVDAVIDLN-N----S----EKTLSVYPKALAKQGKYVM 269 (347)
T ss_dssp TSCEEEEEESC-C----C----HHHHTTGGGGEEEEEEEEE
T ss_pred CCCceEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 4799998642 1 1 1245556689999999874
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.18 Score=47.45 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=43.2
Q ss_pred CcEEEEEcccccc-c-CCCCceeEEEEecccccccC------------hhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 171 NVITVLKGKIEEI-E-LPVTKVDIIISEWMGYFLLF------------ENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 171 ~~i~~~~~d~~~~-~-~~~~~~DvVvs~~~~~~l~~------------~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+...++++|..+. . +++++||+|++++. |.... ...+...+..+.++|+|||.++....
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPP-Y~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPP-FALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCC-CSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCC-CCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 4578999998763 3 55689999999984 43321 12466788888999999999886533
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.37 Score=50.98 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCChHHHHHHHcC------CCEEEEEecHH-HHHHHHHHH
Q 015306 123 DKVVLDVGAGTGILSLFCAKAG------AAHVYAVECSQ-MANMAKQIV 164 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g------~~~V~~vD~s~-~~~~a~~~~ 164 (409)
..+||||-||.|.++.-+.++| ..-+.++|+++ +++.-+.|.
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 3589999999999999988876 56789999999 888777764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.18 Score=47.16 Aligned_cols=87 Identities=22% Similarity=0.193 Sum_probs=55.9
Q ss_pred CCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEEEec
Q 015306 123 DKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEW 197 (409)
Q Consensus 123 ~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~DvVvs~~ 197 (409)
+. ||-.|+ |.|.++..+++ .|+ +|++++.++ -.+.+++. |... .+-..+.... .+..+.+|+|+-.
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~--vi~~~~~~~~~~~~~~~~d~v~d~- 218 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL----GANR--ILSRDEFAESRPLEKQLWAGAIDT- 218 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TCSE--EEEGGGSSCCCSSCCCCEEEEEES-
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCCE--EEecCCHHHHHhhcCCCccEEEEC-
Confidence 45 999997 34788888888 677 999999998 88887653 4321 1111111111 1223579998742
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+ . ..+....+.|+++|+++.
T Consensus 219 ~g-------~--~~~~~~~~~l~~~G~iv~ 239 (324)
T 3nx4_A 219 VG-------D--KVLAKVLAQMNYGGCVAA 239 (324)
T ss_dssp SC-------H--HHHHHHHHTEEEEEEEEE
T ss_pred CC-------c--HHHHHHHHHHhcCCEEEE
Confidence 11 1 145666789999999874
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.2 Score=54.06 Aligned_cols=70 Identities=24% Similarity=0.193 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCChHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---------------C
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---------------L 185 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------------~ 185 (409)
..+++||.||.|.+++-+.++|. ..|.|+|+++ +++.-+.|.. + ..++.+|+.++. +
T Consensus 540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p-----~-~~~~~~DI~~l~~~~~~~di~~~~~~~l 613 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP-----G-STVFTEDCNILLKLVMAGETTNSRGQRL 613 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT-----T-SEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC-----C-CccccccHHHHhhhccchhhhhhhhhhc
Confidence 35899999999999999999997 6788999999 8877666542 2 456677764431 2
Q ss_pred C-CCceeEEEEecc
Q 015306 186 P-VTKVDIIISEWM 198 (409)
Q Consensus 186 ~-~~~~DvVvs~~~ 198 (409)
+ .+.+|+|+..+.
T Consensus 614 p~~~~vDll~GGpP 627 (1002)
T 3swr_A 614 PQKGDVEMLCGGPP 627 (1002)
T ss_dssp CCTTTCSEEEECCC
T ss_pred ccCCCeeEEEEcCC
Confidence 2 257999998653
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.17 Score=48.12 Aligned_cols=96 Identities=24% Similarity=0.259 Sum_probs=60.4
Q ss_pred HHhccCCCCCCEEEEEcC-C-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015306 114 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (409)
+.......++.+||-+|+ | .|.++..+++ .|+ +|++++.++ .++.+++. |.. .++..+-.++.
T Consensus 159 l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~~~~~~~~~~~~~~~~ 230 (353)
T 4dup_A 159 LFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL----GAK---RGINYRSEDFAAVIKA 230 (353)
T ss_dssp HTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC---EEEeCCchHHHHHHHH
Confidence 334456788999999953 3 4677777777 677 899999998 88877653 332 12222111110
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+|+... +. . .+....+.|+++|.++.
T Consensus 231 ~~~~g~Dvvid~~-g~-----~----~~~~~~~~l~~~G~iv~ 263 (353)
T 4dup_A 231 ETGQGVDIILDMI-GA-----A----YFERNIASLAKDGCLSI 263 (353)
T ss_dssp HHSSCEEEEEESC-CG-----G----GHHHHHHTEEEEEEEEE
T ss_pred HhCCCceEEEECC-CH-----H----HHHHHHHHhccCCEEEE
Confidence 1135799998632 11 1 24455688999999874
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=91.24 E-value=0.62 Score=45.82 Aligned_cols=92 Identities=21% Similarity=0.188 Sum_probs=59.5
Q ss_pred cCCCCCCEEEEEcC-C-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-----------
Q 015306 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----------- 182 (409)
Q Consensus 118 ~~~~~~~~VLDlGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----------- 182 (409)
....+|.+||-+|+ | .|.++..+|+ .|+ +|++++.++ -++.+++. |.. .++...-.+
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~d~~~~~~~~~~~ 295 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAM----GAE---AIIDRNAEGYRFWKDENTQD 295 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCC---EEEETTTTTCCSEEETTEEC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhh----CCc---EEEecCcCcccccccccccc
Confidence 45688999999997 3 4788888888 566 889999888 88877653 432 122211111
Q ss_pred ----------cc--CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 183 ----------IE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 183 ----------~~--~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+. .....+|+|+-.. +. ..+....++|+++|.++.
T Consensus 296 ~~~~~~~~~~i~~~t~g~g~Dvvid~~--------G~--~~~~~~~~~l~~~G~iv~ 342 (456)
T 3krt_A 296 PKEWKRFGKRIRELTGGEDIDIVFEHP--------GR--ETFGASVFVTRKGGTITT 342 (456)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEECS--------CH--HHHHHHHHHEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEcC--------Cc--hhHHHHHHHhhCCcEEEE
Confidence 10 1225799998522 11 245556689999999884
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.03 E-value=0.26 Score=46.19 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=37.8
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH----HHHHHHHHHHHc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ----MANMAKQIVEAN 167 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~----~~~~a~~~~~~~ 167 (409)
..+|..|||..||+|..+..+.+.|. +.+|+|+++ .++.+++++...
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC---
T ss_pred CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHc
Confidence 47889999999999999999999865 999999996 566777776544
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=1.9 Score=38.62 Aligned_cols=75 Identities=11% Similarity=0.086 Sum_probs=53.1
Q ss_pred CCCCEEEEEcCC--CC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C---
Q 015306 121 FKDKVVLDVGAG--TG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P--- 186 (409)
Q Consensus 121 ~~~~~VLDlGcG--~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~--- 186 (409)
..+++||-.|++ .| .++..+++.|+ +|+.++.++ ..+.+.+.....+- .++.++.+|+.+... .
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHH
Confidence 467899999987 44 35666777777 899998887 66666666554432 258999999987531 0
Q ss_pred --CCceeEEEEec
Q 015306 187 --VTKVDIIISEW 197 (409)
Q Consensus 187 --~~~~DvVvs~~ 197 (409)
.+.+|++|.+.
T Consensus 83 ~~~g~id~li~~A 95 (266)
T 3oig_A 83 EQVGVIHGIAHCI 95 (266)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCeeEEEEcc
Confidence 14789999864
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=90.85 E-value=0.34 Score=45.96 Aligned_cols=101 Identities=12% Similarity=0.164 Sum_probs=55.7
Q ss_pred HHHhccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc------cccc
Q 015306 113 VIYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG------KIEE 182 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~------d~~~ 182 (409)
++.......+|.+||-+|+ |.|.++..+|+ .|+..|..++.++ ..+. .+.+...|... ++.. ++.+
T Consensus 158 ~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~-~~~~~~lGa~~---vi~~~~~~~~~~~~ 233 (357)
T 1zsy_A 158 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKL-SDRLKSLGAEH---VITEEELRRPEMKN 233 (357)
T ss_dssp HHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHH-HHHHHHTTCSE---EEEHHHHHSGGGGG
T ss_pred HHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHH-HHHHHhcCCcE---EEecCcchHHHHHH
Confidence 3334456788999999997 34788888888 6775555665543 2111 12233345432 2221 1111
Q ss_pred ccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 183 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 183 ~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+.+|+|+-.. + . . .. ....++|+++|+++.
T Consensus 234 ~~~~~~~~Dvvid~~-g----~-~---~~-~~~~~~l~~~G~iv~ 268 (357)
T 1zsy_A 234 FFKDMPQPRLALNCV-G----G-K---SS-TELLRQLARGGTMVT 268 (357)
T ss_dssp TTSSSCCCSEEEESS-C----H-H---HH-HHHHTTSCTTCEEEE
T ss_pred HHhCCCCceEEEECC-C----c-H---HH-HHHHHhhCCCCEEEE
Confidence 111112599998521 1 1 1 12 234589999999874
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.83 E-value=0.83 Score=42.98 Aligned_cols=93 Identities=22% Similarity=0.235 Sum_probs=59.5
Q ss_pred HHhccCCCCCCEEEEEcC-C-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015306 114 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (409)
+.......++.+||-+|+ | .|.++..+++ .|+ +|+++ .++ -++.+++. |.. . +. +-.++.
T Consensus 142 l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~l----Ga~--~--i~-~~~~~~~~~~~ 210 (343)
T 3gaz_A 142 LVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDL----GAT--P--ID-ASREPEDYAAE 210 (343)
T ss_dssp HTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHH----TSE--E--EE-TTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHc----CCC--E--ec-cCCCHHHHHHH
Confidence 334456788999999994 3 4788888888 577 89999 777 77776553 432 1 22 222211
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+|+-.. + . ..+....+.|+++|.++.
T Consensus 211 ~~~~~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~ 244 (343)
T 3gaz_A 211 HTAGQGFDLVYDTL-G----G-----PVLDASFSAVKRFGHVVS 244 (343)
T ss_dssp HHTTSCEEEEEESS-C----T-----HHHHHHHHHEEEEEEEEE
T ss_pred HhcCCCceEEEECC-C----c-----HHHHHHHHHHhcCCeEEE
Confidence 1235799998532 1 1 234555678999999874
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.82 E-value=2.2 Score=38.61 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecH------------H-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS------------Q-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s------------~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (409)
..+++||-.|++.| .++..+++.|+ +|+.+|.+ . .++.+...+...+ .++.++.+|+.+..
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA 84 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence 46789999998876 34556666777 89999876 5 5555555555444 45899999998753
Q ss_pred C-----C-----CCceeEEEEecccccc---cChhHHH-----------HHHHHHHhcccCCeEEEc
Q 015306 185 L-----P-----VTKVDIIISEWMGYFL---LFENMLN-----------TVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~-----~-----~~~~DvVvs~~~~~~l---~~~~~~~-----------~~l~~~~~~LkpgG~lip 227 (409)
. . .+++|++|.+.-.... .....+. .+.+.+.+.++.+|.+|.
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 151 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIIT 151 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEE
Confidence 1 0 1479999986411110 1112222 344556667777887763
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.36 E-value=0.22 Score=47.61 Aligned_cols=91 Identities=23% Similarity=0.225 Sum_probs=54.4
Q ss_pred CCCCCEEEEEc-CC-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeE
Q 015306 120 LFKDKVVLDVG-AG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDI 192 (409)
Q Consensus 120 ~~~~~~VLDlG-cG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~Dv 192 (409)
..+|.+||-.| +| .|.++..+++ .|+ +|++++ ++ -.+.+++ .|.. .++..+-.++. .....+|+
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~~~g~D~ 251 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRK----LGAD---DVIDYKSGSVEEQLKSLKPFDF 251 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS---EEEETTSSCHHHHHHTSCCBSE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHH----cCCC---EEEECCchHHHHHHhhcCCCCE
Confidence 67899999999 34 4777888887 676 899998 55 6555543 3432 12221111110 11246999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+-.. + . . ...+....+.|+++|+++.
T Consensus 252 vid~~-g----~-~--~~~~~~~~~~l~~~G~iv~ 278 (375)
T 2vn8_A 252 ILDNV-G----G-S--TETWAPDFLKKWSGATYVT 278 (375)
T ss_dssp EEESS-C----T-T--HHHHGGGGBCSSSCCEEEE
T ss_pred EEECC-C----C-h--hhhhHHHHHhhcCCcEEEE
Confidence 98532 1 1 1 1123445578999999874
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.21 E-value=1.3 Score=39.55 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+ ..++.++.+|+.+... .
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQT 79 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999998876 34556666777 899999988 666555443 2458999999987531 0
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+++|++|.+.
T Consensus 80 ~g~id~lv~nA 90 (255)
T 4eso_A 80 LGAIDLLHINA 90 (255)
T ss_dssp HSSEEEEEECC
T ss_pred hCCCCEEEECC
Confidence 25799999863
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=90.00 E-value=0.47 Score=45.05 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=55.3
Q ss_pred HHhccCCCCC-CEEEEEcC-C-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc------cccc
Q 015306 114 IYQNKFLFKD-KVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG------KIEE 182 (409)
Q Consensus 114 l~~~~~~~~~-~~VLDlGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~------d~~~ 182 (409)
+.......+| .+||-+|+ | .|.++..+|+ .|+ +|+++..++ .+...++.+...|... ++.. ++.+
T Consensus 158 l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~---vi~~~~~~~~~~~~ 233 (364)
T 1gu7_A 158 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ---VITEDQNNSREFGP 233 (364)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE---EEEHHHHHCGGGHH
T ss_pred HHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCeE---EEecCccchHHHHH
Confidence 3333456788 99999997 3 4788888888 677 777776443 3111122223345432 2221 1111
Q ss_pred -cc-C---CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 183 -IE-L---PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 183 -~~-~---~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+. . ....+|+|+-.. + . .... ...++|+++|+++.
T Consensus 234 ~i~~~t~~~~~g~Dvvid~~-G-------~-~~~~-~~~~~l~~~G~~v~ 273 (364)
T 1gu7_A 234 TIKEWIKQSGGEAKLALNCV-G-------G-KSST-GIARKLNNNGLMLT 273 (364)
T ss_dssp HHHHHHHHHTCCEEEEEESS-C-------H-HHHH-HHHHTSCTTCEEEE
T ss_pred HHHHHhhccCCCceEEEECC-C-------c-hhHH-HHHHHhccCCEEEE
Confidence 10 0 125799998521 1 1 1223 44589999999874
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.78 E-value=1.6 Score=39.78 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=52.8
Q ss_pred CCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015306 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (409)
..+|+++|--|++.| ..+..+++.|+ +|+.+|.++ .++.+.+.+ + .++..+.+|+.+...
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHH
Confidence 368999999999887 45667777788 899999998 666554433 2 347788899877531
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
.-++.|++|.+.
T Consensus 100 ~~G~iDiLVNNA 111 (273)
T 4fgs_A 100 EAGRIDVLFVNA 111 (273)
T ss_dssp HHSCEEEEEECC
T ss_pred HcCCCCEEEECC
Confidence 136899999864
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=89.68 E-value=3.9 Score=37.29 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCC--C---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---------
Q 015306 121 FKDKVVLDVGAGT--G---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~--G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------- 185 (409)
..+++||-.|++. | .++..+++.|+ +|+.++.++ ..+.+.+.....+ ++.++.+|+.+...
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHH
Confidence 5788999999873 3 35666777777 799999887 6666666555443 48899999987531
Q ss_pred -CCCceeEEEEec
Q 015306 186 -PVTKVDIIISEW 197 (409)
Q Consensus 186 -~~~~~DvVvs~~ 197 (409)
..+++|++|.+.
T Consensus 105 ~~~g~iD~lVnnA 117 (293)
T 3grk_A 105 KKWGKLDFLVHAI 117 (293)
T ss_dssp HHTSCCSEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 125799999864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=89.43 E-value=1.4 Score=40.92 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=57.1
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCC-EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-ccCCCCceeEEEEecc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAA-HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVDIIISEWM 198 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~-~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~DvVvs~~~ 198 (409)
.+|.-||+|. |.++..+++.|.. +|+++|.++ .++.+.+ .|..+ -...+..+ .. ...|+|+....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~---~~~~~~~~~~~---~~aDvVilavp 103 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID---EGTTSIAKVED---FSPDFVMLSSP 103 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS---EEESCTTGGGG---GCCSEEEECSC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc---hhcCCHHHHhh---ccCCEEEEeCC
Confidence 6899999885 3556666667753 899999999 7766543 34321 12233333 21 56899996432
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
......++..+...|++|.+++
T Consensus 104 ------~~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 104 ------VRTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp ------GGGHHHHHHHHHHHSCTTCEEE
T ss_pred ------HHHHHHHHHHHhhccCCCcEEE
Confidence 2345677788888899988766
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=89.29 E-value=0.35 Score=45.30 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=41.1
Q ss_pred CcEEEE-Eccccccc--CCCCceeEEEEeccccccc---------ChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 171 NVITVL-KGKIEEIE--LPVTKVDIIISEWMGYFLL---------FENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 171 ~~i~~~-~~d~~~~~--~~~~~~DvVvs~~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
....++ ++|..+.. +++++||+|++++. |... ....+...+..+.++|+|||.++..
T Consensus 37 ~~~~l~i~gD~l~~L~~l~~~svDlI~tDPP-Y~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~ 105 (319)
T 1eg2_A 37 TTRHVYDVCDCLDTLAKLPDDSVQLIICDPP-YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 105 (319)
T ss_dssp CEEEEEEECCHHHHHHTSCTTCEEEEEECCC-SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccceEEECCcHHHHHHhCccCCcCEEEECCC-CCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 446788 99997642 55679999999984 4332 1124567777889999999998854
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=89.27 E-value=0.42 Score=45.26 Aligned_cols=94 Identities=21% Similarity=0.146 Sum_probs=57.7
Q ss_pred hccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc----c--C
Q 015306 116 QNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E--L 185 (409)
Q Consensus 116 ~~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~ 185 (409)
......++.+||-.|+ |.|..+..+++ .|+ +|++++.++ .++.+++. |.. . ++..+-.++ . .
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~--~-~~~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----GAA--A-GFNYKKEDFSEATLKFT 227 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS--E-EEETTTSCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCc--E-EEecCChHHHHHHHHHh
Confidence 3356778999999984 34666666666 666 899999998 77777442 322 1 222111111 0 1
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
....+|+|+... +. . .+....+.|+++|+++.
T Consensus 228 ~~~~~d~vi~~~-G~-----~----~~~~~~~~l~~~G~iv~ 259 (354)
T 2j8z_A 228 KGAGVNLILDCI-GG-----S----YWEKNVNCLALDGRWVL 259 (354)
T ss_dssp TTSCEEEEEESS-CG-----G----GHHHHHHHEEEEEEEEE
T ss_pred cCCCceEEEECC-Cc-----h----HHHHHHHhccCCCEEEE
Confidence 224799998643 11 1 23445588999999874
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=89.23 E-value=1.7 Score=41.71 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHc--------CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 122 KDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~--------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
..-.|+|+|+|+|.++..+.+. ...+++.||+|+ ..+.-++.+... ++|.+.. ++.+++ ...=+
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~---~~v~W~~-~l~~lp---~~~~~ 152 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWHD-SFEDVP---EGPAV 152 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEES-SGGGSC---CSSEE
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC---CCeEEeC-ChhhcC---CCCeE
Confidence 3457999999999998877652 133899999999 777666555432 2577653 344443 22457
Q ss_pred EEEecc
Q 015306 193 IISEWM 198 (409)
Q Consensus 193 Vvs~~~ 198 (409)
|+++-+
T Consensus 153 viANE~ 158 (387)
T 1zkd_A 153 ILANEY 158 (387)
T ss_dssp EEEESS
T ss_pred EEeccc
Confidence 787644
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=2.6 Score=38.42 Aligned_cols=104 Identities=25% Similarity=0.312 Sum_probs=64.6
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.+. ..+.+.+.....+ .++.++.+|+.+...
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999998876 34556666776 899988765 4444455454443 458999999987531
Q ss_pred CCCceeEEEEeccccc----cc--ChhHH-----------HHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYF----LL--FENML-----------NTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~----l~--~~~~~-----------~~~l~~~~~~LkpgG~lip 227 (409)
..+.+|++|.+.-... +. ....+ -.+.+.+.+.++.+|.+|.
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~ 180 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIIN 180 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEE
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEE
Confidence 0247999998631110 10 11112 2345566677778887763
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=89.16 E-value=1.4 Score=41.05 Aligned_cols=76 Identities=18% Similarity=0.175 Sum_probs=55.8
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..+++||-.|++.| .++..+++.|+ +|++++.++ .++.+.+.+...+...++.++.+|+.+... .
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 46789999998877 34556666777 899999998 777766666655543469999999987530 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+.+|++|.+.
T Consensus 85 ~g~id~lv~nA 95 (319)
T 3ioy_A 85 FGPVSILCNNA 95 (319)
T ss_dssp TCCEEEEEECC
T ss_pred CCCCCEEEECC
Confidence 25789999864
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=1.1 Score=41.85 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=66.6
Q ss_pred CCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-CC---------CcEEEEEccccc
Q 015306 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS---------NVITVLKGKIEE 182 (409)
Q Consensus 123 ~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~~---------~~i~~~~~d~~~ 182 (409)
..+|.-||+|+ | .++..+|..|. .|+.+|+++ .++.+.+++... + +. .++++. .|+.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~l~~ 83 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNLAE 83 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cchHh
Confidence 45899999997 2 56777778877 899999999 888776665432 1 11 123322 22222
Q ss_pred ccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCce
Q 015306 183 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 183 ~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
. -..+|+|+=. .......-..++..+.++++|+.++.-++-++
T Consensus 84 a---~~~ad~ViEa----v~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl 126 (319)
T 3ado_A 84 A---VEGVVHIQEC----VPENLDLKRKIFAQLDSIVDDRVVLSSSSSCL 126 (319)
T ss_dssp H---TTTEEEEEEC----CCSCHHHHHHHHHHHHTTCCSSSEEEECCSSC
T ss_pred H---hccCcEEeec----cccHHHHHHHHHHHHHHHhhhcceeehhhhhc
Confidence 1 2568988732 24445666789999999999998887555443
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=88.85 E-value=0.47 Score=45.02 Aligned_cols=93 Identities=22% Similarity=0.156 Sum_probs=57.0
Q ss_pred cCCC-CCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE-ccccccc-CCCCcee
Q 015306 118 KFLF-KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEEIE-LPVTKVD 191 (409)
Q Consensus 118 ~~~~-~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~-~~~~~~D 191 (409)
.... +|.+||-+|+|. |.++..+++ .|+ +|++++.++ ..+.+++ ..|... ++. .+...+. .. +.+|
T Consensus 175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~---~lGa~~---vi~~~~~~~~~~~~-~g~D 246 (357)
T 2cf5_A 175 FGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQ---DLGADD---YVIGSDQAKMSELA-DSLD 246 (357)
T ss_dssp TSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHT---TSCCSC---EEETTCHHHHHHST-TTEE
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH---HcCCce---eeccccHHHHHHhc-CCCC
Confidence 3456 899999999864 677777777 677 899999998 7766652 234322 222 1211111 22 4799
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+-.. + .... +....++|+++|+++.
T Consensus 247 ~vid~~-g----~~~~----~~~~~~~l~~~G~iv~ 273 (357)
T 2cf5_A 247 YVIDTV-P----VHHA----LEPYLSLLKLDGKLIL 273 (357)
T ss_dssp EEEECC-C----SCCC----SHHHHTTEEEEEEEEE
T ss_pred EEEECC-C----ChHH----HHHHHHHhccCCEEEE
Confidence 998532 1 1111 2334578999999874
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=88.78 E-value=1.2 Score=39.87 Aligned_cols=74 Identities=18% Similarity=0.108 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C----C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----V 187 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----~ 187 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... . .
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 46789999998887 35566666777 899999988 7766666666554 469999999977531 0 1
Q ss_pred CceeEEEEec
Q 015306 188 TKVDIIISEW 197 (409)
Q Consensus 188 ~~~DvVvs~~ 197 (409)
+++|++|.+.
T Consensus 82 g~id~lv~nA 91 (252)
T 3h7a_A 82 APLEVTIFNV 91 (252)
T ss_dssp SCEEEEEECC
T ss_pred CCceEEEECC
Confidence 5799999864
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=0.46 Score=45.26 Aligned_cols=93 Identities=23% Similarity=0.161 Sum_probs=55.4
Q ss_pred CCC-CCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ccccccCCCCceeEE
Q 015306 119 FLF-KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVDII 193 (409)
Q Consensus 119 ~~~-~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~DvV 193 (409)
... ++.+||-+|+|. |.++..+++ .|+ +|++++.++ .++.+++. .|.. .++.. +...+..-.+.+|+|
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~---lGa~---~v~~~~~~~~~~~~~~~~D~v 255 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKN---FGAD---SFLVSRDQEQMQAAAGTLDGI 255 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHT---SCCS---EEEETTCHHHHHHTTTCEEEE
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh---cCCc---eEEeccCHHHHHHhhCCCCEE
Confidence 455 899999999864 666777777 576 899999988 66665422 3432 12221 111111011479999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+... +. ... +....+.|+++|+++.
T Consensus 256 id~~-g~----~~~----~~~~~~~l~~~G~iv~ 280 (366)
T 1yqd_A 256 IDTV-SA----VHP----LLPLFGLLKSHGKLIL 280 (366)
T ss_dssp EECC-SS----CCC----SHHHHHHEEEEEEEEE
T ss_pred EECC-Cc----HHH----HHHHHHHHhcCCEEEE
Confidence 8632 11 111 2334477899999874
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=88.52 E-value=0.54 Score=44.51 Aligned_cols=91 Identities=15% Similarity=0.310 Sum_probs=55.7
Q ss_pred CCCCC------CEEEEEcCCC-ChHH-HHHH-H-cCCCEEEEEecHH----HHHHHHHHHHHcCCCCcEEEEEc---ccc
Q 015306 119 FLFKD------KVVLDVGAGT-GILS-LFCA-K-AGAAHVYAVECSQ----MANMAKQIVEANGFSNVITVLKG---KIE 181 (409)
Q Consensus 119 ~~~~~------~~VLDlGcG~-G~l~-~~la-~-~g~~~V~~vD~s~----~~~~a~~~~~~~~~~~~i~~~~~---d~~ 181 (409)
...++ .+||-+|+|. |.++ ..+| + .|+.+|++++.++ -++.++ ..|. +.+.. ++.
T Consensus 163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~----~lGa----~~v~~~~~~~~ 234 (357)
T 2b5w_A 163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE----ELDA----TYVDSRQTPVE 234 (357)
T ss_dssp HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH----HTTC----EEEETTTSCGG
T ss_pred CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH----HcCC----cccCCCccCHH
Confidence 45677 9999999864 6777 8888 6 6776699999865 244443 3443 22221 111
Q ss_pred cc-cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 182 EI-ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 182 ~~-~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++ ... +.+|+|+-.. + . ...+....++|+++|+++.
T Consensus 235 ~i~~~~-gg~Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv~ 271 (357)
T 2b5w_A 235 DVPDVY-EQMDFIYEAT-G----F----PKHAIQSVQALAPNGVGAL 271 (357)
T ss_dssp GHHHHS-CCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHhC-CCCCEEEECC-C----C----hHHHHHHHHHHhcCCEEEE
Confidence 11 012 3799998521 1 1 1234556688999999874
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=88.26 E-value=0.26 Score=47.00 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 122 ~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
++++||-+|+|. |..+..+++ .|+ +|+++|.++ .++.+++.... .+..+..+..++.-.-..+|+|+....
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~~ 239 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVL 239 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECCC
Confidence 458999999964 344444444 677 999999998 77777655432 122332222222100136899986421
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.... ..+.-+.....+.++|||+++-
T Consensus 240 ~~~~---~~~~li~~~~~~~~~~g~~ivd 265 (361)
T 1pjc_A 240 VPGR---RAPILVPASLVEQMRTGSVIVD 265 (361)
T ss_dssp CTTS---SCCCCBCHHHHTTSCTTCEEEE
T ss_pred cCCC---CCCeecCHHHHhhCCCCCEEEE
Confidence 1000 0000012233467899998873
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.23 E-value=2.9 Score=37.67 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecH-H-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.. . ..+.+.+.+...+ .++.++.+|+.+...
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 57889999998876 35566667777 78877553 3 5555555555444 458899999977531
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
..+++|++|.+.
T Consensus 106 ~~g~iD~lvnnA 117 (271)
T 3v2g_A 106 ALGGLDILVNSA 117 (271)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCcEEEECC
Confidence 024799999864
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.14 E-value=3 Score=37.24 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=52.2
Q ss_pred CCCCCCEEEEEcCC--CC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-------
Q 015306 119 FLFKDKVVLDVGAG--TG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL------- 185 (409)
Q Consensus 119 ~~~~~~~VLDlGcG--~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------- 185 (409)
...++++||-.|++ .| .++..+++.|+ +|+.++.++ ..+.+++.....+ .+.++.+|+.+...
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHH
Confidence 34678899999986 44 34555666677 899998877 6666666555543 37889999977531
Q ss_pred ---CCCceeEEEEec
Q 015306 186 ---PVTKVDIIISEW 197 (409)
Q Consensus 186 ---~~~~~DvVvs~~ 197 (409)
..+++|++|.+.
T Consensus 86 ~~~~~g~id~lv~nA 100 (271)
T 3ek2_A 86 LKTHWDSLDGLVHSI 100 (271)
T ss_dssp HHHHCSCEEEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 125799999864
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=88.03 E-value=0.91 Score=40.97 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (409)
..|+++|--|++.| ..+..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+.. -.
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 57899999998887 45667777887 899999998 7776666666665 34888999987743 12
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
-++.|++|.+.
T Consensus 84 ~G~iDiLVNNA 94 (255)
T 4g81_D 84 GIHVDILINNA 94 (255)
T ss_dssp TCCCCEEEECC
T ss_pred CCCCcEEEECC
Confidence 37899999874
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=2.5 Score=38.66 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCCC--Ch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C---
Q 015306 121 FKDKVVLDVGAGT--GI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P--- 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~--G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~--- 186 (409)
..+++||-.|++. |+ ++..+++.|+ +|+.++.++ ..+.+.+.....+ .+.++.+|+.+... .
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 103 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLA 103 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHH
Confidence 4578999999864 42 5666777777 799999887 6666665555443 26788999877531 0
Q ss_pred --CCceeEEEEec
Q 015306 187 --VTKVDIIISEW 197 (409)
Q Consensus 187 --~~~~DvVvs~~ 197 (409)
.+++|++|.+.
T Consensus 104 ~~~g~iD~lVnnA 116 (296)
T 3k31_A 104 EEWGSLDFVVHAV 116 (296)
T ss_dssp HHHSCCSEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 15799999864
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=87.82 E-value=1.8 Score=38.90 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=57.2
Q ss_pred CCCCEEEEEcCCCCh---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
.+|+++|--|++.|+ .+..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 478999999998883 5666777777 899999999 8777777777665 458899999977531 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
-++.|++|.+.
T Consensus 82 ~G~iDiLVNNA 92 (254)
T 4fn4_A 82 YSRIDVLCNNA 92 (254)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 26899999874
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.76 E-value=0.31 Score=45.53 Aligned_cols=94 Identities=21% Similarity=0.132 Sum_probs=55.8
Q ss_pred CCCCCC-EEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeE
Q 015306 119 FLFKDK-VVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDI 192 (409)
Q Consensus 119 ~~~~~~-~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~Dv 192 (409)
...++. +||-+|+ |.|.++..+++ .|+ +|++++.++ -++.+++ .|....+.....+.... ....+.+|+
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~d~ 219 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLDKQRWAA 219 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSEEEECC---------CCSCCEEE
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCcEEEecCCcHHHHHHHhcCCcccE
Confidence 456665 8999997 44778888888 676 799999988 7777754 34322111111110001 122357999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+-.. + . . .+....+.|+++|+++.
T Consensus 220 vid~~-g----~-~----~~~~~~~~l~~~G~~v~ 244 (328)
T 1xa0_A 220 AVDPV-G----G-R----TLATVLSRMRYGGAVAV 244 (328)
T ss_dssp EEECS-T----T-T----THHHHHHTEEEEEEEEE
T ss_pred EEECC-c----H-H----HHHHHHHhhccCCEEEE
Confidence 98532 1 1 1 23455688999999874
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.71 E-value=3.5 Score=37.59 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecH--H-HHHHHHHHHHHcCCCCcEEEEEcccccccC---------
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS--Q-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s--~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------- 185 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.+ . ..+.+.+.....+ .++.++.+|+.+...
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 123 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAR 123 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 46789999998776 34556666777 88888876 3 4555555555544 458899999977531
Q ss_pred -CCCceeEEEEeccccc-cc-----ChhHH-----------HHHHHHHHhcccCCeEEEc
Q 015306 186 -PVTKVDIIISEWMGYF-LL-----FENML-----------NTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 -~~~~~DvVvs~~~~~~-l~-----~~~~~-----------~~~l~~~~~~LkpgG~lip 227 (409)
..+.+|++|.+.-... .. ....+ -.+.+.+.+.++++|.||.
T Consensus 124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~ 183 (294)
T 3r3s_A 124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIIT 183 (294)
T ss_dssp HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEE
Confidence 0257999998641111 00 11111 2344556677777887763
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=87.48 E-value=1.6 Score=48.61 Aligned_cols=71 Identities=24% Similarity=0.199 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---------------
Q 015306 122 KDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--------------- 184 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------------- 184 (409)
...+++||.||.|.+++-+.++|. ..|.++|+++ +++.-+.+.. + ..++.+|+.++.
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p-----~-~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP-----G-TTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT-----T-SEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC-----C-CcEeeccHHHHhHhhhccchhhhhhhh
Confidence 346899999999999999999986 5789999999 8877666542 2 346666654321
Q ss_pred CC-CCceeEEEEecc
Q 015306 185 LP-VTKVDIIISEWM 198 (409)
Q Consensus 185 ~~-~~~~DvVvs~~~ 198 (409)
++ .+.+|+|+..+.
T Consensus 924 lp~~~~vDvl~GGpP 938 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPP 938 (1330)
T ss_dssp CCCTTTCSEEEECCC
T ss_pred ccccCccceEEecCC
Confidence 12 247999998653
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.28 E-value=3.6 Score=40.42 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=60.2
Q ss_pred CEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C------C-CCcEEEEEcccccccCC
Q 015306 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G------F-SNVITVLKGKIEEIELP 186 (409)
Q Consensus 124 ~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~------~-~~~i~~~~~d~~~~~~~ 186 (409)
.+|.-||+|. | .++..+++.|. .|+.+|.++ .++.+++.+..+ + . .....+ ..|...+
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~--- 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL--- 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGG---
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHH---
Confidence 5799999997 3 45666666776 899999999 887776543210 1 0 011222 4444221
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..+|+||.... ........++..+...++|+.+++-++
T Consensus 113 -~~aDlVIeaVp----e~~~~k~~v~~~l~~~~~~~~ii~snT 150 (463)
T 1zcj_A 113 -STVDLVVEAVF----EDMNLKKKVFAELSALCKPGAFLCTNT 150 (463)
T ss_dssp -TTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred -CCCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCeEEEeCC
Confidence 56899996431 222234567778888899998877433
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=87.14 E-value=2.3 Score=38.20 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecH-H-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.. . .++...+.+...+ .++.++.+|+.+...
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 56789999998876 34556666777 78877653 4 5555555555544 458999999987531
Q ss_pred CCCceeEEEEeccccccc-----ChhHH-----------HHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYFLL-----FENML-----------NTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~-----~~~~~-----------~~~l~~~~~~LkpgG~lip 227 (409)
..++.|++|.+.-..... ....+ -.+.+.+.+.++++|.+|.
T Consensus 93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~ 150 (270)
T 3is3_A 93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVL 150 (270)
T ss_dssp HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEE
Confidence 024789999763111100 11111 1344556677777887763
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=87.10 E-value=1.8 Score=38.76 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEE-ecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C----
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAV-ECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P---- 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~v-D~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 186 (409)
..+++||-.|++.| .++..+++.|+ +|+.+ +.++ ..+.+.+.+...+ .++.++.+|+.+... .
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD 82 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999998887 35566667777 77777 6555 5555555555443 458899999987531 0
Q ss_pred -CCceeEEEEec
Q 015306 187 -VTKVDIIISEW 197 (409)
Q Consensus 187 -~~~~DvVvs~~ 197 (409)
.++.|++|.+.
T Consensus 83 ~~g~id~lv~nA 94 (259)
T 3edm_A 83 KFGEIHGLVHVA 94 (259)
T ss_dssp HHCSEEEEEECC
T ss_pred HhCCCCEEEECC
Confidence 14799999864
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=87.07 E-value=4.8 Score=36.12 Aligned_cols=80 Identities=11% Similarity=-0.014 Sum_probs=53.5
Q ss_pred CEEEEEcCCCChHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 124 KVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~----~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
++||-.|+ |.++..+++ .|. +|++++-++ ....... ..++++.+|+.++. ...+|+||...-
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~--~~~~d~vi~~a~ 72 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS--LDGVTHLLISTA 72 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh--------CCCeEEEecccccc--cCCCCEEEECCC
Confidence 58999994 888777766 354 899999887 5443322 24899999999876 478999998532
Q ss_pred cccccChhHHHHHHHHHHh
Q 015306 199 GYFLLFENMLNTVLYARDK 217 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~ 217 (409)
...........+++++.+
T Consensus 73 -~~~~~~~~~~~l~~a~~~ 90 (286)
T 3ius_A 73 -PDSGGDPVLAALGDQIAA 90 (286)
T ss_dssp -CBTTBCHHHHHHHHHHHH
T ss_pred -ccccccHHHHHHHHHHHh
Confidence 111222334556666654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=86.93 E-value=0.36 Score=45.11 Aligned_cols=91 Identities=24% Similarity=0.219 Sum_probs=57.0
Q ss_pred CCCCCC-EEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-cc-cc-c-cCCCCc
Q 015306 119 FLFKDK-VVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KI-EE-I-ELPVTK 189 (409)
Q Consensus 119 ~~~~~~-~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~-~~-~-~~~~~~ 189 (409)
...++. +||-+|+ |.|.++..+++ .|+ +|++++.++ .++.+++. |... ++.. +. .+ . ....+.
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l----Ga~~---v~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GASE---VISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCSE---EEEHHHHCSSCCCSSCCCC
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCcE---EEECCCchHHHHHHhhcCC
Confidence 456665 8999997 34777777777 677 799999988 77777652 4321 2221 11 01 1 122357
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+|+-.. + . ..+....+.|+++|+++.
T Consensus 218 ~d~vid~~-g----~-----~~~~~~~~~l~~~G~iv~ 245 (330)
T 1tt7_A 218 WQGAVDPV-G----G-----KQLASLLSKIQYGGSVAV 245 (330)
T ss_dssp EEEEEESC-C----T-----HHHHHHHTTEEEEEEEEE
T ss_pred ccEEEECC-c----H-----HHHHHHHHhhcCCCEEEE
Confidence 99998532 1 1 134556689999999874
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=86.92 E-value=2.5 Score=33.66 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=43.0
Q ss_pred CCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015306 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (409)
Q Consensus 123 ~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs 195 (409)
.++|+-+|||. | .++..+.+.|. +|+++|.++ .++.+++ .+ +.++.+|..+.. .....+|+|+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhCCcccCCEEEE
Confidence 35789999864 2 23334444566 899999999 7766553 22 577888887643 22357999987
Q ss_pred e
Q 015306 196 E 196 (409)
Q Consensus 196 ~ 196 (409)
.
T Consensus 77 ~ 77 (141)
T 3llv_A 77 T 77 (141)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=86.90 E-value=2.2 Score=35.86 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCC-C-hHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----C-CCCceeE
Q 015306 122 KDKVVLDVGAGT-G-ILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----L-PVTKVDI 192 (409)
Q Consensus 122 ~~~~VLDlGcG~-G-~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~-~~~~~Dv 192 (409)
.+.+|+-+|+|. | .++..+.+. |. .|+++|.++ .++.+++ .+ +.++.+|..+.. . .-..+|+
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~~~~~ad~ 108 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERILDTGHVKL 108 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhccCCCCCCE
Confidence 356899998864 3 223344445 65 899999999 7665543 23 456677765422 2 2357999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|+.... .......++. ..+.+.|++.++
T Consensus 109 vi~~~~-----~~~~~~~~~~-~~~~~~~~~~ii 136 (183)
T 3c85_A 109 VLLAMP-----HHQGNQTALE-QLQRRNYKGQIA 136 (183)
T ss_dssp EEECCS-----SHHHHHHHHH-HHHHTTCCSEEE
T ss_pred EEEeCC-----ChHHHHHHHH-HHHHHCCCCEEE
Confidence 987321 1122222223 334556666665
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=86.59 E-value=0.59 Score=42.23 Aligned_cols=55 Identities=11% Similarity=-0.063 Sum_probs=38.5
Q ss_pred EEEEEccccccc--CCCCceeEEEEeccccccc-C-----------hhHHHHHHHHHHhcccCCeEEEcc
Q 015306 173 ITVLKGKIEEIE--LPVTKVDIIISEWMGYFLL-F-----------ENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 173 i~~~~~d~~~~~--~~~~~~DvVvs~~~~~~l~-~-----------~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+++++|..+.- +++++||+|+++|+ |... . ...+...+..+.++|+|||.++..
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPP-Y~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPP-YNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCC-CSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCC-CCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457888886542 45579999999984 4332 1 024567778889999999998753
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=86.46 E-value=0.87 Score=41.81 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=49.6
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
.-+...|........+++||-+|+| | ..+..+++.|+.+|+.++-++ .++...+.+......-.+... +..++
T Consensus 112 ~G~~~~l~~~~~~l~~k~vlVlGaG-G~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~--~~~~l 188 (283)
T 3jyo_A 112 SGFGRGMEEGLPNAKLDSVVQVGAG-GVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGV--DARGI 188 (283)
T ss_dssp HHHHHHHHHHCTTCCCSEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEE--CSTTH
T ss_pred HHHHHHHHHhCcCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEc--CHHHH
Confidence 3556666554445678999999997 3 233445567888999999987 555444444332211113322 22222
Q ss_pred cCCCCceeEEEEe
Q 015306 184 ELPVTKVDIIISE 196 (409)
Q Consensus 184 ~~~~~~~DvVvs~ 196 (409)
.-.-..+|+||..
T Consensus 189 ~~~l~~~DiVIna 201 (283)
T 3jyo_A 189 EDVIAAADGVVNA 201 (283)
T ss_dssp HHHHHHSSEEEEC
T ss_pred HHHHhcCCEEEEC
Confidence 1111469999974
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=86.29 E-value=1.8 Score=38.61 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCC---hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C-----
Q 015306 122 KDKVVLDVGAGTG---ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----- 186 (409)
Q Consensus 122 ~~~~VLDlGcG~G---~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----- 186 (409)
.+++||-.|++.| .++..+++ .|+ +|++++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 4678888886554 23444555 566 899999887 6665555555543 358899999877531 0
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+.+|+||.+.
T Consensus 80 ~g~id~li~~A 90 (276)
T 1wma_A 80 YGGLDVLVNNA 90 (276)
T ss_dssp HSSEEEEEECC
T ss_pred cCCCCEEEECC
Confidence 13799999863
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.20 E-value=2.4 Score=37.38 Aligned_cols=73 Identities=27% Similarity=0.283 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------CC
Q 015306 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 187 (409)
Q Consensus 122 ~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 187 (409)
.+++||-.|++.| .++..+++.|+ +|++++.++ .++.+.+.+...+ .++.++.+|+.+... ..
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 5778999997766 34556666776 899999998 7777666666654 358999999977531 13
Q ss_pred CceeEEEEec
Q 015306 188 TKVDIIISEW 197 (409)
Q Consensus 188 ~~~DvVvs~~ 197 (409)
+++|++|.+.
T Consensus 81 ~~id~li~~A 90 (247)
T 3lyl_A 81 LAIDILVNNA 90 (247)
T ss_dssp CCCSEEEECC
T ss_pred CCCCEEEECC
Confidence 5799999864
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=86.15 E-value=0.3 Score=46.92 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
.++++|+-+|+|. |..+..+++ .|+ +|+++|.++ .++.+++.. +.. +.....+..++.-.-..+|+|+...
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~---g~~--~~~~~~~~~~l~~~l~~aDvVi~~~ 239 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEF---CGR--IHTRYSSAYELEGAVKRADLVIGAV 239 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TTS--SEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhc---CCe--eEeccCCHHHHHHHHcCCCEEEECC
Confidence 4678999999864 333333333 577 899999998 776665432 221 2222112212110014689999732
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
......... -+.....+.+||||+++-
T Consensus 240 ~~p~~~t~~---li~~~~l~~mk~g~~iV~ 266 (377)
T 2vhw_A 240 LVPGAKAPK---LVSNSLVAHMKPGAVLVD 266 (377)
T ss_dssp CCTTSCCCC---CBCHHHHTTSCTTCEEEE
T ss_pred CcCCCCCcc---eecHHHHhcCCCCcEEEE
Confidence 100000000 112334477899998873
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=86.01 E-value=1.8 Score=42.08 Aligned_cols=69 Identities=23% Similarity=0.402 Sum_probs=47.6
Q ss_pred CCEEEEEcCCCChHHHHHHHc----C--CCEEEEEecHH-HHHHHHHHHHHc--CCCCcEEEEEcccccccCCCCcee-E
Q 015306 123 DKVVLDVGAGTGILSLFCAKA----G--AAHVYAVECSQ-MANMAKQIVEAN--GFSNVITVLKGKIEEIELPVTKVD-I 192 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~----g--~~~V~~vD~s~-~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~~D-v 192 (409)
...|+|+|+|+|.++.-+.+. + ..+++.||+|+ +.+.-++.+... .+..+|.+.. + +| +.+. +
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~v~W~~----~--lP-~~~~g~ 210 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRWLD----A--LP-ERFEGV 210 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTGGGEEEES----S--CC-SCEEEE
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccCCCceecc----c--CC-ccCceE
Confidence 469999999999988777652 2 34899999999 888877777642 1334577753 1 33 3344 7
Q ss_pred EEEecc
Q 015306 193 IISEWM 198 (409)
Q Consensus 193 Vvs~~~ 198 (409)
|+++-+
T Consensus 211 iiANE~ 216 (432)
T 4f3n_A 211 VVGNEV 216 (432)
T ss_dssp EEEESC
T ss_pred EEeehh
Confidence 777543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=85.95 E-value=1.8 Score=38.92 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC------CCCce
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL------PVTKV 190 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~ 190 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+....+.++.+|+.+... .-+++
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 46789999998776 34555666776 899999988 666655555554433558888999876431 12579
Q ss_pred eEEEEec
Q 015306 191 DIIISEW 197 (409)
Q Consensus 191 DvVvs~~ 197 (409)
|++|.+.
T Consensus 87 d~lv~nA 93 (267)
T 3t4x_A 87 DILINNL 93 (267)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999863
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.88 E-value=2.6 Score=38.47 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCCh---HHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015306 122 KDKVVLDVGAGTGI---LSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (409)
Q Consensus 122 ~~~~VLDlGcG~G~---l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (409)
.+++||-.|++.|+ ++..+++.|+ .+|+.++.++ .++.+.+.+....-..++.++.+|+.+...
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 111 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ 111 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999988762 3444555554 4899999988 776666655543323468999999987541
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
..+++|++|.+.
T Consensus 112 ~~g~iD~lVnnA 123 (287)
T 3rku_A 112 EFKDIDILVNNA 123 (287)
T ss_dssp GGCSCCEEEECC
T ss_pred hcCCCCEEEECC
Confidence 124799999864
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=85.78 E-value=2.3 Score=42.18 Aligned_cols=86 Identities=29% Similarity=0.316 Sum_probs=52.2
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
..+|++|+-+|+|. |.....+++ .|+ +|+++|.++ .+..|++ .|. ++ .++.+. + ..+|+|+..
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e~-l--~~aDvVi~a 336 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMM----EGF----DV--VTVEEA-I--GDADIVVTA 336 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTC----EE--CCHHHH-G--GGCSEEEEC
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----EE--ecHHHH-H--hCCCEEEEC
Confidence 57899999999875 433333444 576 999999998 6665543 343 22 233333 1 578999974
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. + ....+. ....+.+|+||+++-
T Consensus 337 t-g----t~~~i~---~~~l~~mk~ggilvn 359 (494)
T 3ce6_A 337 T-G----NKDIIM---LEHIKAMKDHAILGN 359 (494)
T ss_dssp S-S----SSCSBC---HHHHHHSCTTCEEEE
T ss_pred C-C----CHHHHH---HHHHHhcCCCcEEEE
Confidence 2 1 111111 133466899999873
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=85.48 E-value=0.58 Score=44.71 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCC-ChHHHHHH-HcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGT-GILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
.++++|+-+|+|. |..+..++ ..|+ +|+++|.++ .++.+.+.. +. .+.....+..++.-.-..+|+|+...
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~~~~DvVi~~~ 237 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSVQHADLLIGAV 237 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHHhCCCEEEECC
Confidence 4568999999853 32222223 3577 999999998 766654432 22 23332222222211014689998743
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
... ......-+.+...+.+++||.++-
T Consensus 238 g~~---~~~~~~li~~~~l~~mk~gg~iV~ 264 (369)
T 2eez_A 238 LVP---GAKAPKLVTRDMLSLMKEGAVIVD 264 (369)
T ss_dssp C----------CCSCHHHHTTSCTTCEEEE
T ss_pred CCC---ccccchhHHHHHHHhhcCCCEEEE
Confidence 110 000001113445577899998874
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=85.46 E-value=5.3 Score=36.43 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=48.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (409)
-+.+.|........+++||-+|+|. | ..+..+++.|+.+|+.++-++ ..+...+.+...+ .+... +..++.
T Consensus 112 G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~---~~~~~--~~~~l~- 185 (281)
T 3o8q_A 112 GLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG---EVKAQ--AFEQLK- 185 (281)
T ss_dssp HHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS---CEEEE--EGGGCC-
T ss_pred HHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC---CeeEe--eHHHhc-
Confidence 4555665433345789999999872 1 223344456877999999987 5544444443322 24444 333332
Q ss_pred CCCceeEEEEe
Q 015306 186 PVTKVDIIISE 196 (409)
Q Consensus 186 ~~~~~DvVvs~ 196 (409)
..+|+||..
T Consensus 186 --~~aDiIIna 194 (281)
T 3o8q_A 186 --QSYDVIINS 194 (281)
T ss_dssp --SCEEEEEEC
T ss_pred --CCCCEEEEc
Confidence 679999974
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=84.92 E-value=2 Score=40.65 Aligned_cols=85 Identities=21% Similarity=0.228 Sum_probs=50.8
Q ss_pred CCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecH----HHHHHHHHHHHHcCCCCcEEEEEccccccc--C--CCCceeE
Q 015306 123 DKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS----QMANMAKQIVEANGFSNVITVLKGKIEEIE--L--PVTKVDI 192 (409)
Q Consensus 123 ~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s----~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~~~Dv 192 (409)
+.+||-+|+|. |.++..+++ .|+ +|++++.+ +.++.+++ .|. +.+..+ ++. . ..+.+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~----~ga----~~v~~~--~~~~~~~~~~~~~d~ 249 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEE----TKT----NYYNSS--NGYDKLKDSVGKFDV 249 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHH----HTC----EEEECT--TCSHHHHHHHCCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHH----hCC----ceechH--HHHHHHHHhCCCCCE
Confidence 99999999843 556666666 677 99999986 32344433 232 222111 111 0 0146999
Q ss_pred EEEecccccccChhHHHHHH-HHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (409)
|+... + .. ..+ +...+.|+++|.++.
T Consensus 250 vid~~-g----~~----~~~~~~~~~~l~~~G~iv~ 276 (366)
T 2cdc_A 250 IIDAT-G----AD----VNILGNVIPLLGRNGVLGL 276 (366)
T ss_dssp EEECC-C----CC----THHHHHHGGGEEEEEEEEE
T ss_pred EEECC-C----Ch----HHHHHHHHHHHhcCCEEEE
Confidence 98642 1 11 123 566789999999874
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.89 E-value=3.4 Score=37.16 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEe-cHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVE-CSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD-~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (409)
..+++||-.|++.| .++..+++.|+ +|+.++ .++ ..+...+.+...+ .++.++.+|+.+...
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999998887 35566677787 677664 344 5555555555544 458899999987531
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
..+++|++|.+.
T Consensus 102 ~~g~iD~lvnnA 113 (267)
T 3u5t_A 102 AFGGVDVLVNNA 113 (267)
T ss_dssp HHSCEEEEEECC
T ss_pred HcCCCCEEEECC
Confidence 025799999864
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.81 E-value=0.39 Score=45.40 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=55.3
Q ss_pred HHhccCCCCCCEEEEEcCC--CChHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc-----C
Q 015306 114 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-----L 185 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG--~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~ 185 (409)
+.......+|.+||-.|++ .|.++..+++ .|..+|++++.++-.+.++ .|.. .++. +-.++. .
T Consensus 134 l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~~~~~~~~~-----~ga~---~~~~-~~~~~~~~~~~~ 204 (349)
T 4a27_A 134 LFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIK-----DSVT---HLFD-RNADYVQEVKRI 204 (349)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEECGGGHHHHG-----GGSS---EEEE-TTSCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHH-----cCCc---EEEc-CCccHHHHHHHh
Confidence 3344567889999999983 3677777887 4667999998443444443 2332 2222 111111 1
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+.+|+|+-.. + . . . +....++|+++|+++.
T Consensus 205 ~~~g~Dvv~d~~-g----~-~---~-~~~~~~~l~~~G~~v~ 236 (349)
T 4a27_A 205 SAEGVDIVLDCL-C----G-D---N-TGKGLSLLKPLGTYIL 236 (349)
T ss_dssp CTTCEEEEEEEC-C----------------CTTEEEEEEEEE
T ss_pred cCCCceEEEECC-C----c-h---h-HHHHHHHhhcCCEEEE
Confidence 236799998532 1 1 1 1 2455689999999874
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=84.67 E-value=6.6 Score=35.63 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=41.7
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEe-cHH-HHHHHHHHHH-HcCCCCcEEEEEccccccc
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVE-CSQ-MANMAKQIVE-ANGFSNVITVLKGKIEEIE 184 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD-~s~-~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~ 184 (409)
..+++||-.|++.| .++..+++.|+ +|+.++ .++ .++.+.+.+. ..+ .++.++.+|+.+..
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~ 73 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVA 73 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcC--CeeEEEEeecCCcc
Confidence 35778998887766 34455556676 899999 887 6665555554 333 45889999987754
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=84.48 E-value=3.6 Score=37.43 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=60.1
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc---------CCC--------CcEEEEEcccccc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---------GFS--------NVITVLKGKIEEI 183 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~---------~~~--------~~i~~~~~d~~~~ 183 (409)
++|.-||+|. +.++..+++.|. +|+.+|.++ .++.+.+.+... ++. .++++ ..+..+.
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~ 82 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQA 82 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHH
Confidence 4788899886 245566666776 899999999 887776653211 110 11232 2333322
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
-...|+|+... .........++..+...++|+.+++-.
T Consensus 83 ---~~~aDlVi~av----~~~~~~~~~v~~~l~~~~~~~~il~s~ 120 (283)
T 4e12_A 83 ---VKDADLVIEAV----PESLDLKRDIYTKLGELAPAKTIFATN 120 (283)
T ss_dssp ---TTTCSEEEECC----CSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred ---hccCCEEEEec----cCcHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 15689999643 222235567788888889998877643
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=84.46 E-value=2.9 Score=33.91 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=51.4
Q ss_pred CCEEEEEcCCCChHHHHHH----HcCCCEEEEEecH-H-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeE
Q 015306 123 DKVVLDVGAGTGILSLFCA----KAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDI 192 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la----~~g~~~V~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~Dv 192 (409)
..+|+-+|+| ..+..++ +.|. .|+.+|.+ + .++...+... ..+.++.+|..+.. ..-..+|+
T Consensus 3 ~~~vlI~G~G--~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~ 74 (153)
T 1id1_A 3 KDHFIVCGHS--ILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRA 74 (153)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred CCcEEEECCC--HHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCE
Confidence 3468888864 4554444 3454 89999996 4 4444433221 23788999986543 12367999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|++.. ........+....+.+.|...++
T Consensus 75 vi~~~------~~d~~n~~~~~~a~~~~~~~~ii 102 (153)
T 1id1_A 75 ILALS------DNDADNAFVVLSAKDMSSDVKTV 102 (153)
T ss_dssp EEECS------SCHHHHHHHHHHHHHHTSSSCEE
T ss_pred EEEec------CChHHHHHHHHHHHHHCCCCEEE
Confidence 99732 11223333444445566665555
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=84.27 E-value=4.4 Score=37.11 Aligned_cols=95 Identities=20% Similarity=0.294 Sum_probs=58.8
Q ss_pred CEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH-------HcCC-C-------------CcEEEEEcc
Q 015306 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE-------ANGF-S-------------NVITVLKGK 179 (409)
Q Consensus 124 ~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~-~-------------~~i~~~~~d 179 (409)
++|.-||+|. | .++..+++.|. +|+.+|.++ .++.+++.+. ..|. . .++++. .|
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~-~~ 93 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TD 93 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe-cC
Confidence 5799999987 3 46667777776 899999998 8776654332 1221 1 124432 23
Q ss_pred cccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 180 ~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+. -..+|+|+.... ........++..+...++|+.+++-
T Consensus 94 ~~~~---~~~aD~Vi~avp----~~~~~~~~v~~~l~~~~~~~~iv~s 134 (302)
T 1f0y_A 94 AASV---VHSTDLVVEAIV----ENLKVKNELFKRLDKFAAEHTIFAS 134 (302)
T ss_dssp HHHH---TTSCSEEEECCC----SCHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred HHHh---hcCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEEE
Confidence 3321 156899986431 1222345677778888888877653
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=84.25 E-value=1.6 Score=39.60 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---------CC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------PV 187 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~~ 187 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... ..
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 46789999998776 34556666777 899999988 6666655555544 458999999987531 01
Q ss_pred CceeEEEEec
Q 015306 188 TKVDIIISEW 197 (409)
Q Consensus 188 ~~~DvVvs~~ 197 (409)
+++|++|.+.
T Consensus 108 g~iD~lvnnA 117 (275)
T 4imr_A 108 APVDILVINA 117 (275)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 5799999864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=84.04 E-value=2.3 Score=41.17 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=55.6
Q ss_pred CCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015306 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (409)
Q Consensus 123 ~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs 195 (409)
..+|+-+|+|. | .++..|.+.|. .|++||.++ .++.+++ .| +.++.+|..+.. ..-..+|+||+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVLIN 74 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence 35688888864 2 22333333555 899999999 8887763 23 568889998754 23467999987
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.. ........+-...+.+.|+..++
T Consensus 75 ~~------~~~~~n~~i~~~ar~~~p~~~Ii 99 (413)
T 3l9w_A 75 AI------DDPQTNLQLTEMVKEHFPHLQII 99 (413)
T ss_dssp CC------SSHHHHHHHHHHHHHHCTTCEEE
T ss_pred CC------CChHHHHHHHHHHHHhCCCCeEE
Confidence 32 11222333344456677876665
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.03 E-value=3.7 Score=36.91 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=53.0
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C-----
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----- 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----- 186 (409)
..+++||-.|++.| .++..+++.|+ +|++++.++ .++.+.+.+...+...++.++.+|+.+... .
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 35789999987665 33445555676 899999988 766666666666655668899999877531 0
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+.+|+||.+.
T Consensus 109 ~g~iD~vi~~A 119 (279)
T 1xg5_A 109 HSGVDICINNA 119 (279)
T ss_dssp HCCCSEEEECC
T ss_pred CCCCCEEEECC
Confidence 13699999863
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.94 E-value=4.9 Score=35.90 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA 85 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56889999999887 35666777777 899999998 7776666666554 458999999987531 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+++|++|.+.
T Consensus 86 ~g~id~lv~nA 96 (264)
T 3ucx_A 86 YGRVDVVINNA 96 (264)
T ss_dssp TSCCSEEEECC
T ss_pred cCCCcEEEECC
Confidence 25799999864
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=83.78 E-value=4.2 Score=36.61 Aligned_cols=70 Identities=9% Similarity=0.104 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---------CCC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---------LPV 187 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~~~ 187 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+ ..++.++.+|+.+.. ...
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADEL-----GNRAEFVSTNVTSEDSVLAAIEAANQL 101 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 46789999998876 34556666777 899999988 665554443 245899999997753 112
Q ss_pred CceeEEEEe
Q 015306 188 TKVDIIISE 196 (409)
Q Consensus 188 ~~~DvVvs~ 196 (409)
+..|++|.+
T Consensus 102 ~~id~lv~~ 110 (281)
T 3ppi_A 102 GRLRYAVVA 110 (281)
T ss_dssp SEEEEEEEC
T ss_pred CCCCeEEEc
Confidence 578999976
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.68 E-value=3.1 Score=37.47 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC-----
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~----- 186 (409)
..+++||-.|++.| .++..+++.|+ +|++++.++ .++.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 95 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV 95 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999998765 34555566676 899999988 6665555555443 35889999987643 10
Q ss_pred C-CceeEEEEec
Q 015306 187 V-TKVDIIISEW 197 (409)
Q Consensus 187 ~-~~~DvVvs~~ 197 (409)
- +.+|++|.+.
T Consensus 96 ~~g~id~lv~nA 107 (273)
T 1ae1_A 96 FDGKLNILVNNA 107 (273)
T ss_dssp TTSCCCEEEECC
T ss_pred cCCCCcEEEECC
Confidence 1 6799999864
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=83.57 E-value=9.5 Score=29.70 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=38.9
Q ss_pred CCEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015306 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (409)
Q Consensus 123 ~~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs 195 (409)
+.+|+-+|+|. | .++..+++.|. +|+.+|.++ .++.+++. .+ +.++.+|..+.. .....+|+|+.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~---~~----~~~~~~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHh---cC----cEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence 45789988754 2 22333344554 899999988 66544331 12 456677764432 11257999987
Q ss_pred e
Q 015306 196 E 196 (409)
Q Consensus 196 ~ 196 (409)
.
T Consensus 76 ~ 76 (140)
T 1lss_A 76 V 76 (140)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=83.29 E-value=4.1 Score=35.95 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999998776 34556666777 899999998 7776666665544 458899999987531 0
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+.+|++|.+.
T Consensus 84 ~g~id~li~~A 94 (253)
T 3qiv_A 84 FGGIDYLVNNA 94 (253)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 14799999864
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=83.11 E-value=4.8 Score=39.49 Aligned_cols=97 Identities=10% Similarity=0.164 Sum_probs=60.8
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-H-HHHHHHHHH---HcC-CC--------CcEEEEEcccccccCCC
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-M-ANMAKQIVE---ANG-FS--------NVITVLKGKIEEIELPV 187 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~-~~~a~~~~~---~~~-~~--------~~i~~~~~d~~~~~~~~ 187 (409)
++|.-||+|. +.++..+++.|. .|+.+|.++ . ....++++. ..| +. .++++. .|... -
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl~a----l 128 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDFHK----L 128 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCGGG----C
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCHHH----H
Confidence 5899999997 466777888877 999999988 3 332222221 222 11 234443 34332 2
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
..+|+||... .........++..+...++|+.+++-.+.
T Consensus 129 ~~aDlVIeAV----pe~~~vk~~v~~~l~~~~~~~aIlasnTS 167 (460)
T 3k6j_A 129 SNCDLIVESV----IEDMKLKKELFANLENICKSTCIFGTNTS 167 (460)
T ss_dssp TTCSEEEECC----CSCHHHHHHHHHHHHTTSCTTCEEEECCS
T ss_pred ccCCEEEEcC----CCCHHHHHHHHHHHHhhCCCCCEEEecCC
Confidence 5799999643 22223456778888899999988864433
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=82.98 E-value=4.6 Score=36.06 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCCCh---HHHHHHHcCCCEEEEEec---HH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--------
Q 015306 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVEC---SQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-------- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~---l~~~la~~g~~~V~~vD~---s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------- 185 (409)
..+++||-.|++.|+ ++..+++.|+ +|+.++. +. .++.+.+.+...+ .++.++.+|+.+...
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~ 85 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFA 85 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHH
Confidence 467899999988762 3444445566 7888764 33 4444444444433 468999999987531
Q ss_pred --CCCceeEEEEec
Q 015306 186 --PVTKVDIIISEW 197 (409)
Q Consensus 186 --~~~~~DvVvs~~ 197 (409)
..++.|++|.+.
T Consensus 86 ~~~~g~iD~lvnnA 99 (262)
T 3ksu_A 86 EKEFGKVDIAINTV 99 (262)
T ss_dssp HHHHCSEEEEEECC
T ss_pred HHHcCCCCEEEECC
Confidence 025799999864
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=82.94 E-value=1.4 Score=43.08 Aligned_cols=96 Identities=21% Similarity=0.145 Sum_probs=59.1
Q ss_pred cCCCCCCEEEEEcC-C-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc-------------
Q 015306 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI------------- 180 (409)
Q Consensus 118 ~~~~~~~~VLDlGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~------------- 180 (409)
....+|.+||-.|+ | .|.++..+++ .|+ +|++++.++ -++.+++ .|....+.....+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccch
Confidence 56788999999997 3 3677778887 566 899999888 7777654 34432121111111
Q ss_pred ------cccc-CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 181 ------EEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 181 ------~~~~-~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+. .....+|+|+-.. + . ..+....++|+++|.++.-
T Consensus 291 ~~~~~~~~v~~~~g~g~Dvvid~~-G-------~--~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 291 TGRKLAKLVVEKAGREPDIVFEHT-G-------R--VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECS-C-------H--HHHHHHHHHSCTTCEEEES
T ss_pred hhhHHHHHHHHHhCCCceEEEECC-C-------c--hHHHHHHHHHhcCCEEEEE
Confidence 0000 0125799998632 1 1 2345566889999998743
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=82.76 E-value=1.8 Score=41.18 Aligned_cols=89 Identities=15% Similarity=0.058 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCC--CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCcee
Q 015306 121 FKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG--~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D 191 (409)
.+|.+||-+|++ .|.++..+|+ .|+ +|+++. ++ -++.+++ .|.. .++...-.++. ...+.+|
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKS----RGAE---EVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS---EEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHH----cCCc---EEEECCCchHHHHHHHHccCCcc
Confidence 788999999984 5888888888 677 888885 67 7666654 4542 22322211111 1124599
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcc-cCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lip 227 (409)
+|+-.. .. ...+....+.| +++|+++.
T Consensus 234 ~v~d~~-----g~----~~~~~~~~~~l~~~~G~iv~ 261 (371)
T 3gqv_A 234 YALDCI-----TN----VESTTFCFAAIGRAGGHYVS 261 (371)
T ss_dssp EEEESS-----CS----HHHHHHHHHHSCTTCEEEEE
T ss_pred EEEECC-----Cc----hHHHHHHHHHhhcCCCEEEE
Confidence 998521 11 12344455677 69999874
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.24 E-value=5 Score=36.25 Aligned_cols=75 Identities=11% Similarity=0.139 Sum_probs=52.4
Q ss_pred CCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEec-HH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C---
Q 015306 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVEC-SQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P--- 186 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~-s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~--- 186 (409)
...+++||-.|++.| .++..+++.|+ +|+.++. ++ .++...+.+...+ .++.++.+|+.+... .
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 356789999998876 35566666777 8999885 55 5555555555544 458999999987541 0
Q ss_pred --CCceeEEEEec
Q 015306 187 --VTKVDIIISEW 197 (409)
Q Consensus 187 --~~~~DvVvs~~ 197 (409)
.+++|++|.+.
T Consensus 103 ~~~g~iD~lvnnA 115 (280)
T 4da9_A 103 AEFGRIDCLVNNA 115 (280)
T ss_dssp HHHSCCCEEEEEC
T ss_pred HHcCCCCEEEECC
Confidence 14799999874
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.74 E-value=4.9 Score=36.76 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C-----
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----- 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----- 186 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 57889999999876 34556666776 899999998 7777766666554 358999999987531 0
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+.+|++|.+.
T Consensus 106 ~g~id~lvnnA 116 (301)
T 3tjr_A 106 LGGVDVVFSNA 116 (301)
T ss_dssp HSSCSEEEECC
T ss_pred CCCCCEEEECC
Confidence 14799999864
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=81.65 E-value=2.1 Score=38.61 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQ 100 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56889999997776 34556666777 899999988 7766666665554 358899999977531 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.+++|++|.+.
T Consensus 101 ~g~iD~lv~nA 111 (271)
T 4ibo_A 101 GIDVDILVNNA 111 (271)
T ss_dssp TCCCCEEEECC
T ss_pred CCCCCEEEECC
Confidence 25799999864
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=81.58 E-value=4.3 Score=36.11 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=54.3
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C-----
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----- 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----- 186 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56789999998876 34556666777 899999998 7776666666554 458999999987531 0
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.++.|++|.+.
T Consensus 87 ~g~id~lv~nA 97 (256)
T 3gaf_A 87 FGKITVLVNNA 97 (256)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 14799999864
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=81.34 E-value=6.8 Score=35.23 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=52.6
Q ss_pred EEEEEcCCC--ChHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC-ceeEEEEeccc
Q 015306 125 VVLDVGAGT--GILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT-KVDIIISEWMG 199 (409)
Q Consensus 125 ~VLDlGcG~--G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~DvVvs~~~~ 199 (409)
+|.-||+|. +.++..+++.|. .+|+++|.++ .++.++ ..|... . ...+..+.. . .+|+|+...
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~-~~~~~~~~~---~~~aDvVilav-- 70 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--E-GTTSIAKVE---DFSPDFVMLSS-- 70 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--E-EESCGGGGG---GTCCSEEEECS--
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HCCCcc--c-ccCCHHHHh---cCCCCEEEEcC--
Confidence 688899886 244555555664 3799999998 766554 234321 1 122332221 4 789998642
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.......++..+...++++.+++.
T Consensus 71 ----p~~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 71 ----PVRTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp ----CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred ----CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 123445667777778888886663
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=81.25 E-value=8.6 Score=34.75 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=53.5
Q ss_pred CEEEEEcC-CC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 124 KVVLDVGA-GT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 124 ~~VLDlGc-G~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.+|.-||+ |. | .++..+++.|. +|+++|.++ .++.+.+ .|+ .+ .+..+. -..+|+|+...
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~----~g~----~~--~~~~~~---~~~aDvVi~av-- 75 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQG----MGI----PL--TDGDGW---IDEADVVVLAL-- 75 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHH----TTC----CC--CCSSGG---GGTCSEEEECS--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHh----cCC----Cc--CCHHHH---hcCCCEEEEcC--
Confidence 47999999 75 2 45556666775 899999998 6665543 232 11 122221 15689999742
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.......++..+...+++|..++
T Consensus 76 ----~~~~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 76 ----PDNIIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp ----CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred ----CchHHHHHHHHHHHhCCCCCEEE
Confidence 22346677788878888887766
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=81.22 E-value=4.5 Score=36.02 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=54.0
Q ss_pred CCCCEEEEEcC-CCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C----
Q 015306 121 FKDKVVLDVGA-GTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P---- 186 (409)
Q Consensus 121 ~~~~~VLDlGc-G~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 186 (409)
..+++||-.|+ |.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ ..++.++.+|+.+... .
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 46789999998 666 35666777776 899999988 7766666665443 2469999999987531 0
Q ss_pred -CCceeEEEEec
Q 015306 187 -VTKVDIIISEW 197 (409)
Q Consensus 187 -~~~~DvVvs~~ 197 (409)
.+++|++|.+.
T Consensus 98 ~~g~id~li~~A 109 (266)
T 3o38_A 98 KAGRLDVLVNNA 109 (266)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCcEEEECC
Confidence 14789999864
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=81.12 E-value=0.49 Score=45.34 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 015306 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (409)
Q Consensus 122 ~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (409)
++.+|+-+|+|. |..+..+++ .|+ +|+++|.++ .++.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 678999999985 444444444 677 899999999 7777654
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=81.07 E-value=8.3 Score=40.29 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=67.3
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-----------C---CCCcEEEEEcccccccCC
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-----------G---FSNVITVLKGKIEEIELP 186 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-----------~---~~~~i~~~~~d~~~~~~~ 186 (409)
++|--||+|+ +.++..++..|. .|+.+|.++ .++.+++.+... . ...++++ ..+..++
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l--- 391 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL--- 391 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE-ESCGGGG---
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc-cCcHHHH---
Confidence 5999999998 356667777777 999999999 888887765432 0 1122222 2233332
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCce
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
..+|+||=. .......-..++.++..+++|+.++.-++-++
T Consensus 392 -~~aDlVIEA----V~E~l~iK~~vf~~le~~~~~~aIlASNTSsl 432 (742)
T 3zwc_A 392 -STVDLVVEA----VFEDMNLKKKVFAELSALCKPGAFLCTNTSAL 432 (742)
T ss_dssp -GSCSEEEEC----CCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred -hhCCEEEEe----ccccHHHHHHHHHHHhhcCCCCceEEecCCcC
Confidence 568998842 24555666788999999999999887655443
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=81.04 E-value=4.4 Score=37.49 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC---CcEEE-----EEcccccccCCCCce
Q 015306 122 KDKVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS---NVITV-----LKGKIEEIELPVTKV 190 (409)
Q Consensus 122 ~~~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~---~~i~~-----~~~d~~~~~~~~~~~ 190 (409)
...+|.-||+|. +.++..+++.|. .|+.+ .++ .++..++. ++. ....+ ...+... ...+
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~~~~~~~~~~~----~~~~ 87 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEAT----GLRLETQSFDEQVKVSASSDPSA----VQGA 87 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHH----CEEEECSSCEEEECCEEESCGGG----GTTC
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEEeeeeeCCHHH----cCCC
Confidence 456899999996 356667777776 89999 777 66655442 221 00010 0112211 1578
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+.... ...+..+++.+...++++..++.
T Consensus 88 D~vilavk------~~~~~~~l~~l~~~l~~~~~iv~ 118 (318)
T 3hwr_A 88 DLVLFCVK------STDTQSAALAMKPALAKSALVLS 118 (318)
T ss_dssp SEEEECCC------GGGHHHHHHHHTTTSCTTCEEEE
T ss_pred CEEEEEcc------cccHHHHHHHHHHhcCCCCEEEE
Confidence 99986421 23567788888888998877663
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=81.02 E-value=5.5 Score=35.58 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+....-..++.++.+|+.+... .
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46789999998876 34556666777 899999988 766665555542212348899999987531 0
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.++.|++|.+.
T Consensus 85 ~g~id~lvnnA 95 (265)
T 3lf2_A 85 LGCASILVNNA 95 (265)
T ss_dssp HCSCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 25789999864
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=80.91 E-value=7.6 Score=34.83 Aligned_cols=84 Identities=17% Similarity=0.070 Sum_probs=53.0
Q ss_pred EEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 125 ~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
+|.-||||. +.++..+++.|. +|+++|.++ .++.+. ..+... . ...+..+. ..+|+|+....
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~----~~g~~~--~-~~~~~~~~----~~~D~vi~av~--- 66 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAV----ERQLVD--E-AGQDLSLL----QTAKIIFLCTP--- 66 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH----HTTSCS--E-EESCGGGG----TTCSEEEECSC---
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH----hCCCCc--c-ccCCHHHh----CCCCEEEEECC---
Confidence 578899876 244555556666 899999998 666543 234322 1 12333332 46899997431
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEE
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
......++..+...++++..++
T Consensus 67 ---~~~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 67 ---IQLILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp ---HHHHHHHHHHHGGGSCTTCEEE
T ss_pred ---HHHHHHHHHHHHhhCCCCCEEE
Confidence 2355677777878888887665
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=80.81 E-value=5.5 Score=35.57 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCcee
Q 015306 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVD 191 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D 191 (409)
...|+++|--|.+.| ..+..+++.|+ +|+.+|.+.. +.+.+.+...+ .++.++.+|+.+.. +..++.|
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~-~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iD 81 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP-DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFD 81 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC-HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH-HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCC
Confidence 357899999998887 45677777887 8999988741 12223344444 35889999997753 2347899
Q ss_pred EEEEec
Q 015306 192 IIISEW 197 (409)
Q Consensus 192 vVvs~~ 197 (409)
++|.+.
T Consensus 82 iLVNNA 87 (247)
T 4hp8_A 82 ILVNNA 87 (247)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999863
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=80.79 E-value=5.5 Score=35.91 Aligned_cols=74 Identities=24% Similarity=0.363 Sum_probs=47.9
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC----
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP---- 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 186 (409)
..+++||-.|++.| .++..+++.|+ +|++++.+. ..+.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 35778998888765 34445555676 899988764 3444444444433 35889999987643 00
Q ss_pred -CCceeEEEEec
Q 015306 187 -VTKVDIIISEW 197 (409)
Q Consensus 187 -~~~~DvVvs~~ 197 (409)
.+.+|++|.+.
T Consensus 104 ~~g~iD~lv~~A 115 (283)
T 1g0o_A 104 IFGKLDIVCSNS 115 (283)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 14789999864
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=80.70 E-value=3 Score=33.98 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=40.6
Q ss_pred CCCCCEEEEEcCCC-Ch-HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeE
Q 015306 120 LFKDKVVLDVGAGT-GI-LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDI 192 (409)
Q Consensus 120 ~~~~~~VLDlGcG~-G~-l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~Dv 192 (409)
..++.+|+-+|+|. |. ++..+.+.|. +|+++|.++ .++.++. ..+ +.++.+|..+.. .....+|+
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~~g----~~~~~~d~~~~~~l~~~~~~~ad~ 87 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---EFS----GFTVVGDAAEFETLKECGMEKADM 87 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---TCC----SEEEESCTTSHHHHHTTTGGGCSE
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---cCC----CcEEEecCCCHHHHHHcCcccCCE
Confidence 35678999999865 32 2333444565 899999988 5543321 112 445666654321 11257999
Q ss_pred EEEe
Q 015306 193 IISE 196 (409)
Q Consensus 193 Vvs~ 196 (409)
|+..
T Consensus 88 Vi~~ 91 (155)
T 2g1u_A 88 VFAF 91 (155)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9874
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=80.69 E-value=11 Score=34.25 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=54.0
Q ss_pred CEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE--------cccccc-cCCC--Cc
Q 015306 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK--------GKIEEI-ELPV--TK 189 (409)
Q Consensus 124 ~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~--------~d~~~~-~~~~--~~ 189 (409)
.+|.-||+|. | .++..+++.|. +|+.+|.++ .++.+++. + +.+.. .++.+. .... ..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKN----G----LIADFNGEEVVANLPIFSPEEIDHQNEQ 74 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH----C----EEEEETTEEEEECCCEECGGGCCTTSCC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhC----C----EEEEeCCCeeEecceeecchhhcccCCC
Confidence 3789999985 2 44555666666 899999988 66655432 3 22211 111111 1111 27
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+|+... .......++..+...++++..++.
T Consensus 75 ~d~vi~~v------~~~~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 75 VDLIIALT------KAQQLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp CSEEEECS------CHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred CCEEEEEe------ccccHHHHHHHHHHhcCCCCEEEE
Confidence 89998742 223567778888888888877764
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=80.47 E-value=4.9 Score=35.62 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=53.5
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC----------
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL---------- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~---------- 185 (409)
..++++|-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+....-. .++.++.+|+.+...
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 46789999998876 35566666777 899999988 766665555443211 458899999987531
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
..+++|++|.+.
T Consensus 84 ~~g~iD~lvnnA 95 (250)
T 3nyw_A 84 KYGAVDILVNAA 95 (250)
T ss_dssp HHCCEEEEEECC
T ss_pred hcCCCCEEEECC
Confidence 025799999864
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.46 E-value=0.51 Score=45.59 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 015306 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (409)
Q Consensus 122 ~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (409)
++.+|+-+|+|. |..+..+++ .|+ +|+++|.++ .++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence 578999999985 555545555 677 899999999 7777655
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=80.36 E-value=9.4 Score=37.24 Aligned_cols=86 Identities=23% Similarity=0.227 Sum_probs=50.7
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
....|++|+-+|+|. |......++ .|+ +|+++|.++ ....+. ..| +++ .++.++- ...|+|+.
T Consensus 243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~----~~G----~~v--v~LeElL---~~ADIVv~ 308 (464)
T 3n58_A 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAA----MDG----FEV--VTLDDAA---STADIVVT 308 (464)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHH----HTT----CEE--CCHHHHG---GGCSEEEE
T ss_pred CcccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHH----hcC----cee--ccHHHHH---hhCCEEEE
Confidence 357899999999886 433333333 566 999999988 443332 223 232 2444432 57899986
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
..-...+.. .+....+|+|++++
T Consensus 309 atgt~~lI~--------~e~l~~MK~GAILI 331 (464)
T 3n58_A 309 TTGNKDVIT--------IDHMRKMKDMCIVG 331 (464)
T ss_dssp CCSSSSSBC--------HHHHHHSCTTEEEE
T ss_pred CCCCccccC--------HHHHhcCCCCeEEE
Confidence 321111111 23336789999887
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=80.23 E-value=5.1 Score=35.71 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C----
Q 015306 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P---- 186 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 186 (409)
...+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~ 102 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLA 102 (262)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHH
Confidence 356789999998765 33455556676 899999998 7776666666554 458999999977531 0
Q ss_pred -CCceeEEEEec
Q 015306 187 -VTKVDIIISEW 197 (409)
Q Consensus 187 -~~~~DvVvs~~ 197 (409)
.+++|++|.+.
T Consensus 103 ~~g~id~lv~~A 114 (262)
T 3rkr_A 103 AHGRCDVLVNNA 114 (262)
T ss_dssp HHSCCSEEEECC
T ss_pred hcCCCCEEEECC
Confidence 24799999864
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=80.13 E-value=4.2 Score=36.07 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccc--cccc-----C----
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI--EEIE-----L---- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~-----~---- 185 (409)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+- .++.++..|+ .+.. +
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIA 87 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHH
Confidence 56789999998876 34556666777 899999988 66655555544332 2478888888 4432 0
Q ss_pred -CCCceeEEEEec
Q 015306 186 -PVTKVDIIISEW 197 (409)
Q Consensus 186 -~~~~~DvVvs~~ 197 (409)
..++.|++|.+.
T Consensus 88 ~~~g~id~lv~nA 100 (252)
T 3f1l_A 88 VNYPRLDGVLHNA 100 (252)
T ss_dssp HHCSCCSEEEECC
T ss_pred HhCCCCCEEEECC
Confidence 125799999864
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=80.12 E-value=4.8 Score=37.38 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=48.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecH---H-HHH-HHHHHHHHcCCCCcEEEEEc
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS---Q-MAN-MAKQIVEANGFSNVITVLKG 178 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s---~-~~~-~a~~~~~~~~~~~~i~~~~~ 178 (409)
..-+.+.|........+++||-+|+| | ..+..+++.|+++|+.++-+ . .++ .+.+.....+. .+.++..
T Consensus 138 ~~Gf~~~L~~~~~~l~gk~~lVlGaG-G~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~--~~~~~~~ 214 (315)
T 3tnl_A 138 GTGYMRALKEAGHDIIGKKMTICGAG-GAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDC--KAQLFDI 214 (315)
T ss_dssp HHHHHHHHHHTTCCCTTSEEEEECCS-HHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSC--EEEEEET
T ss_pred HHHHHHHHHHcCCCccCCEEEEECCC-hHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCC--ceEEecc
Confidence 33566666654444678999999987 4 23445556788899999887 5 333 33333222221 2443322
Q ss_pred c-cccccCCCCceeEEEEe
Q 015306 179 K-IEEIELPVTKVDIIISE 196 (409)
Q Consensus 179 d-~~~~~~~~~~~DvVvs~ 196 (409)
+ ..++.-.-..+|+||..
T Consensus 215 ~~~~~l~~~l~~aDiIINa 233 (315)
T 3tnl_A 215 EDHEQLRKEIAESVIFTNA 233 (315)
T ss_dssp TCHHHHHHHHHTCSEEEEC
T ss_pred chHHHHHhhhcCCCEEEEC
Confidence 1 11121111469999975
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=80.05 E-value=3.9 Score=37.14 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-CCCce
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-PVTKV 190 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~~ 190 (409)
..+++||-.|++.| .++..+++.|+ +|++++.++ .++.+.+. +..++.++.+|+.+.. . .-+.+
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~v~~~~~~~~~i 87 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAART-----MAGQVEVRELDLQDLSSVRRFADGVSGA 87 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTT-----SSSEEEEEECCTTCHHHHHHHHHTCCCE
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH-----hcCCeeEEEcCCCCHHHHHHHHHhcCCC
Confidence 56789999998876 34555666676 899999988 65544332 2356999999998753 1 11578
Q ss_pred eEEEEec
Q 015306 191 DIIISEW 197 (409)
Q Consensus 191 DvVvs~~ 197 (409)
|++|.+.
T Consensus 88 D~lv~nA 94 (291)
T 3rd5_A 88 DVLINNA 94 (291)
T ss_dssp EEEEECC
T ss_pred CEEEECC
Confidence 9999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 409 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-118 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 1e-106 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 1e-100 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-09 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 4e-09 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 1e-08 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 8e-08 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 9e-07 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-05 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 2e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 4e-05 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 1e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 2e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 2e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-04 | |
| d2dula1 | 375 | c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR | 5e-04 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 6e-04 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 7e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.001 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.001 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.003 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.004 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 344 bits (882), Expect = e-118
Identities = 188/320 (58%), Positives = 242/320 (75%), Gaps = 4/320 (1%)
Query: 90 SYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVY 149
SY+HFGIHEEMLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V
Sbjct: 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVI 60
Query: 150 AVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLN 209
+ECS +++ A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLN
Sbjct: 61 GIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLN 120
Query: 210 TVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEP 269
TVL+ARDKWL DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EP
Sbjct: 121 TVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEP 180
Query: 270 LVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKC 329
LVD VD Q+VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+C
Sbjct: 181 LVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRC 240
Query: 330 HKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIML 389
HK GFS T P+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D +
Sbjct: 241 HKRTGFS----TSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTI 296
Query: 390 KYSLQGRHSAISRIQYYKMR 409
+G+ +S Y+MR
Sbjct: 297 DLDFKGQLCELSCSTDYRMR 316
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 315 bits (808), Expect = e-106
Identities = 166/331 (50%), Positives = 225/331 (67%), Gaps = 11/331 (3%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
DYYFDSY H+GIHEEML+D VRT SY+N I QNK LFKDK+VLDVG GTGILS+F AK G
Sbjct: 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
A HV V+ S + MAK++VE NGFS+ IT+L+GK+E++ LP KVDIIISEWMGYFLL+
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLY 120
Query: 205 ENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQ 264
E+M++TVLYARD +LV+ G++ PDK S++L +ED++YKD+K+ +W +VYGFD S
Sbjct: 121 ESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPL 180
Query: 265 AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDV 324
+ EP+VDTV++N + T L D++ + D +F + FKL A+R D I+ +V +FD+
Sbjct: 181 VLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDI 240
Query: 325 TF--TKCHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNP 382
F K + + FS TGP + THWKQT+ Y D L G+ I G L +PN+KN
Sbjct: 241 VFPAPKGKRPVEFS----TGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNN 296
Query: 383 RDVDIMLKYSLQ-----GRHSAISRIQYYKM 408
RD++I + Y + G + Y M
Sbjct: 297 RDLNIKISYKFESNGIDGNSRSRKNEGSYLM 327
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 298 bits (764), Expect = e-100
Identities = 148/310 (47%), Positives = 202/310 (65%), Gaps = 5/310 (1%)
Query: 88 FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAH 147
F SY H+GIHEEMLKD +RT+SY++ IYQN +FKDKVVLDVG GTGILS+F AKAGA
Sbjct: 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 60
Query: 148 VYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENM 207
V V+ S++ A I+ N + IT++KGKIEE+ LPV KVD+IISEWMGYFLLFE+M
Sbjct: 61 VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESM 120
Query: 208 LNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMM 267
L++VLYA++K+L G V PD ++ L A+ D D+I FW++VYGF MSC+KK +
Sbjct: 121 LDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIP 180
Query: 268 EPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFT 327
E +V+ +D +++ +K +D D F++ F L R A+ YFD+ F
Sbjct: 181 EAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFE 240
Query: 328 K-CHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVD 386
K CH V++TGP+S THWKQTV LE ++ GEA+ G +TV NKK+PR +
Sbjct: 241 KNCHN----RVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLT 296
Query: 387 IMLKYSLQGR 396
+ L + +
Sbjct: 297 VTLTLNNSTQ 306
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 56.1 bits (134), Expect = 1e-09
Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 7/146 (4%)
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175
+ + VLD+G G G L +AG Y V+ ++ N A+ +
Sbjct: 19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFF 78
Query: 176 LKGKI--EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI---VLPDKA 230
++L I Y L+ + L G +P +
Sbjct: 79 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 138
Query: 231 SLYLTAIEDAEYKDDKIEFWNNVYGF 256
+ L + +D +
Sbjct: 139 VI-LERYKQGRMSNDFYKIELEKMED 163
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 54.8 bits (131), Expect = 4e-09
Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 16/149 (10%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K D++V+D+ AG G LSL A G A V A+E + + N + ++
Sbjct: 103 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 162
Query: 177 KGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTA 236
+ D I+ MGY + + L D I+ + T
Sbjct: 163 NMDNRDFP-GENIADRIL---MGYVVRTHEFIPKAL----SIAKDGAIIH-----YHNTV 209
Query: 237 IEDAEYKD--DKIEFWNNVYGFDMSCIKK 263
E ++ + + YG+D+ + +
Sbjct: 210 PEKLMPREPFETFKRITKEYGYDVEKLNE 238
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 52.1 bits (124), Expect = 1e-08
Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 1/129 (0%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
K+ V +DVG GTG ++L A + + + ++ +G + +T+++G
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239
E + +DI + G L + ++ I+L + + + D
Sbjct: 91 APEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILL-ETKFEAMECLRD 149
Query: 240 AEYKDDKIE 248
+ + E
Sbjct: 150 LGFDVNITE 158
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 49.1 bits (116), Expect = 8e-08
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 12/142 (8%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVL--KG 178
F VLD+ AG+G L++ G + VE ++ A Q + L
Sbjct: 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKME 72
Query: 179 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL--------PDKA 230
I+ + D++ + + + A L + +V+ K
Sbjct: 73 AERAIDCLTGRFDLVFLDPPYAKETIVATIEAL--AAKNLLSEQVMVVCETDKTVLLPKE 130
Query: 231 SLYLTAIEDAEYKDDKIEFWNN 252
L ++ Y K+ + N
Sbjct: 131 IATLGIWKEKIYGISKVTVYVN 152
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 47.3 bits (111), Expect = 9e-07
Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 11/179 (6%)
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQ--NKFLFKDKVVLDVGAGTGILSLFCAKAG 144
++ ++H I++++++ V K + + I + + LD+ GTG L+
Sbjct: 2 CYNKFAH--IYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF 59
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
+M + A+ + G + I + + I +++
Sbjct: 60 KNTWAVDLSQEMLSEAENKFRSQGLKPRL--ACQDISNLNINRKFDLITCCLDSTNYIID 117
Query: 205 ENMLNTVLYARDKWLVDDGIVL-----PDKASLYLTAIEDAEYKDDKIEFWNNVYGFDM 258
+ L A L + G+ + K S L + D+ +W N + D+
Sbjct: 118 SDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDL 176
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.8 bits (102), Expect = 2e-05
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 84 ADYYFDSYSHFGIHEEMLKDV-VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK 142
D Y D + + + + D RT Y+ + VLDV GTG+ S+ +
Sbjct: 18 PDQYADGEAAR-VWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVE 76
Query: 143 AGAAHVYAVECSQMANMAKQIVEANGFSNVI 173
G + +M A +
Sbjct: 77 EGFSVTSVDASDKMLKYALKERWNRRKEPAF 107
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 20/170 (11%), Positives = 52/170 (30%), Gaps = 5/170 (2%)
Query: 87 YFDSYSHF--GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
+ + + I+ ++ V + I++ + + VLD+ GTGI +L A+
Sbjct: 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE-R 62
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
V ++ + + + + + D + +
Sbjct: 63 GYEVVGLDLHEEMLRVARRKAKERNLKIEFL--QGDVLEIAFKNEFDAVTMFFSTIMYFD 120
Query: 205 ENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVY 254
E L + + L G+ + D + + +++ V
Sbjct: 121 EEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVI 170
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 2e-05
Identities = 14/133 (10%), Positives = 39/133 (29%), Gaps = 8/133 (6%)
Query: 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA 143
Y +Y F ++++ + ++D+G+G I + A
Sbjct: 13 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACD 72
Query: 144 GAAHVYAVECS-QMANMAKQIVEANGFSN-------VITVLKGKIEEIELPVTKVDIIIS 195
+ + + + ++ ++ + L+G E K+ +
Sbjct: 73 SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVK 132
Query: 196 EWMGYFLLFENML 208
+ + N L
Sbjct: 133 RVLKCDVHLGNPL 145
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 42.6 bits (99), Expect = 4e-05
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 4/101 (3%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 185
VLD+GAG G +L + V+ ++ + +G E +
Sbjct: 20 VLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78
Query: 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
P DII Y + + + + L DG L
Sbjct: 79 PDDSFDII---TCRYAAHHFSDVRKAVREVARVLKQDGRFL 116
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSN 171
+ V+D G G GIL+ GA V A + A AK+ F
Sbjct: 47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV 98
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 3/107 (2%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
+ +LD+G+G+G + A+ ++ S + + +
Sbjct: 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN 90
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ K D+ +G + + L GI+L
Sbjct: 91 DAAGYVANEKCDVAAC--VGATWIAGGFAGAEELLA-QSLKPGGIML 134
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
F+ +L++G+ G + + + VE S+ A Q +G +
Sbjct: 18 FFRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKDGITY-------I 69
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG---IVLPDKASLY 233
E ++ + + D WL + G +V P+ ++
Sbjct: 70 HSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS 126
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 39.6 bits (91), Expect = 3e-04
Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 27/164 (16%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
L ++ VLDV G G ++ A V A + ++ + + ++G
Sbjct: 13 LKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGD 71
Query: 180 IEEIELPVTKVDIIISEWM---------------------GYFLLFENMLNT-----VLY 213
E++ + I+ G LL +N V Y
Sbjct: 72 AEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFY 131
Query: 214 ARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFD 257
+ D K S +L +E+A ++ +++ ++ + F+
Sbjct: 132 NYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFE 175
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 39.6 bits (92), Expect = 5e-04
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMA-NMAKQIVEANGFSNV 172
+ K+VLD + TGI + A A V+ + S+ A + K+ V N +
Sbjct: 43 ILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGEL 97
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 38.4 bits (88), Expect = 6e-04
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 17/142 (11%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
+Y+ + Y H ++L + LD+G G G SL+ A G
Sbjct: 7 NYFTEKYGLTRTHSDVLAAAK--------------VVAPGRTLDLGCGNGRNSLYLAANG 52
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
+ ++I A G N+ T L + D I+S + FL
Sbjct: 53 YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT--LTFDGEYDFILSTVVMMFLEA 110
Query: 205 ENMLNTVLYARDKWLVDDGIVL 226
+ + ++ + G L
Sbjct: 111 QT-IPGLIANMQRCTKPGGYNL 131
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (90), Expect = 7e-04
Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 7/157 (4%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177
L K +D+G+G G + A G A + E +++ E + ++
Sbjct: 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 273
Query: 178 GKIEEIELPV--TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLT 235
E L + + ++ +N L+ D + I+ K +
Sbjct: 274 LNNVEFSLKKSFVDNNRVAELIPQCDVIL---VNNFLFDEDLNKKVEKILQTAKVGCKII 330
Query: 236 AIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVD 272
+++ +I F+N F+ +++ + E V
Sbjct: 331 SLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVS 367
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 38.1 bits (88), Expect = 0.001
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVL 176
L +L+VG G+G +S + A G + VE A + +
Sbjct: 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS 142
Query: 177 KGKI 180
+ I
Sbjct: 143 RSDI 146
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVL 176
+ VL+ G+G+G +SLF +KA V + E + ++AK+ + S ++ +
Sbjct: 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV 155
Query: 177 KGKIEEIELPVTKVD 191
+ + ++ +
Sbjct: 156 EEWPDNVDFIHKDIS 170
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 36.8 bits (84), Expect = 0.003
Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 7/153 (4%)
Query: 102 KDVVRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
+D+ Y + + + + K ++D G G G L L +
Sbjct: 6 RDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL 65
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+ E + K DI I FLL T+L +
Sbjct: 66 AEARELFRLLPYDSEFLEGDATEIELNDKYDIAIC---HAFLLHMTTPETMLQKMIHSVK 122
Query: 221 DDGIVL---PDKASLYLTAIEDAEYKDDKIEFW 250
G ++ P S + + D E + + I+
Sbjct: 123 KGGKIICFEPHWISNMASYLLDGEKQSEFIQLG 155
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 36.2 bits (83), Expect = 0.004
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGK 179
+D +L +GA G A VYA+E ++ I K
Sbjct: 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK 133
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+E V KVD + + N ++ +L G +
Sbjct: 134 PQEYANIVEKVD-----VIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 409 | |||
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 100.0 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 100.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 100.0 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.79 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.78 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.77 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.77 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.76 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.72 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.72 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.71 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.69 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.67 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.67 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.66 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.65 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.65 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.65 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.63 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.63 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.63 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.61 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.6 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.6 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.58 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.57 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.57 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.55 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.55 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.55 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.54 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.53 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.52 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.52 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.51 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.51 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.5 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.49 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.47 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.45 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.45 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.45 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.44 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.44 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.43 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.42 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.42 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.41 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.4 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.4 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.38 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.37 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.37 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.37 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.37 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.36 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.35 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.33 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.33 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.31 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.3 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.29 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.28 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.17 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.17 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.16 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.16 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.11 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.0 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.98 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.98 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.85 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.82 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.81 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.79 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.72 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.71 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.69 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.67 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.67 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.62 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.61 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.58 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.57 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.56 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.56 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.46 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.46 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.45 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.44 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.41 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.4 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.28 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.22 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.21 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.05 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.96 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.94 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.74 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.51 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.37 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.29 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.28 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.22 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.14 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.03 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.0 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.95 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.91 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.9 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.79 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.65 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.62 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.57 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.54 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.1 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.85 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.71 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.65 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.6 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.58 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.54 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.47 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.33 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.17 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.16 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.14 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.07 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.05 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.02 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.93 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.82 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.74 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.52 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.41 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.4 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.29 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.99 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.22 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.03 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.78 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 92.63 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.32 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 92.06 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.58 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 91.54 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.47 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 91.37 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 91.18 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 91.15 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 90.72 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 90.67 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 90.59 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 90.35 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 89.87 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.78 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.75 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.7 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 89.53 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 89.46 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.44 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 88.9 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 88.9 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 88.71 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 88.68 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.53 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 88.39 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 87.88 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.56 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 86.73 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 86.37 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 86.09 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 85.85 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 85.79 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 85.58 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 85.11 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 84.81 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 84.57 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 84.53 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 83.24 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 82.74 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 81.93 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 81.9 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 80.35 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=5e-59 Score=445.28 Aligned_cols=316 Identities=59% Similarity=1.020 Sum_probs=299.4
Q ss_pred ccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCC
Q 015306 90 SYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF 169 (409)
Q Consensus 90 ~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~ 169 (409)
+|+++++|..||+|..|+..|.++|..+....+|++|||||||+|.+++.+|++|+++|+|+|.|+++..+++++..+++
T Consensus 1 ~y~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~ 80 (316)
T d1oria_ 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL 80 (316)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC
T ss_pred CCccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCC
Confidence 36778899999999999999999998776777999999999999999999999999999999999944677888899999
Q ss_pred CCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccchhhhcc
Q 015306 170 SNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEF 249 (409)
Q Consensus 170 ~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~~~ 249 (409)
.++|+++++|+.+++++.++||+|+++++++++.++..++.++.++.++|||||.++|+.+++|++++++..++.....+
T Consensus 81 ~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~~~~~~~~~~~ 160 (316)
T d1oria_ 81 DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHW 160 (316)
T ss_dssp TTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHTTT
T ss_pred ccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecCHHHHhhhccc
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999888899
Q ss_pred ccccccccchhhhhhhccCCeEEeeCCCcccCcccceeEeeCCCCCCCCCceeeeeEEEEeecceEeEEEEEEEEEEcCC
Q 015306 250 WNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKC 329 (409)
Q Consensus 250 w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~ 329 (409)
|.+++|+|++.+......+|.+....+..++++|+.+++|||.+...+++.+...+++.+.++|++|||++||+++|+++
T Consensus 161 ~~~~~g~d~~~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~g~~hg~~~wFd~~l~~~ 240 (316)
T d1oria_ 161 WENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRC 240 (316)
T ss_dssp TTCBTTBCCHHHHHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGGSEEEEEEEEBCSSEEEEEEEEEEEEECTTS
T ss_pred ccccccccchhhhhhhccccEEEEecCceEeeCCEEeEEEcCCCCcccCccEEEEEEEeecCCceEEEEEEEEEEEeeCC
Confidence 99999999999999999999999888999999999999999999888888889999999999999999999999999977
Q ss_pred CceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEEcceeeeecceEEeeeC
Q 015306 330 HKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 409 (409)
Q Consensus 330 ~~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (409)
++++.|| |+|..+.|||+|++|+|++|+.|++||+|++++.+.++++++|+++|+++|+++|...+...++.|+||
T Consensus 241 ~~~v~lS----T~P~~~~thW~Q~v~~l~~p~~v~~g~~i~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~~ 316 (316)
T d1oria_ 241 HKRTGFS----TSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 316 (316)
T ss_dssp SSCCEEE----CSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSSTTCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CCCeEEE----CCCCcCCCceecEEEEcCCceEcCCCCEEEEEEEEEECCCCCceEEEEEEEEecCeeeccccceeeecC
Confidence 7789999 999999999999999999999999999999999999999999999999999999999999999999997
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-57 Score=435.86 Aligned_cols=320 Identities=51% Similarity=0.910 Sum_probs=298.7
Q ss_pred cccccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHH
Q 015306 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164 (409)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~ 164 (409)
++||+.|.++.+|..|++|..|+..|.++|.+.....++++|||||||+|.+++.+|++|+++|+|+|.|+++..|+++.
T Consensus 1 d~yf~~y~~~~~h~~ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~ 80 (328)
T d1g6q1_ 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELV 80 (328)
T ss_dssp CCCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHH
T ss_pred CCcchhhcCchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 46999999999999999999999999999987777789999999999999999999999999999999999778999999
Q ss_pred HHcCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccch
Q 015306 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKD 244 (409)
Q Consensus 165 ~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~ 244 (409)
..+++.++++++++++.++++++++||+|+++++++++.++..++.++.++.++|||||+++|+.+++|++++++..++.
T Consensus 81 ~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~l~~ 160 (328)
T d1g6q1_ 81 ELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKD 160 (328)
T ss_dssp HHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHH
T ss_pred HHhCccccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccccchhhhhhhccCCeEEeeCCCcccCcccceeEeeCCCCCCCCCceeeeeEEEEeecceEeEEEEEEEE
Q 015306 245 DKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDV 324 (409)
Q Consensus 245 ~~~~~w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~ 324 (409)
....+|..++|+|++.+......+|++..+.+.++++.|..+..+||...+.+++.+...+++.+.++|++|||++||++
T Consensus 161 ~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~hg~~~wFd~ 240 (328)
T d1g6q1_ 161 EKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDI 240 (328)
T ss_dssp HHHHHTTCBTTBCCTTHHHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEE
T ss_pred HhccccccccccccchhhhhhccCcEEEEecCceeecCceeEEEecccccchhhcceeeeEEEEecCCcEEEEEEEEEEE
Confidence 88899999999999999999999999999989999999999999999999888888899999999999999999999999
Q ss_pred EEcCC--CceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEEccee-----
Q 015306 325 TFTKC--HKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRH----- 397 (409)
Q Consensus 325 ~l~~~--~~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~----- 397 (409)
+|+++ ..++.|| |+|..+.|||+|++|+|++|+.|++||+|++++++++++.+.|+++|+++|.++...
T Consensus 241 ~l~~~~~~~~i~lS----T~P~~~~thW~Q~v~~l~~pi~v~~gd~i~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~ 316 (328)
T d1g6q1_ 241 VFPAPKGKRPVEFS----TGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNS 316 (328)
T ss_dssp ECCCCTTSCCCEEE----CSTTSCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETTEEEEEEEEEEEEEECCSSTHHH
T ss_pred EccCCCCCCceEEe----CCCCCCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEecCCCCcc
Confidence 99863 3468999 999999999999999999999999999999999999999999999999999877544
Q ss_pred eeecceEEeee
Q 015306 398 SAISRIQYYKM 408 (409)
Q Consensus 398 ~~~~~~~~~~~ 408 (409)
.+.-++++|-|
T Consensus 317 ~~~~~~~~~~~ 327 (328)
T d1g6q1_ 317 RSRKNEGSYLM 327 (328)
T ss_dssp HCEEEEEEEEE
T ss_pred cceeccceEec
Confidence 33455677776
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-55 Score=417.57 Aligned_cols=306 Identities=49% Similarity=0.855 Sum_probs=285.4
Q ss_pred ccccCchhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH
Q 015306 88 FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA 166 (409)
Q Consensus 88 ~~~~~~~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~ 166 (409)
|+.|+.++.|..|++|..|+..|.++|.+.....++++|||||||+|.+++.+|++|+++|+|+|.|+ +. .+++....
T Consensus 1 ~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~ 79 (311)
T d2fyta1 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRL 79 (311)
T ss_dssp CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHH
T ss_pred CCCcccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHH
Confidence 67889999999999999999999999998888889999999999999999999999999999999999 65 56777788
Q ss_pred cCCCCcEEEEEcccccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCceEEEEccccccchhh
Q 015306 167 NGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDK 246 (409)
Q Consensus 167 ~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~ 246 (409)
+++.++++++++|+.++.++.++||+|+++++++++.++..++.++.++.++|||||+++|+.+++|+++++...++...
T Consensus 80 ~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~v~~~~~~~~~ 159 (311)
T d2fyta1 80 NKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADR 159 (311)
T ss_dssp TTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHH
T ss_pred hCCCccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEEecCHHHHHhh
Confidence 88889999999999999988899999999999999999999999999999999999999999999999999999888888
Q ss_pred hccccccccccchhhhhhhccCCeEEeeCCCcccCcccceeEeeCCCCCCCCCceeeeeEEEEeecceEeEEEEEEEEEE
Q 015306 247 IEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTF 326 (409)
Q Consensus 247 ~~~w~~~~g~d~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l 326 (409)
..+|.+++|+|++.+.+....+|++....+..++++|+.++++||.+...+++.+...+++.+.++|++|||++||+++|
T Consensus 160 ~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~Wfd~~f 239 (311)
T d2fyta1 160 IAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYF 239 (311)
T ss_dssp TGGGGCBTTBCCGGGHHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSCEEEEEEEEEEEEEE
T ss_pred hccccccccccccchhhccccccEEEecChhheecCCEeEEEeccCcCccccccEEEEEEeeecCCcceEEEEEEEEEEE
Confidence 88999999999999999988999999999999999999999999999888888889999999999999999999999998
Q ss_pred cC-CCceeEeecccccCCCCCCCCceeEEEecCCceecCCCCEEEEEEEEeeCCCCCceeEEEEEEEEcceee
Q 015306 327 TK-CHKLMGFSTVYNTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHS 398 (409)
Q Consensus 327 ~~-~~~~~~ls~~~~t~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 398 (409)
.. .+++++|| |+|..+.|||+|++|+|++|+.|++||+|++++++.+++.+.|+++|+++++.+.+.+
T Consensus 240 ~~~~~~~~~lS----T~P~~~~thW~q~~~~l~~p~~v~~gd~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 308 (311)
T d2fyta1 240 EKNCHNRVVFS----TGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLNNSTQTY 308 (311)
T ss_dssp CTTCSSCEEEE----CSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEETTEEEEE
T ss_pred ECCCCCceEEe----CCCCcCCCccccEEEEeCCceEeCCCCEEEEEEEEEECCCCCEEEEEEEEEeCCcEEe
Confidence 75 34579999 9999999999999999999999999999999999999999999999999887554443
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=2.6e-19 Score=161.62 Aligned_cols=112 Identities=21% Similarity=0.311 Sum_probs=98.7
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
...+.+...+.+|.+|||||||+|.++..+++.+. +|+|||+|+ |++.|++++..+++++ +.++++|++++++++++
T Consensus 5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCCSCTTC
T ss_pred HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccccc-ccccccccccccccccc
Confidence 34455667789999999999999999999999864 999999999 9999999999988854 99999999999999899
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
||+|+|..+ +.+..++..+++++.++|||||+++.
T Consensus 83 fD~v~~~~~---l~~~~d~~~~l~~~~r~LkpgG~~~~ 117 (234)
T d1xxla_ 83 FDIITCRYA---AHHFSDVRKAVREVARVLKQDGRFLL 117 (234)
T ss_dssp EEEEEEESC---GGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeeeece---eecccCHHHHHHHHHHeeCCCcEEEE
Confidence 999999654 44556788999999999999999875
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=2.2e-18 Score=156.86 Aligned_cols=115 Identities=22% Similarity=0.336 Sum_probs=96.1
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
+...+.+.....++++|||||||+|.++..+++.|+ +|+|||+|+ |++.|++++...++ +++++++|+++++++ +
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~-~ 104 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-N 104 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-S
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc--cchheehhhhhcccc-c
Confidence 444444445667788999999999999999999987 899999999 99999999988776 499999999999987 7
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+||+|+|........+..++..+++.+.++|||||+++..
T Consensus 105 ~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999999532222334567789999999999999999864
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.1e-18 Score=158.59 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=99.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
...+.+.....+.+|.+|||||||+|.++..+++....+|+|||+|+ +++.|+++....+++++++++.+|+.++. ++
T Consensus 20 ~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-~~ 98 (245)
T d1nkva_ 20 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-AN 98 (245)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-CS
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-cc
Confidence 34455666678899999999999999999999885335999999999 99999999999999999999999999984 55
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++||+|+|..+ +.+..++..++.++.++|||||++++.
T Consensus 99 ~~fD~v~~~~~---~~~~~d~~~~l~~~~r~LkPGG~l~i~ 136 (245)
T d1nkva_ 99 EKCDVAACVGA---TWIAGGFAGAEELLAQSLKPGGIMLIG 136 (245)
T ss_dssp SCEEEEEEESC---GGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred CceeEEEEEeh---hhccCCHHHHHHHHHHHcCcCcEEEEE
Confidence 89999999655 334456789999999999999999865
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.77 E-value=1.4e-18 Score=161.25 Aligned_cols=118 Identities=19% Similarity=0.168 Sum_probs=102.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
+.+.+.+.....+.++.+|||||||+|.++..+++....+|+|||+|+ +++.|+++....++.++++++++|+.+++++
T Consensus 53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~ 132 (282)
T d2o57a1 53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE 132 (282)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccccc
Confidence 345555666677889999999999999999999985334999999999 9999999999999999999999999999988
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++||+|++..+ +.|..++..++.++.++|||||+++..
T Consensus 133 ~~sfD~V~~~~~---l~h~~d~~~~l~~~~~~LkpgG~l~~~ 171 (282)
T d2o57a1 133 DNSYDFIWSQDA---FLHSPDKLKVFQECARVLKPRGVMAIT 171 (282)
T ss_dssp TTCEEEEEEESC---GGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchhhccch---hhhccCHHHHHHHHHHhcCCCcEEEEE
Confidence 899999999655 444467789999999999999998853
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.76 E-value=1.3e-18 Score=156.39 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=93.8
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
...+.++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|++++...+++ +++++++|++++++++++||+|+|
T Consensus 10 ~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l~~~~~~fD~v~~ 87 (231)
T d1vl5a_ 10 IAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDERFHIVTC 87 (231)
T ss_dssp HHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTCEEEEEE
T ss_pred hcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccc-cccccccccccccccccccccccc
Confidence 35678899999999999999999999875 999999999 999999999998885 499999999999988899999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+ +++..++..++.++.++|||||+++.
T Consensus 88 ~~~---l~~~~d~~~~l~~~~r~LkpgG~l~i 116 (231)
T d1vl5a_ 88 RIA---AHHFPNPASFVSEAYRVLKKGGQLLL 116 (231)
T ss_dssp ESC---GGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ccc---ccccCCHHHHHHHHHHhcCCCcEEEE
Confidence 654 44546788999999999999999885
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.72 E-value=2.9e-17 Score=146.51 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
+.++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|++++...+. .+.++.+|+.++++++++||+|+|..+
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~~~~~fD~I~~~~~ 111 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSFEDKTFDYVIFIDS 111 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred cCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc--cccccccccccccccCcCceEEEEecc
Confidence 35778999999999999999999866 899999999 99999999988774 378899999999988899999999765
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..++. ..++..+++.+.++|||||+++..
T Consensus 112 l~~~~-~~d~~~~l~~i~~~LkpgG~lii~ 140 (226)
T d1ve3a1 112 IVHFE-PLELNQVFKEVRRVLKPSGKFIMY 140 (226)
T ss_dssp GGGCC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhCC-hhHHHHHHHHHHHHcCcCcEEEEE
Confidence 44442 346778999999999999998753
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.72 E-value=1.2e-17 Score=151.56 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=90.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe-c
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE-W 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~-~ 197 (409)
..++++|||||||+|.++..+++.|. +|+|||+|+ |++.|++++...++ +++++++|+.+++++ ++||+|+|- .
T Consensus 35 ~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~i~~~~~ 110 (246)
T d1y8ca_ 35 NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLD 110 (246)
T ss_dssp TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTT
T ss_pred CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc--cceeeccchhhhccc-ccccccceeee
Confidence 35568999999999999999999976 999999999 99999999988876 389999999998876 799999984 2
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
..+++.+..++..+++.+.++|||||.++.
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred eeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 234466677888999999999999999985
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.71 E-value=3.6e-17 Score=142.20 Aligned_cols=111 Identities=22% Similarity=0.269 Sum_probs=95.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
.+..+.......++.+|||||||+|.+++.+|+. +.+|+|+|.++ +++.|+++++.+++.++++++++|+.+...+.+
T Consensus 21 ir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~ 99 (186)
T d1l3ia_ 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (186)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence 3444555567789999999999999999999987 45999999999 999999999999998889999999999877778
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.||+|++... . .....+++.+.+.|||||+++.
T Consensus 100 ~~D~v~~~~~---~---~~~~~~~~~~~~~LkpgG~lvi 132 (186)
T d1l3ia_ 100 DIDIAVVGGS---G---GELQEILRIIKDKLKPGGRIIV 132 (186)
T ss_dssp CEEEEEESCC---T---TCHHHHHHHHHHTEEEEEEEEE
T ss_pred CcCEEEEeCc---c---ccchHHHHHHHHHhCcCCEEEE
Confidence 9999998642 1 3356788999999999999874
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.69 E-value=9.6e-17 Score=146.25 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=94.2
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEe
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISE 196 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~ 196 (409)
...++++|||||||+|..+..+++.|.++|+|||+|+ |++.|+++....+...++.++++|+....+. .++||+|+|.
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 4578899999999999999999998888999999999 9999999998888777899999999776653 5789999997
Q ss_pred ccccc-ccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 197 WMGYF-LLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 197 ~~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...++ +..+..+..++..+.++|||||+++.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~ 132 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 132 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEE
Confidence 54443 45567788999999999999999884
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=4.6e-17 Score=147.14 Aligned_cols=99 Identities=27% Similarity=0.413 Sum_probs=82.7
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||+|||+|.++..+++.|+ +|+|+|+|+ |++.|+++. . ..++.+|++++++++++||+|+|.
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~-- 109 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPFPSGAFEAVLAL-- 109 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHT----C---SCEEECCTTSCCSCTTCEEEEEEC--
T ss_pred cCCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccc----c---cccccccccccccccccccceeee--
Confidence 45778999999999999999999876 899999999 999998753 2 236789999999988999999984
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..++++..++..+++.+.++|||||.++..
T Consensus 110 ~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 110 GDVLSYVENKDKAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp SSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence 222444467788999999999999999854
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=3.4e-16 Score=137.19 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||||||+|..+..+++.|. +|+|||+|+ +++.+++.....+++ ++++...|+.++.++ ++||+|++..+.
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~~-~~fD~I~~~~~~ 105 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTFD-GEYDFILSTVVM 105 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCCC-CCEEEEEEESCG
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhcccc-chhhhheeccccccc-ccccEEEEeeee
Confidence 3445999999999999999999976 899999999 999999999998886 499999999998775 899999997765
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++ .......+++.+.++|+|||+++.
T Consensus 106 ~~~-~~~~~~~~l~~~~~~L~pgG~~~~ 132 (198)
T d2i6ga1 106 MFL-EAQTIPGLIANMQRCTKPGGYNLI 132 (198)
T ss_dssp GGS-CTTHHHHHHHHHHHTEEEEEEEEE
T ss_pred ecC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 554 335677899999999999999874
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7e-17 Score=144.29 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=90.9
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
...++.+|||||||+|.++..+++.+..+|+|||+|+ |++.|++++...+.. +++++++|+++++++.++||+|++..
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccc-cccccccccccccccccccccccccc
Confidence 3456789999999999999988776677999999999 999999998877764 48999999999998889999999976
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+++.. ..+..++..+.++|||||.++..
T Consensus 136 ~l~h~~~-~~~~~~l~~i~~~Lk~~G~~~i~ 165 (222)
T d2ex4a1 136 VIGHLTD-QHLAEFLRRCKGSLRPNGIIVIK 165 (222)
T ss_dssp CGGGSCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchh-hhhhhHHHHHHHhcCCcceEEEE
Confidence 6554432 34568999999999999998853
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.65 E-value=4.2e-16 Score=136.26 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=91.6
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcccccccCCCCcee
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D 191 (409)
+.+.....++.+|||+|||+|.+++.+++.+ .+|+++|+|+ +++.|++++..+++.+ +++++.+|+.+ .+++++||
T Consensus 44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD 121 (194)
T d1dusa_ 44 LVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYN 121 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEE
T ss_pred HHHhCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCce
Confidence 3344566789999999999999999999874 5999999999 9999999999999864 69999999987 45568999
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+++++.+. .......+++.+.++|||||.++.
T Consensus 122 ~Ii~~~p~~~--~~~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 122 KIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp EEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcccEEe--cchhhhhHHHHHHHhcCcCcEEEE
Confidence 9999876332 234467889999999999998863
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=2.3e-16 Score=143.11 Aligned_cols=112 Identities=22% Similarity=0.354 Sum_probs=92.8
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015306 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (409)
..++...+++.+. ..+|++|||+|||+|.+++.+++.|+ +|+|+|+|+ +++.|+++++.+++. ++++++|+.+.
T Consensus 105 ~TT~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~ 179 (254)
T d2nxca1 105 ETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA 179 (254)
T ss_dssp HHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH
T ss_pred chhhHHHHHHHhh--cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccc
Confidence 3455666777643 47899999999999999999999875 899999999 999999999999985 57889998765
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++.++||+|+++... ..+..++..+.++|||||+++.+
T Consensus 180 -~~~~~fD~V~ani~~------~~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 180 -LPFGPFDLLVANLYA------ELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp -GGGCCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -ccccccchhhhcccc------ccHHHHHHHHHHhcCCCcEEEEE
Confidence 445899999997531 34667888899999999999853
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=8.7e-16 Score=141.66 Aligned_cols=113 Identities=16% Similarity=0.095 Sum_probs=97.2
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
.+.+...+.+.+|.+|||||||+|.++..+++. |+ +|+|||+|+ +++.|++++...++..++.+...|..+++ +
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~---~ 116 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---E 116 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---C
T ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc---c
Confidence 445666678899999999999999999999985 65 999999999 99999999999999988999998887653 7
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+||.|++..+..++. ....+.+++.+.++|||||+++.+
T Consensus 117 ~fD~i~si~~~eh~~-~~~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 117 PVDRIVSIEAFEHFG-HENYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp CCSEEEEESCGGGTC-GGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred chhhhhHhhHHHHhh-hhhHHHHHHHHHhccCCCceEEEE
Confidence 899999977655543 356789999999999999999864
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=1.7e-15 Score=139.69 Aligned_cols=116 Identities=21% Similarity=0.186 Sum_probs=99.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
...+.+.+.+.+.+|.+|||||||.|.+++.+|+ .|+ +|+||.+|+ .++.|++++...++.+++++..+|..+++
T Consensus 49 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 125 (285)
T d1kpga_ 49 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-- 125 (285)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred HHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--
Confidence 4456667778899999999999999999999888 665 999999999 99999999999999999999999998764
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++||.|+|-.+..++.+ .....+++++.++|||||+++.+.
T Consensus 126 -~~fD~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 126 -EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp -CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -ccccceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEE
Confidence 78999999766544433 456789999999999999998543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=1.9e-15 Score=139.81 Aligned_cols=117 Identities=18% Similarity=0.062 Sum_probs=97.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (409)
...+.+.+...+.+|.+|||||||.|.+++.+|+ .|+ +|+||++|+ .++.+++.+...++.+++++...|... .
T Consensus 48 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~---~ 123 (291)
T d1kpia_ 48 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE---F 123 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG---C
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc---c
Confidence 3455566678899999999999999999999887 665 999999999 999999999999999999999988754 3
Q ss_pred CCceeEEEEecccccccC------hhHHHHHHHHHHhcccCCeEEEccC
Q 015306 187 VTKVDIIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+++||.|+|..+..++.. ....+.+++.+.++|||||+++.+.
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 489999999765444432 2457899999999999999998543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.63 E-value=1e-15 Score=136.89 Aligned_cols=106 Identities=19% Similarity=0.259 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs 195 (409)
..++.+|||||||+|..+..+++. +..+|+|+|+|+ |++.|++++...+...++.+..+|+.++++ +.+|+|++
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~--~~~d~i~~ 114 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI--KNASMVIL 114 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC--CSEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc--ccceeeEE
Confidence 578899999999999999999983 455999999999 999999999888877789999999877654 68899999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+.+++ +..+...+++.+.++|||||.++..
T Consensus 115 ~~~l~~~-~~~d~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 115 NFTLQFL-PPEDRIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp ESCGGGS-CGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeecccc-ChhhHHHHHHHHHHhCCCCceeecc
Confidence 7654443 4467789999999999999999853
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.61 E-value=1.7e-15 Score=138.02 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=90.1
Q ss_pred hccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 116 QNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
+.....++.+|||+|||+|.++..++..+..+|++||+|+ |++.|++++... .+++++++|++++++++++||+|+
T Consensus 87 ~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~I~ 163 (254)
T d1xtpa_ 87 ASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLIV 163 (254)
T ss_dssp HTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEEE
T ss_pred hhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCccceEE
Confidence 3345567789999999999999988875566999999999 999999876533 458999999999998888999999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.++.+++.. .++..+++.+.++|||||.++..
T Consensus 164 ~~~vl~hl~d-~d~~~~l~~~~~~LkpgG~iii~ 196 (254)
T d1xtpa_ 164 IQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp EESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeccccccch-hhhHHHHHHHHHhcCCCcEEEEE
Confidence 9877555532 34668899999999999998853
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.60 E-value=1.9e-15 Score=139.69 Aligned_cols=114 Identities=21% Similarity=0.259 Sum_probs=93.1
Q ss_pred HHHHHHHhc-cCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015306 109 SYQNVIYQN-KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (409)
Q Consensus 109 ~~~~~l~~~-~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (409)
.|.+.|... ....++.+|||||||+|.++..+++. + ..+|+|+|+|+ +++.|++++...+. +++++++|+.+++
T Consensus 13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~ 90 (281)
T d2gh1a1 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE 90 (281)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC
T ss_pred HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccc
Confidence 344545432 34567889999999999999999984 3 35899999999 99999999987765 4999999999988
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++ ++||+|++..+ +++..++..+++.+.+.|||||.++..
T Consensus 91 ~~-~~fD~v~~~~~---l~~~~d~~~~l~~~~~~LkpgG~lii~ 130 (281)
T d2gh1a1 91 LN-DKYDIAICHAF---LLHMTTPETMLQKMIHSVKKGGKIICF 130 (281)
T ss_dssp CS-SCEEEEEEESC---GGGCSSHHHHHHHHHHTEEEEEEEEEE
T ss_pred cc-CCceEEEEehh---hhcCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 76 78999999765 444466788999999999999998743
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.60 E-value=8.4e-16 Score=133.83 Aligned_cols=108 Identities=12% Similarity=-0.015 Sum_probs=87.0
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC-----------CCcEEEEEcccccccC
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF-----------SNVITVLKGKIEEIEL 185 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~~~~ 185 (409)
+...++.+|||+|||+|..+..+|+.|. +|+|+|+|+ |++.|++++...+. ...++++.+|+.++..
T Consensus 16 l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 16 LNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 4568999999999999999999999987 999999999 99999998865432 1235788888877763
Q ss_pred C-CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~-~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
. ...||+|++..+..++ .......+++.+.++|||||.++.
T Consensus 95 ~~~~~~D~i~~~~~l~~l-~~~~~~~~~~~i~~~LkpgG~l~l 136 (201)
T d1pjza_ 95 RDIGHCAAFYDRAAMIAL-PADMRERYVQHLEALMPQACSGLL 136 (201)
T ss_dssp HHHHSEEEEEEESCGGGS-CHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred ccccceeEEEEEeeeEec-chhhhHHHHHHHHHhcCCCcEEEE
Confidence 2 4689999997654444 335667899999999999999763
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.58 E-value=1.5e-15 Score=127.25 Aligned_cols=105 Identities=20% Similarity=0.247 Sum_probs=87.9
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~DvVvs~~ 197 (409)
...|++|||+|||+|.+++.++.+|+++|+++|.++ +++.+++++..+++.++++++++|+... ....++||+|+++|
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 357999999999999999999999999999999999 9999999999999999999999999875 34458999999987
Q ss_pred ccccccChhHHHHHHHHH--HhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYAR--DKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~ 228 (409)
+ | ........++.+ .++|+|||.++.+
T Consensus 92 P-y---~~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 92 P-Y---AKETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp S-S---HHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred h-h---ccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 4 2 223344445544 3689999999865
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.57 E-value=1.6e-15 Score=135.64 Aligned_cols=98 Identities=20% Similarity=0.319 Sum_probs=82.8
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..++.+|||||||+|.++..+++.|. +|+|||+|+ +++.|+++.. +++.+++++++++.++ ++||+|++..+
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~-~~fD~I~~~~v 90 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLP-RRYDNIVLTHV 90 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCS-SCEEEEEEESC
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc-----cccccccccccccccc-cccccccccce
Confidence 35677899999999999999999875 799999999 9999987643 4599999999998875 89999999655
Q ss_pred cccccChhHHHHHHHHHH-hcccCCeEEEc
Q 015306 199 GYFLLFENMLNTVLYARD-KWLVDDGIVLP 227 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~-~~LkpgG~lip 227 (409)
+.|..++..++.++. ++|+|||.++.
T Consensus 91 ---leh~~d~~~~l~~i~~~~Lk~gG~l~i 117 (225)
T d2p7ia1 91 ---LEHIDDPVALLKRINDDWLAEGGRLFL 117 (225)
T ss_dssp ---GGGCSSHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---eEecCCHHHHHHHHHHHhcCCCceEEE
Confidence 445567778888886 89999999884
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=2.9e-15 Score=139.31 Aligned_cols=121 Identities=18% Similarity=0.124 Sum_probs=87.8
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC---CcEEEEEccccc
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS---NVITVLKGKIEE 182 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~---~~i~~~~~d~~~ 182 (409)
...+.+++.......++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|+++....+.. ....+...++..
T Consensus 41 ~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (292)
T d1xvaa_ 41 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence 334444444444446778999999999999999999986 899999999 999999998876653 123455555543
Q ss_pred cc--C-CCCceeEEEEec-ccccccC----hhHHHHHHHHHHhcccCCeEEEcc
Q 015306 183 IE--L-PVTKVDIIISEW-MGYFLLF----ENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 183 ~~--~-~~~~~DvVvs~~-~~~~l~~----~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+. + ..++||+|+|.. ...++.. ...+..+++.+.++|||||++|+.
T Consensus 120 ~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp HHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 32 1 247899999842 1222322 346778999999999999999853
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7.5e-15 Score=131.53 Aligned_cols=117 Identities=14% Similarity=-0.092 Sum_probs=92.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC----------------CCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG----------------FSN 171 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~----------------~~~ 171 (409)
.+.+.+.+.....++.+|||+|||+|..+..+|+.|+ +|+|||+|+ +++.|++...... ...
T Consensus 32 ~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (229)
T d2bzga1 32 LLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSG 110 (229)
T ss_dssp HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCC
Confidence 4444454445567889999999999999999999988 999999999 9999988764321 124
Q ss_pred cEEEEEccccccc-CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 172 VITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 172 ~i~~~~~d~~~~~-~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++++++|+.++. ...+.||+|+...+.+++ +....+.++..+.++|||||.++.
T Consensus 111 ~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~-~~~~r~~~~~~~~~~LkpgG~~~l 166 (229)
T d2bzga1 111 NISLYCCSIFDLPRTNIGKFDMIWDRGALVAI-NPGDRKCYADTMFSLLGKKFQYLL 166 (229)
T ss_dssp SEEEEESCGGGGGGSCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred cEEEEEcchhhccccccCceeEEEEEEEEEec-cchhhHHHHHHHHhhcCCcceEEE
Confidence 6999999998886 345789999987654444 345678899999999999998763
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=6.5e-15 Score=131.94 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEec
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISEW 197 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~DvVvs~~ 197 (409)
.+|.+|||||||+|..+..+++.+..+|++||+|+ +++.|+++....+ .++.++..++... .++.++||.|+.+.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeecc
Confidence 57889999999999999999997667999999999 9999999987655 4588888887765 35678999999764
Q ss_pred c--cccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 198 M--GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 198 ~--~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+ .+.+.+..+.+.+++.+.++|||||+++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred cccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 3 33455566788899999999999999874
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.55 E-value=3.6e-15 Score=131.42 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
.++.+|||||||+|.++..++ +++|||+|+ +++.|+++ +++++++|++++++++++||+|++..+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~- 100 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTT- 100 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESC-
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------ccccccccccccccccccccccccccc-
Confidence 456789999999999887763 578999999 99998863 389999999999988899999999765
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+..++..++.++.++|+|||.++..
T Consensus 101 --l~h~~d~~~~l~~~~~~L~pgG~l~i~ 127 (208)
T d1vlma_ 101 --ICFVDDPERALKEAYRILKKGGYLIVG 127 (208)
T ss_dssp --GGGSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred --cccccccccchhhhhhcCCCCceEEEE
Confidence 444467889999999999999998854
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.54 E-value=7.5e-15 Score=132.44 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=87.3
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (409)
.|.....+.+|.+|||+|||+|.++..+|+. +..+|+++|.++ +++.|++++...+..+++++..+|+.+. ++++.
T Consensus 76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~ 154 (250)
T d1yb2a1 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQM 154 (250)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCC
T ss_pred HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccce
Confidence 3455577899999999999999999999984 456999999999 9999999999877667899999999886 44589
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
||.|+.+.. .+..++..+.++|||||+++.
T Consensus 155 fD~V~ld~p--------~p~~~l~~~~~~LKpGG~lv~ 184 (250)
T d1yb2a1 155 YDAVIADIP--------DPWNHVQKIASMMKPGSVATF 184 (250)
T ss_dssp EEEEEECCS--------CGGGSHHHHHHTEEEEEEEEE
T ss_pred eeeeeecCC--------chHHHHHHHHHhcCCCceEEE
Confidence 999997642 334668888999999999884
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.53 E-value=1.7e-14 Score=130.83 Aligned_cols=108 Identities=27% Similarity=0.323 Sum_probs=91.1
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHc--CCCCcEEEEEcccccccCC
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEAN--GFSNVITVLKGKIEEIELP 186 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~ 186 (409)
..|.....+.||.+|||+|||+|.+++.+|+. | ..+|+++|.++ +++.|+++++.. +..+++.++++|+.+..++
T Consensus 86 s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~ 165 (264)
T d1i9ga_ 86 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP 165 (264)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred HHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc
Confidence 34555577899999999999999999999994 4 56999999999 999999998864 3456799999999998888
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++.||.|+.+. +++..++..+.++|||||+++.
T Consensus 166 ~~~fDaV~ldl--------p~P~~~l~~~~~~LkpGG~lv~ 198 (264)
T d1i9ga_ 166 DGSVDRAVLDM--------LAPWEVLDAVSRLLVAGGVLMV 198 (264)
T ss_dssp TTCEEEEEEES--------SCGGGGHHHHHHHEEEEEEEEE
T ss_pred CCCcceEEEec--------CCHHHHHHHHHhccCCCCEEEE
Confidence 89999999754 2344678889999999999873
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=2.3e-14 Score=134.82 Aligned_cols=109 Identities=25% Similarity=0.262 Sum_probs=91.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 194 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVv 194 (409)
..+|++|||+|||+|.+++.++..|+++|+++|+|+ +++.|++++..||+.++++++++|+.+.. ....+||+|+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 467999999999999999999999999999999999 99999999999999888999999997743 2347899999
Q ss_pred EecccccccChh-------HHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFEN-------MLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~-------~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
++++.. ..+.. ....++..+.++|+|||+++.++
T Consensus 223 ~DpP~~-~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 223 LDPPAF-VQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 263 (324)
T ss_dssp ECCCCS-CSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCccc-cCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 997533 32222 33567778889999999998654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=4.2e-14 Score=129.07 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=104.1
Q ss_pred hhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCC
Q 015306 94 FGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSN 171 (409)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~ 171 (409)
+......+-+++.++.+.+...... ...+.+|||+|||+|.+++.++. .+..+|+|+|+|+ +++.|++|+..+++.
T Consensus 81 ~~v~~~VlIPRpeTE~lv~~~l~~~-~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~- 158 (274)
T d2b3ta1 81 LFVSPATLIPRPDTECLVEQALARL-PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK- 158 (274)
T ss_dssp EECCTTSCCCCTTHHHHHHHHHHHS-CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-
T ss_pred EEEeccccccccchhhhhhhHhhhh-cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-
Confidence 4455667778888988887665533 34567899999999999999988 6677999999999 999999999999995
Q ss_pred cEEEEEcccccccCCCCceeEEEEecccccccC-----------h------------hHHHHHHHHHHhcccCCeEEEcc
Q 015306 172 VITVLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------E------------NMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 172 ~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~-----------~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++++++|+.+. ++..+||+|||+++ |.... + .....++....++|+|||.++..
T Consensus 159 ~v~~~~~d~~~~-~~~~~fDlIvsNPP-Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 159 NIHILQSDWFSA-LAGQQFAMIVSNPP-YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp SEEEECCSTTGG-GTTCCEEEEEECCC-CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cceeeecccccc-cCCCceeEEEecch-hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 599999999774 44479999999974 43211 1 12457888889999999998854
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.51 E-value=8.7e-14 Score=126.39 Aligned_cols=113 Identities=23% Similarity=0.249 Sum_probs=90.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
.+.......+.++|||||||+|.++..+++ .+..+++++|.+++++.+++++...++.++++++.+|+.+. .+ .+||
T Consensus 71 ~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~-~~~D 148 (253)
T d1tw3a2 71 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LP-RKAD 148 (253)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS-SCEE
T ss_pred HHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-cc-cchh
Confidence 334445567778999999999999999998 45679999998349999999999999999999999998763 33 6799
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+|++..+.+++. ......+++++++.|||||+++..
T Consensus 149 ~v~~~~vlh~~~-d~~~~~~L~~~~~~LkPGG~l~i~ 184 (253)
T d1tw3a2 149 AIILSFVLLNWP-DHDAVRILTRCAEALEPGGRILIH 184 (253)
T ss_dssp EEEEESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred heeeccccccCC-chhhHHHHHHHHHhcCCCcEEEEE
Confidence 999876544432 234568899999999999998753
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.51 E-value=1.9e-14 Score=130.91 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=85.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
..+|.+|||+|||+|.+++.+|+.|+++|+|+|+|+ +++.+++++..|++.++++++++|+.++... +.||.|+++++
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~-~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE-NIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC-SCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC-CCCCEEEECCC
Confidence 468999999999999999999998888999999999 9999999999999999999999999987654 78999998764
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.+. ..++....++|++||++.
T Consensus 184 ~~~-------~~~l~~a~~~l~~gG~lh 204 (260)
T d2frna1 184 VRT-------HEFIPKALSIAKDGAIIH 204 (260)
T ss_dssp SSG-------GGGHHHHHHHEEEEEEEE
T ss_pred Cch-------HHHHHHHHhhcCCCCEEE
Confidence 321 234555668899999875
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=9.3e-14 Score=122.78 Aligned_cols=103 Identities=24% Similarity=0.208 Sum_probs=83.7
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
+.....+.+|.+|||||||+|.++..+++ .| ..+|+++|.++ +++.|++++...++.+ +.++++|..+.....++|
T Consensus 67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~~~~~~~~~f 145 (213)
T d1dl5a1 67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEFSPY 145 (213)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGCCE
T ss_pred HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchHHccccccch
Confidence 34446789999999999999999999998 44 55899999999 9999999999988865 889999998876666789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|+|++... +.+ .+ +.+.+.|||||+++
T Consensus 146 D~I~~~~~---~~~--~p----~~l~~~LkpGG~lv 172 (213)
T d1dl5a1 146 DVIFVTVG---VDE--VP----ETWFTQLKEGGRVI 172 (213)
T ss_dssp EEEEECSB---BSC--CC----HHHHHHEEEEEEEE
T ss_pred hhhhhhcc---HHH--hH----HHHHHhcCCCcEEE
Confidence 99998653 222 12 23457799999986
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.49 E-value=7.4e-14 Score=122.93 Aligned_cols=103 Identities=23% Similarity=0.201 Sum_probs=84.4
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC---Ccee
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV---TKVD 191 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D 191 (409)
...+.||.+|||||||+|..+..+++ .+..+|+|+|+|+ |++.|++++...+ ++.++.+|+....... ..+|
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTTTCCCEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccccccceEE
Confidence 35788999999999999999999998 5667999999999 9999999988763 5999999998876442 4566
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+++ +.+......++.++.++|||||.++.
T Consensus 128 ~v~~~-----~~~~~~~~~~l~~~~~~LkpgG~l~i 158 (209)
T d1nt2a_ 128 LIYQD-----IAQKNQIEILKANAEFFLKEKGEVVI 158 (209)
T ss_dssp EEEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEec-----ccChhhHHHHHHHHHHHhccCCeEEE
Confidence 66553 23445677889999999999999874
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1e-13 Score=126.98 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=77.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
..++.+|||||||+|.++..+++.+ ..+++|+|+|+ +++.|++.. .+++++++|+.++++++++||+|++..
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~ 155 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIY 155 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEEEeecC
Confidence 4567899999999999999999964 45999999999 999998753 348999999999999989999999854
Q ss_pred ccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
. +.+ +.++.|+|||||.++..
T Consensus 156 ~---~~~-------~~e~~rvLkpgG~l~~~ 176 (268)
T d1p91a_ 156 A---PCK-------AEELARVVKPGGWVITA 176 (268)
T ss_dssp C---CCC-------HHHHHHHEEEEEEEEEE
T ss_pred C---HHH-------HHHHHHHhCCCcEEEEE
Confidence 3 222 35678999999999853
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=1.1e-13 Score=126.12 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=90.6
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
..|.....+.+|.+|||+|||+|.++..+|+. | ..+|+++|.++ +++.|++++...++.+++.+...|+... ++..
T Consensus 93 ~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-~~~~ 171 (266)
T d1o54a_ 93 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEK 171 (266)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCC
T ss_pred HHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc-cccc
Confidence 34555678899999999999999999999984 3 56999999999 9999999999999988899999997654 4457
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+|.|+... +++..++..+.++|||||+++.
T Consensus 172 ~~D~V~~d~--------p~p~~~l~~~~~~LKpGG~lv~ 202 (266)
T d1o54a_ 172 DVDALFLDV--------PDPWNYIDKCWEALKGGGRFAT 202 (266)
T ss_dssp SEEEEEECC--------SCGGGTHHHHHHHEEEEEEEEE
T ss_pred ceeeeEecC--------CCHHHHHHHHHhhcCCCCEEEE
Confidence 899998643 3455778999999999999874
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.45 E-value=3.2e-13 Score=120.46 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=81.5
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEE
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 193 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvV 193 (409)
...+.+|.+|||||||+|..+..+++. +...|+|||+|+ |++.|++.+... .++..+.+|..... ..+..+|++
T Consensus 69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccccccceeE
Confidence 356789999999999999999999995 466999999999 999998886654 34778888887654 233455655
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
++.. .+.+......++.++.++|||||.++.
T Consensus 146 ~i~~---~~~~~~~~~~~l~~~~r~LKpgG~~~i 176 (230)
T d1g8sa_ 146 VIYE---DVAQPNQAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp EEEE---CCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred Eeec---cccchHHHHHHHHHHHHhcccCceEEE
Confidence 5421 233456778889999999999998774
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.45 E-value=2.8e-13 Score=118.57 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEec
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~ 197 (409)
++..|||||||+|..+..+|+ .+...++|||+++ ++..|.+.+...++. ++.++++|+..+. ++++++|.|++..
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-CchhcccchhhhhcccCchhhhcccccc
Confidence 456899999999999999998 5677999999999 999999999999996 4999999998875 6778999999754
Q ss_pred ccccccChh-----HHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLLFEN-----MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~~~~-----~~~~~l~~~~~~LkpgG~lip~ 228 (409)
......... ..+.+++.+.++|||||.++..
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 332221111 1257899999999999998753
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.44 E-value=2.6e-13 Score=126.76 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=91.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEccccccc----CCCCceeEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE----LPVTKVDII 193 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~~~DvV 193 (409)
..+|++|||++||+|.+++.++..|+.+|++||.|+ +++.|++++..|+++ ++++++++|+.+.- ....+||+|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 467899999999999999999999999999999999 999999999999985 57999999997652 234689999
Q ss_pred EEecccccc------cChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 194 ISEWMGYFL------LFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 194 vs~~~~~~l------~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+++++.+.- ........++..+.++|+|||+++.+++
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999753221 1123456788888999999999986543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=1.4e-13 Score=128.97 Aligned_cols=108 Identities=21% Similarity=0.211 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs 195 (409)
.+|++|||+|||+|.+++.+|+ |+++|+++|.|+ +++.|++++..||++ +++++++|+.++. ...++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 4789999999999999999886 466999999999 999999999999996 4999999997742 33578999999
Q ss_pred ecccccccC------hhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 196 EWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 196 ~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
++..+.... ......++..+.++|+|||.++.+++
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 975332221 12345677888899999999985443
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=1.5e-13 Score=117.07 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc--ccCCCCceeEEEEe
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPVTKVDIIISE 196 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~DvVvs~ 196 (409)
..++.+|||+|||+|.+++.++..|+ +|+++|.++ +++.++++++.+++.+++....+|... .....++||+|+++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 46788999999999999999999987 899999999 999999999999998766555555422 12335789999999
Q ss_pred cccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+ |.......+..++. ..+|+|||+++.+
T Consensus 118 PP-Y~~~~~~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 118 PP-YAMDLAALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp CC-TTSCTTHHHHHHHH--HTCEEEEEEEEEE
T ss_pred cc-cccCHHHHHHHHHH--cCCcCCCeEEEEE
Confidence 84 43333333334433 3689999998853
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.42 E-value=1e-12 Score=119.28 Aligned_cols=112 Identities=22% Similarity=0.179 Sum_probs=90.3
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
+.+.....+..+|||||||+|.++..+++ .+..+++++|+.++++.+++++...++.++++++.+|+.+ +.+ .++|+
T Consensus 73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~ 150 (256)
T d1qzza2 73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADV 150 (256)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEE
T ss_pred HHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchh
Confidence 33344556778999999999999999999 4566999999844899999999999999999999999876 344 56999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|++..+.+.+. ......+++++++.|||||+++..
T Consensus 151 v~~~~vLh~~~-d~~~~~lL~~i~~~LkpgG~llI~ 185 (256)
T d1qzza2 151 VLLSFVLLNWS-DEDALTILRGCVRALEPGGRLLVL 185 (256)
T ss_dssp EEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhccccccccC-cHHHHHHHHHHHhhcCCcceeEEE
Confidence 99876544332 234568899999999999988753
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.42 E-value=2.7e-13 Score=125.26 Aligned_cols=124 Identities=19% Similarity=0.126 Sum_probs=95.3
Q ss_pred hhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEE
Q 015306 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLK 177 (409)
Q Consensus 100 ~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~ 177 (409)
++-|...+..+...... ...++++|||++||+|.+++.++..|+ +|++||.|+ +++.|++|+..|++.+ ++++++
T Consensus 112 ~f~dqr~nr~~~~~~~~--~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~ 188 (309)
T d2igta1 112 VFPEQIVHWEWLKNAVE--TADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC 188 (309)
T ss_dssp CCGGGHHHHHHHHHHHH--HSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC
T ss_pred cccchhHHHHHHHHHHh--hccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEe
Confidence 44455555555443332 235788999999999999999999888 899999999 9999999999999875 699999
Q ss_pred ccccccc----CCCCceeEEEEeccccccc-------ChhHHHHHHHHHHhcccCCeEEE
Q 015306 178 GKIEEIE----LPVTKVDIIISEWMGYFLL-------FENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 178 ~d~~~~~----~~~~~~DvVvs~~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+|+.++. ....+||+||+++.-+... .+..+..++..+.++|+|||.++
T Consensus 189 ~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~l 248 (309)
T d2igta1 189 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 248 (309)
T ss_dssp SCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred CCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 9998753 2247899999997543221 13455677788889999999755
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.8e-13 Score=127.58 Aligned_cols=114 Identities=19% Similarity=0.253 Sum_probs=89.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHc-------CC-CCcEEEEEccc
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-------GF-SNVITVLKGKI 180 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~-------~~-~~~i~~~~~d~ 180 (409)
...+.+...+.++.+|||||||+|.+++.+|+ .|+.+++|||+++ +++.|++..... |+ ..+++++++|+
T Consensus 140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~ 219 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 219 (328)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence 34445556788999999999999999999987 6788999999999 999998876542 22 24599999999
Q ss_pred ccccCCCC--ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 181 EEIELPVT--KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 181 ~~~~~~~~--~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.+.++.+. .+|+|+++.+ . +...+...+.++.+.|||||++|..
T Consensus 220 ~~~~~~~~~~~advi~~~~~---~-f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 220 LSEEWRERIANTSVIFVNNF---A-FGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp TSHHHHHHHHHCSEEEECCT---T-TCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccccccccCcceEEEEcce---e-cchHHHHHHHHHHHhCCCCcEEEEe
Confidence 98876533 3688887532 2 3356778889999999999999843
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.1e-12 Score=116.66 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=80.9
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCC----CcEEEEEcccccccCCCCcee
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFS----NVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~D 191 (409)
...+|.+|||||||+|.++..+|+. | ..+|+++|.++ +++.|++++...++. +++.++.+|......+.++||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 5689999999999999999999984 4 56999999999 999999999876643 469999999988777778999
Q ss_pred EEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+|++... +.+ .+ ..+.+.|||||+++
T Consensus 153 ~I~~~~~---~~~--ip----~~l~~~LkpGG~LV 178 (224)
T d1i1na_ 153 AIHVGAA---APV--VP----QALIDQLKPGGRLI 178 (224)
T ss_dssp EEEECSB---BSS--CC----HHHHHTEEEEEEEE
T ss_pred hhhhhcc---hhh--cC----HHHHhhcCCCcEEE
Confidence 9998643 222 11 34568899999987
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.40 E-value=3.9e-13 Score=115.60 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=86.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEE
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 194 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVv 194 (409)
..++.+|||++||+|.+++.++.+|+++|++||.++ +++.+++++...+..++++++++|+...- ....+||+|+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 467899999999999999999999999999999999 99999999999998888999999997742 2346899999
Q ss_pred EecccccccChhHHHHHHHHHH--hcccCCeEEEcc
Q 015306 195 SEWMGYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (409)
++|+ |.. .....++..+. .+|+++|+++.+
T Consensus 119 lDPP-Y~~---~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 119 LDPP-YAK---QEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp ECCC-GGG---CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echh-hhh---hHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 9984 322 23344455443 589999998854
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=6.4e-13 Score=124.12 Aligned_cols=107 Identities=20% Similarity=0.270 Sum_probs=84.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHc----------CCCCcEEEEEcc
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEAN----------GFSNVITVLKGK 179 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~----------~~~~~i~~~~~d 179 (409)
.|.....+.+|.+|||+|||+|.++..+|+. | ..+|+++|+++ +++.|+++++.. ++.+++++.++|
T Consensus 89 ~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d 168 (324)
T d2b25a1 89 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 168 (324)
T ss_dssp HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence 3445567899999999999999999999994 4 56999999999 999999999853 445779999999
Q ss_pred ccccc--CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 180 IEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 180 ~~~~~--~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+.. ++...||.|+.++. .+..++..+.++|||||+++.
T Consensus 169 i~~~~~~~~~~~fD~V~LD~p--------~P~~~l~~~~~~LKpGG~lv~ 210 (324)
T d2b25a1 169 ISGATEDIKSLTFDAVALDML--------NPHVTLPVFYPHLKHGGVCAV 210 (324)
T ss_dssp TTCCC-------EEEEEECSS--------STTTTHHHHGGGEEEEEEEEE
T ss_pred hhhcccccCCCCcceEeecCc--------CHHHHHHHHHHhccCCCEEEE
Confidence 98764 34578999997542 233567889999999999873
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.37 E-value=1e-12 Score=119.48 Aligned_cols=134 Identities=24% Similarity=0.279 Sum_probs=102.4
Q ss_pred hhhhHHhhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc
Q 015306 94 FGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV 172 (409)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~ 172 (409)
+......+-+++.++.+.+.+.+.....+..+|||+|||+|..++.+++.+..+|+|+|+|+ +++.|++|+..+++.++
T Consensus 82 f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~ 161 (271)
T d1nv8a_ 82 FLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDR 161 (271)
T ss_dssp EECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTS
T ss_pred EEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCce
Confidence 34455567788888888887766544455679999999999999999998888999999999 99999999999999999
Q ss_pred EEEEEcccccccC-CCCceeEEEEeccccccc---------ChhH---------HHHHHHHHHhcccCCeEEEcc
Q 015306 173 ITVLKGKIEEIEL-PVTKVDIIISEWMGYFLL---------FENM---------LNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 173 i~~~~~d~~~~~~-~~~~~DvVvs~~~~~~l~---------~~~~---------~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+..+|+.+... ..++||+|||++. |.-. +|+. +.-+.+-+.++|+|||.++..
T Consensus 162 ~~i~~~~~~~~~~~~~~~fDlIVsNPP-YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E 235 (271)
T d1nv8a_ 162 FFVRKGEFLEPFKEKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 235 (271)
T ss_dssp EEEEESSTTGGGGGGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred eEEeecccccccccccCcccEEEEccc-ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence 9999999877542 2378999999973 3211 2221 122222346889999998854
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.37 E-value=1.6e-12 Score=114.99 Aligned_cols=99 Identities=22% Similarity=0.225 Sum_probs=78.4
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
.+.+.+.++.+|||||||+|.++..+++.+ .+|+++|.++ +++.|+++.... +++.++.+|......+.++||+|
T Consensus 63 l~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pfD~I 138 (224)
T d1vbfa_ 63 LDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPYDRV 138 (224)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCEEEE
T ss_pred HHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhHHHH
Confidence 344678899999999999999999999984 5999999999 999999887643 46999999987755555789999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
++... +.+ .+ ..+.+.|||||+++
T Consensus 139 iv~~a---~~~--ip----~~l~~qLk~GGrLV 162 (224)
T d1vbfa_ 139 VVWAT---APT--LL----CKPYEQLKEGGIMI 162 (224)
T ss_dssp EESSB---BSS--CC----HHHHHTEEEEEEEE
T ss_pred Hhhcc---hhh--hh----HHHHHhcCCCCEEE
Confidence 98542 221 12 33457899999976
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.37 E-value=2.1e-12 Score=112.86 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=85.4
Q ss_pred CCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEec
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~DvVvs~~ 197 (409)
....|||||||+|.++..+|+ .+...++|||+++ ++..|.+.+...++++ +.++.+|+.++. ++..++|.|++..
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhhccCCceehhcccc
Confidence 445899999999999999998 5677999999999 9999999999999965 999999998875 6678999998754
Q ss_pred cccccc--Chh---HHHHHHHHHHhcccCCeEEEcc
Q 015306 198 MGYFLL--FEN---MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 198 ~~~~l~--~~~---~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+....- |.. ..+.++..+.++|||||.++..
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 322111 000 1268899999999999998753
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=7.6e-13 Score=113.96 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVvs~~~ 198 (409)
..+.+|||++||+|.+++.++.+|+.+|++||.++ +++.+++++...+..+ ++++.+|+.++. ....+||+|+++|+
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~-~~ii~~d~~~~l~~~~~~fDlIf~DPP 120 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN-ARVVNSNAMSFLAQKGTPHNIVFVDPP 120 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccc-eeeeeecccccccccccccCEEEEcCc
Confidence 47789999999999999999999999999999999 9999999999888754 899999988753 33578999999985
Q ss_pred cccccChhHHHHHHHHHH--hcccCCeEEEcc
Q 015306 199 GYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (409)
|. ......++..+. .+|+++|+++.+
T Consensus 121 -Y~---~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 121 -FR---RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp -SS---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred -cc---cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 32 234445555543 579999998853
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.6e-13 Score=124.45 Aligned_cols=110 Identities=11% Similarity=0.096 Sum_probs=80.2
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-------------------------
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV------------------------- 172 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~------------------------- 172 (409)
...++.+|||||||+|.+++.++..+..+|+|+|+|+ +++.|++++........
T Consensus 48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3467889999999999998888887777999999999 99999999876543210
Q ss_pred ---E-EEEEcccc----cccCCCCceeEEEEecccccc-cChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 173 ---I-TVLKGKIE----EIELPVTKVDIIISEWMGYFL-LFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 173 ---i-~~~~~d~~----~~~~~~~~~DvVvs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+ .....+.. ..+++.++||+|++..+.+++ .....+..+++.+.++|||||.+|..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~ 192 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 192 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEE
Confidence 0 11111111 123456889999996554433 23357788999999999999998853
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=5.3e-13 Score=122.81 Aligned_cols=104 Identities=19% Similarity=0.131 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-----C--CCEEEEEecHH-HHHHHHHHHHHcCCCCcE--EEEEcccccc------c
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-----G--AAHVYAVECSQ-MANMAKQIVEANGFSNVI--TVLKGKIEEI------E 184 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-----g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i--~~~~~d~~~~------~ 184 (409)
.+..+|||||||+|.++..+++. + ..+++|||+|+ |++.|++.+.....-..+ .+...+++++ .
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 44458999999999988877653 1 23689999999 999999988654332334 4455555443 2
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.++++||+|++..+ +++..++..+++.+.++|+|||.++.
T Consensus 119 ~~~~~fD~I~~~~~---l~~~~d~~~~l~~l~~~LkpgG~l~i 158 (280)
T d1jqea_ 119 KELQKWDFIHMIQM---LYYVKDIPATLKFFHSLLGTNAKMLI 158 (280)
T ss_dssp SSCCCEEEEEEESC---GGGCSCHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCCceeEEEEccc---eecCCCHHHHHHHHHhhCCCCCEEEE
Confidence 45689999999654 55556788999999999999998874
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=1.5e-12 Score=115.58 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=83.0
Q ss_pred ccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCce
Q 015306 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKV 190 (409)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 190 (409)
...+.||.+|||+|||+|.++..+++. | ..+|+|+|+++ +++.++++++..+ ++..+..|..... .....+
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGGTTTCCCE
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCcccccccccce
Confidence 356889999999999999999999994 4 56999999999 9999999876543 3777888775543 334789
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+++. .+......++..+.++|||||.++.
T Consensus 145 D~i~~d~-----~~~~~~~~~l~~~~~~LkpgG~lvi 176 (227)
T d1g8aa_ 145 DVIFEDV-----AQPTQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp EEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEc-----cccchHHHHHHHHHHhcccCCeEEE
Confidence 9998753 2335677889999999999999874
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.33 E-value=2.7e-12 Score=111.13 Aligned_cols=71 Identities=25% Similarity=0.248 Sum_probs=63.1
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEec
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~ 197 (409)
....|++|||+|||+|.+++.++..|+.+|+|+|+++ +++.|++++. ++.++++|+.+++ ++||+|++++
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l~---~~fD~Vi~NP 115 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMNP 115 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEECC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhcC---CcceEEEeCc
Confidence 4567999999999999999999999998999999999 9999998753 3789999998764 7899999997
Q ss_pred c
Q 015306 198 M 198 (409)
Q Consensus 198 ~ 198 (409)
+
T Consensus 116 P 116 (197)
T d1ne2a_ 116 P 116 (197)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.31 E-value=1.1e-11 Score=108.18 Aligned_cols=76 Identities=30% Similarity=0.338 Sum_probs=67.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEe
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~ 196 (409)
.....|++|||+|||+|.+++.++..|+.+|+|+|+++ +++.|++++..++. +.+++.+|+..+. ++||+|+++
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~~---~~fD~Vi~n 116 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMN 116 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEEC
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhhC---CcCcEEEEc
Confidence 45568899999999999999999999988999999999 99999999988775 4889999987763 789999999
Q ss_pred cc
Q 015306 197 WM 198 (409)
Q Consensus 197 ~~ 198 (409)
++
T Consensus 117 PP 118 (201)
T d1wy7a1 117 PP 118 (201)
T ss_dssp CC
T ss_pred Cc
Confidence 85
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=6.1e-12 Score=120.39 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=83.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcC-------CC-CcEEE-EEc
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG-------FS-NVITV-LKG 178 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~-------~~-~~i~~-~~~ 178 (409)
+...+.+...+.++.+|||||||+|.+++.+|+ .|+++|+|||+++ +++.|+++....+ .. ..+.+ +.+
T Consensus 204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 344455557789999999999999999999987 6888999999999 9999999887532 11 11333 344
Q ss_pred ccccccC---CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 179 KIEEIEL---PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 179 d~~~~~~---~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+..+.+. .-..+|+|+++. ..+.+.+...+.++.+.|||||+||..
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn----~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNN----FLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECC----TTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred chhhccccccccccceEEEEec----ccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 4433221 124688998753 223467788899999999999998853
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.29 E-value=7.7e-12 Score=109.89 Aligned_cols=101 Identities=21% Similarity=0.216 Sum_probs=82.2
Q ss_pred HhccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015306 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~Dv 192 (409)
.+.+.+.++.+|||||||+|..+..+++. | .+|+++|.++ +++.|++++...++. ++.++++|........++||.
T Consensus 71 l~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd~~~g~~~~~pfD~ 148 (215)
T d1jg1a_ 71 LEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPPKAPYDV 148 (215)
T ss_dssp HHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEE
T ss_pred HHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECccccCCcccCccee
Confidence 33456889999999999999999999984 5 4799999999 999999999999985 499999999887666689999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|++... +.. .+.. +...|+|||+++
T Consensus 149 Iiv~~a---~~~--ip~~----l~~qL~~gGrLv 173 (215)
T d1jg1a_ 149 IIVTAG---APK--IPEP----LIEQLKIGGKLI 173 (215)
T ss_dssp EEECSB---BSS--CCHH----HHHTEEEEEEEE
T ss_pred EEeecc---ccc--CCHH----HHHhcCCCCEEE
Confidence 998532 221 2222 346799999987
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=5.1e-12 Score=115.11 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=79.4
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC--------------------------
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-------------------------- 170 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-------------------------- 170 (409)
.....|.+|||||||+|.+++..+..+..+|+|+|+|+ |++.+++.+...+..
T Consensus 50 ~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 50 TGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp TSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 34567899999999999888766654466999999999 999999877543211
Q ss_pred ---CcEEEEEccccccc------CCCCceeEEEEeccccccc-ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 171 ---NVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLL-FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 171 ---~~i~~~~~d~~~~~------~~~~~~DvVvs~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
....++.+|+.... .+.++||+|++..+.+++. ....+..+++.+.++|||||.+|.
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~ 196 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 196 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 01234445554322 2346899999976544443 334678999999999999999884
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.17 E-value=4.3e-11 Score=102.72 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEccccccc---CCCCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIE---LPVTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~---~~~~~~DvVvs 195 (409)
..+.+|||+.||||.+++.++.+|+.+|+.||.+. +++.++++++..+..+ ...++..|+.+.. ....+||+|++
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 47789999999999999999999999999999999 9999999999988754 5777888776543 22457999999
Q ss_pred ecccccccChhHHHHHHHHHH--hcccCCeEEEcc
Q 015306 196 EWMGYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (409)
+|+ |.. .....++..+. .+|+++|.++.+
T Consensus 122 DPP-Y~~---~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 122 DPP-FHF---NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CCC-SSS---CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred chh-Hhh---hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 985 322 34445555553 589999999864
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=4.7e-11 Score=104.96 Aligned_cols=104 Identities=20% Similarity=0.383 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D 191 (409)
.++++|||+|||+|..++.+|++ + ..+|+++|.++ +++.|++++...|+.++|+++.+|..+.- ...++||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 46689999999999999999984 2 46999999999 99999999999999999999999998752 2346899
Q ss_pred EEEEecccccccChhH-HHHHHHHHHhcccCCeEEEccC
Q 015306 192 IIISEWMGYFLLFENM-LNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 192 vVvs~~~~~~l~~~~~-~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+|+.+.- +... ....+....++|+|||+++...
T Consensus 135 ~ifiD~~-----~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 135 MVFLDHW-----KDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eeeeccc-----ccccccHHHHHHHhCccCCCcEEEEeC
Confidence 9997521 1111 2233555668999999988654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.16 E-value=4.5e-11 Score=105.66 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=76.6
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc-C------CCEEEEEecHH-HHHHHHHHHHHc-----CCCCcEEEEEcccccccC
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA-G------AAHVYAVECSQ-MANMAKQIVEAN-----GFSNVITVLKGKIEEIEL 185 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~-g------~~~V~~vD~s~-~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~ 185 (409)
.+.++.+|||||||+|.++..+++. | ..+|+++|.++ +++.|++++... ++ .++.++.+|..+...
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~-~nv~~~~~d~~~~~~ 155 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYP 155 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc-cEEEEEecccccccc
Confidence 5689999999999999999888884 2 23899999999 999999886543 23 359999999988766
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+.++||.|++... +.. .+ ..+.+.|||||+++
T Consensus 156 ~~~~fD~Iiv~~a---~~~--~p----~~l~~~Lk~gG~lV 187 (223)
T d1r18a_ 156 PNAPYNAIHVGAA---APD--TP----TELINQLASGGRLI 187 (223)
T ss_dssp GGCSEEEEEECSC---BSS--CC----HHHHHTEEEEEEEE
T ss_pred cccceeeEEEEee---chh--ch----HHHHHhcCCCcEEE
Confidence 6689999998543 221 11 23457899999986
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.3e-10 Score=104.57 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC------CCCceeEE
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL------PVTKVDII 193 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~DvV 193 (409)
+..+|||||||+|.+++.++. .+..+|+|+|+++ +++.|+++++.+++.+++.+++.+.....+ ..++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 446999999999999998888 4566999999999 999999999999999999999877654322 24689999
Q ss_pred EEecc
Q 015306 194 ISEWM 198 (409)
Q Consensus 194 vs~~~ 198 (409)
+|+++
T Consensus 141 vsNPP 145 (250)
T d2h00a1 141 MCNPP 145 (250)
T ss_dssp EECCC
T ss_pred EecCc
Confidence 99985
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.6e-10 Score=101.73 Aligned_cols=113 Identities=16% Similarity=0.091 Sum_probs=90.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
.+...+.+ ..+.++|||||||+|..++.+|+. + ..+|+++|.++ ..+.|++++...|+.++++++.+|+.+..
T Consensus 49 ~lL~~L~~---~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~ 125 (219)
T d2avda1 49 QLLANLAR---LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLD 125 (219)
T ss_dssp HHHHHHHH---HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHHH---ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcch
Confidence 44444443 357789999999999999999984 2 46999999999 99999999999999999999999986642
Q ss_pred -----CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 185 -----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 185 -----~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
...++||+|+.+. ........++.+.++|+|||+++....
T Consensus 126 ~~~~~~~~~~fD~ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 126 ELLAAGEAGTFDVAVVDA------DKENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp HHHHTTCTTCEEEEEECS------CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred hhhhhcccCCccEEEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 1247899999753 123445667788899999999986543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.00 E-value=8.8e-10 Score=94.80 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=84.8
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCce
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (409)
....++.++||++||+|..+..+++ .+..+|+|+|.++ +++.|++++...+ +++.++++++.++. +..++|
T Consensus 19 l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~~~~~v 96 (192)
T d1m6ya2 19 LKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKV 96 (192)
T ss_dssp HCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred hCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHcCCCCc
Confidence 4567899999999999999999988 4667999999999 9999999887654 67999999988754 335799
Q ss_pred eEEEEecccccc-------cChhHHHHHHHHHHhcccCCeEEE
Q 015306 191 DIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 191 DvVvs~~~~~~l-------~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
|.|+.+. |..- ..-......+..+.++|+|||.++
T Consensus 97 dgIl~Dl-GvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ 138 (192)
T d1m6ya2 97 DGILMDL-GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIV 138 (192)
T ss_dssp EEEEEEC-SCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEE
T ss_pred ceeeecc-chhHhhhhhhhccchhHHHHHHHHHHhcCCCCeee
Confidence 9999863 2110 122345677888899999999987
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=1.3e-09 Score=94.69 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
.++.+|+|+|||.|.-++.+|- .+..+|+.+|.+. -+...++.....++.+ +++++.+++++... .+||+|+|..+
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~-~~fD~V~sRA~ 141 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPSE-PPFDGVISRAF 141 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCCC-SCEEEEECSCS
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhhccc-cccceehhhhh
Confidence 4567999999999999999998 5677999999999 9999999999999964 99999999987543 78999999765
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..+..++.-+..+++++|.++...
T Consensus 142 -------~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 -------ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -------SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -------cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 456788899999999999988543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.98 E-value=4.8e-10 Score=99.05 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-----CCCce
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-----PVTKV 190 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~~~~~ 190 (409)
.+.++|||||+++|..++.+|+. + ..+|+++|.++ .++.|++++...|+.++|+++.+++.+.- + ..++|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 46789999999999999999983 3 56999999999 99999999999999999999999997752 1 23689
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
|+|+.+. ........++.+.++|+|||++|....
T Consensus 138 D~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 138 DFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp SEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred eEEEecc------chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 9999753 123455777788899999999986543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.85 E-value=2.2e-09 Score=97.78 Aligned_cols=107 Identities=19% Similarity=0.134 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc---------CCCCcEEEEEcccccccCCCCce
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---------GFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~---------~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
.++++||.||+|.|..+..+++.+..+|++||+++ +++.|++.+..+ .-..+++++.+|+..+.-..++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 56789999999999999998887778999999999 999999876432 23468999999998764345789
Q ss_pred eEEEEecccccccChhH--HHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENM--LNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~--~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|+.+.....- .... -..+++.+++.|+|||+++.+
T Consensus 151 DvIi~D~~~~~~-~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 151 DVIIADSTDPVG-PAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEEeCCCCCC-CcccccCHHHHHhhHhhcCCCceEEEe
Confidence 999997643211 1111 157889999999999998843
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.82 E-value=8.2e-09 Score=91.49 Aligned_cols=89 Identities=18% Similarity=0.281 Sum_probs=72.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 109 ~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
...+.|.+.....++.+|||||||+|.++..+++.+ ++|+|||+++ +++.++++.... ++++++++|+.+++++.
T Consensus 8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhccccc
Confidence 344556666777899999999999999999999985 4999999999 999998876443 46999999999988775
Q ss_pred CceeEEEEecccccc
Q 015306 188 TKVDIIISEWMGYFL 202 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l 202 (409)
.....||++. .|.+
T Consensus 84 ~~~~~vv~NL-PYnI 97 (235)
T d1qama_ 84 NQSYKIFGNI-PYNI 97 (235)
T ss_dssp SCCCEEEEEC-CGGG
T ss_pred cccceeeeee-hhhh
Confidence 5556788886 4444
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.81 E-value=1.7e-08 Score=89.22 Aligned_cols=101 Identities=21% Similarity=0.198 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIIS 195 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~DvVvs 195 (409)
..+.+|+|||+|.|.-++.+|- .+..+|+.+|.+. -+...+......++.+ +.+++..++++... .++||+|+|
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccccccccceEEEE
Confidence 3567999999999999999998 6788999999999 9999999999999965 99999999887532 368999999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..+ ..+..++.-+..++++||.++...
T Consensus 148 RAv-------a~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 148 RAV-------ARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp ECC-------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hhh-------hCHHHHHHHHhhhcccCCEEEEEC
Confidence 876 567788999999999999988543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=3.1e-08 Score=93.55 Aligned_cols=93 Identities=22% Similarity=0.168 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015306 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (409)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (409)
.+.+.+.+.+.....++.+|||+.||+|.+++.+|+. +++|+|+|.++ +++.|++++..|++.+ ++++.++.++..
T Consensus 197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~~~~ 274 (358)
T d1uwva2 197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEEDVT 274 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSCCS
T ss_pred hhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhccccc-ceeeecchhhhhh
Confidence 4555566665566778899999999999999999987 56999999999 9999999999999965 999999987753
Q ss_pred ---CCCCceeEEEEeccccc
Q 015306 185 ---LPVTKVDIIISEWMGYF 201 (409)
Q Consensus 185 ---~~~~~~DvVvs~~~~~~ 201 (409)
....++|+||.++.-.+
T Consensus 275 ~~~~~~~~~d~vilDPPR~G 294 (358)
T d1uwva2 275 KQPWAKNGFDKVLLDPARAG 294 (358)
T ss_dssp SSGGGTTCCSEEEECCCTTC
T ss_pred hhhhhhccCceEEeCCCCcc
Confidence 12467999999986544
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.72 E-value=1e-08 Score=94.76 Aligned_cols=108 Identities=15% Similarity=0.061 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc--C--CCCcEEEEEccccccc-CCCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--G--FSNVITVLKGKIEEIE-LPVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~--~--~~~~i~~~~~d~~~~~-~~~~~~DvV 193 (409)
...++||.||.|.|..+..+++. +..+|++||+++ +++.|++.+... + -+.+++++.+|+.+.- -..++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 45689999999999999999885 577999999999 999999987532 1 1367999999998864 224789999
Q ss_pred EEecccccccCh--h--HHHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFE--N--MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~--~--~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+++......... . .-..+++.+++.|+|||+++..
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 987643222111 1 1257889999999999999854
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=1e-08 Score=93.70 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEcccccccC-CCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIEL-PVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~-~~~~~DvVv 194 (409)
...++||-||.|.|..+..+++. +..+|++||+++ +++.|++.+..+. + +.+++++.+|+..+-- ..++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 45689999999999999999985 577999999999 9999999876432 2 3689999999988642 247899999
Q ss_pred EecccccccChh--HHHHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++.......... .-..+++.+++.|+|||+++..
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 976432111111 1257889999999999999854
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.69 E-value=3.2e-08 Score=92.28 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=80.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc------CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (409)
....+.......++.+|||.|||+|.+...+.+. ...+++|+|+++ ++..|+.++...+.. ..+.++|...
T Consensus 105 m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--~~~~~~d~~~ 182 (328)
T d2f8la1 105 VAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLHQDGLA 182 (328)
T ss_dssp HHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCTTS
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--hhhhcccccc
Confidence 3334443344567789999999999998888652 123799999999 999999998877754 5677777655
Q ss_pred ccCCCCceeEEEEecccccccCh---------------hHHHHHHHHHHhcccCCeEEE
Q 015306 183 IELPVTKVDIIISEWMGYFLLFE---------------NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 183 ~~~~~~~~DvVvs~~~~~~l~~~---------------~~~~~~l~~~~~~LkpgG~li 226 (409)
... ..+||+|+++|+....... .....++..+.++|+|||+++
T Consensus 183 ~~~-~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 240 (328)
T d2f8la1 183 NLL-VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 240 (328)
T ss_dssp CCC-CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred ccc-cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence 433 4789999999852211110 012246788889999999865
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.67 E-value=9.5e-08 Score=85.04 Aligned_cols=106 Identities=15% Similarity=0.056 Sum_probs=78.3
Q ss_pred HHHhccC-CCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015306 113 VIYQNKF-LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (409)
Q Consensus 113 ~l~~~~~-~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (409)
.+.+... .....+|||||||+|.++..+++ .+..+++..|..+.++ ..+..++++++.+|+.+. .| ..
T Consensus 71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~ri~~~~gd~~~~-~p--~~ 140 (244)
T d1fp1d2 71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE-------NAPPLSGIEHVGGDMFAS-VP--QG 140 (244)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCCTTEEEEECCTTTC-CC--CE
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhh-------ccCCCCCeEEecCCcccc-cc--cc
Confidence 3343333 45568999999999999999998 6777999999876432 344457899999999753 33 56
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
|+++...+.+.. .......+++.+++.|+|||+++...
T Consensus 141 D~~~l~~vLh~~-~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 141 DAMILKAVCHNW-SDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp EEEEEESSGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEehhhhhC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999987654443 23445688999999999999988543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.67 E-value=1.1e-07 Score=81.54 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCCCCh----HHHHHHHcC-----CCEEEEEecHH-HHHHHHHHH--------------H----HcCCC--
Q 015306 121 FKDKVVLDVGAGTGI----LSLFCAKAG-----AAHVYAVECSQ-MANMAKQIV--------------E----ANGFS-- 170 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~----l~~~la~~g-----~~~V~~vD~s~-~~~~a~~~~--------------~----~~~~~-- 170 (409)
.+..+|+++|||+|. +++.+.+.+ .-+++|+|+++ +++.|++-. . ..+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 455699999999995 555555531 12799999999 999887421 0 10100
Q ss_pred ----------CcEEEEEccccccc-CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccC
Q 015306 171 ----------NVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 171 ----------~~i~~~~~d~~~~~-~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
..+.+...+..... .+.++||+|+|..+..++ .......+++.+.+.|+|||.++...
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-CHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 12344444444332 234789999997554443 34566789999999999999988553
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.62 E-value=5e-08 Score=88.99 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC---CCCcEEEEEccccccc--CCCCceeEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG---FSNVITVLKGKIEEIE--LPVTKVDII 193 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~~~~DvV 193 (409)
...++||-||.|.|..+..+.+. +..+|++||+++ +++.+++.+..+. -+.+++++.+|....- ...++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 45679999999999999999995 567999999999 9999999775322 2478999999987764 334689999
Q ss_pred EEecccccccChh-HHHHHHHHHHhcccCCeEEEccC
Q 015306 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 194 vs~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
+.+.......... .-..+++.+++.|+|||+++.+.
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 9976432211111 12578899999999999998654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.61 E-value=2.3e-09 Score=95.63 Aligned_cols=94 Identities=21% Similarity=0.319 Sum_probs=73.7
Q ss_pred hhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc
Q 015306 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178 (409)
Q Consensus 100 ~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~ 178 (409)
+|.|..-. +.|.+.....++.+|||||||+|.++..+++.+ ++|+|||+++ +++.+++.+.. ..+++++++
T Consensus 11 FL~d~~ii----~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~ 82 (245)
T d1yuba_ 11 FLTSEKVL----NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQ 82 (245)
T ss_dssp BCCCTTTH----HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT---CSEEEECCS
T ss_pred ccCCHHHH----HHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhh---ccchhhhhh
Confidence 45554333 334444667788999999999999999999985 4999999999 99888766532 256999999
Q ss_pred ccccccCCCCceeEEEEecccccc
Q 015306 179 KIEEIELPVTKVDIIISEWMGYFL 202 (409)
Q Consensus 179 d~~~~~~~~~~~DvVvs~~~~~~l 202 (409)
|+.+++++....+.||++. .|.+
T Consensus 83 D~l~~~~~~~~~~~vv~NL-PY~I 105 (245)
T d1yuba_ 83 DILQFQFPNKQRYKIVGNI-PYHL 105 (245)
T ss_dssp CCTTTTCCCSSEEEEEEEC-CSSS
T ss_pred hhhccccccceeeeEeeee-ehhh
Confidence 9999998877888899886 4544
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=4.3e-08 Score=89.16 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC---CCCcEEEEEccccccc-CCCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG---FSNVITVLKGKIEEIE-LPVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~-~~~~~~DvVv 194 (409)
...++||-||.|.|..+..+.+. +..+|+.||+++ +++.|++.+..+. -+.+++++.+|+...- ...++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 45689999999999999999995 578999999999 9999999875421 2468999999988764 2347899999
Q ss_pred EecccccccChh-HHHHHHHHHHhcccCCeEEEcc
Q 015306 195 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 195 s~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (409)
++.....-.... .-..+++.+++.|+|||+++.+
T Consensus 157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 986432111111 1246788999999999999854
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.3e-07 Score=85.44 Aligned_cols=89 Identities=25% Similarity=0.350 Sum_probs=72.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015306 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (409)
Q Consensus 110 ~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (409)
..+.|.+.....++.+|||||+|+|.++..+++.+. +|++||+++ +++.+++.+......++++++.+|+....++
T Consensus 9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~-- 85 (278)
T d1zq9a1 9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-- 85 (278)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--
T ss_pred HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh--
Confidence 344455556677899999999999999999999864 999999999 9999999887766667899999999887764
Q ss_pred ceeEEEEecccccc
Q 015306 189 KVDIIISEWMGYFL 202 (409)
Q Consensus 189 ~~DvVvs~~~~~~l 202 (409)
..+.||++.. |.+
T Consensus 86 ~~~~vV~NLP-Y~I 98 (278)
T d1zq9a1 86 FFDTCVANLP-YQI 98 (278)
T ss_dssp CCSEEEEECC-GGG
T ss_pred hhhhhhcchH-HHH
Confidence 4678898863 433
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.56 E-value=3.6e-08 Score=90.38 Aligned_cols=109 Identities=19% Similarity=0.150 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCC---CCcEEEEEccccccc-CCCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGF---SNVITVLKGKIEEIE-LPVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~-~~~~~~DvVv 194 (409)
...++||-||.|.|.++..+++. +..+|+.||+++ +++.+++.+..+.- +.+++++.+|...+- ...++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 45679999999999999999995 467999999999 99999998754321 268999999998764 2347899999
Q ss_pred EecccccccChh-HHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
.+.......... .-..+++.+++.|+|||+++.+.
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 975432111111 12577889999999999998543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.56 E-value=5.3e-08 Score=88.12 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEccccccc-CCCCceeEEE
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIII 194 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~DvVv 194 (409)
...++||-||.|.|..+..+.+. +..+|+.||+++ +++.|++.+..+. + +.+++++.+|....- ...++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 45689999999999999999985 678999999999 9999999875421 2 368999999987754 2357899999
Q ss_pred EecccccccChh-HHHHHHHHHHhcccCCeEEEccC
Q 015306 195 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 195 s~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
.+.......... .-..+++.+++.|+|||+++...
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 975432111111 13578889999999999998543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.46 E-value=3.7e-07 Score=84.16 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=89.0
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVv 194 (409)
....+|.+|||++||.|.=+..++.. +...++++|.++ -+..+++++...++.+ +.+...|...+......||.|+
T Consensus 112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~~~~~~~~~~fD~IL 190 (313)
T d1ixka_ 112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELNVEFDKIL 190 (313)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGCCCEEEEE
T ss_pred ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-cccccccccccccccccccEEE
Confidence 34678999999999999998888873 355899999999 9999999999999865 7788888877765568899999
Q ss_pred Eeccccccc------------Chh-------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 195 SEWMGYFLL------------FEN-------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 195 s~~~~~~l~------------~~~-------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
.+...+... ... ....++....++|||||.+|-+++++
T Consensus 191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 975433221 011 12466777889999999999777663
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.46 E-value=1.6e-07 Score=88.67 Aligned_cols=99 Identities=20% Similarity=0.118 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCC--------------cEEEEEcccccccC
Q 015306 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSN--------------VITVLKGKIEEIEL 185 (409)
Q Consensus 122 ~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~--------------~i~~~~~d~~~~~~ 185 (409)
.+.+|||..||+|..++..+. .|+.+|+++|+|+ +++.+++|++.|+..+ .+.+.+.|+..+..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 678999999999999996655 7888999999999 9999999999998643 46677777655432
Q ss_pred -CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 -PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 -~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
....||+|..++.+ ....+++...+.++.||.+..
T Consensus 125 ~~~~~fDvIDiDPfG-------s~~pfldsAi~a~~~~Gll~v 160 (375)
T d2dula1 125 ERHRYFHFIDLDPFG-------SPMEFLDTALRSAKRRGILGV 160 (375)
T ss_dssp HSTTCEEEEEECCSS-------CCHHHHHHHHHHEEEEEEEEE
T ss_pred hhcCcCCcccCCCCC-------CcHHHHHHHHHHhccCCEEEE
Confidence 23679999998753 234577777788999999874
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=3.6e-07 Score=83.14 Aligned_cols=114 Identities=14% Similarity=0.031 Sum_probs=84.6
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEE
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 194 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~DvVv 194 (409)
....++.+|||+++|.|.=+..++..+ ...|+|+|.++ -+..+++++...|+.+ +.+...|..... ...+.||.|+
T Consensus 98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~~~~~~~~fd~IL 176 (284)
T d1sqga2 98 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQWCGEQQFDRIL 176 (284)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHHHHTTCCEEEEE
T ss_pred cCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccchhcccccccEEE
Confidence 346789999999999999999998853 46899999999 9999999999999865 545544443222 2247899999
Q ss_pred Eeccccccc----Ch--------h-------HHHHHHHHHHhcccCCeEEEccCCce
Q 015306 195 SEWMGYFLL----FE--------N-------MLNTVLYARDKWLVDDGIVLPDKASL 232 (409)
Q Consensus 195 s~~~~~~l~----~~--------~-------~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (409)
.+...+... ++ . ....++....++|||||+++-+++++
T Consensus 177 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 177 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 986433221 11 1 12477788889999999999777663
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.44 E-value=4.7e-07 Score=80.46 Aligned_cols=96 Identities=17% Similarity=0.143 Sum_probs=73.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
....+|||||||+|.++..+++ .+..+++..|..+.++ ..+..++|+++.+|+.+.. ..+|+++...+.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~rv~~~~gD~f~~~---p~aD~~~l~~vL 148 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVE-------NLSGSNNLTYVGGDMFTSI---PNADAVLLKYIL 148 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCBTTEEEEECCTTTCC---CCCSEEEEESCG
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHH-------hCcccCceEEEecCcccCC---CCCcEEEEEeec
Confidence 3447899999999999999998 5677999999976443 2345688999999997632 468999987654
Q ss_pred ccccChhHHHHHHHHHHhcccCC---eEEEc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDD---GIVLP 227 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lkpg---G~lip 227 (409)
+.. .......+++.+++.|+|| |+++.
T Consensus 149 Hdw-~d~~~~~iL~~~~~al~pgg~~~~lli 178 (244)
T d1fp2a2 149 HNW-TDKDCLRILKKCKEAVTNDGKRGKVTI 178 (244)
T ss_dssp GGS-CHHHHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred ccC-ChHHHHHHHHHHHHHcCcccCCcEEEE
Confidence 433 2334468899999999998 66654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=1.2e-06 Score=73.91 Aligned_cols=98 Identities=18% Similarity=0.251 Sum_probs=71.2
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHH-c-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CCC
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPV 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~-~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 187 (409)
.-+.++.+||||||++|.++..+++ . ....|+++|..++ ..+ +.+.++++|+.+.. ...
T Consensus 18 ~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------~~i-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T d1ej0a_ 18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------DPI-VGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------CCC-TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred CccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------ccc-CCceEeecccccchhhhhhhhhccC
Confidence 4467889999999999999999987 3 3578999999772 123 34899999997643 234
Q ss_pred CceeEEEEecccccccChh--------HHHHHHHHHHhcccCCeEEE
Q 015306 188 TKVDIIISEWMGYFLLFEN--------MLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~li 226 (409)
.++|+|+|++....-.+.. .....+.-+.++|++||.+|
T Consensus 87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV 133 (180)
T d1ej0a_ 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFV 133 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEE
Confidence 7899999986544322211 12344555679999999998
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.40 E-value=3.9e-07 Score=79.42 Aligned_cols=105 Identities=12% Similarity=0.035 Sum_probs=73.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (409)
.+.+.......++.+|||.|||+|.+...+.+ . ....++|+|+++ .+..+ ....++++|.......
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----------~~~~~~~~~~~~~~~~- 76 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPG- 76 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCS-
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----------ccceeeeeehhccccc-
Confidence 34445556667889999999999998888776 3 356899999999 65332 3367788888776544
Q ss_pred CceeEEEEecccccccCh--------------------------hHHHHHHHHHHhcccCCeEEE
Q 015306 188 TKVDIIISEWMGYFLLFE--------------------------NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~--------------------------~~~~~~l~~~~~~LkpgG~li 226 (409)
.+||+|++++........ .....++....++|+|||++.
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~ 141 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLV 141 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEE
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceE
Confidence 899999999742211100 012345667778999999975
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=2.2e-06 Score=78.15 Aligned_cols=111 Identities=12% Similarity=0.007 Sum_probs=82.1
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeE
Q 015306 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDI 192 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~Dv 192 (409)
...+|.+|||++||.|.-+..++.. +..+|+|+|+++ -+..+++++...|+.+ +.+...|...+... .++||.
T Consensus 91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~~~~~~fD~ 169 (293)
T d2b9ea1 91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHEVHY 169 (293)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhcccccccceeeE
Confidence 4578999999999999988888873 466899999999 9999999999999965 99999998876532 267999
Q ss_pred EEEecccccccC----h--------h-----HH----HHHHHHHHhcccCCeEEEccCCc
Q 015306 193 IISEWMGYFLLF----E--------N-----ML----NTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 193 Vvs~~~~~~l~~----~--------~-----~~----~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
|+.++..+.... . . .+ ..++.... .|+|||.+|-++++
T Consensus 170 VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS 228 (293)
T d2b9ea1 170 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS 228 (293)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred EeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence 999864332110 0 0 01 23344444 47999999976665
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.28 E-value=1.4e-06 Score=77.33 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~ 199 (409)
....+|||||||+|.++..+++ .+..+++.+|..+.++ .....++++++.+|+.+. .| ..|+++...+.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~r~~~~~~d~~~~-~P--~ad~~~l~~vl 149 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIE-------DAPSYPGVEHVGGDMFVS-IP--KADAVFMKWIC 149 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTT-------TCCCCTTEEEEECCTTTC-CC--CCSCEECSSSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhh-------hcccCCceEEeccccccc-CC--CcceEEEEEEe
Confidence 3357999999999999999999 5677999999977432 233447899999999763 33 35666654332
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.. .......+++.+++.|+|||+++..
T Consensus 150 h~~-~d~~~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 150 HDW-SDEHCLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp TTS-CHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred ecC-CHHHHHHHHHHHHHhcCCCceEEEE
Confidence 222 3345678999999999999987743
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=4.9e-07 Score=80.49 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=64.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC---
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV--- 187 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--- 187 (409)
+.|.+.....++..|||||||+|.++..+++.+ ++|++||+++ +++.+++.... .++++++.+|+..+.++.
T Consensus 11 ~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~~~~~~~~ 86 (252)
T d1qyra_ 11 DSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhhccccccc
Confidence 334444556788999999999999999999985 5899999999 99988774432 256999999999876431
Q ss_pred --CceeEEEEecccccc
Q 015306 188 --TKVDIIISEWMGYFL 202 (409)
Q Consensus 188 --~~~DvVvs~~~~~~l 202 (409)
+.--.|+++. .|.+
T Consensus 87 ~~~~~~~vvgNl-PY~I 102 (252)
T d1qyra_ 87 KMGQPLRVFGNL-PYNI 102 (252)
T ss_dssp HHTSCEEEEEEC-CTTT
T ss_pred ccCCCeEEEecc-hHHH
Confidence 2233677775 3433
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.21 E-value=4e-06 Score=70.62 Aligned_cols=103 Identities=20% Similarity=0.214 Sum_probs=78.7
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCcee
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVD 191 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D 191 (409)
....+|..++|..+|.|..+..+.+.+ .+|+|+|.++ ++..|++. ...++.+++.+..++. ...+++|
T Consensus 14 l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~~~~vd 87 (182)
T d1wg8a2 14 LAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALGVERVD 87 (182)
T ss_dssp HTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred cCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcCCCccC
Confidence 446889999999999999999999974 4999999999 99888764 2356999999988764 3347899
Q ss_pred EEEEecccccccC-------hhHHHHHHHHHHhcccCCeEEEc
Q 015306 192 IIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 192 vVvs~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.|+.++ |..... -..+...+.....+|+|||.++.
T Consensus 88 gIl~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~i 129 (182)
T d1wg8a2 88 GILADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVV 129 (182)
T ss_dssp EEEEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEE
Confidence 999874 221110 11334567788899999999773
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.05 E-value=6.4e-06 Score=79.08 Aligned_cols=114 Identities=17% Similarity=0.019 Sum_probs=81.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcC--------------CCEEEEEecHH-HHHHHHHHHHHcCCC-CcEE
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--------------AAHVYAVECSQ-MANMAKQIVEANGFS-NVIT 174 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g--------------~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~ 174 (409)
.+.+.......++.+|+|.+||+|.+...+.++- ...++|+|+++ +...|+.++.-.+.. +...
T Consensus 151 v~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~ 230 (425)
T d2okca1 151 IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 230 (425)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred hHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccce
Confidence 3444444455678899999999999988887631 12599999999 999999988887764 3356
Q ss_pred EEEcccccccCCCCceeEEEEecccccccCh---------------hHHHHHHHHHHhcccCCeEEE
Q 015306 175 VLKGKIEEIELPVTKVDIIISEWMGYFLLFE---------------NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 175 ~~~~d~~~~~~~~~~~DvVvs~~~~~~l~~~---------------~~~~~~l~~~~~~LkpgG~li 226 (409)
+...|...... ..+||+|+++|+. ..... ..-..++..+..+|++||++.
T Consensus 231 i~~~d~l~~~~-~~~fD~Ii~NPPf-g~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 295 (425)
T d2okca1 231 IVCEDSLEKEP-STLVDVILANPPF-GTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA 295 (425)
T ss_dssp EEECCTTTSCC-SSCEEEEEECCCS-SCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred eecCchhhhhc-ccccceEEecCCC-CCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEE
Confidence 77777765543 4789999999753 22110 112357888889999999865
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.96 E-value=1.3e-05 Score=70.63 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=60.3
Q ss_pred CEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC--------CCCcEEEEEcccccccC-CCCceeEE
Q 015306 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG--------FSNVITVLKGKIEEIEL-PVTKVDII 193 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~--------~~~~i~~~~~d~~~~~~-~~~~~DvV 193 (409)
.+|||.-||.|..++.+|..|+ +|++||-++ +....++.+.... +..+++++++|..++-. ..++||+|
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 4899999999999999999986 899999999 8777776554322 12479999999877642 24679999
Q ss_pred EEeccc
Q 015306 194 ISEWMG 199 (409)
Q Consensus 194 vs~~~~ 199 (409)
+.++|.
T Consensus 169 YlDPMF 174 (250)
T d2oyra1 169 YLDPMF 174 (250)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999874
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.94 E-value=1.3e-05 Score=70.18 Aligned_cols=116 Identities=15% Similarity=0.225 Sum_probs=75.8
Q ss_pred hhcChHhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH----cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 015306 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (409)
Q Consensus 100 ~l~d~~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~----~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (409)
+++.......|.+.|.+ .++++|||||++.|..+..++. .+ ..+|+++|+++ ....+.. ..+++
T Consensus 62 ~~k~p~d~~~~~eli~~----~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I 131 (232)
T d2bm8a1 62 MLKDPDTQAVYHDMLWE----LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENI 131 (232)
T ss_dssp CCSCHHHHHHHHHHHHH----HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTE
T ss_pred cccCHHHHHHHHHHHHH----hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccce
Confidence 45555556566666654 3578999999999987776664 22 56999999987 4432221 12569
Q ss_pred EEEEccccccc----CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCC
Q 015306 174 TVLKGKIEEIE----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (409)
Q Consensus 174 ~~~~~d~~~~~----~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (409)
+++++|..+.. +....+|+|+.+.- + ..+..+..+ ....+|++||++|....
T Consensus 132 ~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H--~~~~v~~~~--~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 132 TLHQGDCSDLTTFEHLREMAHPLIFIDNA-H--ANTFNIMKW--AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEEECCSSCSGGGGGGSSSCSSEEEEESS-C--SSHHHHHHH--HHHHTCCTTCEEEECSC
T ss_pred eeeecccccHHHHHHHHhcCCCEEEEcCC-c--chHHHHHHH--HHhcccCcCCEEEEEcC
Confidence 99999987644 22356888887541 1 123333333 34589999999987653
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.74 E-value=2e-05 Score=68.53 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=64.9
Q ss_pred HHhccCCCCCCEEEEEcCCCChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015306 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
|.+...+.++.+|+|||||.|.++..++... ...|.|+++-- ..+. .......++ +.+++...+.... .+.+.+|
T Consensus 58 ~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~-l~~~~~D 134 (257)
T d2p41a1 58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFF-IPPERCD 134 (257)
T ss_dssp HHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTT-SCCCCCS
T ss_pred HHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHh-cCCCcCC
Confidence 3333456778899999999999999999853 34788887731 1000 000011111 3355554433222 3458899
Q ss_pred EEEEecccccccCh---hHHHHHHHHHHhcccCCeEEE
Q 015306 192 IIISEWMGYFLLFE---NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 192 vVvs~~~~~~l~~~---~~~~~~l~~~~~~LkpgG~li 226 (409)
+|+|++..+....+ ...-.+++.+.++|+|||.|+
T Consensus 135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fv 172 (257)
T d2p41a1 135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFC 172 (257)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEE
Confidence 99998632211110 112256777789999999876
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=3.5e-05 Score=75.77 Aligned_cols=115 Identities=13% Similarity=-0.057 Sum_probs=74.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCChHHHHHHHc----C---------------CCEEEEEecHH-HHHHHHHHHHHcCCC
Q 015306 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G---------------AAHVYAVECSQ-MANMAKQIVEANGFS 170 (409)
Q Consensus 111 ~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~----g---------------~~~V~~vD~s~-~~~~a~~~~~~~~~~ 170 (409)
.+.+.......++.+|+|.+||+|.+...+.++ . ...++|+|+++ +...|+-++--.+..
T Consensus 153 v~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~ 232 (524)
T d2ar0a1 153 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 232 (524)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred hHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc
Confidence 334444445567889999999999998877663 1 12589999999 999999888766653
Q ss_pred Cc----EEEEEccccccc-CCCCceeEEEEecccccccCh------------hHHHHHHHHHHhcccCCeEEE
Q 015306 171 NV----ITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFE------------NMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 171 ~~----i~~~~~d~~~~~-~~~~~~DvVvs~~~~~~l~~~------------~~~~~~l~~~~~~LkpgG~li 226 (409)
.. -.+...+..... ....+||+|+++|+. ..... ..--.++..+.+.|+|||++.
T Consensus 233 ~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPf-g~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~a 304 (524)
T d2ar0a1 233 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 304 (524)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCC-TTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccchhhhhhhhhhcccccccceeEEecCCc-cccccccchhhhccccccccHHHHHHHHHhccccCcEE
Confidence 21 122333332211 224689999999743 21110 011247888889999999854
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.37 E-value=9.4e-05 Score=61.90 Aligned_cols=103 Identities=22% Similarity=0.272 Sum_probs=65.7
Q ss_pred HHHHhccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----
Q 015306 112 NVIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---- 184 (409)
Q Consensus 112 ~~l~~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 184 (409)
.++.+.....+|.+||-+|||. |.++..+++ .|+.+|+++|.++ .++.|++. |....+.....+..+..
T Consensus 18 ~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~i~ 93 (182)
T d1vj0a2 18 HAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GADLTLNRRETSVEERRKAIM 93 (182)
T ss_dssp HHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCSEEEETTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cceEEEeccccchHHHHHHHH
Confidence 3455555678899999999985 788888888 6888999999999 88888663 43211111111211110
Q ss_pred --CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 --~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+|+-.. + .+ ..++...++|++||+++.
T Consensus 94 ~~~~~~g~Dvvid~v-G----~~----~~~~~a~~~l~~~G~iv~ 129 (182)
T d1vj0a2 94 DITHGRGADFILEAT-G----DS----RALLEGSELLRRGGFYSV 129 (182)
T ss_dssp HHTTTSCEEEEEECS-S----CT----THHHHHHHHEEEEEEEEE
T ss_pred HhhCCCCceEEeecC-C----ch----hHHHHHHHHhcCCCEEEE
Confidence 1235699988421 1 11 234555588999999863
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.29 E-value=0.00025 Score=60.05 Aligned_cols=102 Identities=22% Similarity=0.118 Sum_probs=67.3
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCC
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVT 188 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~ 188 (409)
....+|.+||.+|||. |.++..+++ .|+.+|+++|.++ .++.|++. |. -.++...-.++. ....
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF---EIADLSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---EEEETTSSSCHHHHHHHHHSSS
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc---cEEEeCCCcCHHHHHHHHhCCC
Confidence 5788999999999998 777888887 6888999999999 88888764 32 122221111110 1235
Q ss_pred ceeEEEEecccc-------cccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGY-------FLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~-------~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+|+++-. ++. ...........++...+.++|||+++.
T Consensus 94 g~D~vid~-vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~ 138 (195)
T d1kola2 94 EVDCAVDA-VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 138 (195)
T ss_dssp CEEEEEEC-CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred CcEEEEEC-ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEE
Confidence 79999842 221 000011124567788899999999873
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.28 E-value=0.00023 Score=65.16 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=58.5
Q ss_pred hhcChHhHHHHHHHHHh--ccCCCCCCEEEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEE
Q 015306 100 MLKDVVRTKSYQNVIYQ--NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175 (409)
Q Consensus 100 ~l~d~~r~~~~~~~l~~--~~~~~~~~~VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~ 175 (409)
++.|..-.+...+.+.- ......+..|||||+|.|.++..+.+. ++++|+++|.++ +++..++.+. .+++++
T Consensus 19 fL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~i 94 (322)
T d1i4wa_ 19 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQI 94 (322)
T ss_dssp CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEE
T ss_pred ccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEE
Confidence 44555444455554421 112235679999999999999999986 467999999999 9999887653 256899
Q ss_pred EEcccccc
Q 015306 176 LKGKIEEI 183 (409)
Q Consensus 176 ~~~d~~~~ 183 (409)
+++|+..+
T Consensus 95 i~~D~l~~ 102 (322)
T d1i4wa_ 95 LKRDPYDW 102 (322)
T ss_dssp ECSCTTCH
T ss_pred EeCchhhc
Confidence 99998754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.22 E-value=0.00066 Score=56.09 Aligned_cols=98 Identities=21% Similarity=0.218 Sum_probs=66.0
Q ss_pred HHhccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C
Q 015306 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L 185 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~ 185 (409)
+.+.....++.+||-+|||. |.++..+++ .|+..|+++|.++ -++.+++. |.. .++..+-.+.. +
T Consensus 20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~ 92 (174)
T d1f8fa2 20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEI 92 (174)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe---EEEeCCCcCHHHHHHHH
Confidence 34445678999999999986 566777777 6888999999999 88888764 432 33433322221 2
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.++.+|+|+-.. .. ...++...++++|+|+++.
T Consensus 93 t~gg~D~vid~~-----G~----~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 93 TDGGVNFALEST-----GS----PEILKQGVDALGILGKIAV 125 (174)
T ss_dssp TTSCEEEEEECS-----CC----HHHHHHHHHTEEEEEEEEE
T ss_pred cCCCCcEEEEcC-----Cc----HHHHHHHHhcccCceEEEE
Confidence 246899998421 11 2344566689999999874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.14 E-value=0.0003 Score=58.32 Aligned_cols=94 Identities=26% Similarity=0.263 Sum_probs=63.9
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCC
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVT 188 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~ 188 (409)
....+|.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++. |.. .++.-.-.++. ....
T Consensus 23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~---~~i~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT---DILNYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS---EEECGGGSCHHHHHHHHTTTS
T ss_pred hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc---ccccccchhHHHHHHHHhhcc
Confidence 5678999999999997 888999999 6888999999999 88888753 332 22322211111 1235
Q ss_pred ceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 189 ~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+|+|+-.. + .. ..++...++|+|+|.++.
T Consensus 96 G~D~vid~~-g----~~----~~~~~a~~~~~~~G~iv~ 125 (174)
T d1jqba2 96 GVDRVIMAG-G----GS----ETLSQAVKMVKPGGIISN 125 (174)
T ss_dssp CEEEEEECS-S----CT----THHHHHHHHEEEEEEEEE
T ss_pred CcceEEEcc-C----CH----HHHHHHHHHHhcCCEEEE
Confidence 699988521 1 11 234555588999999874
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.03 E-value=0.001 Score=55.03 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=66.0
Q ss_pred HhccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-------
Q 015306 115 YQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------- 184 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 184 (409)
.+.....+|.+||-+|||. |.++..+++ .|+..|+++|.++ -++.|++. |.. .++...-.+..
T Consensus 21 ~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 21 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT---DCLNPRELDKPVQDVITE 93 (174)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHHH
T ss_pred HHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC---cccCCccchhhhhhhHhh
Confidence 3446678999999999998 899999999 7888999999999 88877764 432 22222111110
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCC-eEEEc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (409)
...+.+|+++-.. +. +..+....+.|++| |+++.
T Consensus 94 ~~~~G~d~vie~~--------G~-~~~~~~a~~~~~~g~G~~v~ 128 (174)
T d1e3ia2 94 LTAGGVDYSLDCA--------GT-AQTLKAAVDCTVLGWGSCTV 128 (174)
T ss_dssp HHTSCBSEEEESS--------CC-HHHHHHHHHTBCTTTCEEEE
T ss_pred hhcCCCcEEEEec--------cc-chHHHHHHHHhhcCCeEEEe
Confidence 1246799998421 11 23455666889886 88874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.00 E-value=0.0013 Score=54.25 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=62.0
Q ss_pred HHhccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------
Q 015306 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------ 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------ 184 (409)
+.+.....+|.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++. |.. .++...-.+..
T Consensus 19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga~---~~i~~~~~d~~~~~~~~ 91 (174)
T d1p0fa2 19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT---ECLNPKDYDKPIYEVIC 91 (174)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CCc---EEEcCCCchhHHHHHHH
Confidence 33445689999999999986 566777777 7888999999999 88888763 432 22321111110
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
...+.+|+|+-.. .....+...+..+++++|.++
T Consensus 92 ~~~~~G~d~vid~~--------g~~~~~~~~~~~~~~~~G~~v 126 (174)
T d1p0fa2 92 EKTNGGVDYAVECA--------GRIETMMNALQSTYCGSGVTV 126 (174)
T ss_dssp HHTTSCBSEEEECS--------CCHHHHHHHHHTBCTTTCEEE
T ss_pred HhcCCCCcEEEEcC--------CCchHHHHHHHHHHHhcCceE
Confidence 1236799998532 122333344444556668876
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.00059 Score=56.17 Aligned_cols=94 Identities=27% Similarity=0.197 Sum_probs=62.9
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc---c-----CC
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---E-----LP 186 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~-----~~ 186 (409)
....++.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++. |.. .++..+-.+. . ..
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARKVEGQL 94 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc---ccccccccccccccccccccC
Confidence 4568899999999987 677777777 6888999999999 88888764 432 1222221111 0 01
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+|+|+-.. .. +..++...+++++||+++.
T Consensus 95 g~g~Dvvid~~-----G~----~~~~~~a~~~~~~gG~iv~ 126 (171)
T d1pl8a2 95 GCKPEVTIECT-----GA----EASIQAGIYATRSGGTLVL 126 (171)
T ss_dssp TSCCSEEEECS-----CC----HHHHHHHHHHSCTTCEEEE
T ss_pred CCCceEEEecc-----CC----chhHHHHHHHhcCCCEEEE
Confidence 35799988521 11 2345666689999999874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00086 Score=55.29 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=63.0
Q ss_pred HHhccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCC
Q 015306 114 IYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELP 186 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~ 186 (409)
|.....+.+|.+||-.|+ |.|.+++.+++ .|+ +|++++.++ ..+.+++ .|....+.....|..+. ...
T Consensus 20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t~ 94 (174)
T d1yb5a2 20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYVG 94 (174)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHHC
T ss_pred HHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc----cCcccccccccccHHHHhhhhhc
Confidence 444456789999999996 35788888888 566 899998888 7777664 45432121111122111 022
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
...+|+|+... + ...+....+.|+|+|+++.
T Consensus 95 ~~g~d~v~d~~--------g--~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 95 EKGIDIIIEML--------A--NVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp TTCEEEEEESC--------H--HHHHHHHHHHEEEEEEEEE
T ss_pred cCCceEEeecc--------c--HHHHHHHHhccCCCCEEEE
Confidence 46799998632 1 1235556688999999884
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.90 E-value=0.002 Score=53.15 Aligned_cols=99 Identities=13% Similarity=0.153 Sum_probs=63.5
Q ss_pred HHhccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ccccc-----c
Q 015306 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEI-----E 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~-----~ 184 (409)
+.+.....+|.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++.- .. .++.. +.... .
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G----A~---~~in~~~~~~~~~~~~~ 93 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG----AT---ECISPKDSTKPISEVLS 93 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT----CS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC----Cc---EEECccccchHHHHHHH
Confidence 34445678999999999986 566777777 6888999999999 999988763 22 22221 11110 0
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+++-.. .....+...+..+++++|+++.
T Consensus 94 ~~~g~G~d~vi~~~--------g~~~~~~~a~~~~~~~~G~~v~ 129 (176)
T d1d1ta2 94 EMTGNNVGYTFEVI--------GHLETMIDALASCHMNYGTSVV 129 (176)
T ss_dssp HHHTSCCCEEEECS--------CCHHHHHHHHTTSCTTTCEEEE
T ss_pred HhccccceEEEEeC--------CchHHHHHHHHHhhcCCeEEEE
Confidence 1236799887522 2233444555556677688763
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.79 E-value=0.0025 Score=55.51 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=75.9
Q ss_pred cCCCCCCEEEEEcCCCChHHHHHHHcCC-----------------------------------------CEEEEEecHH-
Q 015306 118 KFLFKDKVVLDVGAGTGILSLFCAKAGA-----------------------------------------AHVYAVECSQ- 155 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~l~~~la~~g~-----------------------------------------~~V~~vD~s~- 155 (409)
.....+..++|.-||+|.+.+.+|.... ..++|.|.++
T Consensus 46 ~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ 125 (249)
T d1o9ga_ 46 LPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLE 125 (249)
T ss_dssp SSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred hcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHH
Confidence 3445566899999999999888876310 1467899999
Q ss_pred HHHHH---HHHHHHcCCCCcEEEEEcccccccC-----CCCceeEEEEeccccc--ccCh-----hHHHHHHHHHHhccc
Q 015306 156 MANMA---KQIVEANGFSNVITVLKGKIEEIEL-----PVTKVDIIISEWMGYF--LLFE-----NMLNTVLYARDKWLV 220 (409)
Q Consensus 156 ~~~~a---~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~~DvVvs~~~~~~--l~~~-----~~~~~~l~~~~~~Lk 220 (409)
+++.| ++++...|+.+.|.+.+.|+.+... +....++||+|+. |. +..+ ..+..+...+.+.|.
T Consensus 126 ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP-YGERl~~~~~~~~~~~~~~~~~l~~~~p 204 (249)
T d1o9ga_ 126 AAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP-YGERTHWEGQVPGQPVAGLLRSLASALP 204 (249)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC-GGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCC-ccccccccccchHHHHHHHHHHHHccCC
Confidence 88888 5688999999999999999876441 2366899999973 43 2211 235566666777775
Q ss_pred CCeEEE
Q 015306 221 DDGIVL 226 (409)
Q Consensus 221 pgG~li 226 (409)
....++
T Consensus 205 ~~s~~~ 210 (249)
T d1o9ga_ 205 AHAVIA 210 (249)
T ss_dssp TTCEEE
T ss_pred CCcEEE
Confidence 444444
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.65 E-value=0.00046 Score=56.28 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecc
Q 015306 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (409)
Q Consensus 122 ~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~ 198 (409)
++.+|+-||+|. |..+...|. .|+ +|+++|.++ .++..+..... .++....+-..+.-.-..+|+||...+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aal 104 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVL 104 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEeee
Confidence 568999999997 677777777 565 999999999 88887776543 356665555444322257999998643
Q ss_pred cccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
......+.-+-+++.+.+|||.+++
T Consensus 105 ---ipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 105 ---VPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp ---CTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred ---cCCcccCeeecHHHHhhcCCCcEEE
Confidence 2222222223355668899999988
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.62 E-value=0.00029 Score=57.97 Aligned_cols=95 Identities=20% Similarity=0.156 Sum_probs=61.0
Q ss_pred cCCCCCCEEEEEcCC-CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ccccc-cCCCCceeE
Q 015306 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEI-ELPVTKVDI 192 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~-~~~~~~~Dv 192 (409)
....+|.+||-+|+| .|.++..+++ .|+ +|+++|.++ .++.|++. |.+ .++.. +-.+. ....+.+|+
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~~d~ 94 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDTFDL 94 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSCEEE
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhhhcccce
Confidence 467899999999998 4788888887 676 899999999 88888764 432 22221 11111 112367998
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 193 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+.-. +. ..... +....++|+|+|+++.
T Consensus 95 vi~~~-~~--~~~~~----~~~~~~~l~~~G~iv~ 122 (168)
T d1piwa2 95 IVVCA-SS--LTDID----FNIMPKAMKVGGRIVS 122 (168)
T ss_dssp EEECC-SC--STTCC----TTTGGGGEEEEEEEEE
T ss_pred EEEEe-cC--Cccch----HHHHHHHhhccceEEE
Confidence 88521 11 01001 2334588999999874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.57 E-value=0.0044 Score=50.68 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=62.1
Q ss_pred CCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCce
Q 015306 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (409)
...++.+||-+|+|. |.++..+++ .|+.+|+++|.++ -++.+++. +.. .++..+-.... .....+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga~---~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD---HVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCHHHHHHHHTTTCCE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----ccc---eeecCcccHHHHHHHhhCCCCc
Confidence 457899999999987 566677776 7888999999999 88877753 322 33333221111 123569
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
|+|+-.. .. ...++...+.|++||+++.
T Consensus 102 d~vid~~-----g~----~~~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 102 NVAMDFV-----GS----QATVDYTPYLLGRMGRLII 129 (172)
T ss_dssp EEEEESS-----CC----HHHHHHGGGGEEEEEEEEE
T ss_pred eEEEEec-----Cc----chHHHHHHHHHhCCCEEEE
Confidence 9998532 11 1335666689999999884
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.54 E-value=0.0019 Score=52.78 Aligned_cols=94 Identities=21% Similarity=0.182 Sum_probs=61.8
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc--------c-C
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--------E-L 185 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--------~-~ 185 (409)
....++.+||-+|||. |.++..+++ .|+ +|+++|.++ -++.|++. +.. ..+......+. . .
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~~ 94 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRSA 94 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHHH
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhcc
Confidence 4578899999999984 778888888 565 999999999 88888764 321 23322211110 0 1
Q ss_pred CCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 186 ~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
....+|+|+-.. .. +..+....++|+|+|+++.
T Consensus 95 ~g~g~D~vid~~-----g~----~~~~~~a~~~~~~~G~iv~ 127 (170)
T d1e3ja2 95 IGDLPNVTIDCS-----GN----EKCITIGINITRTGGTLML 127 (170)
T ss_dssp SSSCCSEEEECS-----CC----HHHHHHHHHHSCTTCEEEE
T ss_pred cccCCceeeecC-----CC----hHHHHHHHHHHhcCCceEE
Confidence 136789998421 11 2345555689999999884
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.10 E-value=0.0058 Score=49.51 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=58.8
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCc
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTK 189 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~ 189 (409)
....++.+||-+|+|. |.++..+++ .| .+|+++|.++ -++.+++ .|.. .++...-.+.. ...+.
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~~~g~ 94 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQRDIGGA 94 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSSE
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHHHhhcCC
Confidence 4578899999999986 777888888 56 5999999999 8887765 3432 23332222211 11233
Q ss_pred eeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 190 ~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+|+|++.. . ...+....++|+|+|+++.
T Consensus 95 ~~~i~~~~------~----~~~~~~~~~~l~~~G~iv~ 122 (166)
T d1llua2 95 HGVLVTAV------S----NSAFGQAIGMARRGGTIAL 122 (166)
T ss_dssp EEEEECCS------C----HHHHHHHHTTEEEEEEEEE
T ss_pred cccccccc------c----chHHHHHHHHhcCCcEEEE
Confidence 44444321 1 1234556689999999874
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.85 E-value=0.0093 Score=48.41 Aligned_cols=95 Identities=24% Similarity=0.245 Sum_probs=62.6
Q ss_pred cCCCCCCEEEEEcCC--CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCC
Q 015306 118 KFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPV 187 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG--~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 187 (409)
....++.+||-+||| .|.++..+++ .|..+|+++|.++ -.+.+++. |.. .++..+-.+.. ...
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRITES 95 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTTT
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHHhhc
Confidence 467899999999973 4566666666 7888999999999 88888764 432 23333322221 123
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+.+|+|+... .. ...++...+.++|||+++..
T Consensus 96 ~~~d~vid~~-----g~----~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 96 KGVDAVIDLN-----NS----EKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp SCEEEEEESC-----CC----HHHHTTGGGGEEEEEEEEEC
T ss_pred ccchhhhccc-----cc----chHHHhhhhhcccCCEEEEe
Confidence 6799998521 11 23345556899999998743
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.004 Score=50.74 Aligned_cols=94 Identities=24% Similarity=0.232 Sum_probs=60.5
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc-ccCCCCceeEE
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~DvV 193 (409)
....+|.+||-+|||. |.++..+++ .|+ +++++|.++ -.+.+++. |.. .++...-.+ .....+.+|++
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~l----Gad---~~i~~~~~~~~~~~~~~~D~v 97 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAAHLKSFDFI 97 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHTTTTCEEEE
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhcc----CCc---EEEECchhhHHHHhcCCCcee
Confidence 5678999999999986 778888888 566 777899888 77777653 432 223222211 11223679998
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
+-.. + .... +....++|+++|+++.-
T Consensus 98 id~~-g----~~~~----~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 98 LNTV-A----APHN----LDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EECC-S----SCCC----HHHHHTTEEEEEEEEEC
T ss_pred eeee-e----cchh----HHHHHHHHhcCCEEEEe
Confidence 8532 1 1112 23445899999998853
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.65 E-value=0.016 Score=47.16 Aligned_cols=97 Identities=21% Similarity=0.138 Sum_probs=61.6
Q ss_pred HHhccCCCCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccc-cc------
Q 015306 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EI------ 183 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~------ 183 (409)
+.+.....+|.+||-.|||. |.++..+++ .|+..|+++|.++ ..+.+++. |.. .++..+-. +.
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~---~~i~~~~~~~~~~~~~~ 92 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLI 92 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc---EEEeCCchhhHHHHHHH
Confidence 44445678999999999984 466666777 7889999999999 88887764 332 22222111 11
Q ss_pred cCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 184 ~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
....+.+|+|+-.. + . ...++....++++||.++
T Consensus 93 ~~~~~g~D~vid~~-G----~----~~~~~~~~~~~~~g~~~~ 126 (176)
T d2fzwa2 93 EMTDGGVDYSFECI-G----N----VKVMRAALEACHKGWGVS 126 (176)
T ss_dssp HHTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEE
T ss_pred HHcCCCCcEeeecC-C----C----HHHHHHHHHhhcCCceeE
Confidence 01236799998531 1 1 234455667888886544
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.60 E-value=0.0087 Score=53.67 Aligned_cols=67 Identities=27% Similarity=0.239 Sum_probs=54.1
Q ss_pred EEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEecc
Q 015306 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~ 198 (409)
+|||+-||.|.+++-+-++|...+.++|+++ +++..+.+. + -+++.+|+.++... -..+|++++.+.
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~~~~dll~~g~P 70 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGPP 70 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHcccccEEeeccc
Confidence 6999999999999999889998888999999 888777664 2 25678999887633 357999998643
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.035 Score=48.25 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (409)
.++++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+.+.++.++.+|+.+.. -.
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 57899999999988 45666777787 899999999 88888888887777778999999997743 01
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.++.|++|.+.
T Consensus 87 ~g~iD~lVnnA 97 (257)
T d1xg5a_ 87 HSGVDICINNA 97 (257)
T ss_dssp HCCCSEEEECC
T ss_pred cCCCCEEEecc
Confidence 36799999864
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.54 E-value=0.012 Score=53.00 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEecc
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~DvVvs~~~ 198 (409)
..+.+|||+-||.|.+++.+.++|..-|.++|+++ +++..+.+... ..++|+.++... ...+|+++..+.
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~~~~~Dll~ggpP 80 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhhcceeeeeecccc
Confidence 45689999999999999999999988889999999 99988887632 125788887533 257999998753
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.47 E-value=0.011 Score=51.03 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=40.7
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE 165 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~ 165 (409)
..+|..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++++.
T Consensus 210 s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 47889999999999999998888864 999999999 9999999875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.33 E-value=0.0061 Score=49.36 Aligned_cols=94 Identities=17% Similarity=0.084 Sum_probs=57.5
Q ss_pred cCCCCCCEEEEEcCCC-ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCce
Q 015306 118 KFLFKDKVVLDVGAGT-GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (409)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (409)
....++.+||-.|||+ |.++..+++....+|+++|.++ -++.+++ .|.. .++...-.+.. ...+.+
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga~---~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKVGGVH 95 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHHSSEE
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCcc---eecccccchhhhhcccccCCCc
Confidence 3567899999999987 6777777774334899999999 8877765 3432 12211111111 112445
Q ss_pred eEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 191 DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
|+|++ .. . ...+....+.|+|+|.++..
T Consensus 96 ~~v~~-~~-----~----~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 96 AAVVT-AV-----S----KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EEEES-SC-----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred eEEee-cC-----C----HHHHHHHHHHhccCCceEec
Confidence 55442 11 1 23455666889999998853
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.17 E-value=0.12 Score=45.79 Aligned_cols=122 Identities=7% Similarity=0.029 Sum_probs=81.9
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEccccc
Q 015306 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIEE 182 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~~~ 182 (409)
.|+..+-+.+.+... .....|+.||||--.-+..+...+..+++=||.-++++.-++.+...+. ..+..++..|+.+
T Consensus 73 ~Rtr~~D~~~~~~~~-~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 151 (297)
T d2uyoa1 73 VRTNFFDTYFNNAVI-DGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 151 (297)
T ss_dssp HHHHHHHHHHHHHHH-TTCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHh-hCCCeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccc
Confidence 344444445544332 2334566799998777665533334478888875577777778877764 3557888888875
Q ss_pred cc--------CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 183 IE--------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 183 ~~--------~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
.. +.....-+++++.+.+++ .+.....+++.+..+..||+.++..
T Consensus 152 ~~~~~L~~~g~d~~~ptl~i~EGvl~YL-~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 152 DWPPALRSAGFDPSARTAWLAEGLLMYL-PATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp CHHHHHHHTTCCTTSCEEEEECSCGGGS-CHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred hHHHHHHhcCCCCCCCEEEEEccccccC-CHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 21 223556788888766655 4467889999999999999998864
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.16 E-value=0.0088 Score=53.46 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=41.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (409)
..+|..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++++...
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence 47899999999999999999888865 999999999 999998887543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.026 Score=45.97 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=62.8
Q ss_pred HHHhccCCCCCCEEEEEcCCC--ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----
Q 015306 113 VIYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---- 184 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~--G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 184 (409)
+|.+...+.++.+||-.|+|. |.++..+|+ .|+ +|++++.++ -.+.+++. |.. .++..+-.++.
T Consensus 19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~l----Ga~---~vi~~~~~d~~~~v~ 90 (179)
T d1qora2 19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERLK 90 (179)
T ss_dssp HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhc----CCe---EEEECCCCCHHHHHH
Confidence 344445678899999997775 678888888 565 999999999 88887753 432 23322222221
Q ss_pred --CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 --~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+|+... .. . .+......|+++|.++.
T Consensus 91 ~~t~g~g~d~v~d~~-----g~-~----~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 91 EITGGKKVRVVYDSV-----GR-D----TWERSLDCLQRRGLMVS 125 (179)
T ss_dssp HHTTTCCEEEEEECS-----CG-G----GHHHHHHTEEEEEEEEE
T ss_pred HHhCCCCeEEEEeCc-----cH-H----HHHHHHHHHhcCCeeee
Confidence 1246799987532 11 1 23455688999998763
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.07 E-value=0.01 Score=48.71 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=59.7
Q ss_pred HHhccCCCCCCEEEEEcC--CCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015306 114 IYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (409)
+.+...+.+|.+||-.|. |.|.++..+|+ .|+ +|+++.-++ -.+.+++ .|... ++...-.++.
T Consensus 17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~----~Ga~~---vi~~~~~~~~~~v~~ 88 (183)
T d1pqwa_ 17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVEY---VGDSRSVDFADEILE 88 (183)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCSE---EEETTCSTHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccccc----ccccc---cccCCccCHHHHHHH
Confidence 344456788999999874 34677888888 566 777777776 6666654 45432 2222222211
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+|+... .. ..++.+.+.|+++|+++.
T Consensus 89 ~t~~~g~d~v~d~~-----g~-----~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 89 LTDGYGVDVVLNSL-----AG-----EAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp HTTTCCEEEEEECC-----CT-----HHHHHHHHTEEEEEEEEE
T ss_pred HhCCCCEEEEEecc-----cc-----hHHHHHHHHhcCCCEEEE
Confidence 1246799999632 11 234455689999999884
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.05 E-value=0.0024 Score=52.68 Aligned_cols=97 Identities=21% Similarity=0.202 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE----------ccccc-----
Q 015306 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK----------GKIEE----- 182 (409)
Q Consensus 121 ~~~~~VLDlGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~----------~d~~~----- 182 (409)
.++.+||-||+|. |..+...|. .|+ +|+++|.++ .++..+...... +++.. +...+
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~-----i~~~~~~~~~~~~~~gyA~~~s~~~ 100 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKF-----ITVDDEAMKTAETAGGYAKEMGEEF 100 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEE-----CCC----------------------
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcce-----EEEeccccccccccccchhhcCHHH
Confidence 4567999999997 666776666 666 999999999 887776643211 11100 00000
Q ss_pred -------ccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 183 -------IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 183 -------~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
+.-.-...|+||...+ ..+...+.-+-+.+.+.+|||.+++
T Consensus 101 ~~~~~~~l~~~l~~aDlVI~tal---ipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 101 RKKQAEAVLKELVKTDIAITTAL---IPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp -CCHHHHHHHHHTTCSEEEECCC---CTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHHHHHHhhhhheeeee---cCCcccceeehHHHHHhcCCCcEEE
Confidence 0000146999998543 2222222223355668899999988
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.02 E-value=0.018 Score=50.37 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=42.4
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (409)
..+|..|||.-||+|..+..+.+.|- +.+|+|+++ ..+.|++++...
T Consensus 205 s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 47899999999999999998888865 999999999 999999998764
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.0077 Score=54.55 Aligned_cols=70 Identities=20% Similarity=0.159 Sum_probs=53.4
Q ss_pred CCEEEEEcCCCChHHHHHHHcCCC--EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---CCCceeEEEEe
Q 015306 123 DKVVLDVGAGTGILSLFCAKAGAA--HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDIIISE 196 (409)
Q Consensus 123 ~~~VLDlGcG~G~l~~~la~~g~~--~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~DvVvs~ 196 (409)
+.+|+|+.||.|.+++.+.++|.. -|.++|+++ +++..+.+.. ...++.+|+.++.. +...+|++++.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~~~~~Dll~gg 75 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcCCCCccEEEee
Confidence 458999999999999888778863 478999999 8888777642 14567788887653 23479999986
Q ss_pred cc
Q 015306 197 WM 198 (409)
Q Consensus 197 ~~ 198 (409)
+.
T Consensus 76 pP 77 (343)
T d1g55a_ 76 PP 77 (343)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.82 E-value=0.073 Score=42.54 Aligned_cols=85 Identities=16% Similarity=0.061 Sum_probs=57.2
Q ss_pred EEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEeccccc
Q 015306 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (409)
Q Consensus 125 ~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~~ 201 (409)
+|.=||+|. +.++..+.+.|. +|+++|.++ .++.+++ .+.-+ ....+.+.+ ...|+|+...
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~~~~----~~~DiIilav---- 65 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQLVD---EAGQDLSLL----QTAKIIFLCT---- 65 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTSCS---EEESCGGGG----TTCSEEEECS----
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHH----hhccc---eeeeecccc----cccccccccC----
Confidence 577888884 456667777776 899999998 7776654 33322 222233222 6789998632
Q ss_pred ccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 202 LLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.......+++.+...|+++.+++-
T Consensus 66 --p~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 66 --PIQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp --CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred --cHhhhhhhhhhhhhhcccccceee
Confidence 235667888999899999887763
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.74 E-value=0.076 Score=42.60 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=57.3
Q ss_pred EEEEEcCCC--ChHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEecccc
Q 015306 125 VVLDVGAGT--GILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (409)
Q Consensus 125 ~VLDlGcG~--G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvVvs~~~~~ 200 (409)
+|+=||||. |.++..+.+.| ..+|+++|.++ .++.|++. +. +.....+..... ....|+|+...
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~~--~~~~dlIila~--- 70 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKVE--DFSPDFVMLSS--- 70 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGGG--GTCCSEEEECS---
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhhh--ccccccccccC---
Confidence 588899986 35666676666 45899999999 88877753 32 222222222221 24689998632
Q ss_pred cccChhHHHHHHHHHHhcccCCeEEE
Q 015306 201 FLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.......++..+...++++..++
T Consensus 71 ---p~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 71 ---PVRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp ---CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred ---Cchhhhhhhhhhhcccccccccc
Confidence 22456678888889999887665
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.52 E-value=0.05 Score=44.12 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=37.9
Q ss_pred HHhccCCCCCCEEEEEcCCCC-hHHHHHHH-cCCCEEEEEecHH-HHHHHHHH
Q 015306 114 IYQNKFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~G-~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (409)
+.+.....+|.+||-+|+|.+ .++..+++ .|+.+|+++|.++ -.+.+++.
T Consensus 20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~ 72 (176)
T d2jhfa2 20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 72 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence 444456889999999999753 44444445 7888999999999 88877664
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.41 E-value=0.099 Score=42.10 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCC-hHHHHHHH-cCCCEEEEEecHH-HHHHHHHH
Q 015306 113 VIYQNKFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~G-~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (409)
++.+.....++.+||-+|+|.+ .++..+++ .|+..|+++|.++ -++.+++.
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~ 72 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF 72 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence 3444456889999999999984 44444444 7888999999999 88887753
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.40 E-value=0.051 Score=49.47 Aligned_cols=104 Identities=16% Similarity=0.245 Sum_probs=61.6
Q ss_pred CEEEEEcCCCChHHHHHHHc------------C-----CCEEEEEecHH--HHHHHHHHHHHcCCCC--cEEEEEccccc
Q 015306 124 KVVLDVGAGTGILSLFCAKA------------G-----AAHVYAVECSQ--MANMAKQIVEANGFSN--VITVLKGKIEE 182 (409)
Q Consensus 124 ~~VLDlGcG~G~l~~~la~~------------g-----~~~V~~vD~s~--~~~~a~~~~~~~~~~~--~i~~~~~d~~~ 182 (409)
-+|.|+||.+|..++.+... + .-+|+--|... .-...+.......... -+..+-+.+..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 57999999999776533221 1 11566666544 2222222111111111 13334455555
Q ss_pred ccCCCCceeEEEEecccccccC------------------------------hhHHHHHHHHHHhcccCCeEEEc
Q 015306 183 IELPVTKVDIIISEWMGYFLLF------------------------------ENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 183 ~~~~~~~~DvVvs~~~~~~l~~------------------------------~~~~~~~l~~~~~~LkpgG~lip 227 (409)
--+|.++.|+++|....+.|.. ..++..+|+.+.+-|+|||+++.
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl 207 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 5578899999999654443321 12567899999999999999884
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.29 E-value=0.085 Score=42.93 Aligned_cols=98 Identities=18% Similarity=0.072 Sum_probs=63.5
Q ss_pred HHHhccCCCCCCEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015306 113 VIYQNKFLFKDKVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (409)
++.+...+.+|.+||-.|+|. |..+..+++....+|+++.-++ ..+.+++. |... ++..+-++..
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~~---vi~~~~~~~~~~~~~ 92 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFDA---AFNYKTVNSLEEALK 92 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCSE---EEETTSCSCHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhhh---hcccccccHHHHHHH
Confidence 344456678999999888866 5778888884334999999888 77766653 4322 2222222111
Q ss_pred -CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+|+-. . + ...++...+.|+++|.++.
T Consensus 93 ~~~~~Gvd~v~D~-----v---G--~~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 93 KASPDGYDCYFDN-----V---G--GEFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp HHCTTCEEEEEES-----S---C--HHHHHHHGGGEEEEEEEEE
T ss_pred HhhcCCCceeEEe-----c---C--chhhhhhhhhccCCCeEEe
Confidence 124679999842 1 1 1345677799999999884
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.99 E-value=0.055 Score=44.44 Aligned_cols=94 Identities=12% Similarity=0.114 Sum_probs=57.7
Q ss_pred cCCCCC--CEEEEEc--CCCChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC
Q 015306 118 KFLFKD--KVVLDVG--AGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 186 (409)
Q Consensus 118 ~~~~~~--~~VLDlG--cG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 186 (409)
....++ .+||-.| .|.|..++.+|+ .|+..|+++..++ ....+. ...+.. .++...-.++. ..
T Consensus 24 ~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~---~~~gad---~vi~~~~~~~~~~~~~~~ 97 (187)
T d1vj1a2 24 GHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLT---SELGFD---AAVNYKTGNVAEQLREAC 97 (187)
T ss_dssp SCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHH---HHSCCS---EEEETTSSCHHHHHHHHC
T ss_pred hCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhh---hcccce---EEeeccchhHHHHHHHHh
Confidence 445655 7899987 456899999999 7888888877665 333222 223432 22332222211 12
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+..+|+|+-.. . ...+....+.|+++|+++.
T Consensus 98 ~~GvDvv~D~v------G----g~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 98 PGGVDVYFDNV------G----GDISNTVISQMNENSHIIL 128 (187)
T ss_dssp TTCEEEEEESS------C----HHHHHHHHTTEEEEEEEEE
T ss_pred ccCceEEEecC------C----chhHHHHhhhccccccEEE
Confidence 36799998421 1 1235666789999999874
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.22 E-value=0.058 Score=44.36 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=56.9
Q ss_pred HHHhccCCCCCCEEEEEcCCC---ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---
Q 015306 113 VIYQNKFLFKDKVVLDVGAGT---GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--- 184 (409)
Q Consensus 113 ~l~~~~~~~~~~~VLDlGcG~---G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 184 (409)
++.......+|.+||-+.+|+ |..++.+|+ .|+ +|+++=-++ ..+...+.+.+.|.+..+..-..+..++.
T Consensus 19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v 97 (189)
T d1gu7a2 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTI 97 (189)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHH
Confidence 344446678888888884443 567777888 677 777763333 33333344445565432221111221111
Q ss_pred -----CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 185 -----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 185 -----~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.....+|+|+-. + +.. .+....+.|+|+|+++.
T Consensus 98 ~~~~~~~g~~vdvv~D~-v-----g~~----~~~~~~~~l~~~G~~v~ 135 (189)
T d1gu7a2 98 KEWIKQSGGEAKLALNC-V-----GGK----SSTGIARKLNNNGLMLT 135 (189)
T ss_dssp HHHHHHHTCCEEEEEES-S-----CHH----HHHHHHHTSCTTCEEEE
T ss_pred HHHHhhccCCceEEEEC-C-----Ccc----hhhhhhhhhcCCcEEEE
Confidence 013569999842 1 112 23445589999999884
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.03 E-value=0.42 Score=40.69 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015306 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (409)
...|++||--|++.| .++..+++.|+ +|+.+|.++ -++...+.+...+ .++.++.+|+.+...
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 357899999999998 56777888887 899999999 7777777776655 458999999988631
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
..+..|+++.+.
T Consensus 81 ~~g~idilinna 92 (244)
T d1yb1a_ 81 EIGDVSILVNNA 92 (244)
T ss_dssp HTCCCSEEEECC
T ss_pred HcCCCceeEeec
Confidence 246799999863
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.78 E-value=0.035 Score=45.02 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=58.3
Q ss_pred cCCCCCCEEEEEcC-CC-ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015306 118 KFLFKDKVVLDVGA-GT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (409)
Q Consensus 118 ~~~~~~~~VLDlGc-G~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~DvV 193 (409)
....++.+||-.|+ |. |.++..+++ .|+ +|++++.++ -.+.+++ .|.+..+ -..+..........+|+|
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa~~~i--~~~~~~~~~~~~~g~D~v 95 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAEEAA--TYAEVPERAKAWGGLDLV 95 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCSEEE--EGGGHHHHHHHTTSEEEE
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----cccceee--ehhhhhhhhhcccccccc
Confidence 56789999999885 33 677888888 566 899999888 7777665 3543211 111111111123679998
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 194 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+- ..+ .. +....+.|+|+|+++.
T Consensus 96 ~d-~~G------~~----~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 96 LE-VRG------KE----VEESLGLLAHGGRLVY 118 (171)
T ss_dssp EE-CSC------TT----HHHHHTTEEEEEEEEE
T ss_pred cc-ccc------hh----HHHHHHHHhcCCcEEE
Confidence 85 221 12 2445589999999884
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.32 Score=39.87 Aligned_cols=99 Identities=19% Similarity=0.289 Sum_probs=65.5
Q ss_pred CEEEEEcCCC--ChHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------CCC--------------CcEEEEEcc
Q 015306 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------GFS--------------NVITVLKGK 179 (409)
Q Consensus 124 ~~VLDlGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~~~--------------~~i~~~~~d 179 (409)
++|--||+|+ ..++..++..|. .|+.+|.++ .++.+++.+... +.. .++.+.. |
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-d 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST-D 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-C
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-h
Confidence 5789999987 255667777877 999999999 988887766532 221 1122221 2
Q ss_pred cccccCCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 180 ~~~~~~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
..+. -...|+|+-.. ......-..++..+.++++++.++.-++..
T Consensus 83 ~~~a---~~~ad~ViEav----~E~l~~K~~v~~~l~~~~~~~~ilasnTS~ 127 (192)
T d1f0ya2 83 AASV---VHSTDLVVEAI----VENLKVKNELFKRLDKFAAEHTIFASNTSS 127 (192)
T ss_dssp HHHH---TTSCSEEEECC----CSCHHHHHHHHHHHTTTSCTTCEEEECCSS
T ss_pred hHhh---hcccceehhhc----ccchhHHHHHHHHHhhhcccCceeeccCcc
Confidence 2111 25688988532 344455678899999999999888755443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.32 E-value=0.065 Score=43.67 Aligned_cols=98 Identities=17% Similarity=0.116 Sum_probs=60.0
Q ss_pred HHhccCCCCCCEEEEEcCCC--ChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCC
Q 015306 114 IYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPV 187 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG~--G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~ 187 (409)
+.......++.+||--|++. |.+++.+++ .|+ +|+++--++ -.+.+++. |.+..+.. ..+..+. ....
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~l----Ga~~vi~~-~~~~~~~~~~~~~ 96 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVL----GAKEVLAR-EDVMAERIRPLDK 96 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHT----TCSEEEEC-C---------CCS
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhc----ccceeeec-chhHHHHHHHhhc
Confidence 44445566788999998654 588889898 555 889998888 77777653 43321211 1111111 1234
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
+.+|+|+-.. + . .. +....+.|+|||+++.
T Consensus 97 ~gvD~vid~v-g----g-~~----~~~~l~~l~~~Griv~ 126 (176)
T d1xa0a2 97 QRWAAAVDPV-G----G-RT----LATVLSRMRYGGAVAV 126 (176)
T ss_dssp CCEEEEEECS-T----T-TT----HHHHHHTEEEEEEEEE
T ss_pred cCcCEEEEcC-C----c-hh----HHHHHHHhCCCceEEE
Confidence 7899887532 1 1 12 4455589999999984
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.06 E-value=0.71 Score=41.11 Aligned_cols=120 Identities=12% Similarity=0.116 Sum_probs=75.5
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCChHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcC---------------
Q 015306 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANG--------------- 168 (409)
Q Consensus 105 ~r~~~~~~~l~~~~~~~~~~~VLDlGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~--------------- 168 (409)
.|+..+...+.+.....+...|+-||||.-.....+.. .+..+++=||..++++.=++.+..+.
T Consensus 79 ~Rt~~id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~ 158 (328)
T d1rjda_ 79 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK 158 (328)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhcccccccccc
Confidence 46666666655544445566899999999988877765 44445666776664333333333210
Q ss_pred -----CCCcEEEEEccccccc---------CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEE
Q 015306 169 -----FSNVITVLKGKIEEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (409)
Q Consensus 169 -----~~~~i~~~~~d~~~~~---------~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (409)
-+++..++.+|+.+.. +.....-+++++.+..++. +.....+++.+.+....+..+
T Consensus 159 ~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~-~~~~~~li~~~~~~f~~~~~i 228 (328)
T d1rjda_ 159 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMH-NNESQLLINTIMSKFSHGLWI 228 (328)
T ss_dssp TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHCSSEEEE
T ss_pred ccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCC-HHHHHHHHHHHHHhCCCceEE
Confidence 1246788999987753 2234566899998766664 455678888887776544433
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=91.58 E-value=0.43 Score=40.98 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=56.8
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----------L 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 185 (409)
.+|++||-.|+..| .++..+++.|+ +|+.++.++ -++.+.+.+...+. .+.++.+|+.+.. .
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence 47899999999887 45667777887 899999999 88877777777664 4888899997753 1
Q ss_pred CCCceeEEEEe
Q 015306 186 PVTKVDIIISE 196 (409)
Q Consensus 186 ~~~~~DvVvs~ 196 (409)
-.+..|+++.+
T Consensus 81 ~~g~idilinn 91 (258)
T d1ae1a_ 81 FDGKLNILVNN 91 (258)
T ss_dssp TTSCCCEEEEC
T ss_pred hCCCcEEEecc
Confidence 12678999875
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.54 E-value=0.44 Score=36.13 Aligned_cols=61 Identities=18% Similarity=0.347 Sum_probs=42.7
Q ss_pred EEEEEcCCCChHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015306 125 VVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~----~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs 195 (409)
+|+-+|+ |.++..+++ .|. .|+.+|.++ .++.+++.. + +.++.+|..+.. ..-..+|.+++
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~---~----~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI---D----ALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC---S----SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred EEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh---h----hhhccCcccchhhhhhcChhhhhhhcc
Confidence 5777776 556555554 454 899999999 887665431 2 578999988754 23467999987
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=91.47 E-value=0.41 Score=41.09 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=56.5
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (409)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+.. -.
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 57899999999887 45667777887 899999999 7777777777665 45888999987642 01
Q ss_pred -CCceeEEEEec
Q 015306 187 -VTKVDIIISEW 197 (409)
Q Consensus 187 -~~~~DvVvs~~ 197 (409)
.++.|++|.+.
T Consensus 83 ~~~~idilvnnA 94 (259)
T d2ae2a_ 83 FHGKLNILVNNA 94 (259)
T ss_dssp TTTCCCEEEECC
T ss_pred hCCCceEEEECC
Confidence 24799999863
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=91.37 E-value=0.32 Score=41.77 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+...++.++.+|+.+... .
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 47899999999988 46777888887 899999998 877777666665555568899999977531 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
-++.|++|.+.
T Consensus 81 ~G~iDiLVnnA 91 (258)
T d1iy8a_ 81 FGRIDGFFNNA 91 (258)
T ss_dssp HSCCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 26799999863
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=91.18 E-value=0.4 Score=39.05 Aligned_cols=79 Identities=14% Similarity=0.020 Sum_probs=52.2
Q ss_pred HhccCCCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccc---ccCCC
Q 015306 115 YQNKFLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE---IELPV 187 (409)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~ 187 (409)
........+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+..+. .+.+...|+.+ +.-.-
T Consensus 15 ~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 15 KAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAV 90 (191)
T ss_dssp HHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHT
T ss_pred HHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHh
Confidence 33345678999999998877 45667777887 899999998 7666666555432 13344444433 22113
Q ss_pred CceeEEEEec
Q 015306 188 TKVDIIISEW 197 (409)
Q Consensus 188 ~~~DvVvs~~ 197 (409)
+.+|++|.+.
T Consensus 91 ~~iDilin~A 100 (191)
T d1luaa1 91 KGAHFVFTAG 100 (191)
T ss_dssp TTCSEEEECC
T ss_pred cCcCeeeecC
Confidence 6789999863
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.15 E-value=0.33 Score=41.99 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=65.3
Q ss_pred CCEE-EEEcCCCCh---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------CC
Q 015306 123 DKVV-LDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 187 (409)
Q Consensus 123 ~~~V-LDlGcG~G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 187 (409)
|++| |-=|+++|+ ++..+++.+..+|+.++.++ .++.+.+.+...+. ++.++.+|+.+..- ..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 5666 555766663 34556665455999999999 88888777777663 48899999987541 13
Q ss_pred CceeEEEEecccccc---cCh---hHH-----------HHHHHHHHhcccCCeEEE
Q 015306 188 TKVDIIISEWMGYFL---LFE---NML-----------NTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l---~~~---~~~-----------~~~l~~~~~~LkpgG~li 226 (409)
++.|++|.+. +... ..+ ..+ -.+.+.+...|+++|.++
T Consensus 80 g~iDiLVnNA-Gi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~iv 134 (275)
T d1wmaa1 80 GGLDVLVNNA-GIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVV 134 (275)
T ss_dssp SSEEEEEECC-CCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCcEEEEEcC-CcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 6899999974 2111 010 111 134455667788889876
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=90.72 E-value=0.15 Score=40.97 Aligned_cols=97 Identities=20% Similarity=0.128 Sum_probs=59.5
Q ss_pred HHhccCCCCCCEEEEEcCC--CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CC
Q 015306 114 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LP 186 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG--~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~ 186 (409)
|.......++.+||--|++ .|.++..+|+ .|+ +|+++--++ -.+.+++. |.+. + +...+...-. ..
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----Gad~-v-i~~~~~~~~~~~~~~ 87 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GASE-V-ISREDVYDGTLKALS 87 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCSE-E-EEHHHHCSSCCCSSC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----cccc-e-Eeccchhchhhhccc
Confidence 4433344556678887753 4688888888 676 899999988 77777654 4321 1 2111111111 22
Q ss_pred CCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEc
Q 015306 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 187 ~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.+.+|+|+-.. .. ..+....+.|+|+|+++.
T Consensus 88 ~~gvd~vid~v------gg----~~~~~~~~~l~~~G~iv~ 118 (167)
T d1tt7a2 88 KQQWQGAVDPV------GG----KQLASLLSKIQYGGSVAV 118 (167)
T ss_dssp CCCEEEEEESC------CT----HHHHHHHTTEEEEEEEEE
T ss_pred CCCceEEEecC------cH----HHHHHHHHHhccCceEEE
Confidence 46799988532 11 234556689999999874
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=90.67 E-value=0.36 Score=44.34 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=46.8
Q ss_pred CCCCCEEEEEcCCCChHHHHHHH-cC--CCEEEEEecHH-HHHHHHHHHHHcCCCC---cEEEEEcc
Q 015306 120 LFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEANGFSN---VITVLKGK 179 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G~l~~~la~-~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~---~i~~~~~d 179 (409)
..++.+++|||+-.|..+..++. .+ ..+|+++|+++ ..+..++++..+...+ ++.++..-
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~a 276 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCG 276 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSE
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEEEE
Confidence 35677999999999998887765 32 46999999999 9999999998876542 46665543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.59 E-value=0.3 Score=41.81 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=55.5
Q ss_pred CCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------C
Q 015306 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (409)
..+++++|-.|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+.. -
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 357899999998876 33444555676 899999999 8887777776655 35899999998743 1
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
..++.|++|.+.
T Consensus 84 ~~g~iDilvnna 95 (251)
T d2c07a1 84 EHKNVDILVNNA 95 (251)
T ss_dssp HCSCCCEEEECC
T ss_pred hcCCceeeeecc
Confidence 137899999864
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.35 E-value=0.4 Score=41.16 Aligned_cols=74 Identities=24% Similarity=0.224 Sum_probs=56.7
Q ss_pred CCCCEEEEEcCCCCh---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C----C-
Q 015306 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L----P- 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~- 186 (409)
.+|+++|--|++.|+ ++..+++.|+ +|+.++.++ -++.+.+.+...+. ++..+.+|+.+.. + .
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHH
Confidence 478999999998874 6677777887 899999998 77777666666553 4899999997643 0 0
Q ss_pred -CCceeEEEEec
Q 015306 187 -VTKVDIIISEW 197 (409)
Q Consensus 187 -~~~~DvVvs~~ 197 (409)
.+..|++|.+.
T Consensus 83 ~~g~idilvnnA 94 (259)
T d1xq1a_ 83 FGGKLDILINNL 94 (259)
T ss_dssp HTTCCSEEEEEC
T ss_pred hCCCcccccccc
Confidence 26799999863
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=89.87 E-value=0.51 Score=40.31 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------CCC
Q 015306 123 DKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PVT 188 (409)
Q Consensus 123 ~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~ 188 (409)
|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+. ++.++.+|+.+... .-+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 678888898887 35667777787 899999999 88877777776653 58999999977530 136
Q ss_pred ceeEEEEec
Q 015306 189 KVDIIISEW 197 (409)
Q Consensus 189 ~~DvVvs~~ 197 (409)
+.|++|.+.
T Consensus 79 ~iDilVnnA 87 (257)
T d2rhca1 79 PVDVLVNNA 87 (257)
T ss_dssp SCSEEEECC
T ss_pred CCCEEEecc
Confidence 899999863
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.78 E-value=0.38 Score=38.46 Aligned_cols=93 Identities=15% Similarity=0.137 Sum_probs=56.9
Q ss_pred CEEEEEcCCCC--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC-CC-CcEE----EEEcccccccCCCCceeEEE
Q 015306 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG-FS-NVIT----VLKGKIEEIELPVTKVDIII 194 (409)
Q Consensus 124 ~~VLDlGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~-~~-~~i~----~~~~d~~~~~~~~~~~DvVv 194 (409)
++|--||+|.- .++..|++.|. +|+.+|.++ .++.+++.-.... .+ .... .+..|..+. -..+|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---hcCCCEEE
Confidence 57888999974 55666777876 999999998 7666554321000 00 0000 111122111 15689998
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 195 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
.-. .......+++++...|+++..++
T Consensus 78 i~v------~~~~~~~~~~~i~~~l~~~~~iv 103 (184)
T d1bg6a2 78 IVV------PAIHHASIAANIASYISEGQLII 103 (184)
T ss_dssp ECS------CGGGHHHHHHHHGGGCCTTCEEE
T ss_pred EEE------chhHHHHHHHHhhhccCCCCEEE
Confidence 632 23456788899999999988766
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.75 E-value=0.54 Score=40.31 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (409)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++..+.+|+.+.. + .
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999999887 35677778887 899999999 8888887777665 35889999987643 0 1
Q ss_pred CCceeEEEEe
Q 015306 187 VTKVDIIISE 196 (409)
Q Consensus 187 ~~~~DvVvs~ 196 (409)
-+..|++|.+
T Consensus 80 ~g~iDilVnn 89 (260)
T d1zema1 80 FGKIDFLFNN 89 (260)
T ss_dssp HSCCCEEEEC
T ss_pred hCCCCeehhh
Confidence 2679999976
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.70 E-value=0.71 Score=39.69 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=55.2
Q ss_pred CCCCEEEEEcCCCCh---HHHHHHHcCCCEEEEEecH-H-HHHHHHHHHHHcCCCCcEEEEEccccccc----------C
Q 015306 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~---l~~~la~~g~~~V~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (409)
.+|++||--|++.|+ ++..+++.|+ +|+.++.+ + .++.+.+.+...+. ++.++.+|+.+.. -
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence 578999999998883 6777777887 88888876 4 66766666776664 4889999997743 0
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
..++.|++|.+.
T Consensus 93 ~~g~idilV~na 104 (272)
T d1g0oa_ 93 IFGKLDIVCSNS 104 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCcccccc
Confidence 126789999864
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=89.53 E-value=0.64 Score=42.05 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=47.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHHc-C-------CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015306 121 FKDKVVLDVGAGTGILSLFCAKA-G-------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (409)
Q Consensus 121 ~~~~~VLDlGcG~G~l~~~la~~-g-------~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (409)
.+...|+|+|+|+|.++.-+.+. . ..+++.+|.|+ +.+..++.+.. . .++.++ .++.+++ ...-
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~--~-~~i~w~-~~~~~~~---~~~g 150 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--I-RNIHWH-DSFEDVP---EGPA 150 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--C-SSEEEE-SSGGGSC---CSSE
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc--c-ccceec-cChhhcc---cCCe
Confidence 34568999999999998877662 1 23689999999 76666655542 2 336554 3444443 2346
Q ss_pred EEEEecccc
Q 015306 192 IIISEWMGY 200 (409)
Q Consensus 192 vVvs~~~~~ 200 (409)
+|+|+-+..
T Consensus 151 ~iiaNE~fD 159 (365)
T d1zkda1 151 VILANEYFD 159 (365)
T ss_dssp EEEEESSGG
T ss_pred EEEecccCc
Confidence 888875433
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.46 E-value=0.15 Score=44.12 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=39.5
Q ss_pred EEEEcccccc--cCCCCceeEEEEeccccccc---------ChhHHHHHHHHHHhcccCCeEEEc
Q 015306 174 TVLKGKIEEI--ELPVTKVDIIISEWMGYFLL---------FENMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 174 ~~~~~d~~~~--~~~~~~~DvVvs~~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~lip 227 (409)
.++.+|..++ .++++++|+|+.++. |... +...+...+.++.|+|||+|.++.
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPP-Yn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~ 69 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPP-YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAI 69 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCC-SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCC-CCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence 4677888775 377899999999984 3321 123456778899999999998874
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.44 E-value=0.42 Score=41.30 Aligned_cols=75 Identities=21% Similarity=0.380 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC----------
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL---------- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~---------- 185 (409)
.+|+++|-.|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+.. .++.++.+|+.+...
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999998887 45667777887 899999999 888888877776643 468999999977430
Q ss_pred CCCceeEEEEe
Q 015306 186 PVTKVDIIISE 196 (409)
Q Consensus 186 ~~~~~DvVvs~ 196 (409)
..++.|++|.+
T Consensus 82 ~~g~iDilvnn 92 (272)
T d1xkqa_ 82 QFGKIDVLVNN 92 (272)
T ss_dssp HHSCCCEEEEC
T ss_pred HhCCceEEEeC
Confidence 12679999986
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.90 E-value=0.46 Score=40.62 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------CC
Q 015306 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 187 (409)
Q Consensus 122 ~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 187 (409)
.|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+....-..++.++.+|+.+..- .-
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 5889999999887 44666677787 899999998 777666655544334568999999987531 12
Q ss_pred CceeEEEEec
Q 015306 188 TKVDIIISEW 197 (409)
Q Consensus 188 ~~~DvVvs~~ 197 (409)
++.|++|.+.
T Consensus 81 G~iDilVnnA 90 (254)
T d2gdza1 81 GRLDILVNNA 90 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCcCeecccc
Confidence 6899999864
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.90 E-value=0.6 Score=39.85 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=52.9
Q ss_pred CEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------CCCc
Q 015306 124 KVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PVTK 189 (409)
Q Consensus 124 ~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~~ 189 (409)
+.+|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+..- .-++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 34677898876 44666677787 899999999 8887777777665 358889999987530 1378
Q ss_pred eeEEEEec
Q 015306 190 VDIIISEW 197 (409)
Q Consensus 190 ~DvVvs~~ 197 (409)
.|++|.+.
T Consensus 79 iDilVnnA 86 (255)
T d1gega_ 79 FDVIVNNA 86 (255)
T ss_dssp CCEEEECC
T ss_pred ccEEEecc
Confidence 99999863
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.71 E-value=0.55 Score=40.58 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC----------
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL---------- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~---------- 185 (409)
..|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+.. .++.++.+|+.+...
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 47899999999887 35667777887 899999999 888877777776653 569999999977530
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
.-++.|++|.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 126799999863
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=88.68 E-value=1.1 Score=35.94 Aligned_cols=97 Identities=19% Similarity=0.063 Sum_probs=57.9
Q ss_pred HHhccCCCCCCEEEEEcCC--CChHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCC
Q 015306 114 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV 187 (409)
Q Consensus 114 l~~~~~~~~~~~VLDlGcG--~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~ 187 (409)
+.......++.+||-.|+. .|..++.+|+ .|+ +|+++.-++ ..+.+++. |. -.++.-+-.+.. +..
T Consensus 23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l~~ 94 (177)
T d1o89a2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPLEK 94 (177)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSSCC
T ss_pred HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHHHh
Confidence 3333334445578876643 3577888888 566 899998888 77766653 32 233333322221 334
Q ss_pred CceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEcc
Q 015306 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (409)
Q Consensus 188 ~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (409)
..+|.|+- .+ . . ..+....+.|+++|+++..
T Consensus 95 ~~~~~vvD-~V---g--g----~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 95 QVWAGAID-TV---G--D----KVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp CCEEEEEE-SS---C--H----HHHHHHHHTEEEEEEEEEC
T ss_pred hcCCeeEE-Ec---c--h----HHHHHHHHHhccccceEee
Confidence 66888763 22 1 1 2355666889999999853
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.53 E-value=0.6 Score=40.59 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHH-HHHHHcCCCCcEEEEEccccccc----------
Q 015306 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAK-QIVEANGFSNVITVLKGKIEEIE---------- 184 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~---------- 184 (409)
..+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+. +.....+ .++.++.+|+.+..
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhh
Confidence 367899999999887 55666777787 999999998 655444 4444443 45889999987753
Q ss_pred CCCCceeEEEEec
Q 015306 185 LPVTKVDIIISEW 197 (409)
Q Consensus 185 ~~~~~~DvVvs~~ 197 (409)
...+..|++|.+.
T Consensus 99 ~~~g~iDilvnnA 111 (294)
T d1w6ua_ 99 KVAGHPNIVINNA 111 (294)
T ss_dssp HHTCSCSEEEECC
T ss_pred hhccccchhhhhh
Confidence 1147899999863
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=88.39 E-value=0.47 Score=40.63 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEccccccc----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (409)
..|+++|--|++.| .++..+++.|+ +|+.+|.++ ..+.+++.....+ .++.++.+|+.+.. -
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDA 83 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999998887 35667777787 899999987 4455555545444 35889999997753 0
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
.-++.|++|.+.
T Consensus 84 ~~g~iDilVnnA 95 (260)
T d1h5qa_ 84 DLGPISGLIANA 95 (260)
T ss_dssp HSCSEEEEEECC
T ss_pred HhCCCcEecccc
Confidence 136899999864
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=87.88 E-value=0.67 Score=39.70 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC----------
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL---------- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~---------- 185 (409)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+.. .++.++.+|+.+...
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 47899999999887 45667777887 899999999 888777777766543 569999999976430
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
.-++.|++|.+.
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 126899999863
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.56 E-value=0.59 Score=39.65 Aligned_cols=70 Identities=24% Similarity=0.202 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCce
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 190 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 190 (409)
..|+++|-.|++.| .++..+++.|+ +|+.+|.++ -++.+.+.. ..+..+..|+.+.. -.-++.
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 58899999999887 55667777787 899999998 665544332 13678888887643 123689
Q ss_pred eEEEEec
Q 015306 191 DIIISEW 197 (409)
Q Consensus 191 DvVvs~~ 197 (409)
|++|.+.
T Consensus 78 DilVnnA 84 (244)
T d1pr9a_ 78 DLLVNNA 84 (244)
T ss_dssp CEEEECC
T ss_pred eEEEecc
Confidence 9999863
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=86.73 E-value=0.72 Score=39.59 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (409)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+.. .+.+.++.+|+.+.. + .
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999999887 34566667787 899999998 77766655533 245888999997743 0 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.++.|++|.+.
T Consensus 80 ~g~iD~lVnnA 90 (268)
T d2bgka1 80 HGKLDIMFGNV 90 (268)
T ss_dssp HSCCCEEEECC
T ss_pred cCCcceecccc
Confidence 26899999863
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.37 E-value=0.73 Score=39.33 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
.+|+++|--|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999998876 34555666777 899999998 8777777777665 358889999987430 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
-++.|++|.+.
T Consensus 86 ~g~iDilvnnA 96 (255)
T d1fmca_ 86 LGKVDILVNNA 96 (255)
T ss_dssp HSSCCEEEECC
T ss_pred cCCCCEeeeCC
Confidence 26799999863
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=86.09 E-value=0.4 Score=36.32 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=38.7
Q ss_pred EEEEEcCCCChHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015306 125 VVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (409)
Q Consensus 125 ~VLDlGcG~G~l~~~la~----~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs 195 (409)
+++-+|+| .++..+++ .|. .|+.+|.++ .++.++. .+ ..++.+|..+.. ..-..+|.+++
T Consensus 2 ~~iIiG~G--~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~----~~----~~~~~gd~~~~~~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 2 QFAVIGLG--RFGGSIVKELHRMGH-EVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSLGIRNFEYVIV 70 (134)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTT----TC----SEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred EEEEECCC--HHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHH----hC----CcceeeecccchhhhccCCccccEEEE
Confidence 45556665 55555544 455 899999999 8776642 22 356778887754 12357888776
Q ss_pred e
Q 015306 196 E 196 (409)
Q Consensus 196 ~ 196 (409)
.
T Consensus 71 ~ 71 (134)
T d2hmva1 71 A 71 (134)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.85 E-value=0.8 Score=38.70 Aligned_cols=70 Identities=20% Similarity=0.153 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCce
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 190 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 190 (409)
..|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.. ..+..+..|+.+.. -.-++.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 47899999999887 35667777787 899999988 554443322 23778888987653 113689
Q ss_pred eEEEEec
Q 015306 191 DIIISEW 197 (409)
Q Consensus 191 DvVvs~~ 197 (409)
|++|.+.
T Consensus 76 DilVnnA 82 (242)
T d1cyda_ 76 DLLVNNA 82 (242)
T ss_dssp SEEEECC
T ss_pred eEEEECC
Confidence 9999863
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=85.79 E-value=0.73 Score=37.31 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=62.2
Q ss_pred CEEEEEcCCC-C-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-CC--------CcEEEEEccccccc
Q 015306 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS--------NVITVLKGKIEEIE 184 (409)
Q Consensus 124 ~~VLDlGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 184 (409)
++|--||+|+ | .++..++..|. +|+.+|.++ .++.+.+.+... + +. +++.. ..+..+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~-- 80 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGD-- 80 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTT--
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccccc--
Confidence 4688899987 2 44556677776 899999999 888776665422 1 10 12222 122222
Q ss_pred CCCCceeEEEEecccccccChhHHHHHHHHHHhcccCCeEEEccCCc
Q 015306 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (409)
Q Consensus 185 ~~~~~~DvVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (409)
-...|+|+=.. ......-..++..+.++++|+-++.-++..
T Consensus 81 --~~~adlViEav----~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~ 121 (186)
T d1wdka3 81 --FGNVDLVVEAV----VENPKVKQAVLAEVENHVREDAILASNTST 121 (186)
T ss_dssp --GGGCSEEEECC----CSCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred --ccccceeeeee----cchHHHHHHHHHHHHhhcCCCeeEEecccc
Confidence 25689988422 334455668889999999999887754433
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=85.58 E-value=0.34 Score=40.99 Aligned_cols=53 Identities=11% Similarity=0.025 Sum_probs=38.2
Q ss_pred EEEEcccccc--cCCCCceeEEEEecccccccC---------h---hHHHHHHHHHHhcccCCeEEEc
Q 015306 174 TVLKGKIEEI--ELPVTKVDIIISEWMGYFLLF---------E---NMLNTVLYARDKWLVDDGIVLP 227 (409)
Q Consensus 174 ~~~~~d~~~~--~~~~~~~DvVvs~~~~~~l~~---------~---~~~~~~l~~~~~~LkpgG~lip 227 (409)
+++++|..++ .++++++|+|+.++. |.... + ..+...+.++.++|+|||.++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPP-Y~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~ 72 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPP-YNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYI 72 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCC-CSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCC-CCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccc
Confidence 4788898775 367799999999974 33211 1 1245677889999999998763
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=85.11 E-value=0.38 Score=42.11 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=41.3
Q ss_pred EEEEEccccccc--CCCCceeEEEEecccccccC------------hhHHHHHHHHHHhcccCCeEEEccC
Q 015306 173 ITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLF------------ENMLNTVLYARDKWLVDDGIVLPDK 229 (409)
Q Consensus 173 i~~~~~d~~~~~--~~~~~~DvVvs~~~~~~l~~------------~~~~~~~l~~~~~~LkpgG~lip~~ 229 (409)
=+++++|..++- ++++++|+|+.+++ |.... ...+...+..+.++|+|+|.++...
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPP-Y~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~ 82 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPP-FALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 82 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCC-CSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCC-CcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence 478999998743 67799999999974 43210 1234677889999999999987543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.81 E-value=1.8 Score=37.58 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=56.0
Q ss_pred CCCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC---CCCcEEEEEcccccccC------
Q 015306 119 FLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG---FSNVITVLKGKIEEIEL------ 185 (409)
Q Consensus 119 ~~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~~------ 185 (409)
...+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+.... ...++.++.+|+.+...
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 86 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 86 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence 3468999999999887 34566677787 899999998 6666655554431 23468899999987531
Q ss_pred ----CCCceeEEEEec
Q 015306 186 ----PVTKVDIIISEW 197 (409)
Q Consensus 186 ----~~~~~DvVvs~~ 197 (409)
..++.|++|.+.
T Consensus 87 ~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 87 STLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHhCCeEEEEeec
Confidence 126799999864
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=84.57 E-value=0.91 Score=38.36 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (409)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+. .++..+.+|+.+.. -.
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 46889999998887 45666777787 899999998 7766655543 34788889987643 01
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
.++.|++|.+.
T Consensus 76 ~g~iDilVnnA 86 (243)
T d1q7ba_ 76 FGEVDILVNNA 86 (243)
T ss_dssp TCSCSEEEECC
T ss_pred cCCcceehhhh
Confidence 36899999863
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=84.53 E-value=1.6 Score=37.00 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHH-HHHHHHcCCCCcEEEEEccccccc-----C-----
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMA-KQIVEANGFSNVITVLKGKIEEIE-----L----- 185 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a-~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 185 (409)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+ ++.....+ .++.++.+|+.+.. +
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 46899999999887 45667777887 899999987 55444 44444444 34888999997743 0
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
.-+++|++|.+.
T Consensus 80 ~~g~iDiLVnnA 91 (251)
T d1vl8a_ 80 KFGKLDTVVNAA 91 (251)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 126899999863
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=83.24 E-value=3.1 Score=34.79 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=52.5
Q ss_pred CCCCCEEEEEcCCC--Ch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc---------
Q 015306 120 LFKDKVVLDVGAGT--GI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--------- 184 (409)
Q Consensus 120 ~~~~~~VLDlGcG~--G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------- 184 (409)
...|++||--|+++ |+ ++..+++.|+ +|+.++.++ ..+.+.+.....+- ......|..+..
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 77 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAEL 77 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHHh
Confidence 35789999999876 63 6678888887 799999998 88877777766543 345555554421
Q ss_pred -CCCCceeEEEEec
Q 015306 185 -LPVTKVDIIISEW 197 (409)
Q Consensus 185 -~~~~~~DvVvs~~ 197 (409)
...+..|+++.+.
T Consensus 78 ~~~~~~~d~~v~~a 91 (258)
T d1qsga_ 78 GKVWPKFDGFVHSI 91 (258)
T ss_dssp HTTCSSEEEEEECC
T ss_pred hhcccccceEEEee
Confidence 2247889999763
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=82.74 E-value=1.5 Score=32.72 Aligned_cols=85 Identities=9% Similarity=0.102 Sum_probs=52.6
Q ss_pred EEEEcCCCChHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEeccc
Q 015306 126 VLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMG 199 (409)
Q Consensus 126 VLDlGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~DvVvs~~~~ 199 (409)
|+- ||.|..+..+++. -...|+.+|.++ ..+.++. . .+.++.+|..+.. ..-.+++.+++-.
T Consensus 3 ivI--~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~----~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-- 70 (129)
T d2fy8a1 3 VVI--CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----S----GANFVHGDPTRVSDLEKANVRGARAVIVNL-- 70 (129)
T ss_dssp EEE--ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----T----TCEEEESCTTSHHHHHHTTCTTCSEEEECC--
T ss_pred EEE--ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----c----CccccccccCCHHHHHHhhhhcCcEEEEec--
Confidence 455 4567788888883 233688999999 7765543 2 2788999987754 2246788888732
Q ss_pred ccccChhHHHHHHHHHHhcccCCeEEE
Q 015306 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (409)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (409)
........+-...+.+.|...++
T Consensus 71 ----~~d~~n~~~~~~~r~~~~~~~ii 93 (129)
T d2fy8a1 71 ----ESDSETIHCILGIRKIDESVRII 93 (129)
T ss_dssp ----SSHHHHHHHHHHHHHHCSSSCEE
T ss_pred ----cchhhhHHHHHHHHHHCCCceEE
Confidence 21222222333446677776554
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.93 E-value=1.6 Score=36.73 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015306 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (409)
Q Consensus 120 ~~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (409)
...|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+. +++.++.+|+.+..-
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVT 76 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHH
Confidence 357899999999988 45667777888 899999998 7665554432 458889999877430
Q ss_pred CCCceeEEEEec
Q 015306 186 PVTKVDIIISEW 197 (409)
Q Consensus 186 ~~~~~DvVvs~~ 197 (409)
..+..|++|.+.
T Consensus 77 ~~g~idilinnA 88 (244)
T d1nffa_ 77 AFGGLHVLVNNA 88 (244)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCeEEEECC
Confidence 126799999863
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=81.90 E-value=1.7 Score=36.74 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+. ...++.++.+|+.+... .
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999998887 44666777787 899999998 7776666553 23569999999987530 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
-++.|++|.+.
T Consensus 80 ~G~iDiLVnnA 90 (251)
T d1zk4a1 80 FGPVSTLVNNA 90 (251)
T ss_dssp HSSCCEEEECC
T ss_pred hCCceEEEecc
Confidence 26799999864
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.35 E-value=2 Score=36.29 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCCC---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015306 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (409)
Q Consensus 121 ~~~~~VLDlGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (409)
..|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.. ..+.++.+|+.+..- .
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence 57899999999887 45666777787 899999998 666554432 237889999877430 1
Q ss_pred CCceeEEEEec
Q 015306 187 VTKVDIIISEW 197 (409)
Q Consensus 187 ~~~~DvVvs~~ 197 (409)
-++.|++|.+.
T Consensus 77 ~g~iDilVnnA 87 (250)
T d1ydea1 77 FGRLDCVVNNA 87 (250)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEecc
Confidence 26799999864
|